Afer_0037	PWY-2301	<i>myo</i>-inositol biosynthesis
Afer_0037	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
Afer_0037	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
Afer_0037	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
Afer_0037	PWY-6664	di-myo-inositol phosphate biosynthesis
Afer_0040	PWY-6654	phosphopantothenate biosynthesis III
Afer_0052	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Afer_0084	PWY-6610	adenine and adenosine salvage IV
Afer_0086	PWY-5958	acridone alkaloid biosynthesis
Afer_0086	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Afer_0086	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Afer_0097	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Afer_0101	PWY-1622	formaldehyde assimilation I (serine pathway)
Afer_0101	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Afer_0101	PWY-5913	TCA cycle VI (obligate autotrophs)
Afer_0101	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Afer_0101	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Afer_0101	PWY-6549	L-glutamine biosynthesis III
Afer_0101	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Afer_0101	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Afer_0101	PWY-7124	ethylene biosynthesis V (engineered)
Afer_0104	PWY-5743	3-hydroxypropanoate cycle
Afer_0104	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Afer_0104	PWY-6728	methylaspartate cycle
Afer_0104	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Afer_0111	PWY-2941	L-lysine biosynthesis II
Afer_0111	PWY-2942	L-lysine biosynthesis III
Afer_0111	PWY-5097	L-lysine biosynthesis VI
Afer_0111	PWY-6559	spermidine biosynthesis II
Afer_0111	PWY-6562	norspermidine biosynthesis
Afer_0111	PWY-7153	grixazone biosynthesis
Afer_0112	PWY-2941	L-lysine biosynthesis II
Afer_0112	PWY-2942	L-lysine biosynthesis III
Afer_0112	PWY-5097	L-lysine biosynthesis VI
Afer_0112	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Afer_0112	PWY-6559	spermidine biosynthesis II
Afer_0112	PWY-6562	norspermidine biosynthesis
Afer_0112	PWY-7153	grixazone biosynthesis
Afer_0112	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Afer_0119	PWY-5532	adenosine nucleotides degradation IV
Afer_0119	PWY-5723	Rubisco shunt
Afer_0120	PWY-5532	adenosine nucleotides degradation IV
Afer_0120	PWY-5723	Rubisco shunt
Afer_0128	PWY-7158	L-phenylalanine degradation V
Afer_0140	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Afer_0162	PWY-5350	thiosulfate disproportionation III (rhodanese)
Afer_0165	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Afer_0165	PWY-5723	Rubisco shunt
Afer_0166	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Afer_0166	PWY-5484	glycolysis II (from fructose 6-phosphate)
Afer_0166	PWY-5723	Rubisco shunt
Afer_0166	PWY-6891	thiazole biosynthesis II (Bacillus)
Afer_0166	PWY-6892	thiazole biosynthesis I (E. coli)
Afer_0166	PWY-6901	superpathway of glucose and xylose degradation
Afer_0166	PWY-7560	methylerythritol phosphate pathway II
Afer_0167	PWY-5723	Rubisco shunt
Afer_0177	PWY-1042	glycolysis IV (plant cytosol)
Afer_0177	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Afer_0177	PWY-5484	glycolysis II (from fructose 6-phosphate)
Afer_0177	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Afer_0177	PWY-7385	1,3-propanediol biosynthesis (engineered)
Afer_0190	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Afer_0222	PWY-1361	benzoyl-CoA degradation I (aerobic)
Afer_0222	PWY-5109	2-methylbutanoate biosynthesis
Afer_0222	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Afer_0222	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Afer_0222	PWY-5177	glutaryl-CoA degradation
Afer_0222	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Afer_0222	PWY-6435	4-hydroxybenzoate biosynthesis V
Afer_0222	PWY-6583	pyruvate fermentation to butanol I
Afer_0222	PWY-6863	pyruvate fermentation to hexanol
Afer_0222	PWY-6883	pyruvate fermentation to butanol II
Afer_0222	PWY-6944	androstenedione degradation
Afer_0222	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Afer_0222	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Afer_0222	PWY-7007	methyl ketone biosynthesis
Afer_0222	PWY-7046	4-coumarate degradation (anaerobic)
Afer_0222	PWY-7094	fatty acid salvage
Afer_0222	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Afer_0222	PWY-735	jasmonic acid biosynthesis
Afer_0222	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Afer_0223	PWY-5743	3-hydroxypropanoate cycle
Afer_0223	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Afer_0223	PWY-6728	methylaspartate cycle
Afer_0223	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Afer_0225	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Afer_0231	PWY-4381	fatty acid biosynthesis initiation I
Afer_0231	PWY-5743	3-hydroxypropanoate cycle
Afer_0231	PWY-5744	glyoxylate assimilation
Afer_0231	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Afer_0231	PWY-6679	jadomycin biosynthesis
Afer_0231	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Afer_0232	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Afer_0242	PWY-381	nitrate reduction II (assimilatory)
Afer_0242	PWY-5675	nitrate reduction V (assimilatory)
Afer_0242	PWY-6549	L-glutamine biosynthesis III
Afer_0242	PWY-6963	ammonia assimilation cycle I
Afer_0242	PWY-6964	ammonia assimilation cycle II
Afer_0243	PWY-381	nitrate reduction II (assimilatory)
Afer_0243	PWY-5675	nitrate reduction V (assimilatory)
Afer_0243	PWY-6549	L-glutamine biosynthesis III
Afer_0243	PWY-6963	ammonia assimilation cycle I
Afer_0243	PWY-6964	ammonia assimilation cycle II
Afer_0246	PWY-5381	pyridine nucleotide cycling (plants)
Afer_0246	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Afer_0249	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Afer_0250	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Afer_0250	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Afer_0251	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Afer_0251	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Afer_0251	PWY-5194	siroheme biosynthesis
Afer_0251	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Afer_0252	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Afer_0252	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Afer_0253	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Afer_0255	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Afer_0255	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Afer_0271	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Afer_0271	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Afer_0272	PWY-5022	4-aminobutanoate degradation V
Afer_0272	PWY-6728	methylaspartate cycle
Afer_0272	PWY-7126	ethylene biosynthesis IV
Afer_0273	PWY-40	putrescine biosynthesis I
Afer_0273	PWY-6305	putrescine biosynthesis IV
Afer_0312	PWY-3781	aerobic respiration I (cytochrome c)
Afer_0312	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Afer_0312	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Afer_0312	PWY-5690	TCA cycle II (plants and fungi)
Afer_0312	PWY-6728	methylaspartate cycle
Afer_0312	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Afer_0312	PWY-7254	TCA cycle VII (acetate-producers)
Afer_0312	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Afer_0313	PWY-3781	aerobic respiration I (cytochrome c)
Afer_0313	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Afer_0313	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Afer_0313	PWY-5690	TCA cycle II (plants and fungi)
Afer_0313	PWY-6728	methylaspartate cycle
Afer_0313	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Afer_0313	PWY-7254	TCA cycle VII (acetate-producers)
Afer_0313	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Afer_0319	PWY-5392	reductive TCA cycle II
Afer_0319	PWY-5537	pyruvate fermentation to acetate V
Afer_0319	PWY-5538	pyruvate fermentation to acetate VI
Afer_0319	PWY-5690	TCA cycle II (plants and fungi)
Afer_0319	PWY-5913	TCA cycle VI (obligate autotrophs)
Afer_0319	PWY-6728	methylaspartate cycle
Afer_0319	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Afer_0319	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Afer_0320	PWY-5392	reductive TCA cycle II
Afer_0320	PWY-5537	pyruvate fermentation to acetate V
Afer_0320	PWY-5538	pyruvate fermentation to acetate VI
Afer_0320	PWY-5690	TCA cycle II (plants and fungi)
Afer_0320	PWY-5913	TCA cycle VI (obligate autotrophs)
Afer_0320	PWY-6728	methylaspartate cycle
Afer_0320	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Afer_0320	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Afer_0321	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Afer_0321	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Afer_0322	PWY-6123	inosine-5'-phosphate biosynthesis I
Afer_0322	PWY-6124	inosine-5'-phosphate biosynthesis II
Afer_0322	PWY-7234	inosine-5'-phosphate biosynthesis III
Afer_0323	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Afer_0323	PWY-2201	folate transformations I
Afer_0323	PWY-3841	folate transformations II
Afer_0323	PWY-5030	L-histidine degradation III
Afer_0323	PWY-5497	purine nucleobases degradation II (anaerobic)
Afer_0323	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Afer_0324	PWY-2201	folate transformations I
Afer_0324	PWY-3841	folate transformations II
Afer_0329	PWY-5030	L-histidine degradation III
Afer_0331	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Afer_0331	PWY-5739	GDP-D-perosamine biosynthesis
Afer_0331	PWY-5740	GDP-L-colitose biosynthesis
Afer_0331	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Afer_0355	PWY-6854	ethylene biosynthesis III (microbes)
Afer_0357	PWY-3341	L-proline biosynthesis III
Afer_0357	PWY-4981	L-proline biosynthesis II (from arginine)
Afer_0357	PWY-6344	L-ornithine degradation II (Stickland reaction)
Afer_0360	PWY-5941	glycogen degradation II (eukaryotic)
Afer_0360	PWY-6724	starch degradation II
Afer_0360	PWY-6737	starch degradation V
Afer_0360	PWY-7238	sucrose biosynthesis II
Afer_0419	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Afer_0431	PWY-6749	CMP-legionaminate biosynthesis I
Afer_0432	PWY-6749	CMP-legionaminate biosynthesis I
Afer_0435	PWY-6012	acyl carrier protein metabolism I
Afer_0435	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Afer_0436	PWY-6938	NADH repair
Afer_0437	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Afer_0460	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Afer_0479	PWY-6891	thiazole biosynthesis II (Bacillus)
Afer_0479	PWY-6892	thiazole biosynthesis I (E. coli)
Afer_0479	PWY-7560	methylerythritol phosphate pathway II
Afer_0480	PWY-5943	&beta;-carotene biosynthesis
Afer_0480	PWY-5947	lutein biosynthesis
Afer_0481	PWY-5943	&beta;-carotene biosynthesis
Afer_0481	PWY-5947	lutein biosynthesis
Afer_0486	PWY-6823	molybdenum cofactor biosynthesis
Afer_0487	PWY-3801	sucrose degradation II (sucrose synthase)
Afer_0487	PWY-6527	stachyose degradation
Afer_0487	PWY-6981	chitin biosynthesis
Afer_0487	PWY-7238	sucrose biosynthesis II
Afer_0487	PWY-7343	UDP-glucose biosynthesis
Afer_0496	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Afer_0499	PWY-6317	galactose degradation I (Leloir pathway)
Afer_0499	PWY-6527	stachyose degradation
Afer_0500	PWY-6823	molybdenum cofactor biosynthesis
Afer_0500	PWY-6891	thiazole biosynthesis II (Bacillus)
Afer_0500	PWY-6892	thiazole biosynthesis I (E. coli)
Afer_0500	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Afer_0526	PWY-7560	methylerythritol phosphate pathway II
Afer_0536	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Afer_0536	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Afer_0536	PWY-6269	adenosylcobalamin salvage from cobinamide II
Afer_0537	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Afer_0537	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Afer_0537	PWY-6269	adenosylcobalamin salvage from cobinamide II
Afer_0567	PWY-6823	molybdenum cofactor biosynthesis
Afer_0567	PWY-6891	thiazole biosynthesis II (Bacillus)
Afer_0567	PWY-6892	thiazole biosynthesis I (E. coli)
Afer_0567	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Afer_0582	PWY-4381	fatty acid biosynthesis initiation I
Afer_0582	PWY-5743	3-hydroxypropanoate cycle
Afer_0582	PWY-5744	glyoxylate assimilation
Afer_0582	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Afer_0582	PWY-6679	jadomycin biosynthesis
Afer_0582	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Afer_0584	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Afer_0584	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Afer_0590	PWY-5198	factor 420 biosynthesis
Afer_0598	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Afer_0598	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Afer_0599	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Afer_0599	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Afer_0631	PWY-7560	methylerythritol phosphate pathway II
Afer_0633	PWY-7560	methylerythritol phosphate pathway II
Afer_0641	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Afer_0641	PWY-6167	flavin biosynthesis II (archaea)
Afer_0641	PWY-6168	flavin biosynthesis III (fungi)
Afer_0645	PWY-2941	L-lysine biosynthesis II
Afer_0645	PWY-2942	L-lysine biosynthesis III
Afer_0645	PWY-5097	L-lysine biosynthesis VI
Afer_0646	PWY-2941	L-lysine biosynthesis II
Afer_0646	PWY-2942	L-lysine biosynthesis III
Afer_0646	PWY-5097	L-lysine biosynthesis VI
Afer_0651	PWY-5269	cardiolipin biosynthesis II
Afer_0651	PWY-5668	cardiolipin biosynthesis I
Afer_0655	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Afer_0655	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Afer_0656	PWY-2781	<i>cis</i>-zeatin biosynthesis
Afer_0657	PWY-2941	L-lysine biosynthesis II
Afer_0657	PWY-5097	L-lysine biosynthesis VI
Afer_0685	PWY-6825	phosphatidylcholine biosynthesis V
Afer_0692	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Afer_0692	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Afer_0692	PWY-6896	thiamin salvage I
Afer_0692	PWY-6897	thiamin salvage II
Afer_0693	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Afer_0695	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Afer_0695	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Afer_0697	PWY-4041	&gamma;-glutamyl cycle
Afer_0697	PWY-5826	hypoglycin biosynthesis
Afer_0711	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Afer_0711	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Afer_0711	PWY-6897	thiamin salvage II
Afer_0711	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Afer_0711	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Afer_0711	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Afer_0711	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Afer_0713	PWY-6891	thiazole biosynthesis II (Bacillus)
Afer_0713	PWY-6892	thiazole biosynthesis I (E. coli)
Afer_0713	PWY-7560	methylerythritol phosphate pathway II
Afer_0717	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Afer_0717	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Afer_0719	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Afer_0719	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Afer_0719	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Afer_0722	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Afer_0722	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Afer_0722	PWY-6268	adenosylcobalamin salvage from cobalamin
Afer_0722	PWY-6269	adenosylcobalamin salvage from cobinamide II
Afer_0723	PWY-2201	folate transformations I
Afer_0723	PWY-3841	folate transformations II
Afer_0724	PWY-5988	wound-induced proteolysis I
Afer_0724	PWY-6018	seed germination protein turnover
Afer_0726	PWY-5743	3-hydroxypropanoate cycle
Afer_0726	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Afer_0726	PWY-6728	methylaspartate cycle
Afer_0726	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Afer_0727	PWY-7158	L-phenylalanine degradation V
Afer_0731	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Afer_0731	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Afer_0734	PWY-3221	dTDP-L-rhamnose biosynthesis II
Afer_0734	PWY-6808	dTDP-D-forosamine biosynthesis
Afer_0734	PWY-6942	dTDP-D-desosamine biosynthesis
Afer_0734	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Afer_0734	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Afer_0734	PWY-6974	dTDP-L-olivose biosynthesis
Afer_0734	PWY-6976	dTDP-L-mycarose biosynthesis
Afer_0734	PWY-7104	dTDP-L-megosamine biosynthesis
Afer_0734	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Afer_0734	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Afer_0734	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Afer_0734	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Afer_0734	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Afer_0734	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Afer_0734	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Afer_0734	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Afer_0740	PWY-5199	factor 420 polyglutamylation
Afer_0741	PWY-5198	factor 420 biosynthesis
Afer_0764	PWY-2161	folate polyglutamylation
Afer_0765	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Afer_0765	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Afer_0765	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Afer_0765	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Afer_0765	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Afer_0765	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Afer_0765	PWY-7205	CMP phosphorylation
Afer_0765	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Afer_0765	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Afer_0765	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Afer_0765	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Afer_0765	PWY-7224	purine deoxyribonucleosides salvage
Afer_0765	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Afer_0765	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Afer_0790	PWY-5381	pyridine nucleotide cycling (plants)
Afer_0790	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Afer_0792	PWY-6164	3-dehydroquinate biosynthesis I
Afer_0796	PWY-5028	L-histidine degradation II
Afer_0796	PWY-5030	L-histidine degradation III
Afer_0799	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Afer_0802	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Afer_0804	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Afer_0804	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Afer_0804	PWY-6268	adenosylcobalamin salvage from cobalamin
Afer_0804	PWY-6269	adenosylcobalamin salvage from cobinamide II
Afer_0806	PWY-5194	siroheme biosynthesis
Afer_0806	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Afer_0807	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Afer_0821	PWY-1881	formate oxidation to CO<sub>2</sub>
Afer_0821	PWY-5497	purine nucleobases degradation II (anaerobic)
Afer_0821	PWY-6696	oxalate degradation III
Afer_0826	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Afer_0826	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Afer_0842	PWY-5839	menaquinol-7 biosynthesis
Afer_0842	PWY-5844	menaquinol-9 biosynthesis
Afer_0842	PWY-5849	menaquinol-6 biosynthesis
Afer_0842	PWY-5890	menaquinol-10 biosynthesis
Afer_0842	PWY-5891	menaquinol-11 biosynthesis
Afer_0842	PWY-5892	menaquinol-12 biosynthesis
Afer_0842	PWY-5895	menaquinol-13 biosynthesis
Afer_0843	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Afer_0843	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Afer_0843	PWY-5901	2,3-dihydroxybenzoate biosynthesis
Afer_0843	PWY-6406	salicylate biosynthesis I
Afer_0849	PWY-1042	glycolysis IV (plant cytosol)
Afer_0849	PWY-5484	glycolysis II (from fructose 6-phosphate)
Afer_0849	PWY-6901	superpathway of glucose and xylose degradation
Afer_0849	PWY-7003	glycerol degradation to butanol
Afer_0850	PWY-1042	glycolysis IV (plant cytosol)
Afer_0850	PWY-5484	glycolysis II (from fructose 6-phosphate)
Afer_0850	PWY-6886	1-butanol autotrophic biosynthesis
Afer_0850	PWY-6901	superpathway of glucose and xylose degradation
Afer_0850	PWY-7003	glycerol degradation to butanol
Afer_0851	PWY-1042	glycolysis IV (plant cytosol)
Afer_0851	PWY-5484	glycolysis II (from fructose 6-phosphate)
Afer_0851	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Afer_0851	PWY-7003	glycerol degradation to butanol
Afer_0861	PWY-5129	sphingolipid biosynthesis (plants)
Afer_0865	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Afer_0865	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Afer_0865	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Afer_0865	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Afer_0871	PWY-381	nitrate reduction II (assimilatory)
Afer_0871	PWY-5675	nitrate reduction V (assimilatory)
Afer_0871	PWY-6549	L-glutamine biosynthesis III
Afer_0871	PWY-6963	ammonia assimilation cycle I
Afer_0871	PWY-6964	ammonia assimilation cycle II
Afer_0876	PWY-4261	glycerol degradation I
Afer_0880	PWY-4261	glycerol degradation I
Afer_0880	PWY-6118	glycerol-3-phosphate shuttle
Afer_0880	PWY-6952	glycerophosphodiester degradation
Afer_0900	PWY-5198	factor 420 biosynthesis
Afer_0901	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Afer_0901	PWY-6855	chitin degradation I (archaea)
Afer_0901	PWY-6906	chitin derivatives degradation
Afer_0905	PWY-6829	tRNA methylation (yeast)
Afer_0919	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Afer_0942	PWY-5642	2,4-dinitrotoluene degradation
Afer_0942	PWY-6373	acrylate degradation
Afer_0943	PWY-6700	queuosine biosynthesis
Afer_0944	PWY-6700	queuosine biosynthesis
Afer_0954	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Afer_0958	PWY-5316	nicotine biosynthesis
Afer_0958	PWY-5381	pyridine nucleotide cycling (plants)
Afer_0958	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Afer_0958	PWY-7342	superpathway of nicotine biosynthesis
Afer_0960	PWY-5316	nicotine biosynthesis
Afer_0960	PWY-7342	superpathway of nicotine biosynthesis
Afer_1002	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Afer_1002	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Afer_1007	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Afer_1007	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Afer_1008	PWY-3801	sucrose degradation II (sucrose synthase)
Afer_1008	PWY-5054	sorbitol biosynthesis I
Afer_1008	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Afer_1008	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Afer_1008	PWY-5659	GDP-mannose biosynthesis
Afer_1008	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Afer_1008	PWY-621	sucrose degradation III (sucrose invertase)
Afer_1008	PWY-622	starch biosynthesis
Afer_1008	PWY-6531	mannitol cycle
Afer_1008	PWY-6981	chitin biosynthesis
Afer_1008	PWY-7238	sucrose biosynthesis II
Afer_1008	PWY-7347	sucrose biosynthesis III
Afer_1008	PWY-7385	1,3-propanediol biosynthesis (engineered)
Afer_1009	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Afer_1009	PWY-5723	Rubisco shunt
Afer_1025	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Afer_1025	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Afer_1025	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Afer_1025	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Afer_1025	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Afer_1025	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Afer_1025	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Afer_1025	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Afer_1031	PWY-4381	fatty acid biosynthesis initiation I
Afer_1031	PWY-5743	3-hydroxypropanoate cycle
Afer_1031	PWY-5744	glyoxylate assimilation
Afer_1031	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Afer_1031	PWY-6679	jadomycin biosynthesis
Afer_1031	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Afer_1053	PWY-6984	lipoate salvage II
Afer_1053	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Afer_1053	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Afer_1056	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Afer_1056	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Afer_1084	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Afer_1084	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Afer_1086	PWY-4381	fatty acid biosynthesis initiation I
Afer_1091	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Afer_1091	PWY-7494	choline degradation IV
Afer_1103	PWY-5958	acridone alkaloid biosynthesis
Afer_1103	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Afer_1103	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Afer_1114	PWY-1042	glycolysis IV (plant cytosol)
Afer_1114	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Afer_1114	PWY-5484	glycolysis II (from fructose 6-phosphate)
Afer_1114	PWY-5723	Rubisco shunt
Afer_1114	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Afer_1114	PWY-6886	1-butanol autotrophic biosynthesis
Afer_1114	PWY-6901	superpathway of glucose and xylose degradation
Afer_1114	PWY-7003	glycerol degradation to butanol
Afer_1114	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Afer_1114	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Afer_1122	PWY-5269	cardiolipin biosynthesis II
Afer_1122	PWY-5668	cardiolipin biosynthesis I
Afer_1123	PWY-6749	CMP-legionaminate biosynthesis I
Afer_1135	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Afer_1135	PWY-7177	UTP and CTP dephosphorylation II
Afer_1135	PWY-7185	UTP and CTP dephosphorylation I
Afer_1137	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Afer_1137	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Afer_1137	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Afer_1154	PWY-6891	thiazole biosynthesis II (Bacillus)
Afer_1154	PWY-6892	thiazole biosynthesis I (E. coli)
Afer_1155	PWY-6910	hydroxymethylpyrimidine salvage
Afer_1155	PWY-7356	thiamin salvage IV (yeast)
Afer_1155	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Afer_1158	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Afer_1194	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Afer_1200	PWY-5392	reductive TCA cycle II
Afer_1200	PWY-5537	pyruvate fermentation to acetate V
Afer_1200	PWY-5538	pyruvate fermentation to acetate VI
Afer_1200	PWY-5690	TCA cycle II (plants and fungi)
Afer_1200	PWY-5913	TCA cycle VI (obligate autotrophs)
Afer_1200	PWY-6728	methylaspartate cycle
Afer_1200	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Afer_1200	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Afer_1220	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
Afer_1221	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
Afer_1232	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Afer_1232	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Afer_1232	PWY-5989	stearate biosynthesis II (bacteria and plants)
Afer_1232	PWY-6113	superpathway of mycolate biosynthesis
Afer_1232	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Afer_1232	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Afer_1232	PWY-7096	triclosan resistance
Afer_1232	PWYG-321	mycolate biosynthesis
Afer_1239	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Afer_1243	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Afer_1243	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Afer_1244	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Afer_1244	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Afer_1245	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Afer_1245	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Afer_1245	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Afer_1245	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Afer_1247	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Afer_1247	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Afer_1248	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Afer_1248	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Afer_1248	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Afer_1254	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Afer_1254	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Afer_1262	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Afer_1262	PWY-6549	L-glutamine biosynthesis III
Afer_1262	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Afer_1262	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Afer_1286	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Afer_1286	PWY-7118	chitin degradation to ethanol
Afer_1304	PWY-6614	tetrahydrofolate biosynthesis
Afer_1324	PWY-6454	vancomycin resistance I
Afer_1324	PWY-6455	vancomycin resistance II
Afer_1335	PWY-6936	seleno-amino acid biosynthesis
Afer_1335	PWY-7274	D-cycloserine biosynthesis
Afer_1336	PWY-6936	seleno-amino acid biosynthesis
Afer_1346	PWY-4381	fatty acid biosynthesis initiation I
Afer_1346	PWY-5743	3-hydroxypropanoate cycle
Afer_1346	PWY-5744	glyoxylate assimilation
Afer_1346	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Afer_1346	PWY-6679	jadomycin biosynthesis
Afer_1346	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Afer_1349	PWY-7560	methylerythritol phosphate pathway II
Afer_1351	PWY-7205	CMP phosphorylation
Afer_1354	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Afer_1355	PWY-3461	L-tyrosine biosynthesis II
Afer_1355	PWY-3462	L-phenylalanine biosynthesis II
Afer_1355	PWY-6120	L-tyrosine biosynthesis III
Afer_1355	PWY-6627	salinosporamide A biosynthesis
Afer_1361	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Afer_1361	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Afer_1362	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Afer_1362	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Afer_1375	PWY-1361	benzoyl-CoA degradation I (aerobic)
Afer_1375	PWY-4261	glycerol degradation I
Afer_1375	PWY-5109	2-methylbutanoate biosynthesis
Afer_1375	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Afer_1375	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Afer_1375	PWY-5177	glutaryl-CoA degradation
Afer_1375	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Afer_1375	PWY-6118	glycerol-3-phosphate shuttle
Afer_1375	PWY-6435	4-hydroxybenzoate biosynthesis V
Afer_1375	PWY-6583	pyruvate fermentation to butanol I
Afer_1375	PWY-6863	pyruvate fermentation to hexanol
Afer_1375	PWY-6883	pyruvate fermentation to butanol II
Afer_1375	PWY-6944	androstenedione degradation
Afer_1375	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Afer_1375	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Afer_1375	PWY-6952	glycerophosphodiester degradation
Afer_1375	PWY-7007	methyl ketone biosynthesis
Afer_1375	PWY-7046	4-coumarate degradation (anaerobic)
Afer_1375	PWY-7094	fatty acid salvage
Afer_1375	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Afer_1375	PWY-735	jasmonic acid biosynthesis
Afer_1375	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Afer_1378	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
Afer_1378	PWY-6853	ethylene biosynthesis II (microbes)
Afer_1378	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Afer_1414	PWY-5028	L-histidine degradation II
Afer_1414	PWY-5030	L-histidine degradation III
Afer_1458	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Afer_1472	PWY-4261	glycerol degradation I
Afer_1475	PWY-6123	inosine-5'-phosphate biosynthesis I
Afer_1475	PWY-7234	inosine-5'-phosphate biosynthesis III
Afer_1488	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Afer_1498	PWY-6829	tRNA methylation (yeast)
Afer_1498	PWY-7285	methylwyosine biosynthesis
Afer_1498	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Afer_1521	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Afer_1527	PWY-1361	benzoyl-CoA degradation I (aerobic)
Afer_1527	PWY-5109	2-methylbutanoate biosynthesis
Afer_1527	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Afer_1527	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Afer_1527	PWY-5177	glutaryl-CoA degradation
Afer_1527	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Afer_1527	PWY-6435	4-hydroxybenzoate biosynthesis V
Afer_1527	PWY-6583	pyruvate fermentation to butanol I
Afer_1527	PWY-6863	pyruvate fermentation to hexanol
Afer_1527	PWY-6883	pyruvate fermentation to butanol II
Afer_1527	PWY-6944	androstenedione degradation
Afer_1527	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Afer_1527	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Afer_1527	PWY-7007	methyl ketone biosynthesis
Afer_1527	PWY-7046	4-coumarate degradation (anaerobic)
Afer_1527	PWY-7094	fatty acid salvage
Afer_1527	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Afer_1527	PWY-735	jasmonic acid biosynthesis
Afer_1527	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Afer_1528	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Afer_1529	PWY-6871	3-methylbutanol biosynthesis
Afer_1537	PWY-5057	L-valine degradation II
Afer_1537	PWY-5076	L-leucine degradation III
Afer_1537	PWY-5078	L-isoleucine degradation II
Afer_1537	PWY-5101	L-isoleucine biosynthesis II
Afer_1537	PWY-5103	L-isoleucine biosynthesis III
Afer_1537	PWY-5104	L-isoleucine biosynthesis IV
Afer_1537	PWY-5108	L-isoleucine biosynthesis V
Afer_1538	PWY-5101	L-isoleucine biosynthesis II
Afer_1538	PWY-6871	3-methylbutanol biosynthesis
Afer_1545	PWY-5101	L-isoleucine biosynthesis II
Afer_1545	PWY-5103	L-isoleucine biosynthesis III
Afer_1545	PWY-5104	L-isoleucine biosynthesis IV
Afer_1545	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Afer_1546	PWY-5101	L-isoleucine biosynthesis II
Afer_1546	PWY-5103	L-isoleucine biosynthesis III
Afer_1546	PWY-5104	L-isoleucine biosynthesis IV
Afer_1546	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Afer_1546	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Afer_1546	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Afer_1546	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Afer_1547	PWY-5101	L-isoleucine biosynthesis II
Afer_1547	PWY-5103	L-isoleucine biosynthesis III
Afer_1547	PWY-5104	L-isoleucine biosynthesis IV
Afer_1547	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Afer_1547	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Afer_1547	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Afer_1547	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Afer_1548	PWY-5101	L-isoleucine biosynthesis II
Afer_1548	PWY-5103	L-isoleucine biosynthesis III
Afer_1548	PWY-5104	L-isoleucine biosynthesis IV
Afer_1548	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Afer_1550	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Afer_1559	PWY-5381	pyridine nucleotide cycling (plants)
Afer_1589	PWY-1042	glycolysis IV (plant cytosol)
Afer_1589	PWY-1622	formaldehyde assimilation I (serine pathway)
Afer_1589	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Afer_1589	PWY-5484	glycolysis II (from fructose 6-phosphate)
Afer_1589	PWY-5723	Rubisco shunt
Afer_1589	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Afer_1589	PWY-6886	1-butanol autotrophic biosynthesis
Afer_1589	PWY-6901	superpathway of glucose and xylose degradation
Afer_1589	PWY-7003	glycerol degradation to butanol
Afer_1589	PWY-7124	ethylene biosynthesis V (engineered)
Afer_1589	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Afer_1625	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Afer_1625	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Afer_1627	PWY-5839	menaquinol-7 biosynthesis
Afer_1627	PWY-5851	demethylmenaquinol-9 biosynthesis
Afer_1627	PWY-5852	demethylmenaquinol-8 biosynthesis I
Afer_1627	PWY-5853	demethylmenaquinol-6 biosynthesis I
Afer_1627	PWY-5890	menaquinol-10 biosynthesis
Afer_1627	PWY-5891	menaquinol-11 biosynthesis
Afer_1627	PWY-5892	menaquinol-12 biosynthesis
Afer_1627	PWY-5895	menaquinol-13 biosynthesis
Afer_1640	PWY-4321	L-glutamate degradation IV
Afer_1642	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Afer_1644	PWY-6700	queuosine biosynthesis
Afer_1658	PWY-4983	L-citrulline-nitric oxide cycle
Afer_1658	PWY-4984	urea cycle
Afer_1658	PWY-5	canavanine biosynthesis
Afer_1658	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Afer_1658	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Afer_1659	PWY-4983	L-citrulline-nitric oxide cycle
Afer_1659	PWY-4984	urea cycle
Afer_1659	PWY-5	canavanine biosynthesis
Afer_1659	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Afer_1659	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Afer_1661	PWY-5686	UMP biosynthesis
Afer_1663	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Afer_1663	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Afer_1664	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Afer_1665	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Afer_1665	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Afer_1682	PWY-6167	flavin biosynthesis II (archaea)
Afer_1682	PWY-6168	flavin biosynthesis III (fungi)
Afer_1683	PWY-6167	flavin biosynthesis II (archaea)
Afer_1683	PWY-6168	flavin biosynthesis III (fungi)
Afer_1683	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Afer_1684	PWY-6167	flavin biosynthesis II (archaea)
Afer_1684	PWY-6168	flavin biosynthesis III (fungi)
Afer_1684	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Afer_1692	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Afer_1692	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Afer_1697	PWY-5686	UMP biosynthesis
Afer_1699	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Afer_1699	PWY-5686	UMP biosynthesis
Afer_1699	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Afer_1700	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Afer_1700	PWY-5686	UMP biosynthesis
Afer_1700	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Afer_1701	PWY-5686	UMP biosynthesis
Afer_1702	PWY-5686	UMP biosynthesis
Afer_1707	PWY-3781	aerobic respiration I (cytochrome c)
Afer_1707	PWY-4521	arsenite oxidation I (respiratory)
Afer_1707	PWY-6692	Fe(II) oxidation
Afer_1707	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Afer_1716	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Afer_1716	PWY-6416	quinate degradation II
Afer_1716	PWY-6707	gallate biosynthesis
Afer_1717	PWY-6164	3-dehydroquinate biosynthesis I
Afer_1718	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Afer_1728	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Afer_1728	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Afer_1728	PWY-5989	stearate biosynthesis II (bacteria and plants)
Afer_1728	PWY-5994	palmitate biosynthesis I (animals and fungi)
Afer_1728	PWY-6113	superpathway of mycolate biosynthesis
Afer_1728	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Afer_1728	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Afer_1728	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Afer_1728	PWYG-321	mycolate biosynthesis
Afer_1732	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Afer_1740	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Afer_1740	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Afer_1750	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Afer_1752	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Afer_1752	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Afer_1765	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Afer_1766	PWY-3801	sucrose degradation II (sucrose synthase)
Afer_1766	PWY-3861	mannitol degradation II
Afer_1766	PWY-3881	mannitol biosynthesis
Afer_1766	PWY-5054	sorbitol biosynthesis I
Afer_1766	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Afer_1766	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Afer_1766	PWY-5659	GDP-mannose biosynthesis
Afer_1766	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Afer_1766	PWY-621	sucrose degradation III (sucrose invertase)
Afer_1766	PWY-622	starch biosynthesis
Afer_1766	PWY-6531	mannitol cycle
Afer_1766	PWY-6981	chitin biosynthesis
Afer_1766	PWY-7238	sucrose biosynthesis II
Afer_1766	PWY-7347	sucrose biosynthesis III
Afer_1766	PWY-7385	1,3-propanediol biosynthesis (engineered)
Afer_1766	PWY-7456	mannan degradation
Afer_1766	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Afer_1768	PWY-6749	CMP-legionaminate biosynthesis I
Afer_1778	PWY-2622	trehalose biosynthesis IV
Afer_1781	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Afer_1781	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Afer_1784	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Afer_1784	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Afer_1786	PWY-5392	reductive TCA cycle II
Afer_1786	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Afer_1786	PWY-5690	TCA cycle II (plants and fungi)
Afer_1786	PWY-5913	TCA cycle VI (obligate autotrophs)
Afer_1786	PWY-6728	methylaspartate cycle
Afer_1786	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Afer_1786	PWY-7254	TCA cycle VII (acetate-producers)
Afer_1786	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Afer_1791	PWY-5743	3-hydroxypropanoate cycle
Afer_1791	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Afer_1791	PWY-6728	methylaspartate cycle
Afer_1791	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Afer_1792	PWY-5484	glycolysis II (from fructose 6-phosphate)
Afer_1795	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Afer_1797	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Afer_1804	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Afer_1804	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Afer_1804	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Afer_1805	PWY-1622	formaldehyde assimilation I (serine pathway)
Afer_1805	PWY-181	photorespiration
Afer_1805	PWY-2161	folate polyglutamylation
Afer_1805	PWY-2201	folate transformations I
Afer_1805	PWY-3661	glycine betaine degradation I
Afer_1805	PWY-3661-1	glycine betaine degradation II (mammalian)
Afer_1805	PWY-3841	folate transformations II
Afer_1805	PWY-5497	purine nucleobases degradation II (anaerobic)
Afer_1811	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Afer_1814	PWY-2941	L-lysine biosynthesis II
Afer_1814	PWY-2942	L-lysine biosynthesis III
Afer_1814	PWY-5097	L-lysine biosynthesis VI
Afer_1822	PWY-3781	aerobic respiration I (cytochrome c)
Afer_1822	PWY-4521	arsenite oxidation I (respiratory)
Afer_1822	PWY-6692	Fe(II) oxidation
Afer_1822	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Afer_1823	PWY-3781	aerobic respiration I (cytochrome c)
Afer_1823	PWY-4521	arsenite oxidation I (respiratory)
Afer_1823	PWY-6692	Fe(II) oxidation
Afer_1823	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Afer_1830	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Afer_1830	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Afer_1832	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Afer_1832	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Afer_1832	PWY-6269	adenosylcobalamin salvage from cobinamide II
Afer_1853	PWY-6823	molybdenum cofactor biosynthesis
Afer_1859	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Afer_1880	PWY-1622	formaldehyde assimilation I (serine pathway)
Afer_1880	PWY-5392	reductive TCA cycle II
Afer_1880	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Afer_1880	PWY-5690	TCA cycle II (plants and fungi)
Afer_1880	PWY-5913	TCA cycle VI (obligate autotrophs)
Afer_1880	PWY-6728	methylaspartate cycle
Afer_1880	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Afer_1880	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Afer_1880	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Afer_1881	PWY-5913	TCA cycle VI (obligate autotrophs)
Afer_1881	PWY-6549	L-glutamine biosynthesis III
Afer_1881	PWY-6728	methylaspartate cycle
Afer_1881	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Afer_1881	PWY-7124	ethylene biosynthesis V (engineered)
Afer_1881	PWY-7254	TCA cycle VII (acetate-producers)
Afer_1881	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Afer_1884	PWY-6823	molybdenum cofactor biosynthesis
Afer_1900	PWY-7560	methylerythritol phosphate pathway II
Afer_1907	PWY-3961	phosphopantothenate biosynthesis II
Afer_1909	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Afer_1909	PWY-6148	tetrahydromethanopterin biosynthesis
Afer_1909	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Afer_1909	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Afer_1910	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Afer_1910	PWY-6148	tetrahydromethanopterin biosynthesis
Afer_1910	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Afer_1910	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Afer_1911	PWY-6614	tetrahydrofolate biosynthesis
Afer_1912	PWY-5663	tetrahydrobiopterin biosynthesis I
Afer_1912	PWY-5664	tetrahydrobiopterin biosynthesis II
Afer_1912	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Afer_1912	PWY-6703	preQ<sub>0</sub> biosynthesis
Afer_1912	PWY-6983	tetrahydrobiopterin biosynthesis III
Afer_1912	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Afer_1913	PWY-6599	guanine and guanosine salvage II
Afer_1913	PWY-6609	adenine and adenosine salvage III
Afer_1913	PWY-6610	adenine and adenosine salvage IV
Afer_1913	PWY-6620	guanine and guanosine salvage
Afer_1920	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Afer_1920	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Afer_1920	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Afer_1920	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Afer_1920	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Afer_1920	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Afer_1942	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Afer_1942	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Afer_1942	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Afer_1942	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Afer_1943	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Afer_1943	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Afer_1943	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Afer_1944	PWY-5686	UMP biosynthesis
Afer_1952	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Afer_1952	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Afer_1952	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Afer_1953	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Afer_1953	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Afer_1953	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Afer_1954	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Afer_1954	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Afer_1954	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Afer_1955	PWY-6123	inosine-5'-phosphate biosynthesis I
Afer_1955	PWY-6124	inosine-5'-phosphate biosynthesis II
Afer_1955	PWY-7234	inosine-5'-phosphate biosynthesis III
Afer_1956	PWY-6123	inosine-5'-phosphate biosynthesis I
Afer_1956	PWY-6124	inosine-5'-phosphate biosynthesis II
Afer_1956	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Afer_1956	PWY-7234	inosine-5'-phosphate biosynthesis III
Afer_1957	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Afer_1957	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Afer_1957	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Afer_1958	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Afer_1959	PWY-1622	formaldehyde assimilation I (serine pathway)
Afer_1959	PWY-5484	glycolysis II (from fructose 6-phosphate)
Afer_1967	PWY-381	nitrate reduction II (assimilatory)
Afer_1967	PWY-5675	nitrate reduction V (assimilatory)
Afer_1967	PWY-6549	L-glutamine biosynthesis III
Afer_1967	PWY-6963	ammonia assimilation cycle I
Afer_1967	PWY-6964	ammonia assimilation cycle II
Afer_1984	PWY-5913	TCA cycle VI (obligate autotrophs)
Afer_1984	PWY-6549	L-glutamine biosynthesis III
Afer_1984	PWY-6728	methylaspartate cycle
Afer_1984	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Afer_1984	PWY-7124	ethylene biosynthesis V (engineered)
Afer_1984	PWY-7254	TCA cycle VII (acetate-producers)
Afer_1984	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Afer_1994	PWY-5350	thiosulfate disproportionation III (rhodanese)
Afer_2002	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Afer_2002	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
