AXYL_00023	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AXYL_00049	PWY-6654	phosphopantothenate biosynthesis III
AXYL_00056	PWY-6167	flavin biosynthesis II (archaea)
AXYL_00056	PWY-6168	flavin biosynthesis III (fungi)
AXYL_00057	PWY-6424	AXYL_00057
AXYL_00060	PWY-5101	L-isoleucine biosynthesis II
AXYL_00060	PWY-5103	L-isoleucine biosynthesis III
AXYL_00060	PWY-5104	L-isoleucine biosynthesis IV
AXYL_00060	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AXYL_00060	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AXYL_00060	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AXYL_00060	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AXYL_00071	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AXYL_00096	PWY-43	putrescine biosynthesis II
AXYL_00112	PWY-4381	fatty acid biosynthesis initiation I
AXYL_00112	PWY-5743	3-hydroxypropanoate cycle
AXYL_00112	PWY-5744	glyoxylate assimilation
AXYL_00112	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AXYL_00112	PWY-6679	jadomycin biosynthesis
AXYL_00112	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AXYL_00137	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AXYL_00138	PWY-6871	3-methylbutanol biosynthesis
AXYL_00170	PWY-3781	aerobic respiration I (cytochrome c)
AXYL_00170	PWY-6692	Fe(II) oxidation
AXYL_00170	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
AXYL_00170	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AXYL_00176	PWY-5663	tetrahydrobiopterin biosynthesis I
AXYL_00176	PWY-5664	tetrahydrobiopterin biosynthesis II
AXYL_00176	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AXYL_00176	PWY-6703	preQ<sub>0</sub> biosynthesis
AXYL_00176	PWY-6983	tetrahydrobiopterin biosynthesis III
AXYL_00176	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AXYL_00192	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_00192	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_00201	PWY-723	alkylnitronates degradation
AXYL_00209	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AXYL_00216	PWY-3781	aerobic respiration I (cytochrome c)
AXYL_00216	PWY-4521	arsenite oxidation I (respiratory)
AXYL_00216	PWY-6692	Fe(II) oxidation
AXYL_00216	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AXYL_00229	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AXYL_00234	PWY-6749	CMP-legionaminate biosynthesis I
AXYL_00258	PWY-5392	reductive TCA cycle II
AXYL_00258	PWY-5537	pyruvate fermentation to acetate V
AXYL_00258	PWY-5538	pyruvate fermentation to acetate VI
AXYL_00258	PWY-5690	TCA cycle II (plants and fungi)
AXYL_00258	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_00258	PWY-6728	methylaspartate cycle
AXYL_00258	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_00258	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AXYL_00276	PWY-6654	phosphopantothenate biosynthesis III
AXYL_00280	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AXYL_00280	PWY-3162	L-tryptophan degradation V (side chain pathway)
AXYL_00280	PWY-5057	L-valine degradation II
AXYL_00280	PWY-5076	L-leucine degradation III
AXYL_00280	PWY-5078	L-isoleucine degradation II
AXYL_00280	PWY-5079	L-phenylalanine degradation III
AXYL_00280	PWY-5082	L-methionine degradation III
AXYL_00280	PWY-5480	pyruvate fermentation to ethanol I
AXYL_00280	PWY-5486	pyruvate fermentation to ethanol II
AXYL_00280	PWY-5751	phenylethanol biosynthesis
AXYL_00280	PWY-6028	acetoin degradation
AXYL_00280	PWY-6313	serotonin degradation
AXYL_00280	PWY-6333	acetaldehyde biosynthesis I
AXYL_00280	PWY-6342	noradrenaline and adrenaline degradation
AXYL_00280	PWY-6587	pyruvate fermentation to ethanol III
AXYL_00280	PWY-6802	salidroside biosynthesis
AXYL_00280	PWY-6871	3-methylbutanol biosynthesis
AXYL_00280	PWY-7013	L-1,2-propanediol degradation
AXYL_00280	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AXYL_00280	PWY-7118	chitin degradation to ethanol
AXYL_00280	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AXYL_00280	PWY-7557	dehydrodiconiferyl alcohol degradation
AXYL_00284	PWY-5028	L-histidine degradation II
AXYL_00284	PWY-5030	L-histidine degradation III
AXYL_00286	PWY-5028	L-histidine degradation II
AXYL_00286	PWY-5030	L-histidine degradation III
AXYL_00287	PWY-5028	L-histidine degradation II
AXYL_00287	PWY-5030	L-histidine degradation III
AXYL_00328	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AXYL_00339	PWY-5958	acridone alkaloid biosynthesis
AXYL_00339	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AXYL_00339	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AXYL_00340	PWY-5958	acridone alkaloid biosynthesis
AXYL_00340	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AXYL_00340	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AXYL_00341	PWY-181	photorespiration
AXYL_00342	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AXYL_00342	PWY-5723	Rubisco shunt
AXYL_00349	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AXYL_00349	PWY-6148	tetrahydromethanopterin biosynthesis
AXYL_00349	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AXYL_00349	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AXYL_00351	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AXYL_00363	PWY-5033	nicotinate degradation II
AXYL_00363	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_00363	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_00363	PWY-6993	nicotine degradation II (pyrrolidine pathway)
AXYL_00363	PWY-722	nicotinate degradation I
AXYL_00375	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AXYL_00377	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AXYL_00380	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AXYL_00380	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AXYL_00401	PWY-723	alkylnitronates degradation
AXYL_00405	PWY-1361	benzoyl-CoA degradation I (aerobic)
AXYL_00405	PWY-5109	2-methylbutanoate biosynthesis
AXYL_00405	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AXYL_00405	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AXYL_00405	PWY-5177	glutaryl-CoA degradation
AXYL_00405	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AXYL_00405	PWY-6435	4-hydroxybenzoate biosynthesis V
AXYL_00405	PWY-6583	pyruvate fermentation to butanol I
AXYL_00405	PWY-6863	pyruvate fermentation to hexanol
AXYL_00405	PWY-6883	pyruvate fermentation to butanol II
AXYL_00405	PWY-6944	androstenedione degradation
AXYL_00405	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AXYL_00405	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AXYL_00405	PWY-7007	methyl ketone biosynthesis
AXYL_00405	PWY-7046	4-coumarate degradation (anaerobic)
AXYL_00405	PWY-7094	fatty acid salvage
AXYL_00405	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AXYL_00405	PWY-735	jasmonic acid biosynthesis
AXYL_00405	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AXYL_00407	PWY-5686	UMP biosynthesis
AXYL_00407	PWY-5704	urea degradation II
AXYL_00421	PWY-4261	glycerol degradation I
AXYL_00421	PWY-6118	glycerol-3-phosphate shuttle
AXYL_00421	PWY-6952	glycerophosphodiester degradation
AXYL_00422	PWY-4261	glycerol degradation I
AXYL_00465	PWY-6840	homoglutathione biosynthesis
AXYL_00465	PWY-7255	ergothioneine biosynthesis I (bacteria)
AXYL_00476	PWY-5344	L-homocysteine biosynthesis
AXYL_00497	PWY-5839	menaquinol-7 biosynthesis
AXYL_00497	PWY-5844	menaquinol-9 biosynthesis
AXYL_00497	PWY-5849	menaquinol-6 biosynthesis
AXYL_00497	PWY-5890	menaquinol-10 biosynthesis
AXYL_00497	PWY-5891	menaquinol-11 biosynthesis
AXYL_00497	PWY-5892	menaquinol-12 biosynthesis
AXYL_00497	PWY-5895	menaquinol-13 biosynthesis
AXYL_00505	PWY-6910	hydroxymethylpyrimidine salvage
AXYL_00505	PWY-7356	thiamin salvage IV (yeast)
AXYL_00505	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AXYL_00506	PWY-6891	thiazole biosynthesis II (Bacillus)
AXYL_00506	PWY-6892	thiazole biosynthesis I (E. coli)
AXYL_00509	PWY-2201	folate transformations I
AXYL_00509	PWY-3841	folate transformations II
AXYL_00515	PWY-6683	sulfate reduction III (assimilatory)
AXYL_00532	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AXYL_00532	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AXYL_00532	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AXYL_00532	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AXYL_00535	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AXYL_00544	PWY-4261	glycerol degradation I
AXYL_00561	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AXYL_00569	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AXYL_00569	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AXYL_00569	PWY-6897	thiamin salvage II
AXYL_00569	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AXYL_00569	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AXYL_00569	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
AXYL_00569	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AXYL_00571	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AXYL_00600	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AXYL_00601	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AXYL_00601	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AXYL_00601	PWY-6897	thiamin salvage II
AXYL_00601	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AXYL_00601	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AXYL_00601	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
AXYL_00601	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AXYL_00612	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AXYL_00623	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AXYL_00623	PWY-6416	quinate degradation II
AXYL_00623	PWY-6707	gallate biosynthesis
AXYL_00637	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AXYL_00637	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AXYL_00637	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AXYL_00637	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AXYL_00637	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AXYL_00637	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AXYL_00637	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AXYL_00637	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AXYL_00638	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AXYL_00638	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AXYL_00638	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AXYL_00638	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AXYL_00638	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AXYL_00638	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AXYL_00638	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AXYL_00638	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AXYL_00646	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AXYL_00647	PWY-5392	reductive TCA cycle II
AXYL_00647	PWY-5537	pyruvate fermentation to acetate V
AXYL_00647	PWY-5538	pyruvate fermentation to acetate VI
AXYL_00647	PWY-5690	TCA cycle II (plants and fungi)
AXYL_00647	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_00647	PWY-6728	methylaspartate cycle
AXYL_00647	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_00647	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AXYL_00663	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AXYL_00663	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AXYL_00671	PWY-1622	formaldehyde assimilation I (serine pathway)
AXYL_00671	PWY-181	photorespiration
AXYL_00671	PWY-2161	folate polyglutamylation
AXYL_00671	PWY-2201	folate transformations I
AXYL_00671	PWY-3661	glycine betaine degradation I
AXYL_00671	PWY-3661-1	glycine betaine degradation II (mammalian)
AXYL_00671	PWY-3841	folate transformations II
AXYL_00671	PWY-5497	purine nucleobases degradation II (anaerobic)
AXYL_00688	PWY-5316	nicotine biosynthesis
AXYL_00688	PWY-5381	pyridine nucleotide cycling (plants)
AXYL_00688	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AXYL_00688	PWY-7342	superpathway of nicotine biosynthesis
AXYL_00699	PWY-5386	methylglyoxal degradation I
AXYL_00758	PWY-4041	&gamma;-glutamyl cycle
AXYL_00758	PWY-5826	hypoglycin biosynthesis
AXYL_00765	PWY-5101	L-isoleucine biosynthesis II
AXYL_00765	PWY-5103	L-isoleucine biosynthesis III
AXYL_00765	PWY-5104	L-isoleucine biosynthesis IV
AXYL_00765	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AXYL_00779	PWY-5686	UMP biosynthesis
AXYL_00785	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_00785	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_00786	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AXYL_00786	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AXYL_00786	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AXYL_00787	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_00787	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_00789	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AXYL_00789	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AXYL_00789	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AXYL_00789	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AXYL_00790	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_00790	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_00791	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_00791	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_00814	PWY-2301	<i>myo</i>-inositol biosynthesis
AXYL_00814	PWY-4702	phytate degradation I
AXYL_00814	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
AXYL_00856	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AXYL_00859	PWY-7158	L-phenylalanine degradation V
AXYL_00872	PWY-1042	glycolysis IV (plant cytosol)
AXYL_00872	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AXYL_00872	PWY-5484	glycolysis II (from fructose 6-phosphate)
AXYL_00872	PWY-5723	Rubisco shunt
AXYL_00872	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AXYL_00872	PWY-6886	1-butanol autotrophic biosynthesis
AXYL_00872	PWY-6901	superpathway of glucose and xylose degradation
AXYL_00872	PWY-7003	glycerol degradation to butanol
AXYL_00872	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AXYL_00872	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AXYL_00876	PWY-5386	methylglyoxal degradation I
AXYL_00877	PWY-6832	2-aminoethylphosphonate degradation II
AXYL_00890	PWY-723	alkylnitronates degradation
AXYL_00903	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AXYL_00903	PWY-6148	tetrahydromethanopterin biosynthesis
AXYL_00903	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AXYL_00903	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AXYL_00907	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AXYL_00907	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AXYL_00907	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AXYL_00908	PWY-2781	<i>cis</i>-zeatin biosynthesis
AXYL_00913	PWY-5392	reductive TCA cycle II
AXYL_00913	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AXYL_00913	PWY-5690	TCA cycle II (plants and fungi)
AXYL_00913	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_00913	PWY-6728	methylaspartate cycle
AXYL_00913	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_00913	PWY-7254	TCA cycle VII (acetate-producers)
AXYL_00913	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AXYL_00917	PWY-4041	&gamma;-glutamyl cycle
AXYL_00917	PWY-5826	hypoglycin biosynthesis
AXYL_00923	PWY-2201	folate transformations I
AXYL_00923	PWY-5497	purine nucleobases degradation II (anaerobic)
AXYL_00926	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AXYL_00926	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AXYL_00942	PWY-5958	acridone alkaloid biosynthesis
AXYL_00942	PWY-6543	4-aminobenzoate biosynthesis
AXYL_00942	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AXYL_00942	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AXYL_00942	PWY-6722	candicidin biosynthesis
AXYL_00945	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AXYL_00945	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AXYL_00945	PWY-7242	D-fructuronate degradation
AXYL_00945	PWY-7310	D-glucosaminate degradation
AXYL_00955	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AXYL_00955	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AXYL_00979	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AXYL_00991	PWY-6123	inosine-5'-phosphate biosynthesis I
AXYL_00991	PWY-6124	inosine-5'-phosphate biosynthesis II
AXYL_00991	PWY-7234	inosine-5'-phosphate biosynthesis III
AXYL_01007	PWY-3801	sucrose degradation II (sucrose synthase)
AXYL_01007	PWY-6527	stachyose degradation
AXYL_01007	PWY-6981	chitin biosynthesis
AXYL_01007	PWY-7238	sucrose biosynthesis II
AXYL_01007	PWY-7343	UDP-glucose biosynthesis
AXYL_01012	PWY-5057	L-valine degradation II
AXYL_01012	PWY-5076	L-leucine degradation III
AXYL_01012	PWY-5078	L-isoleucine degradation II
AXYL_01012	PWY-5101	L-isoleucine biosynthesis II
AXYL_01012	PWY-5103	L-isoleucine biosynthesis III
AXYL_01012	PWY-5104	L-isoleucine biosynthesis IV
AXYL_01012	PWY-5108	L-isoleucine biosynthesis V
AXYL_01022	PWY-5686	UMP biosynthesis
AXYL_01087	PWY-4202	arsenate detoxification I (glutaredoxin)
AXYL_01087	PWY-4621	arsenate detoxification II (glutaredoxin)
AXYL_01143	PWY-3781	aerobic respiration I (cytochrome c)
AXYL_01143	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AXYL_01143	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AXYL_01143	PWY-5690	TCA cycle II (plants and fungi)
AXYL_01143	PWY-6728	methylaspartate cycle
AXYL_01143	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_01143	PWY-7254	TCA cycle VII (acetate-producers)
AXYL_01143	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AXYL_01153	PWY-5642	2,4-dinitrotoluene degradation
AXYL_01153	PWY-6373	acrylate degradation
AXYL_01157	PWY-5506	methanol oxidation to formaldehyde IV
AXYL_01161	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_01161	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_01162	PWY-2941	L-lysine biosynthesis II
AXYL_01162	PWY-2942	L-lysine biosynthesis III
AXYL_01162	PWY-5097	L-lysine biosynthesis VI
AXYL_01166	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AXYL_01166	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AXYL_01166	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AXYL_01184	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_01184	PWY-6549	L-glutamine biosynthesis III
AXYL_01184	PWY-6728	methylaspartate cycle
AXYL_01184	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_01184	PWY-7124	ethylene biosynthesis V (engineered)
AXYL_01184	PWY-7254	TCA cycle VII (acetate-producers)
AXYL_01184	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AXYL_01187	PWY-2941	L-lysine biosynthesis II
AXYL_01187	PWY-2942	L-lysine biosynthesis III
AXYL_01187	PWY-5097	L-lysine biosynthesis VI
AXYL_01214	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AXYL_01217	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AXYL_01238	PWY-5101	L-isoleucine biosynthesis II
AXYL_01238	PWY-5103	L-isoleucine biosynthesis III
AXYL_01238	PWY-5104	L-isoleucine biosynthesis IV
AXYL_01238	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AXYL_01238	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AXYL_01238	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AXYL_01238	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AXYL_01239	PWY-5101	L-isoleucine biosynthesis II
AXYL_01239	PWY-5103	L-isoleucine biosynthesis III
AXYL_01239	PWY-5104	L-isoleucine biosynthesis IV
AXYL_01239	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AXYL_01239	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AXYL_01239	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AXYL_01239	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AXYL_01240	PWY-5101	L-isoleucine biosynthesis II
AXYL_01240	PWY-5103	L-isoleucine biosynthesis III
AXYL_01240	PWY-5104	L-isoleucine biosynthesis IV
AXYL_01240	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AXYL_01241	PWY-5669	phosphatidylethanolamine biosynthesis I
AXYL_01261	PWY-1042	glycolysis IV (plant cytosol)
AXYL_01261	PWY-5484	glycolysis II (from fructose 6-phosphate)
AXYL_01261	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AXYL_01261	PWY-7003	glycerol degradation to butanol
AXYL_01280	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AXYL_01280	PWY-6416	quinate degradation II
AXYL_01280	PWY-6707	gallate biosynthesis
AXYL_01289	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_01289	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_01293	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AXYL_01362	PWY-5874	heme degradation
AXYL_01362	PWY-5915	phycoerythrobilin biosynthesis I
AXYL_01362	PWY-5917	phycocyanobilin biosynthesis
AXYL_01362	PWY-7170	phytochromobilin biosynthesis
AXYL_01407	PWY-5386	methylglyoxal degradation I
AXYL_01425	PWY-5694	allantoin degradation to glyoxylate I
AXYL_01425	PWY-5705	allantoin degradation to glyoxylate III
AXYL_01450	PWY-4041	&gamma;-glutamyl cycle
AXYL_01450	PWY-5826	hypoglycin biosynthesis
AXYL_01451	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AXYL_01451	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AXYL_01451	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AXYL_01470	PWY-3781	aerobic respiration I (cytochrome c)
AXYL_01470	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AXYL_01470	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AXYL_01470	PWY-6692	Fe(II) oxidation
AXYL_01476	PWY-7560	methylerythritol phosphate pathway II
AXYL_01477	PWY-7560	methylerythritol phosphate pathway II
AXYL_01519	PWY-5381	pyridine nucleotide cycling (plants)
AXYL_01525	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AXYL_01528	PWY-4381	fatty acid biosynthesis initiation I
AXYL_01528	PWY-5743	3-hydroxypropanoate cycle
AXYL_01528	PWY-5744	glyoxylate assimilation
AXYL_01528	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AXYL_01528	PWY-6679	jadomycin biosynthesis
AXYL_01528	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AXYL_01545	PWY-4381	fatty acid biosynthesis initiation I
AXYL_01546	PWY-4381	fatty acid biosynthesis initiation I
AXYL_01546	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AXYL_01546	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AXYL_01547	PWY-5367	petroselinate biosynthesis
AXYL_01547	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AXYL_01547	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AXYL_01547	PWY-5989	stearate biosynthesis II (bacteria and plants)
AXYL_01547	PWY-5994	palmitate biosynthesis I (animals and fungi)
AXYL_01547	PWY-6113	superpathway of mycolate biosynthesis
AXYL_01547	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AXYL_01547	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AXYL_01547	PWY-6951	AXYL_01547
AXYL_01547	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
AXYL_01547	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AXYL_01547	PWYG-321	mycolate biosynthesis
AXYL_01569	PWY-5988	wound-induced proteolysis I
AXYL_01569	PWY-6018	seed germination protein turnover
AXYL_01573	PWY-5642	2,4-dinitrotoluene degradation
AXYL_01573	PWY-6373	acrylate degradation
AXYL_01577	PWY-3941	&beta;-alanine biosynthesis II
AXYL_01577	PWY-5104	L-isoleucine biosynthesis IV
AXYL_01577	PWY-5747	2-methylcitrate cycle II
AXYL_01580	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AXYL_01580	PWY-7118	chitin degradation to ethanol
AXYL_01604	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AXYL_01608	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AXYL_01608	PWY-7177	UTP and CTP dephosphorylation II
AXYL_01608	PWY-7185	UTP and CTP dephosphorylation I
AXYL_01611	PWY-1042	glycolysis IV (plant cytosol)
AXYL_01611	PWY-1622	formaldehyde assimilation I (serine pathway)
AXYL_01611	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AXYL_01611	PWY-5484	glycolysis II (from fructose 6-phosphate)
AXYL_01611	PWY-5723	Rubisco shunt
AXYL_01611	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AXYL_01611	PWY-6886	1-butanol autotrophic biosynthesis
AXYL_01611	PWY-6901	superpathway of glucose and xylose degradation
AXYL_01611	PWY-7003	glycerol degradation to butanol
AXYL_01611	PWY-7124	ethylene biosynthesis V (engineered)
AXYL_01611	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AXYL_01626	PWY-5747	2-methylcitrate cycle II
AXYL_01627	PWY-1622	formaldehyde assimilation I (serine pathway)
AXYL_01627	PWY-5392	reductive TCA cycle II
AXYL_01627	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AXYL_01627	PWY-5690	TCA cycle II (plants and fungi)
AXYL_01627	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_01627	PWY-6728	methylaspartate cycle
AXYL_01627	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_01627	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AXYL_01627	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AXYL_01631	PWY-3781	aerobic respiration I (cytochrome c)
AXYL_01631	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AXYL_01631	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AXYL_01631	PWY-5690	TCA cycle II (plants and fungi)
AXYL_01631	PWY-6728	methylaspartate cycle
AXYL_01631	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_01631	PWY-7254	TCA cycle VII (acetate-producers)
AXYL_01631	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AXYL_01632	PWY-3781	aerobic respiration I (cytochrome c)
AXYL_01632	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AXYL_01632	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AXYL_01632	PWY-5690	TCA cycle II (plants and fungi)
AXYL_01632	PWY-6728	methylaspartate cycle
AXYL_01632	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_01632	PWY-7254	TCA cycle VII (acetate-producers)
AXYL_01632	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AXYL_01637	PWY-1281	sulfoacetaldehyde degradation I
AXYL_01637	PWY-5482	pyruvate fermentation to acetate II
AXYL_01637	PWY-5485	pyruvate fermentation to acetate IV
AXYL_01637	PWY-5497	purine nucleobases degradation II (anaerobic)
AXYL_01637	PWY-6637	sulfolactate degradation II
AXYL_01638	PWY-6891	thiazole biosynthesis II (Bacillus)
AXYL_01638	PWY-6892	thiazole biosynthesis I (E. coli)
AXYL_01638	PWY-7560	methylerythritol phosphate pathway II
AXYL_01641	PWY-5691	urate degradation to allantoin I
AXYL_01641	PWY-7394	urate degradation to allantoin II
AXYL_01645	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AXYL_01646	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AXYL_01647	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AXYL_01647	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AXYL_01666	PWY-5676	acetyl-CoA fermentation to butanoate II
AXYL_01666	PWY-5741	ethylmalonyl-CoA pathway
AXYL_01666	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AXYL_01677	PWY-7052	cyanophycin metabolism
AXYL_01678	PWY-7052	cyanophycin metabolism
AXYL_01690	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
AXYL_01695	PWY-5392	reductive TCA cycle II
AXYL_01695	PWY-5537	pyruvate fermentation to acetate V
AXYL_01695	PWY-5538	pyruvate fermentation to acetate VI
AXYL_01695	PWY-5690	TCA cycle II (plants and fungi)
AXYL_01695	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_01695	PWY-6728	methylaspartate cycle
AXYL_01695	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_01695	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AXYL_01707	PWY-181	photorespiration
AXYL_01708	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
AXYL_01708	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
AXYL_01708	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
AXYL_01708	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
AXYL_01708	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
AXYL_01708	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
AXYL_01708	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
AXYL_01708	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
AXYL_01708	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
AXYL_01708	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
AXYL_01712	PWY-3461	L-tyrosine biosynthesis II
AXYL_01712	PWY-3462	L-phenylalanine biosynthesis II
AXYL_01712	PWY-6120	L-tyrosine biosynthesis III
AXYL_01712	PWY-6627	salinosporamide A biosynthesis
AXYL_01712	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
AXYL_01714	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
AXYL_01715	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AXYL_01716	PWY-7205	CMP phosphorylation
AXYL_01724	PWY-6936	seleno-amino acid biosynthesis
AXYL_01727	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AXYL_01727	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AXYL_01733	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_01733	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AXYL_01733	PWY-6638	sulfolactate degradation III
AXYL_01733	PWY-6642	(<i>R</i>)-cysteate degradation
AXYL_01733	PWY-6643	coenzyme M biosynthesis II
AXYL_01733	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AXYL_01733	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AXYL_01733	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AXYL_01746	PWY-5278	sulfite oxidation III
AXYL_01746	PWY-5340	sulfate activation for sulfonation
AXYL_01746	PWY-6683	sulfate reduction III (assimilatory)
AXYL_01746	PWY-6932	selenate reduction
AXYL_01747	PWY-5278	sulfite oxidation III
AXYL_01747	PWY-5340	sulfate activation for sulfonation
AXYL_01747	PWY-6683	sulfate reduction III (assimilatory)
AXYL_01747	PWY-6932	selenate reduction
AXYL_01760	PWY-6938	NADH repair
AXYL_01770	PWY-1341	phenylacetate degradation II (anaerobic)
AXYL_01770	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AXYL_01775	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AXYL_01775	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AXYL_01778	PWY-7560	methylerythritol phosphate pathway II
AXYL_01813	PWY-5350	thiosulfate disproportionation III (rhodanese)
AXYL_01834	PWY-6891	thiazole biosynthesis II (Bacillus)
AXYL_01834	PWY-6892	thiazole biosynthesis I (E. coli)
AXYL_01834	PWY-7560	methylerythritol phosphate pathway II
AXYL_01835	PWY-5663	tetrahydrobiopterin biosynthesis I
AXYL_01835	PWY-5664	tetrahydrobiopterin biosynthesis II
AXYL_01835	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AXYL_01835	PWY-6703	preQ<sub>0</sub> biosynthesis
AXYL_01835	PWY-6983	tetrahydrobiopterin biosynthesis III
AXYL_01835	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AXYL_01861	PWY-5686	UMP biosynthesis
AXYL_01872	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AXYL_01872	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AXYL_01872	PWY-6936	seleno-amino acid biosynthesis
AXYL_01872	PWY-702	L-methionine biosynthesis II
AXYL_01874	PWY-6012	acyl carrier protein metabolism I
AXYL_01874	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AXYL_01876	PWY-5392	reductive TCA cycle II
AXYL_01876	PWY-5537	pyruvate fermentation to acetate V
AXYL_01876	PWY-5538	pyruvate fermentation to acetate VI
AXYL_01876	PWY-5690	TCA cycle II (plants and fungi)
AXYL_01876	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_01876	PWY-6728	methylaspartate cycle
AXYL_01876	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_01876	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AXYL_01877	PWY-5392	reductive TCA cycle II
AXYL_01877	PWY-5537	pyruvate fermentation to acetate V
AXYL_01877	PWY-5538	pyruvate fermentation to acetate VI
AXYL_01877	PWY-5690	TCA cycle II (plants and fungi)
AXYL_01877	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_01877	PWY-6728	methylaspartate cycle
AXYL_01877	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_01877	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AXYL_01881	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AXYL_01881	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AXYL_01882	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AXYL_01882	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AXYL_01904	PWY-5484	glycolysis II (from fructose 6-phosphate)
AXYL_01909	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AXYL_01909	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
AXYL_01909	PWY-6164	3-dehydroquinate biosynthesis I
AXYL_01910	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_01910	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_01911	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_01911	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_01912	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_01912	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_01923	PWY-6123	inosine-5'-phosphate biosynthesis I
AXYL_01923	PWY-6124	inosine-5'-phosphate biosynthesis II
AXYL_01923	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AXYL_01923	PWY-7234	inosine-5'-phosphate biosynthesis III
AXYL_01967	PWY-4983	L-citrulline-nitric oxide cycle
AXYL_01967	PWY-4984	urea cycle
AXYL_01967	PWY-5	canavanine biosynthesis
AXYL_01967	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AXYL_01967	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AXYL_01973	PWY-4981	L-proline biosynthesis II (from arginine)
AXYL_01973	PWY-4984	urea cycle
AXYL_01973	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AXYL_01977	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_01977	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_01999	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AXYL_02001	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AXYL_02001	PWY-5723	Rubisco shunt
AXYL_02005	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AXYL_02107	PWY-5381	pyridine nucleotide cycling (plants)
AXYL_02107	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AXYL_02108	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AXYL_02108	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AXYL_02109	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AXYL_02109	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AXYL_02109	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AXYL_02123	PWY-6967	methylamine degradation I
AXYL_02126	PWY-6967	methylamine degradation I
AXYL_02132	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AXYL_02145	PWY-6409	pyoverdine I biosynthesis
AXYL_02145	PWY-6562	norspermidine biosynthesis
AXYL_02145	PWY-761	rhizobactin 1021 biosynthesis
AXYL_02149	PWY-6174	mevalonate pathway II (archaea)
AXYL_02149	PWY-7391	isoprene biosynthesis II (engineered)
AXYL_02149	PWY-7524	mevalonate pathway III (archaea)
AXYL_02149	PWY-922	mevalonate pathway I
AXYL_02151	PWY-5155	&beta;-alanine biosynthesis III
AXYL_02168	PWY-6829	tRNA methylation (yeast)
AXYL_02168	PWY-7285	methylwyosine biosynthesis
AXYL_02168	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AXYL_02170	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AXYL_02170	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AXYL_02170	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AXYL_02170	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AXYL_02170	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AXYL_02170	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AXYL_02170	PWY-7205	CMP phosphorylation
AXYL_02170	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AXYL_02170	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AXYL_02170	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AXYL_02170	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AXYL_02170	PWY-7224	purine deoxyribonucleosides salvage
AXYL_02170	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AXYL_02170	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AXYL_02173	PWY-7560	methylerythritol phosphate pathway II
AXYL_02184	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AXYL_02196	PWY-4381	fatty acid biosynthesis initiation I
AXYL_02196	PWY-5743	3-hydroxypropanoate cycle
AXYL_02196	PWY-5744	glyoxylate assimilation
AXYL_02196	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AXYL_02196	PWY-6679	jadomycin biosynthesis
AXYL_02196	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AXYL_02212	PWY-702	L-methionine biosynthesis II
AXYL_02222	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AXYL_02236	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AXYL_02237	PWY-2941	L-lysine biosynthesis II
AXYL_02237	PWY-2942	L-lysine biosynthesis III
AXYL_02237	PWY-5097	L-lysine biosynthesis VI
AXYL_02237	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AXYL_02237	PWY-6559	spermidine biosynthesis II
AXYL_02237	PWY-6562	norspermidine biosynthesis
AXYL_02237	PWY-7153	grixazone biosynthesis
AXYL_02237	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AXYL_02247	PWY-5101	L-isoleucine biosynthesis II
AXYL_02247	PWY-5103	L-isoleucine biosynthesis III
AXYL_02247	PWY-5104	L-isoleucine biosynthesis IV
AXYL_02247	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AXYL_02288	PWY-1361	benzoyl-CoA degradation I (aerobic)
AXYL_02288	PWY-5109	2-methylbutanoate biosynthesis
AXYL_02288	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AXYL_02288	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AXYL_02288	PWY-5177	glutaryl-CoA degradation
AXYL_02288	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AXYL_02288	PWY-6435	4-hydroxybenzoate biosynthesis V
AXYL_02288	PWY-6583	pyruvate fermentation to butanol I
AXYL_02288	PWY-6863	pyruvate fermentation to hexanol
AXYL_02288	PWY-6883	pyruvate fermentation to butanol II
AXYL_02288	PWY-6944	androstenedione degradation
AXYL_02288	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AXYL_02288	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AXYL_02288	PWY-7007	methyl ketone biosynthesis
AXYL_02288	PWY-7046	4-coumarate degradation (anaerobic)
AXYL_02288	PWY-7094	fatty acid salvage
AXYL_02288	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AXYL_02288	PWY-735	jasmonic acid biosynthesis
AXYL_02288	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AXYL_02290	PWY-5101	L-isoleucine biosynthesis II
AXYL_02290	PWY-5103	L-isoleucine biosynthesis III
AXYL_02290	PWY-5104	L-isoleucine biosynthesis IV
AXYL_02290	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AXYL_02346	PWY-5367	petroselinate biosynthesis
AXYL_02346	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AXYL_02346	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AXYL_02346	PWY-5989	stearate biosynthesis II (bacteria and plants)
AXYL_02346	PWY-5994	palmitate biosynthesis I (animals and fungi)
AXYL_02346	PWY-6113	superpathway of mycolate biosynthesis
AXYL_02346	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AXYL_02346	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AXYL_02346	PWY-6951	AXYL_02346
AXYL_02346	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
AXYL_02346	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AXYL_02346	PWYG-321	mycolate biosynthesis
AXYL_02362	PWY-6012	acyl carrier protein metabolism I
AXYL_02362	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AXYL_02367	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
AXYL_02367	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AXYL_02379	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AXYL_02379	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AXYL_02385	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_02385	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_02387	PWY-3781	aerobic respiration I (cytochrome c)
AXYL_02387	PWY-4521	arsenite oxidation I (respiratory)
AXYL_02387	PWY-6692	Fe(II) oxidation
AXYL_02387	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AXYL_02390	PWY-6523	nitrite-dependent anaerobic methane oxidation
AXYL_02390	PWY-6748	nitrate reduction VII (denitrification)
AXYL_02390	PWY-7084	nitrifier denitrification
AXYL_02392	PWY-6891	thiazole biosynthesis II (Bacillus)
AXYL_02392	PWY-6892	thiazole biosynthesis I (E. coli)
AXYL_02392	PWY-7560	methylerythritol phosphate pathway II
AXYL_02410	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AXYL_02412	PWY-5694	allantoin degradation to glyoxylate I
AXYL_02412	PWY-5705	allantoin degradation to glyoxylate III
AXYL_02418	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AXYL_02459	PWY-1361	benzoyl-CoA degradation I (aerobic)
AXYL_02459	PWY-5109	2-methylbutanoate biosynthesis
AXYL_02459	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AXYL_02459	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AXYL_02459	PWY-5177	glutaryl-CoA degradation
AXYL_02459	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AXYL_02459	PWY-6435	4-hydroxybenzoate biosynthesis V
AXYL_02459	PWY-6583	pyruvate fermentation to butanol I
AXYL_02459	PWY-6863	pyruvate fermentation to hexanol
AXYL_02459	PWY-6883	pyruvate fermentation to butanol II
AXYL_02459	PWY-6944	androstenedione degradation
AXYL_02459	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AXYL_02459	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AXYL_02459	PWY-7007	methyl ketone biosynthesis
AXYL_02459	PWY-7046	4-coumarate degradation (anaerobic)
AXYL_02459	PWY-7094	fatty acid salvage
AXYL_02459	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AXYL_02459	PWY-735	jasmonic acid biosynthesis
AXYL_02459	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AXYL_02486	PWY-5101	L-isoleucine biosynthesis II
AXYL_02486	PWY-5103	L-isoleucine biosynthesis III
AXYL_02486	PWY-5104	L-isoleucine biosynthesis IV
AXYL_02486	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AXYL_02495	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AXYL_02508	PWY-5028	L-histidine degradation II
AXYL_02508	PWY-5030	L-histidine degradation III
AXYL_02516	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AXYL_02516	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AXYL_02546	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AXYL_02546	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AXYL_02546	PWY-6936	seleno-amino acid biosynthesis
AXYL_02546	PWY-702	L-methionine biosynthesis II
AXYL_02594	PWY-6012	acyl carrier protein metabolism I
AXYL_02594	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AXYL_02612	PWY-6167	flavin biosynthesis II (archaea)
AXYL_02612	PWY-6168	flavin biosynthesis III (fungi)
AXYL_02612	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AXYL_02629	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AXYL_02632	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AXYL_02632	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AXYL_02634	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AXYL_02654	PWY-4983	L-citrulline-nitric oxide cycle
AXYL_02654	PWY-4984	urea cycle
AXYL_02654	PWY-5	canavanine biosynthesis
AXYL_02654	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AXYL_02654	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AXYL_02677	PWY-4041	&gamma;-glutamyl cycle
AXYL_02677	PWY-5826	hypoglycin biosynthesis
AXYL_02700	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
AXYL_02700	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
AXYL_02700	PWY-6148	tetrahydromethanopterin biosynthesis
AXYL_02718	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AXYL_02718	PWY-2201	folate transformations I
AXYL_02718	PWY-3841	folate transformations II
AXYL_02718	PWY-5030	L-histidine degradation III
AXYL_02718	PWY-5497	purine nucleobases degradation II (anaerobic)
AXYL_02718	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AXYL_02721	PWY-6891	thiazole biosynthesis II (Bacillus)
AXYL_02721	PWY-6892	thiazole biosynthesis I (E. coli)
AXYL_02721	PWY-7560	methylerythritol phosphate pathway II
AXYL_02723	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AXYL_02723	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AXYL_02775	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AXYL_02792	PWY-2161	folate polyglutamylation
AXYL_02795	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AXYL_02795	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AXYL_02795	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AXYL_02795	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AXYL_02807	PWY-7560	methylerythritol phosphate pathway II
AXYL_02812	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AXYL_02812	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AXYL_02812	PWY-5989	stearate biosynthesis II (bacteria and plants)
AXYL_02812	PWY-5994	palmitate biosynthesis I (animals and fungi)
AXYL_02812	PWY-6113	superpathway of mycolate biosynthesis
AXYL_02812	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AXYL_02812	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AXYL_02812	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AXYL_02812	PWYG-321	mycolate biosynthesis
AXYL_02820	PWY-5484	glycolysis II (from fructose 6-phosphate)
AXYL_02837	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AXYL_02837	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AXYL_02837	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AXYL_02837	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AXYL_02837	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AXYL_02837	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AXYL_02851	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AXYL_02860	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AXYL_02860	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
AXYL_02879	PWY-1281	sulfoacetaldehyde degradation I
AXYL_02879	PWY-6637	sulfolactate degradation II
AXYL_02880	PWY-1281	sulfoacetaldehyde degradation I
AXYL_02880	PWY-5482	pyruvate fermentation to acetate II
AXYL_02880	PWY-5485	pyruvate fermentation to acetate IV
AXYL_02880	PWY-5497	purine nucleobases degradation II (anaerobic)
AXYL_02880	PWY-6637	sulfolactate degradation II
AXYL_02895	PWY-5663	tetrahydrobiopterin biosynthesis I
AXYL_02895	PWY-5664	tetrahydrobiopterin biosynthesis II
AXYL_02895	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AXYL_02895	PWY-6703	preQ<sub>0</sub> biosynthesis
AXYL_02895	PWY-6983	tetrahydrobiopterin biosynthesis III
AXYL_02895	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AXYL_02914	PWY-723	alkylnitronates degradation
AXYL_02917	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AXYL_02917	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AXYL_02917	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AXYL_02921	PWY-5506	methanol oxidation to formaldehyde IV
AXYL_02963	PWY-6823	molybdenum cofactor biosynthesis
AXYL_02964	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AXYL_02964	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AXYL_02964	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AXYL_02964	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AXYL_02977	PWY-5344	L-homocysteine biosynthesis
AXYL_02977	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
AXYL_02980	PWY-5101	L-isoleucine biosynthesis II
AXYL_02980	PWY-5103	L-isoleucine biosynthesis III
AXYL_02980	PWY-5104	L-isoleucine biosynthesis IV
AXYL_02980	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AXYL_03026	PWY-6936	seleno-amino acid biosynthesis
AXYL_03038	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AXYL_03038	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AXYL_03079	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_03079	PWY-6549	L-glutamine biosynthesis III
AXYL_03079	PWY-6728	methylaspartate cycle
AXYL_03079	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_03079	PWY-7124	ethylene biosynthesis V (engineered)
AXYL_03079	PWY-7254	TCA cycle VII (acetate-producers)
AXYL_03079	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AXYL_03082	PWY-6497	D-galactarate degradation II
AXYL_03082	PWY-6499	D-glucarate degradation II
AXYL_03165	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AXYL_03181	PWY-5392	reductive TCA cycle II
AXYL_03181	PWY-5537	pyruvate fermentation to acetate V
AXYL_03181	PWY-5538	pyruvate fermentation to acetate VI
AXYL_03181	PWY-5690	TCA cycle II (plants and fungi)
AXYL_03181	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_03181	PWY-6728	methylaspartate cycle
AXYL_03181	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_03181	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AXYL_03203	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AXYL_03239	PWY-622	starch biosynthesis
AXYL_03241	PWY-2622	trehalose biosynthesis IV
AXYL_03242	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
AXYL_03242	PWY-622	starch biosynthesis
AXYL_03244	PWY-2661	trehalose biosynthesis V
AXYL_03245	PWY-5941	glycogen degradation II (eukaryotic)
AXYL_03245	PWY-6724	starch degradation II
AXYL_03245	PWY-6737	starch degradation V
AXYL_03245	PWY-7238	sucrose biosynthesis II
AXYL_03246	PWY-2661	trehalose biosynthesis V
AXYL_03274	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AXYL_03274	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
AXYL_03274	PWY-6164	3-dehydroquinate biosynthesis I
AXYL_03287	PWY-5669	phosphatidylethanolamine biosynthesis I
AXYL_03295	PWY-3341	L-proline biosynthesis III
AXYL_03295	PWY-4981	L-proline biosynthesis II (from arginine)
AXYL_03295	PWY-6344	L-ornithine degradation II (Stickland reaction)
AXYL_03295	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AXYL_03296	PWY-31	canavanine degradation
AXYL_03296	PWY-4984	urea cycle
AXYL_03296	PWY-6305	putrescine biosynthesis IV
AXYL_03296	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AXYL_03309	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_03309	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_03316	PWY-3341	L-proline biosynthesis III
AXYL_03316	PWY-4981	L-proline biosynthesis II (from arginine)
AXYL_03316	PWY-6344	L-ornithine degradation II (Stickland reaction)
AXYL_03347	PWY-381	nitrate reduction II (assimilatory)
AXYL_03347	PWY-5675	nitrate reduction V (assimilatory)
AXYL_03347	PWY-6549	L-glutamine biosynthesis III
AXYL_03347	PWY-6963	ammonia assimilation cycle I
AXYL_03347	PWY-6964	ammonia assimilation cycle II
AXYL_03349	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
AXYL_03359	PWY-6617	adenosine nucleotides degradation III
AXYL_03364	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AXYL_03373	PWY-5381	pyridine nucleotide cycling (plants)
AXYL_03385	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AXYL_03416	PWY-5381	pyridine nucleotide cycling (plants)
AXYL_03416	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AXYL_03416	PWY-6596	adenosine nucleotides degradation I
AXYL_03416	PWY-6606	guanosine nucleotides degradation II
AXYL_03416	PWY-6607	guanosine nucleotides degradation I
AXYL_03416	PWY-6608	guanosine nucleotides degradation III
AXYL_03416	PWY-7185	UTP and CTP dephosphorylation I
AXYL_03487	PWY-4261	glycerol degradation I
AXYL_03487	PWY-6118	glycerol-3-phosphate shuttle
AXYL_03487	PWY-6952	glycerophosphodiester degradation
AXYL_03506	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AXYL_03511	PWY-6703	preQ<sub>0</sub> biosynthesis
AXYL_03564	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AXYL_03607	PWY-2582	brassinosteroid biosynthesis II
AXYL_03607	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AXYL_03607	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AXYL_03607	PWY-6948	sitosterol degradation to androstenedione
AXYL_03607	PWY-699	brassinosteroid biosynthesis I
AXYL_03607	PWY-7299	progesterone biosynthesis
AXYL_03646	PWY-6854	ethylene biosynthesis III (microbes)
AXYL_03650	PWY-1361	benzoyl-CoA degradation I (aerobic)
AXYL_03650	PWY-5109	2-methylbutanoate biosynthesis
AXYL_03650	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AXYL_03650	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AXYL_03650	PWY-5177	glutaryl-CoA degradation
AXYL_03650	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AXYL_03650	PWY-6435	4-hydroxybenzoate biosynthesis V
AXYL_03650	PWY-6583	pyruvate fermentation to butanol I
AXYL_03650	PWY-6863	pyruvate fermentation to hexanol
AXYL_03650	PWY-6883	pyruvate fermentation to butanol II
AXYL_03650	PWY-6944	androstenedione degradation
AXYL_03650	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AXYL_03650	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AXYL_03650	PWY-7007	methyl ketone biosynthesis
AXYL_03650	PWY-7046	4-coumarate degradation (anaerobic)
AXYL_03650	PWY-7094	fatty acid salvage
AXYL_03650	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AXYL_03650	PWY-735	jasmonic acid biosynthesis
AXYL_03650	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AXYL_03679	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AXYL_03689	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
AXYL_03734	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AXYL_03735	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AXYL_03735	PWY-6596	adenosine nucleotides degradation I
AXYL_03735	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AXYL_03741	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AXYL_03741	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AXYL_03741	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AXYL_03741	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AXYL_03747	PWY-7533	gliotoxin biosynthesis
AXYL_03789	PWY-5101	L-isoleucine biosynthesis II
AXYL_03789	PWY-5103	L-isoleucine biosynthesis III
AXYL_03789	PWY-5104	L-isoleucine biosynthesis IV
AXYL_03789	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AXYL_03827	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_03827	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_03828	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_03828	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_03845	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AXYL_03845	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AXYL_03845	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AXYL_03855	PWY-6683	sulfate reduction III (assimilatory)
AXYL_03869	PWY-5532	adenosine nucleotides degradation IV
AXYL_03869	PWY-5723	Rubisco shunt
AXYL_03876	PWY-723	alkylnitronates degradation
AXYL_03914	PWY-2582	brassinosteroid biosynthesis II
AXYL_03914	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AXYL_03914	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AXYL_03914	PWY-6948	sitosterol degradation to androstenedione
AXYL_03914	PWY-699	brassinosteroid biosynthesis I
AXYL_03914	PWY-7299	progesterone biosynthesis
AXYL_03923	PWY-6897	thiamin salvage II
AXYL_03923	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
AXYL_03923	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AXYL_03963	PWY-6823	molybdenum cofactor biosynthesis
AXYL_03963	PWY-6891	thiazole biosynthesis II (Bacillus)
AXYL_03963	PWY-6892	thiazole biosynthesis I (E. coli)
AXYL_03963	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AXYL_03967	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_03967	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AXYL_03967	PWY-6638	sulfolactate degradation III
AXYL_03967	PWY-6642	(<i>R</i>)-cysteate degradation
AXYL_03967	PWY-6643	coenzyme M biosynthesis II
AXYL_03967	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AXYL_03967	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AXYL_03967	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AXYL_03983	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AXYL_03994	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AXYL_03994	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
AXYL_04075	PWY-3461	L-tyrosine biosynthesis II
AXYL_04075	PWY-3462	L-phenylalanine biosynthesis II
AXYL_04075	PWY-6120	L-tyrosine biosynthesis III
AXYL_04075	PWY-6627	salinosporamide A biosynthesis
AXYL_04080	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AXYL_04080	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AXYL_04081	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AXYL_04081	PWY-6167	flavin biosynthesis II (archaea)
AXYL_04081	PWY-6168	flavin biosynthesis III (fungi)
AXYL_04093	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AXYL_04126	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
AXYL_04126	PWY-6853	ethylene biosynthesis II (microbes)
AXYL_04126	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AXYL_04136	PWY-1361	benzoyl-CoA degradation I (aerobic)
AXYL_04136	PWY-2361	3-oxoadipate degradation
AXYL_04136	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AXYL_04139	PWY-6854	ethylene biosynthesis III (microbes)
AXYL_04145	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AXYL_04145	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
AXYL_04146	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AXYL_04154	PWY-5506	methanol oxidation to formaldehyde IV
AXYL_04156	PWY-2941	L-lysine biosynthesis II
AXYL_04156	PWY-2942	L-lysine biosynthesis III
AXYL_04156	PWY-5097	L-lysine biosynthesis VI
AXYL_04159	PWY-5101	L-isoleucine biosynthesis II
AXYL_04159	PWY-5103	L-isoleucine biosynthesis III
AXYL_04159	PWY-5104	L-isoleucine biosynthesis IV
AXYL_04159	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AXYL_04184	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AXYL_04279	PWY-6610	adenine and adenosine salvage IV
AXYL_04301	PWY-5667	CDP-diacylglycerol biosynthesis I
AXYL_04301	PWY-5981	CDP-diacylglycerol biosynthesis III
AXYL_04302	PWY-1361	benzoyl-CoA degradation I (aerobic)
AXYL_04302	PWY-5109	2-methylbutanoate biosynthesis
AXYL_04302	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AXYL_04302	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AXYL_04302	PWY-5177	glutaryl-CoA degradation
AXYL_04302	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AXYL_04302	PWY-6435	4-hydroxybenzoate biosynthesis V
AXYL_04302	PWY-6583	pyruvate fermentation to butanol I
AXYL_04302	PWY-6863	pyruvate fermentation to hexanol
AXYL_04302	PWY-6883	pyruvate fermentation to butanol II
AXYL_04302	PWY-6944	androstenedione degradation
AXYL_04302	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AXYL_04302	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AXYL_04302	PWY-7007	methyl ketone biosynthesis
AXYL_04302	PWY-7046	4-coumarate degradation (anaerobic)
AXYL_04302	PWY-7094	fatty acid salvage
AXYL_04302	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AXYL_04302	PWY-735	jasmonic acid biosynthesis
AXYL_04302	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AXYL_04307	PWY-5162	2-oxopentenoate degradation
AXYL_04308	PWY-5162	2-oxopentenoate degradation
AXYL_04308	PWY-5436	L-threonine degradation IV
AXYL_04308	PWY-5480	pyruvate fermentation to ethanol I
AXYL_04308	PWY-6587	pyruvate fermentation to ethanol III
AXYL_04308	PWY-7085	triethylamine degradation
AXYL_04308	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
AXYL_04312	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_04312	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_04314	PWY-5316	nicotine biosynthesis
AXYL_04314	PWY-7342	superpathway of nicotine biosynthesis
AXYL_04315	PWY-5316	nicotine biosynthesis
AXYL_04315	PWY-7342	superpathway of nicotine biosynthesis
AXYL_04347	PWY-7153	grixazone biosynthesis
AXYL_04362	PWY-3781	aerobic respiration I (cytochrome c)
AXYL_04362	PWY-4521	arsenite oxidation I (respiratory)
AXYL_04362	PWY-6692	Fe(II) oxidation
AXYL_04362	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AXYL_04363	PWY-3781	aerobic respiration I (cytochrome c)
AXYL_04363	PWY-4521	arsenite oxidation I (respiratory)
AXYL_04363	PWY-6692	Fe(II) oxidation
AXYL_04363	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AXYL_04369	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AXYL_04372	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_04373	PWY-6700	queuosine biosynthesis
AXYL_04376	PWY-5269	cardiolipin biosynthesis II
AXYL_04376	PWY-5668	cardiolipin biosynthesis I
AXYL_04378	PWY-6902	chitin degradation II
AXYL_04379	PWY-6012	acyl carrier protein metabolism I
AXYL_04379	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AXYL_04391	PWY-6834	spermidine biosynthesis III
AXYL_04412	PWY-5392	reductive TCA cycle II
AXYL_04412	PWY-5537	pyruvate fermentation to acetate V
AXYL_04412	PWY-5538	pyruvate fermentation to acetate VI
AXYL_04412	PWY-5690	TCA cycle II (plants and fungi)
AXYL_04412	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_04412	PWY-6728	methylaspartate cycle
AXYL_04412	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_04412	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AXYL_04420	PWY-5747	2-methylcitrate cycle II
AXYL_04474	PWY-3821	galactose degradation III
AXYL_04474	PWY-6317	galactose degradation I (Leloir pathway)
AXYL_04474	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AXYL_04474	PWY-6527	stachyose degradation
AXYL_04474	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AXYL_04474	PWY-7344	UDP-D-galactose biosynthesis
AXYL_04475	PWY-3801	sucrose degradation II (sucrose synthase)
AXYL_04475	PWY-5054	sorbitol biosynthesis I
AXYL_04475	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AXYL_04475	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AXYL_04475	PWY-5659	GDP-mannose biosynthesis
AXYL_04475	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AXYL_04475	PWY-621	sucrose degradation III (sucrose invertase)
AXYL_04475	PWY-622	starch biosynthesis
AXYL_04475	PWY-6531	mannitol cycle
AXYL_04475	PWY-6981	chitin biosynthesis
AXYL_04475	PWY-7238	sucrose biosynthesis II
AXYL_04475	PWY-7347	sucrose biosynthesis III
AXYL_04475	PWY-7385	1,3-propanediol biosynthesis (engineered)
AXYL_04476	PWY-6749	CMP-legionaminate biosynthesis I
AXYL_04479	PWY-6655	xanthan biosynthesis
AXYL_04479	PWY-6658	acetan biosynthesis
AXYL_04481	PWY-5659	GDP-mannose biosynthesis
AXYL_04481	PWY-6073	alginate biosynthesis I (algal)
AXYL_04481	PWY-6082	alginate biosynthesis II (bacterial)
AXYL_04481	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AXYL_04483	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
AXYL_04483	PWY-5739	GDP-D-perosamine biosynthesis
AXYL_04483	PWY-5740	GDP-L-colitose biosynthesis
AXYL_04483	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
AXYL_04484	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
AXYL_04498	PWY-1361	benzoyl-CoA degradation I (aerobic)
AXYL_04498	PWY-5109	2-methylbutanoate biosynthesis
AXYL_04498	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AXYL_04498	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AXYL_04498	PWY-5177	glutaryl-CoA degradation
AXYL_04498	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AXYL_04498	PWY-6435	4-hydroxybenzoate biosynthesis V
AXYL_04498	PWY-6583	pyruvate fermentation to butanol I
AXYL_04498	PWY-6863	pyruvate fermentation to hexanol
AXYL_04498	PWY-6883	pyruvate fermentation to butanol II
AXYL_04498	PWY-6944	androstenedione degradation
AXYL_04498	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AXYL_04498	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AXYL_04498	PWY-7007	methyl ketone biosynthesis
AXYL_04498	PWY-7046	4-coumarate degradation (anaerobic)
AXYL_04498	PWY-7094	fatty acid salvage
AXYL_04498	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AXYL_04498	PWY-735	jasmonic acid biosynthesis
AXYL_04498	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AXYL_04500	PWY-1361	benzoyl-CoA degradation I (aerobic)
AXYL_04500	PWY-5109	2-methylbutanoate biosynthesis
AXYL_04500	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AXYL_04500	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AXYL_04500	PWY-5177	glutaryl-CoA degradation
AXYL_04500	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AXYL_04500	PWY-6435	4-hydroxybenzoate biosynthesis V
AXYL_04500	PWY-6583	pyruvate fermentation to butanol I
AXYL_04500	PWY-6863	pyruvate fermentation to hexanol
AXYL_04500	PWY-6883	pyruvate fermentation to butanol II
AXYL_04500	PWY-6944	androstenedione degradation
AXYL_04500	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AXYL_04500	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AXYL_04500	PWY-7007	methyl ketone biosynthesis
AXYL_04500	PWY-7046	4-coumarate degradation (anaerobic)
AXYL_04500	PWY-7094	fatty acid salvage
AXYL_04500	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AXYL_04500	PWY-735	jasmonic acid biosynthesis
AXYL_04500	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AXYL_04523	PWY-5331	taurine biosynthesis
AXYL_04536	PWY-2941	L-lysine biosynthesis II
AXYL_04536	PWY-2942	L-lysine biosynthesis III
AXYL_04536	PWY-5097	L-lysine biosynthesis VI
AXYL_04536	PWY-6559	spermidine biosynthesis II
AXYL_04536	PWY-6562	norspermidine biosynthesis
AXYL_04536	PWY-7153	grixazone biosynthesis
AXYL_04538	PWY-4381	fatty acid biosynthesis initiation I
AXYL_04538	PWY-5743	3-hydroxypropanoate cycle
AXYL_04538	PWY-5744	glyoxylate assimilation
AXYL_04538	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AXYL_04538	PWY-6679	jadomycin biosynthesis
AXYL_04538	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AXYL_04548	PWY-6748	nitrate reduction VII (denitrification)
AXYL_04548	PWY-7084	nitrifier denitrification
AXYL_04556	PWY-2301	<i>myo</i>-inositol biosynthesis
AXYL_04556	PWY-4702	phytate degradation I
AXYL_04556	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
AXYL_04596	PWY-2941	L-lysine biosynthesis II
AXYL_04596	PWY-2942	L-lysine biosynthesis III
AXYL_04596	PWY-5097	L-lysine biosynthesis VI
AXYL_04614	PWY-6871	3-methylbutanol biosynthesis
AXYL_04661	PWY-1361	benzoyl-CoA degradation I (aerobic)
AXYL_04661	PWY-5109	2-methylbutanoate biosynthesis
AXYL_04661	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AXYL_04661	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AXYL_04661	PWY-5177	glutaryl-CoA degradation
AXYL_04661	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AXYL_04661	PWY-6435	4-hydroxybenzoate biosynthesis V
AXYL_04661	PWY-6583	pyruvate fermentation to butanol I
AXYL_04661	PWY-6863	pyruvate fermentation to hexanol
AXYL_04661	PWY-6883	pyruvate fermentation to butanol II
AXYL_04661	PWY-6944	androstenedione degradation
AXYL_04661	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AXYL_04661	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AXYL_04661	PWY-7007	methyl ketone biosynthesis
AXYL_04661	PWY-7046	4-coumarate degradation (anaerobic)
AXYL_04661	PWY-7094	fatty acid salvage
AXYL_04661	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AXYL_04661	PWY-735	jasmonic acid biosynthesis
AXYL_04661	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AXYL_04673	PWY-4041	&gamma;-glutamyl cycle
AXYL_04673	PWY-5826	hypoglycin biosynthesis
AXYL_04694	PWY-7533	gliotoxin biosynthesis
AXYL_04697	PWY-4041	&gamma;-glutamyl cycle
AXYL_04697	PWY-5826	hypoglycin biosynthesis
AXYL_04709	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_04709	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_04729	PWY-6803	phosphatidylcholine acyl editing
AXYL_04729	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
AXYL_04729	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
AXYL_04729	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
AXYL_04730	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AXYL_04730	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AXYL_04731	PWY-5692	allantoin degradation to glyoxylate II
AXYL_04731	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
AXYL_04741	PWY-4202	arsenate detoxification I (glutaredoxin)
AXYL_04741	PWY-4621	arsenate detoxification II (glutaredoxin)
AXYL_04778	PWY-4381	fatty acid biosynthesis initiation I
AXYL_04813	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AXYL_04813	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AXYL_04823	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AXYL_04827	PWY-1361	benzoyl-CoA degradation I (aerobic)
AXYL_04827	PWY-5109	2-methylbutanoate biosynthesis
AXYL_04827	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AXYL_04827	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AXYL_04827	PWY-5177	glutaryl-CoA degradation
AXYL_04827	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AXYL_04827	PWY-6435	4-hydroxybenzoate biosynthesis V
AXYL_04827	PWY-6583	pyruvate fermentation to butanol I
AXYL_04827	PWY-6863	pyruvate fermentation to hexanol
AXYL_04827	PWY-6883	pyruvate fermentation to butanol II
AXYL_04827	PWY-6944	androstenedione degradation
AXYL_04827	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AXYL_04827	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AXYL_04827	PWY-7007	methyl ketone biosynthesis
AXYL_04827	PWY-7046	4-coumarate degradation (anaerobic)
AXYL_04827	PWY-7094	fatty acid salvage
AXYL_04827	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AXYL_04827	PWY-735	jasmonic acid biosynthesis
AXYL_04827	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AXYL_04856	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AXYL_04858	PWY-6891	thiazole biosynthesis II (Bacillus)
AXYL_04858	PWY-6892	thiazole biosynthesis I (E. coli)
AXYL_04858	PWY-7560	methylerythritol phosphate pathway II
AXYL_04862	PWY-1361	benzoyl-CoA degradation I (aerobic)
AXYL_04862	PWY-5109	2-methylbutanoate biosynthesis
AXYL_04862	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AXYL_04862	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AXYL_04862	PWY-5177	glutaryl-CoA degradation
AXYL_04862	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AXYL_04862	PWY-6435	4-hydroxybenzoate biosynthesis V
AXYL_04862	PWY-6583	pyruvate fermentation to butanol I
AXYL_04862	PWY-6863	pyruvate fermentation to hexanol
AXYL_04862	PWY-6883	pyruvate fermentation to butanol II
AXYL_04862	PWY-6944	androstenedione degradation
AXYL_04862	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AXYL_04862	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AXYL_04862	PWY-7007	methyl ketone biosynthesis
AXYL_04862	PWY-7046	4-coumarate degradation (anaerobic)
AXYL_04862	PWY-7094	fatty acid salvage
AXYL_04862	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AXYL_04862	PWY-735	jasmonic acid biosynthesis
AXYL_04862	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AXYL_04873	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AXYL_04890	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AXYL_04890	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AXYL_04904	PWY-5392	reductive TCA cycle II
AXYL_04904	PWY-5537	pyruvate fermentation to acetate V
AXYL_04904	PWY-5538	pyruvate fermentation to acetate VI
AXYL_04904	PWY-5690	TCA cycle II (plants and fungi)
AXYL_04904	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_04904	PWY-6728	methylaspartate cycle
AXYL_04904	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_04904	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AXYL_04940	PWY-5392	reductive TCA cycle II
AXYL_04940	PWY-5537	pyruvate fermentation to acetate V
AXYL_04940	PWY-5538	pyruvate fermentation to acetate VI
AXYL_04940	PWY-5690	TCA cycle II (plants and fungi)
AXYL_04940	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_04940	PWY-6728	methylaspartate cycle
AXYL_04940	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_04940	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AXYL_04951	PWY-5392	reductive TCA cycle II
AXYL_04951	PWY-5537	pyruvate fermentation to acetate V
AXYL_04951	PWY-5538	pyruvate fermentation to acetate VI
AXYL_04951	PWY-5690	TCA cycle II (plants and fungi)
AXYL_04951	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_04951	PWY-6728	methylaspartate cycle
AXYL_04951	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_04951	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AXYL_04977	PWY-6749	CMP-legionaminate biosynthesis I
AXYL_04978	PWY-6614	tetrahydrofolate biosynthesis
AXYL_04992	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AXYL_04992	PWY-5686	UMP biosynthesis
AXYL_04992	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AXYL_04993	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AXYL_04993	PWY-5686	UMP biosynthesis
AXYL_04993	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AXYL_04994	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AXYL_04994	PWY-5723	Rubisco shunt
AXYL_05003	PWY-5692	allantoin degradation to glyoxylate II
AXYL_05003	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
AXYL_05030	PWY-1361	benzoyl-CoA degradation I (aerobic)
AXYL_05031	PWY-1361	benzoyl-CoA degradation I (aerobic)
AXYL_05032	PWY-1361	benzoyl-CoA degradation I (aerobic)
AXYL_05033	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AXYL_05064	PWY-6123	inosine-5'-phosphate biosynthesis I
AXYL_05064	PWY-6124	inosine-5'-phosphate biosynthesis II
AXYL_05064	PWY-7234	inosine-5'-phosphate biosynthesis III
AXYL_05065	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AXYL_05066	PWY-1042	glycolysis IV (plant cytosol)
AXYL_05066	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AXYL_05066	PWY-5484	glycolysis II (from fructose 6-phosphate)
AXYL_05066	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AXYL_05066	PWY-7385	1,3-propanediol biosynthesis (engineered)
AXYL_05072	PWY-7399	methylphosphonate degradation II
AXYL_05073	PWY-7399	methylphosphonate degradation II
AXYL_05075	PWY-7399	methylphosphonate degradation II
AXYL_05078	PWY-7399	methylphosphonate degradation II
AXYL_05081	PWY-5532	adenosine nucleotides degradation IV
AXYL_05082	PWY-5532	adenosine nucleotides degradation IV
AXYL_05084	PWY-4041	&gamma;-glutamyl cycle
AXYL_05084	PWY-5826	hypoglycin biosynthesis
AXYL_05090	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AXYL_05111	PWY-1281	sulfoacetaldehyde degradation I
AXYL_05111	PWY-5482	pyruvate fermentation to acetate II
AXYL_05111	PWY-5485	pyruvate fermentation to acetate IV
AXYL_05111	PWY-5497	purine nucleobases degradation II (anaerobic)
AXYL_05111	PWY-6637	sulfolactate degradation II
AXYL_05112	PWY-5482	pyruvate fermentation to acetate II
AXYL_05112	PWY-5485	pyruvate fermentation to acetate IV
AXYL_05112	PWY-5497	purine nucleobases degradation II (anaerobic)
AXYL_05115	PWY-1042	glycolysis IV (plant cytosol)
AXYL_05115	PWY-5484	glycolysis II (from fructose 6-phosphate)
AXYL_05115	PWY-6886	1-butanol autotrophic biosynthesis
AXYL_05115	PWY-6901	superpathway of glucose and xylose degradation
AXYL_05115	PWY-7003	glycerol degradation to butanol
AXYL_05116	PWY-1042	glycolysis IV (plant cytosol)
AXYL_05116	PWY-5484	glycolysis II (from fructose 6-phosphate)
AXYL_05116	PWY-6901	superpathway of glucose and xylose degradation
AXYL_05116	PWY-7003	glycerol degradation to butanol
AXYL_05117	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AXYL_05117	PWY-5723	Rubisco shunt
AXYL_05117	PWY-6891	thiazole biosynthesis II (Bacillus)
AXYL_05117	PWY-6892	thiazole biosynthesis I (E. coli)
AXYL_05117	PWY-6901	superpathway of glucose and xylose degradation
AXYL_05117	PWY-7560	methylerythritol phosphate pathway II
AXYL_05121	PWY-1281	sulfoacetaldehyde degradation I
AXYL_05121	PWY-5482	pyruvate fermentation to acetate II
AXYL_05121	PWY-5485	pyruvate fermentation to acetate IV
AXYL_05121	PWY-5497	purine nucleobases degradation II (anaerobic)
AXYL_05121	PWY-6637	sulfolactate degradation II
AXYL_05137	PWY-5194	siroheme biosynthesis
AXYL_05137	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AXYL_05138	PWY-7183	pyrimidine nucleobases salvage I
AXYL_05139	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AXYL_05139	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AXYL_05142	PWY-6700	queuosine biosynthesis
AXYL_05143	PWY-6700	queuosine biosynthesis
AXYL_05145	PWY-4381	fatty acid biosynthesis initiation I
AXYL_05145	PWY-5743	3-hydroxypropanoate cycle
AXYL_05145	PWY-5744	glyoxylate assimilation
AXYL_05145	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AXYL_05145	PWY-6679	jadomycin biosynthesis
AXYL_05145	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AXYL_05174	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AXYL_05183	PWY-6823	molybdenum cofactor biosynthesis
AXYL_05185	PWY-6823	molybdenum cofactor biosynthesis
AXYL_05186	PWY-5964	guanylyl molybdenum cofactor biosynthesis
AXYL_05187	PWY-6823	molybdenum cofactor biosynthesis
AXYL_05191	PWY-1881	formate oxidation to CO<sub>2</sub>
AXYL_05191	PWY-5497	purine nucleobases degradation II (anaerobic)
AXYL_05191	PWY-6696	oxalate degradation III
AXYL_05200	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_05200	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_05232	PWY-5169	cyanurate degradation
AXYL_05232	PWY-5703	urea degradation I
AXYL_05233	PWY-5169	cyanurate degradation
AXYL_05233	PWY-5703	urea degradation I
AXYL_05233	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AXYL_05242	PWY-4202	arsenate detoxification I (glutaredoxin)
AXYL_05242	PWY-4621	arsenate detoxification II (glutaredoxin)
AXYL_05263	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AXYL_05263	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AXYL_05266	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AXYL_05288	PWY-3781	aerobic respiration I (cytochrome c)
AXYL_05288	PWY-4521	arsenite oxidation I (respiratory)
AXYL_05288	PWY-6692	Fe(II) oxidation
AXYL_05288	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AXYL_05288	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
AXYL_05297	PWY-1281	sulfoacetaldehyde degradation I
AXYL_05297	PWY-5482	pyruvate fermentation to acetate II
AXYL_05297	PWY-5485	pyruvate fermentation to acetate IV
AXYL_05297	PWY-5497	purine nucleobases degradation II (anaerobic)
AXYL_05297	PWY-6637	sulfolactate degradation II
AXYL_05337	PWY-7310	D-glucosaminate degradation
AXYL_05362	PWY-3781	aerobic respiration I (cytochrome c)
AXYL_05362	PWY-4521	arsenite oxidation I (respiratory)
AXYL_05362	PWY-6692	Fe(II) oxidation
AXYL_05362	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AXYL_05362	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
AXYL_05395	PWY-1361	benzoyl-CoA degradation I (aerobic)
AXYL_05395	PWY-5109	2-methylbutanoate biosynthesis
AXYL_05395	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AXYL_05395	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AXYL_05395	PWY-5177	glutaryl-CoA degradation
AXYL_05395	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AXYL_05395	PWY-6435	4-hydroxybenzoate biosynthesis V
AXYL_05395	PWY-6583	pyruvate fermentation to butanol I
AXYL_05395	PWY-6863	pyruvate fermentation to hexanol
AXYL_05395	PWY-6883	pyruvate fermentation to butanol II
AXYL_05395	PWY-6944	androstenedione degradation
AXYL_05395	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AXYL_05395	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AXYL_05395	PWY-7007	methyl ketone biosynthesis
AXYL_05395	PWY-7046	4-coumarate degradation (anaerobic)
AXYL_05395	PWY-7094	fatty acid salvage
AXYL_05395	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AXYL_05395	PWY-735	jasmonic acid biosynthesis
AXYL_05395	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AXYL_05431	PWY-5274	sulfide oxidation II (sulfide dehydrogenase)
AXYL_05470	PWY-5392	reductive TCA cycle II
AXYL_05470	PWY-5537	pyruvate fermentation to acetate V
AXYL_05470	PWY-5538	pyruvate fermentation to acetate VI
AXYL_05470	PWY-5690	TCA cycle II (plants and fungi)
AXYL_05470	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_05470	PWY-6728	methylaspartate cycle
AXYL_05470	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_05470	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AXYL_05477	PWY-723	alkylnitronates degradation
AXYL_05485	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AXYL_05485	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AXYL_05506	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AXYL_05542	PWY-5647	2-nitrobenzoate degradation I
AXYL_05542	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AXYL_05542	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AXYL_05542	PWY-6505	L-tryptophan degradation XII (Geobacillus)
AXYL_05555	PWY-7039	phosphatidate metabolism, as a signaling molecule
AXYL_05557	PWY-5686	UMP biosynthesis
AXYL_05560	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AXYL_05560	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AXYL_05560	PWY-6896	thiamin salvage I
AXYL_05560	PWY-6897	thiamin salvage II
AXYL_05562	PWY-6167	flavin biosynthesis II (archaea)
AXYL_05562	PWY-6168	flavin biosynthesis III (fungi)
AXYL_05563	PWY-6167	flavin biosynthesis II (archaea)
AXYL_05563	PWY-6168	flavin biosynthesis III (fungi)
AXYL_05563	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AXYL_05589	PWY-7560	methylerythritol phosphate pathway II
AXYL_05605	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_05605	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_05607	PWY-6749	CMP-legionaminate biosynthesis I
AXYL_05608	PWY-3801	sucrose degradation II (sucrose synthase)
AXYL_05608	PWY-5054	sorbitol biosynthesis I
AXYL_05608	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AXYL_05608	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AXYL_05608	PWY-5659	GDP-mannose biosynthesis
AXYL_05608	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AXYL_05608	PWY-621	sucrose degradation III (sucrose invertase)
AXYL_05608	PWY-622	starch biosynthesis
AXYL_05608	PWY-6531	mannitol cycle
AXYL_05608	PWY-6981	chitin biosynthesis
AXYL_05608	PWY-7238	sucrose biosynthesis II
AXYL_05608	PWY-7347	sucrose biosynthesis III
AXYL_05608	PWY-7385	1,3-propanediol biosynthesis (engineered)
AXYL_05617	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AXYL_05617	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AXYL_05617	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AXYL_05620	PWY-3841	folate transformations II
AXYL_05620	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AXYL_05620	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AXYL_05620	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AXYL_05620	PWY-7199	pyrimidine deoxyribonucleosides salvage
AXYL_05620	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AXYL_05622	PWY-3841	folate transformations II
AXYL_05622	PWY-6614	tetrahydrofolate biosynthesis
AXYL_05625	PWY-5642	2,4-dinitrotoluene degradation
AXYL_05625	PWY-6373	acrylate degradation
AXYL_05631	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AXYL_05638	PWY-6854	ethylene biosynthesis III (microbes)
AXYL_05645	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AXYL_05665	PWY-5676	acetyl-CoA fermentation to butanoate II
AXYL_05665	PWY-5741	ethylmalonyl-CoA pathway
AXYL_05665	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AXYL_05707	PWY-3561	choline biosynthesis III
AXYL_05707	PWY-7039	phosphatidate metabolism, as a signaling molecule
AXYL_05721	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AXYL_05721	PWY-6153	autoinducer AI-2 biosynthesis I
AXYL_05721	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
AXYL_05748	PWY-4983	L-citrulline-nitric oxide cycle
AXYL_05748	PWY-4984	urea cycle
AXYL_05748	PWY-5	canavanine biosynthesis
AXYL_05748	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AXYL_05748	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AXYL_05755	PWY-6654	phosphopantothenate biosynthesis III
AXYL_05760	PWY-1622	formaldehyde assimilation I (serine pathway)
AXYL_05760	PWY-181	photorespiration
AXYL_05760	PWY-2161	folate polyglutamylation
AXYL_05760	PWY-2201	folate transformations I
AXYL_05760	PWY-3661	glycine betaine degradation I
AXYL_05760	PWY-3661-1	glycine betaine degradation II (mammalian)
AXYL_05760	PWY-3841	folate transformations II
AXYL_05760	PWY-5497	purine nucleobases degradation II (anaerobic)
AXYL_05771	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AXYL_05775	PWY-5669	phosphatidylethanolamine biosynthesis I
AXYL_05784	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_05784	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_05788	PWY-4041	&gamma;-glutamyl cycle
AXYL_05788	PWY-5826	hypoglycin biosynthesis
AXYL_05794	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_05794	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AXYL_05794	PWY-6638	sulfolactate degradation III
AXYL_05794	PWY-6642	(<i>R</i>)-cysteate degradation
AXYL_05794	PWY-6643	coenzyme M biosynthesis II
AXYL_05794	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AXYL_05794	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AXYL_05794	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AXYL_05811	PWY-6936	seleno-amino acid biosynthesis
AXYL_05826	PWY-7130	L-glucose degradation
AXYL_05827	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AXYL_05827	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AXYL_05827	PWY-7242	D-fructuronate degradation
AXYL_05827	PWY-7310	D-glucosaminate degradation
AXYL_05838	PWY-5392	reductive TCA cycle II
AXYL_05838	PWY-5537	pyruvate fermentation to acetate V
AXYL_05838	PWY-5538	pyruvate fermentation to acetate VI
AXYL_05838	PWY-5690	TCA cycle II (plants and fungi)
AXYL_05838	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_05838	PWY-6728	methylaspartate cycle
AXYL_05838	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_05838	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AXYL_05864	PWY-4261	glycerol degradation I
AXYL_05870	PWY-5694	allantoin degradation to glyoxylate I
AXYL_05870	PWY-5705	allantoin degradation to glyoxylate III
AXYL_05894	PWY-3461	L-tyrosine biosynthesis II
AXYL_05894	PWY-3462	L-phenylalanine biosynthesis II
AXYL_05894	PWY-6120	L-tyrosine biosynthesis III
AXYL_05894	PWY-6627	salinosporamide A biosynthesis
AXYL_05912	PWY-4381	fatty acid biosynthesis initiation I
AXYL_05912	PWY-5743	3-hydroxypropanoate cycle
AXYL_05912	PWY-5744	glyoxylate assimilation
AXYL_05912	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AXYL_05912	PWY-6679	jadomycin biosynthesis
AXYL_05912	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AXYL_05925	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AXYL_05935	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AXYL_05935	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AXYL_05937	PWY-5101	L-isoleucine biosynthesis II
AXYL_05937	PWY-5103	L-isoleucine biosynthesis III
AXYL_05937	PWY-5104	L-isoleucine biosynthesis IV
AXYL_05937	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AXYL_05942	PWY-6703	preQ<sub>0</sub> biosynthesis
AXYL_05943	PWY-1622	formaldehyde assimilation I (serine pathway)
AXYL_05943	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AXYL_05943	PWY-5913	TCA cycle VI (obligate autotrophs)
AXYL_05943	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AXYL_05943	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
AXYL_05943	PWY-6549	L-glutamine biosynthesis III
AXYL_05943	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AXYL_05943	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AXYL_05943	PWY-7124	ethylene biosynthesis V (engineered)
AXYL_05947	PWY-1361	benzoyl-CoA degradation I (aerobic)
AXYL_05947	PWY-5109	2-methylbutanoate biosynthesis
AXYL_05947	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AXYL_05947	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AXYL_05947	PWY-5177	glutaryl-CoA degradation
AXYL_05947	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AXYL_05947	PWY-6435	4-hydroxybenzoate biosynthesis V
AXYL_05947	PWY-6583	pyruvate fermentation to butanol I
AXYL_05947	PWY-6863	pyruvate fermentation to hexanol
AXYL_05947	PWY-6883	pyruvate fermentation to butanol II
AXYL_05947	PWY-6944	androstenedione degradation
AXYL_05947	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AXYL_05947	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AXYL_05947	PWY-7007	methyl ketone biosynthesis
AXYL_05947	PWY-7046	4-coumarate degradation (anaerobic)
AXYL_05947	PWY-7094	fatty acid salvage
AXYL_05947	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AXYL_05947	PWY-735	jasmonic acid biosynthesis
AXYL_05947	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AXYL_05953	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AXYL_05955	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AXYL_05956	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AXYL_05956	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AXYL_05961	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AXYL_06063	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
AXYL_06064	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_06064	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_06070	PWY-1622	formaldehyde assimilation I (serine pathway)
AXYL_06070	PWY-5484	glycolysis II (from fructose 6-phosphate)
AXYL_06074	PWY-5667	CDP-diacylglycerol biosynthesis I
AXYL_06074	PWY-5981	CDP-diacylglycerol biosynthesis III
AXYL_06079	PWY-6840	homoglutathione biosynthesis
AXYL_06079	PWY-7255	ergothioneine biosynthesis I (bacteria)
AXYL_06089	PWY-5743	3-hydroxypropanoate cycle
AXYL_06089	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AXYL_06089	PWY-6728	methylaspartate cycle
AXYL_06089	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AXYL_06099	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
AXYL_06099	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AXYL_06099	PWY-6268	adenosylcobalamin salvage from cobalamin
AXYL_06099	PWY-6269	adenosylcobalamin salvage from cobinamide II
AXYL_06111	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AXYL_06111	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AXYL_06115	PWY-5074	mevalonate degradation
AXYL_06119	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AXYL_06121	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AXYL_06121	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AXYL_06129	PWY-6605	adenine and adenosine salvage II
AXYL_06129	PWY-6610	adenine and adenosine salvage IV
AXYL_06132	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
AXYL_06138	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AXYL_06138	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
AXYL_06153	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
AXYL_06157	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AXYL_06157	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AXYL_06168	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AXYL_06172	PWY-5686	UMP biosynthesis
AXYL_06210	PWY-6899	base-degraded thiamin salvage
AXYL_06210	PWY-7356	thiamin salvage IV (yeast)
AXYL_06230	PWY-2201	folate transformations I
AXYL_06230	PWY-3841	folate transformations II
AXYL_06232	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AXYL_06242	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AXYL_06243	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AXYL_06243	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
AXYL_06246	PWY-2941	L-lysine biosynthesis II
AXYL_06246	PWY-5097	L-lysine biosynthesis VI
AXYL_06260	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
AXYL_06260	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AXYL_06260	PWY-6268	adenosylcobalamin salvage from cobalamin
AXYL_06260	PWY-6269	adenosylcobalamin salvage from cobinamide II
AXYL_06263	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AXYL_06263	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
AXYL_06263	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AXYL_06266	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AXYL_06266	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
AXYL_06269	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AXYL_06269	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AXYL_06277	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AXYL_06277	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
AXYL_06278	PWY-3961	phosphopantothenate biosynthesis II
AXYL_06294	PWY-3821	galactose degradation III
AXYL_06294	PWY-6317	galactose degradation I (Leloir pathway)
AXYL_06294	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AXYL_06294	PWY-6527	stachyose degradation
AXYL_06294	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AXYL_06294	PWY-7344	UDP-D-galactose biosynthesis
AXYL_06296	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
AXYL_06299	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AXYL_06299	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AXYL_06299	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AXYL_06302	PWY-3221	dTDP-L-rhamnose biosynthesis II
AXYL_06302	PWY-6808	dTDP-D-forosamine biosynthesis
AXYL_06302	PWY-6942	dTDP-D-desosamine biosynthesis
AXYL_06302	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AXYL_06302	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AXYL_06302	PWY-6974	dTDP-L-olivose biosynthesis
AXYL_06302	PWY-6976	dTDP-L-mycarose biosynthesis
AXYL_06302	PWY-7104	dTDP-L-megosamine biosynthesis
AXYL_06302	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AXYL_06302	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AXYL_06302	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AXYL_06302	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AXYL_06302	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AXYL_06302	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AXYL_06302	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AXYL_06302	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AXYL_06306	PWY-3221	dTDP-L-rhamnose biosynthesis II
AXYL_06306	PWY-6808	dTDP-D-forosamine biosynthesis
AXYL_06306	PWY-6942	dTDP-D-desosamine biosynthesis
AXYL_06306	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AXYL_06306	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AXYL_06306	PWY-6974	dTDP-L-olivose biosynthesis
AXYL_06306	PWY-6976	dTDP-L-mycarose biosynthesis
AXYL_06306	PWY-7104	dTDP-L-megosamine biosynthesis
AXYL_06306	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AXYL_06306	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AXYL_06306	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AXYL_06306	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AXYL_06306	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AXYL_06306	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AXYL_06306	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AXYL_06306	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AXYL_06313	PWY-6891	thiazole biosynthesis II (Bacillus)
AXYL_06313	PWY-6892	thiazole biosynthesis I (E. coli)
AXYL_06313	PWY-7560	methylerythritol phosphate pathway II
AXYL_06326	PWY-4381	fatty acid biosynthesis initiation I
AXYL_06329	PWY-2941	L-lysine biosynthesis II
AXYL_06329	PWY-2942	L-lysine biosynthesis III
AXYL_06329	PWY-5097	L-lysine biosynthesis VI
AXYL_06338	PWY-6728	methylaspartate cycle
AXYL_06338	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AXYL_06338	PWY-7118	chitin degradation to ethanol
AXYL_06338	PWY-7294	xylose degradation IV
AXYL_06338	PWY-7295	L-arabinose degradation IV
AXYL_06375	PWY-6164	3-dehydroquinate biosynthesis I
AXYL_06376	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AXYL_06380	PWY-2941	L-lysine biosynthesis II
AXYL_06380	PWY-2942	L-lysine biosynthesis III
AXYL_06380	PWY-5097	L-lysine biosynthesis VI
AXYL_06408	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AXYL_06408	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AXYL_06484	PWY-381	nitrate reduction II (assimilatory)
AXYL_06484	PWY-5675	nitrate reduction V (assimilatory)
AXYL_06484	PWY-6549	L-glutamine biosynthesis III
AXYL_06484	PWY-6963	ammonia assimilation cycle I
AXYL_06484	PWY-6964	ammonia assimilation cycle II
AXYL_06491	PWY-6936	seleno-amino acid biosynthesis
AXYL_06528	PWY-5506	methanol oxidation to formaldehyde IV
