A1S_0031	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1S_0036	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
A1S_0036	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
A1S_0036	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
A1S_0036	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
A1S_0036	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
A1S_0036	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
A1S_0036	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
A1S_0036	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
A1S_0036	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
A1S_0036	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
A1S_0044	PWY-5316	nicotine biosynthesis
A1S_0044	PWY-5381	pyridine nucleotide cycling (plants)
A1S_0044	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
A1S_0044	PWY-7342	superpathway of nicotine biosynthesis
A1S_0063	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
A1S_0064	PWY-3801	sucrose degradation II (sucrose synthase)
A1S_0064	PWY-5054	sorbitol biosynthesis I
A1S_0064	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
A1S_0064	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
A1S_0064	PWY-5659	GDP-mannose biosynthesis
A1S_0064	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A1S_0064	PWY-621	sucrose degradation III (sucrose invertase)
A1S_0064	PWY-622	starch biosynthesis
A1S_0064	PWY-6531	mannitol cycle
A1S_0064	PWY-6981	chitin biosynthesis
A1S_0064	PWY-7238	sucrose biosynthesis II
A1S_0064	PWY-7347	sucrose biosynthesis III
A1S_0064	PWY-7385	1,3-propanediol biosynthesis (engineered)
A1S_0065	PWY-3821	galactose degradation III
A1S_0065	PWY-6317	galactose degradation I (Leloir pathway)
A1S_0065	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
A1S_0065	PWY-6527	stachyose degradation
A1S_0065	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
A1S_0065	PWY-7344	UDP-D-galactose biosynthesis
A1S_0066	PWY-6749	CMP-legionaminate biosynthesis I
A1S_0070	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1S_0070	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1S_0070	PWY-6454	vancomycin resistance I
A1S_0070	PWY-6901	superpathway of glucose and xylose degradation
A1S_0071	PWY-5913	TCA cycle VI (obligate autotrophs)
A1S_0071	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
A1S_0071	PWY-6638	sulfolactate degradation III
A1S_0071	PWY-6642	(<i>R</i>)-cysteate degradation
A1S_0071	PWY-6643	coenzyme M biosynthesis II
A1S_0071	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
A1S_0071	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
A1S_0071	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
A1S_0073	PWY-5747	2-methylcitrate cycle II
A1S_0096	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
A1S_0109	PWY-6157	autoinducer AI-1 biosynthesis
A1S_0119	PWY-6012	acyl carrier protein metabolism I
A1S_0119	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
A1S_0130	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
A1S_0153	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A1S_0155	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A1S_0177	PWY-6936	seleno-amino acid biosynthesis
A1S_0223	PWY-6167	flavin biosynthesis II (archaea)
A1S_0223	PWY-6168	flavin biosynthesis III (fungi)
A1S_0223	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A1S_0227	PWY-5988	wound-induced proteolysis I
A1S_0227	PWY-6018	seed germination protein turnover
A1S_0230	PWY-1042	glycolysis IV (plant cytosol)
A1S_0230	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
A1S_0230	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1S_0230	PWY-5723	Rubisco shunt
A1S_0230	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A1S_0230	PWY-6886	1-butanol autotrophic biosynthesis
A1S_0230	PWY-6901	superpathway of glucose and xylose degradation
A1S_0230	PWY-7003	glycerol degradation to butanol
A1S_0230	PWY-7124	ethylene biosynthesis V (engineered)
A1S_0230	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
A1S_0245	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1S_0245	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1S_0251	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
A1S_0259	PWY-4983	L-citrulline-nitric oxide cycle
A1S_0259	PWY-4984	urea cycle
A1S_0259	PWY-5	canavanine biosynthesis
A1S_0259	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1S_0259	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A1S_0262	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A1S_0262	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
A1S_0263	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A1S_0263	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
A1S_0273	PWY-181	photorespiration
A1S_0274	PWY-5958	acridone alkaloid biosynthesis
A1S_0274	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
A1S_0274	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
A1S_0305	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
A1S_0305	PWY-6435	4-hydroxybenzoate biosynthesis V
A1S_0305	PWY-6863	pyruvate fermentation to hexanol
A1S_0305	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
A1S_0305	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
A1S_0305	PWY-6948	sitosterol degradation to androstenedione
A1S_0305	PWY-7094	fatty acid salvage
A1S_0305	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
A1S_0305	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
A1S_0305	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
A1S_0305	PWY-7339	10-<i>trans</i>-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
A1S_0305	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
A1S_0305	PWY-735	jasmonic acid biosynthesis
A1S_0312	PWY-5269	cardiolipin biosynthesis II
A1S_0312	PWY-5668	cardiolipin biosynthesis I
A1S_0330	PWY-1042	glycolysis IV (plant cytosol)
A1S_0330	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1S_0330	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A1S_0330	PWY-7003	glycerol degradation to butanol
A1S_0350	PWY-5839	menaquinol-7 biosynthesis
A1S_0350	PWY-5844	menaquinol-9 biosynthesis
A1S_0350	PWY-5849	menaquinol-6 biosynthesis
A1S_0350	PWY-5890	menaquinol-10 biosynthesis
A1S_0350	PWY-5891	menaquinol-11 biosynthesis
A1S_0350	PWY-5892	menaquinol-12 biosynthesis
A1S_0350	PWY-5895	menaquinol-13 biosynthesis
A1S_0380	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1S_0380	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1S_0388	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
A1S_0402	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
A1S_0402	PWY-5143	long-chain fatty acid activation
A1S_0402	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
A1S_0402	PWY-5885	wax esters biosynthesis II
A1S_0402	PWY-5972	stearate biosynthesis I (animals and fungi)
A1S_0402	PWY-5995	linoleate biosynthesis I (plants)
A1S_0402	PWY-6000	&gamma;-linolenate biosynthesis II (animals)
A1S_0402	PWY-6001	linoleate biosynthesis II (animals)
A1S_0402	PWY-6803	phosphatidylcholine acyl editing
A1S_0402	PWY-6873	long chain fatty acid ester synthesis for microdiesel production
A1S_0402	PWY-6920	6-gingerol analog biosynthesis
A1S_0402	PWY-6951	A1S_0402
A1S_0402	PWY-7033	alkane biosynthesis II
A1S_0402	PWY-7035	(<i>Z</i>)-9-tricosene biosynthesis
A1S_0402	PWY-7049	icosapentaenoate biosynthesis II (metazoa)
A1S_0402	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
A1S_0402	PWY-7094	fatty acid salvage
A1S_0402	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
A1S_0420	PWY-7396	butanol and isobutanol biosynthesis (engineered)
A1S_0427	PWY-2941	L-lysine biosynthesis II
A1S_0427	PWY-2942	L-lysine biosynthesis III
A1S_0427	PWY-5097	L-lysine biosynthesis VI
A1S_0427	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1S_0427	PWY-6559	spermidine biosynthesis II
A1S_0427	PWY-6562	norspermidine biosynthesis
A1S_0427	PWY-7153	grixazone biosynthesis
A1S_0427	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A1S_0451	PWY-2201	folate transformations I
A1S_0451	PWY-5497	purine nucleobases degradation II (anaerobic)
A1S_0457	PWY-3841	folate transformations II
A1S_0457	PWY-6614	tetrahydrofolate biosynthesis
A1S_0458	PWY-3841	folate transformations II
A1S_0458	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A1S_0458	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1S_0458	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
A1S_0458	PWY-7199	pyrimidine deoxyribonucleosides salvage
A1S_0458	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A1S_0468	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
A1S_0471	PWY-5344	L-homocysteine biosynthesis
A1S_0472	PWY-6871	3-methylbutanol biosynthesis
A1S_0480	PWY-5392	reductive TCA cycle II
A1S_0480	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
A1S_0480	PWY-5690	TCA cycle II (plants and fungi)
A1S_0480	PWY-5913	TCA cycle VI (obligate autotrophs)
A1S_0480	PWY-6728	methylaspartate cycle
A1S_0480	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1S_0480	PWY-7254	TCA cycle VII (acetate-producers)
A1S_0480	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A1S_0481	PWY-1281	sulfoacetaldehyde degradation I
A1S_0481	PWY-5482	pyruvate fermentation to acetate II
A1S_0481	PWY-5485	pyruvate fermentation to acetate IV
A1S_0481	PWY-5497	purine nucleobases degradation II (anaerobic)
A1S_0481	PWY-6637	sulfolactate degradation II
A1S_0482	PWY-5482	pyruvate fermentation to acetate II
A1S_0482	PWY-5485	pyruvate fermentation to acetate IV
A1S_0482	PWY-5497	purine nucleobases degradation II (anaerobic)
A1S_0483	PWY-5101	L-isoleucine biosynthesis II
A1S_0483	PWY-5103	L-isoleucine biosynthesis III
A1S_0483	PWY-5104	L-isoleucine biosynthesis IV
A1S_0483	PWY-7111	pyruvate fermentation to isobutanol (engineered)
A1S_0484	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
A1S_0484	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
A1S_0484	PWY-7242	D-fructuronate degradation
A1S_0484	PWY-7310	D-glucosaminate degradation
A1S_0486	PWY-5530	sorbitol biosynthesis II
A1S_0486	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
A1S_0498	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A1S_0498	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
A1S_0498	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A1S_0498	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1S_0498	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
A1S_0498	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
A1S_0498	PWY-7205	CMP phosphorylation
A1S_0498	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A1S_0498	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1S_0498	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
A1S_0498	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1S_0498	PWY-7224	purine deoxyribonucleosides salvage
A1S_0498	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
A1S_0498	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
A1S_0502	PWY-7560	methylerythritol phosphate pathway II
A1S_0527	PWY-6012	acyl carrier protein metabolism I
A1S_0527	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
A1S_0534	PWY-5971	palmitate biosynthesis II (bacteria and plants)
A1S_0534	PWY-5973	<i>cis</i>-vaccenate biosynthesis
A1S_0534	PWY-5989	stearate biosynthesis II (bacteria and plants)
A1S_0534	PWY-6113	superpathway of mycolate biosynthesis
A1S_0534	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
A1S_0534	PWY-6519	8-amino-7-oxononanoate biosynthesis I
A1S_0534	PWY-7096	triclosan resistance
A1S_0534	PWYG-321	mycolate biosynthesis
A1S_0543	PWY-5101	L-isoleucine biosynthesis II
A1S_0543	PWY-5103	L-isoleucine biosynthesis III
A1S_0543	PWY-5104	L-isoleucine biosynthesis IV
A1S_0543	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
A1S_0543	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
A1S_0543	PWY-6389	(<i>S</i>)-acetoin biosynthesis
A1S_0543	PWY-7111	pyruvate fermentation to isobutanol (engineered)
A1S_0544	PWY-5101	L-isoleucine biosynthesis II
A1S_0544	PWY-5103	L-isoleucine biosynthesis III
A1S_0544	PWY-5104	L-isoleucine biosynthesis IV
A1S_0544	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
A1S_0544	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
A1S_0544	PWY-6389	(<i>S</i>)-acetoin biosynthesis
A1S_0544	PWY-7111	pyruvate fermentation to isobutanol (engineered)
A1S_0545	PWY-5101	L-isoleucine biosynthesis II
A1S_0545	PWY-5103	L-isoleucine biosynthesis III
A1S_0545	PWY-5104	L-isoleucine biosynthesis IV
A1S_0545	PWY-7111	pyruvate fermentation to isobutanol (engineered)
A1S_0584	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
A1S_0584	PWY-6148	tetrahydromethanopterin biosynthesis
A1S_0584	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
A1S_0584	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
A1S_0585	PWY-6654	phosphopantothenate biosynthesis III
A1S_0586	PWY-6654	phosphopantothenate biosynthesis III
A1S_0608	PWY-4381	fatty acid biosynthesis initiation I
A1S_0608	PWY-5743	3-hydroxypropanoate cycle
A1S_0608	PWY-5744	glyoxylate assimilation
A1S_0608	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A1S_0608	PWY-6679	jadomycin biosynthesis
A1S_0608	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
A1S_0610	PWY-3341	L-proline biosynthesis III
A1S_0610	PWY-4981	L-proline biosynthesis II (from arginine)
A1S_0610	PWY-6344	L-ornithine degradation II (Stickland reaction)
A1S_0675	PWY-6614	tetrahydrofolate biosynthesis
A1S_0685	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1S_0685	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1S_0689	PWY-5958	acridone alkaloid biosynthesis
A1S_0689	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
A1S_0689	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
A1S_0703	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
A1S_0705	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
A1S_0705	PWY-5723	Rubisco shunt
A1S_0712	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1S_0713	PWY-5316	nicotine biosynthesis
A1S_0713	PWY-7342	superpathway of nicotine biosynthesis
A1S_0718	PWY-6609	adenine and adenosine salvage III
A1S_0718	PWY-6611	adenine and adenosine salvage V
A1S_0718	PWY-7179	purine deoxyribonucleosides degradation I
A1S_0718	PWY-7179-1	purine deoxyribonucleosides degradation
A1S_0737	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
A1S_0737	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
A1S_0737	PWY-6936	seleno-amino acid biosynthesis
A1S_0737	PWY-702	L-methionine biosynthesis II
A1S_0746	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A1S_0746	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A1S_0746	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
A1S_0746	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A1S_0746	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1S_0746	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1S_0746	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
A1S_0746	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
A1S_0747	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A1S_0747	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A1S_0747	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
A1S_0747	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A1S_0747	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1S_0747	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1S_0747	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
A1S_0747	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
A1S_0765	PWY-7183	pyrimidine nucleobases salvage I
A1S_0784	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1S_0793	PWY-3961	phosphopantothenate biosynthesis II
A1S_0794	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
A1S_0794	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
A1S_0808	PWY-6519	8-amino-7-oxononanoate biosynthesis I
A1S_0809	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
A1S_0817	PWY-4381	fatty acid biosynthesis initiation I
A1S_0817	PWY-6799	fatty acid biosynthesis (plant mitochondria)
A1S_0817	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
A1S_0823	PWY-6167	flavin biosynthesis II (archaea)
A1S_0823	PWY-6168	flavin biosynthesis III (fungi)
A1S_0825	PWY-5155	&beta;-alanine biosynthesis III
A1S_0834	PWY-7560	methylerythritol phosphate pathway II
A1S_0837	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A1S_0886	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A1S_0886	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A1S_0886	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1S_0886	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
A1S_0887	PWY-6749	CMP-legionaminate biosynthesis I
A1S_0888	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1S_0888	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A1S_0898	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
A1S_0906	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A1S_0906	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
A1S_0910	PWY-4041	&gamma;-glutamyl cycle
A1S_0910	PWY-5826	hypoglycin biosynthesis
A1S_0923	PWY-7254	TCA cycle VII (acetate-producers)
A1S_0927	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
A1S_0927	PWY-7494	choline degradation IV
A1S_0965	PWY-2723	trehalose degradation V
A1S_0965	PWY-6317	galactose degradation I (Leloir pathway)
A1S_0965	PWY-6737	starch degradation V
A1S_0969	PWY-6891	thiazole biosynthesis II (Bacillus)
A1S_0969	PWY-6892	thiazole biosynthesis I (E. coli)
A1S_0969	PWY-7560	methylerythritol phosphate pathway II
A1S_0971	PWY-2201	folate transformations I
A1S_0971	PWY-3841	folate transformations II
A1S_0984	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
A1S_0984	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A1S_0984	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
A1S_0984	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
A1S_1000	PWY-5278	sulfite oxidation III
A1S_1000	PWY-5340	sulfate activation for sulfonation
A1S_1000	PWY-6683	sulfate reduction III (assimilatory)
A1S_1000	PWY-6932	selenate reduction
A1S_1001	PWY-5278	sulfite oxidation III
A1S_1001	PWY-5340	sulfate activation for sulfonation
A1S_1001	PWY-6683	sulfate reduction III (assimilatory)
A1S_1001	PWY-6932	selenate reduction
A1S_1008	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1S_1012	PWY-5704	urea degradation II
A1S_1013	PWY-5704	urea degradation II
A1S_1014	PWY-5704	urea degradation II
A1S_1023	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A1S_1052	PWY-5381	pyridine nucleotide cycling (plants)
A1S_1066	PWY-5686	UMP biosynthesis
A1S_1068	PWY-4983	L-citrulline-nitric oxide cycle
A1S_1068	PWY-4984	urea cycle
A1S_1068	PWY-5	canavanine biosynthesis
A1S_1068	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1S_1068	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A1S_1069	PWY-4983	L-citrulline-nitric oxide cycle
A1S_1069	PWY-4984	urea cycle
A1S_1069	PWY-5	canavanine biosynthesis
A1S_1069	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1S_1069	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A1S_1098	PWY-6497	D-galactarate degradation II
A1S_1100	PWY-6499	D-glucarate degradation II
A1S_1101	PWY-6497	D-galactarate degradation II
A1S_1101	PWY-6499	D-glucarate degradation II
A1S_1104	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
A1S_1137	PWY-6610	adenine and adenosine salvage IV
A1S_1142	PWY-2941	L-lysine biosynthesis II
A1S_1142	PWY-2942	L-lysine biosynthesis III
A1S_1142	PWY-5097	L-lysine biosynthesis VI
A1S_1142	PWY-6559	spermidine biosynthesis II
A1S_1142	PWY-6562	norspermidine biosynthesis
A1S_1142	PWY-7153	grixazone biosynthesis
A1S_1179	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A1S_1190	PWY-5686	UMP biosynthesis
A1S_1208	PWY-4381	fatty acid biosynthesis initiation I
A1S_1219	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
A1S_1229	PWY-3341	L-proline biosynthesis III
A1S_1229	PWY-4981	L-proline biosynthesis II (from arginine)
A1S_1229	PWY-6344	L-ornithine degradation II (Stickland reaction)
A1S_1248	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A1S_1261	PWY-1361	benzoyl-CoA degradation I (aerobic)
A1S_1261	PWY-5109	2-methylbutanoate biosynthesis
A1S_1261	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
A1S_1261	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
A1S_1261	PWY-5177	glutaryl-CoA degradation
A1S_1261	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A1S_1261	PWY-6435	4-hydroxybenzoate biosynthesis V
A1S_1261	PWY-6583	pyruvate fermentation to butanol I
A1S_1261	PWY-6863	pyruvate fermentation to hexanol
A1S_1261	PWY-6883	pyruvate fermentation to butanol II
A1S_1261	PWY-6944	androstenedione degradation
A1S_1261	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
A1S_1261	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
A1S_1261	PWY-7007	methyl ketone biosynthesis
A1S_1261	PWY-7046	4-coumarate degradation (anaerobic)
A1S_1261	PWY-7094	fatty acid salvage
A1S_1261	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
A1S_1261	PWY-735	jasmonic acid biosynthesis
A1S_1261	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
A1S_1283	PWY-5169	cyanurate degradation
A1S_1283	PWY-5703	urea degradation I
A1S_1283	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
A1S_1343	PWY-1361	benzoyl-CoA degradation I (aerobic)
A1S_1343	PWY-5109	2-methylbutanoate biosynthesis
A1S_1343	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
A1S_1343	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
A1S_1343	PWY-5177	glutaryl-CoA degradation
A1S_1343	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A1S_1343	PWY-6435	4-hydroxybenzoate biosynthesis V
A1S_1343	PWY-6583	pyruvate fermentation to butanol I
A1S_1343	PWY-6863	pyruvate fermentation to hexanol
A1S_1343	PWY-6883	pyruvate fermentation to butanol II
A1S_1343	PWY-6944	androstenedione degradation
A1S_1343	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
A1S_1343	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
A1S_1343	PWY-7007	methyl ketone biosynthesis
A1S_1343	PWY-7046	4-coumarate degradation (anaerobic)
A1S_1343	PWY-7094	fatty acid salvage
A1S_1343	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
A1S_1343	PWY-735	jasmonic acid biosynthesis
A1S_1343	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
A1S_1351	PWY-5506	methanol oxidation to formaldehyde IV
A1S_1356	PWY-6215	4-chlorobenzoate degradation
A1S_1357	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
A1S_1364	PWY-6832	2-aminoethylphosphonate degradation II
A1S_1375	PWY-4381	fatty acid biosynthesis initiation I
A1S_1375	PWY-5743	3-hydroxypropanoate cycle
A1S_1375	PWY-5744	glyoxylate assimilation
A1S_1375	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A1S_1375	PWY-6679	jadomycin biosynthesis
A1S_1375	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
A1S_1386	PWY-5506	methanol oxidation to formaldehyde IV
A1S_1407	PWY-6936	seleno-amino acid biosynthesis
A1S_1407	PWY-7274	D-cycloserine biosynthesis
A1S_1421	PWY-5794	malonate degradation I (biotin-independent)
A1S_1421	PWY-6060	malonate degradation II (biotin-dependent)
A1S_1422	PWY-5796	malonate decarboxylase activation
A1S_1424	PWY-4381	fatty acid biosynthesis initiation I
A1S_1424	PWY-5743	3-hydroxypropanoate cycle
A1S_1424	PWY-5744	glyoxylate assimilation
A1S_1424	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A1S_1424	PWY-6060	malonate degradation II (biotin-dependent)
A1S_1424	PWY-6679	jadomycin biosynthesis
A1S_1424	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
A1S_1425	PWY-6060	malonate degradation II (biotin-dependent)
A1S_1426	PWY-5796	malonate decarboxylase activation
A1S_1446	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1S_1446	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1S_1511	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
A1S_1513	PWY-6938	NADH repair
A1S_1519	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
A1S_1519	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
A1S_1520	PWY-6891	thiazole biosynthesis II (Bacillus)
A1S_1520	PWY-6892	thiazole biosynthesis I (E. coli)
A1S_1520	PWY-7560	methylerythritol phosphate pathway II
A1S_1521	PWY-6891	thiazole biosynthesis II (Bacillus)
A1S_1521	PWY-6892	thiazole biosynthesis I (E. coli)
A1S_1521	PWY-7560	methylerythritol phosphate pathway II
A1S_1528	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
A1S_1528	PWY-6853	ethylene biosynthesis II (microbes)
A1S_1528	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
A1S_1543	PWY-1042	glycolysis IV (plant cytosol)
A1S_1543	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1S_1543	PWY-6886	1-butanol autotrophic biosynthesis
A1S_1543	PWY-6901	superpathway of glucose and xylose degradation
A1S_1543	PWY-7003	glycerol degradation to butanol
A1S_1544	PWY-1042	glycolysis IV (plant cytosol)
A1S_1544	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
A1S_1544	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1S_1544	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A1S_1544	PWY-7385	1,3-propanediol biosynthesis (engineered)
A1S_1557	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
A1S_1557	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
A1S_1571	PWY-7205	CMP phosphorylation
A1S_1575	PWY-5686	UMP biosynthesis
A1S_1601	PWY-6728	methylaspartate cycle
A1S_1601	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1S_1601	PWY-7118	chitin degradation to ethanol
A1S_1601	PWY-7294	xylose degradation IV
A1S_1601	PWY-7295	L-arabinose degradation IV
A1S_1659	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
A1S_1659	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
A1S_1659	PWY-6269	adenosylcobalamin salvage from cobinamide II
A1S_1660	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
A1S_1660	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
A1S_1660	PWY-6269	adenosylcobalamin salvage from cobinamide II
A1S_1663	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
A1S_1663	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
A1S_1663	PWY-6269	adenosylcobalamin salvage from cobinamide II
A1S_1664	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
A1S_1664	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
A1S_1664	PWY-6164	3-dehydroquinate biosynthesis I
A1S_1694	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
A1S_1698	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
A1S_1698	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
A1S_1698	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
A1S_1704	PWY-6389	(<i>S</i>)-acetoin biosynthesis
A1S_1726	PWY-5392	reductive TCA cycle II
A1S_1726	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
A1S_1726	PWY-5690	TCA cycle II (plants and fungi)
A1S_1726	PWY-5913	TCA cycle VI (obligate autotrophs)
A1S_1726	PWY-6728	methylaspartate cycle
A1S_1726	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1S_1726	PWY-7254	TCA cycle VII (acetate-producers)
A1S_1726	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A1S_1767	PWY-5381	pyridine nucleotide cycling (plants)
A1S_1767	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
A1S_1767	PWY-6348	phosphate acquisition
A1S_1767	PWY-6357	phosphate utilization in cell wall regeneration
A1S_1767	PWY-6596	adenosine nucleotides degradation I
A1S_1767	PWY-6606	guanosine nucleotides degradation II
A1S_1767	PWY-6607	guanosine nucleotides degradation I
A1S_1767	PWY-6608	guanosine nucleotides degradation III
A1S_1767	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
A1S_1767	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
A1S_1767	PWY-7185	UTP and CTP dephosphorylation I
A1S_1774	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
A1S_1777	PWY-2201	folate transformations I
A1S_1777	PWY-3841	folate transformations II
A1S_1780	PWY-5381	pyridine nucleotide cycling (plants)
A1S_1795	PWY-5101	L-isoleucine biosynthesis II
A1S_1795	PWY-5103	L-isoleucine biosynthesis III
A1S_1795	PWY-5104	L-isoleucine biosynthesis IV
A1S_1795	PWY-7111	pyruvate fermentation to isobutanol (engineered)
A1S_1834	PWY-5451	acetone degradation I (to methylglyoxal)
A1S_1834	PWY-6588	pyruvate fermentation to acetone
A1S_1834	PWY-6876	isopropanol biosynthesis
A1S_1834	PWY-7466	acetone degradation III (to propane-1,2-diol)
A1S_1839	PWY-5101	L-isoleucine biosynthesis II
A1S_1839	PWY-5103	L-isoleucine biosynthesis III
A1S_1839	PWY-5104	L-isoleucine biosynthesis IV
A1S_1839	PWY-7111	pyruvate fermentation to isobutanol (engineered)
A1S_1844	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
A1S_1850	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
A1S_1854	PWY-5751	phenylethanol biosynthesis
A1S_1865	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
A1S_1883	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
A1S_1883	PWY-6416	quinate degradation II
A1S_1883	PWY-6707	gallate biosynthesis
A1S_1890	PWY-6123	inosine-5'-phosphate biosynthesis I
A1S_1890	PWY-6124	inosine-5'-phosphate biosynthesis II
A1S_1890	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A1S_1890	PWY-7234	inosine-5'-phosphate biosynthesis III
A1S_1895	PWY-7560	methylerythritol phosphate pathway II
A1S_1898	PWY-1042	glycolysis IV (plant cytosol)
A1S_1898	PWY-1622	formaldehyde assimilation I (serine pathway)
A1S_1898	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
A1S_1898	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1S_1898	PWY-5723	Rubisco shunt
A1S_1898	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A1S_1898	PWY-6886	1-butanol autotrophic biosynthesis
A1S_1898	PWY-6901	superpathway of glucose and xylose degradation
A1S_1898	PWY-7003	glycerol degradation to butanol
A1S_1898	PWY-7124	ethylene biosynthesis V (engineered)
A1S_1898	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
A1S_1899	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
A1S_1899	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
A1S_1900	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
A1S_1900	PWY-7177	UTP and CTP dephosphorylation II
A1S_1900	PWY-7185	UTP and CTP dephosphorylation I
A1S_1908	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
A1S_1908	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
A1S_1908	PWY-6164	3-dehydroquinate biosynthesis I
A1S_1913	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1S_1913	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A1S_1915	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
A1S_1915	PWY-5723	Rubisco shunt
A1S_1919	PWY-6803	phosphatidylcholine acyl editing
A1S_1919	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
A1S_1919	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
A1S_1919	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
A1S_1947	PWY-7310	D-glucosaminate degradation
A1S_1951	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
A1S_1957	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
A1S_1957	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
A1S_1966	PWY-5971	palmitate biosynthesis II (bacteria and plants)
A1S_1966	PWY-5973	<i>cis</i>-vaccenate biosynthesis
A1S_1966	PWY-5989	stearate biosynthesis II (bacteria and plants)
A1S_1966	PWY-5994	palmitate biosynthesis I (animals and fungi)
A1S_1966	PWY-6113	superpathway of mycolate biosynthesis
A1S_1966	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
A1S_1966	PWY-6519	8-amino-7-oxononanoate biosynthesis I
A1S_1966	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
A1S_1966	PWYG-321	mycolate biosynthesis
A1S_1971	PWY-7560	methylerythritol phosphate pathway II
A1S_1980	PWY-4981	L-proline biosynthesis II (from arginine)
A1S_1980	PWY-4984	urea cycle
A1S_1980	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A1S_1982	PWY-7560	methylerythritol phosphate pathway II
A1S_1986	PWY-5392	reductive TCA cycle II
A1S_1986	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
A1S_1986	PWY-5690	TCA cycle II (plants and fungi)
A1S_1986	PWY-5913	TCA cycle VI (obligate autotrophs)
A1S_1986	PWY-6728	methylaspartate cycle
A1S_1986	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1S_1986	PWY-7254	TCA cycle VII (acetate-producers)
A1S_1986	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A1S_1987	PWY-3821	galactose degradation III
A1S_1987	PWY-6317	galactose degradation I (Leloir pathway)
A1S_1987	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
A1S_1987	PWY-6527	stachyose degradation
A1S_1987	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
A1S_1987	PWY-7344	UDP-D-galactose biosynthesis
A1S_1995	PWY-6823	molybdenum cofactor biosynthesis
A1S_1997	PWY-6823	molybdenum cofactor biosynthesis
A1S_1999	PWY-6823	molybdenum cofactor biosynthesis
A1S_2005	PWY-6683	sulfate reduction III (assimilatory)
A1S_2009	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
A1S_2009	PWY-6416	quinate degradation II
A1S_2009	PWY-6707	gallate biosynthesis
A1S_2050	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1S_2050	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1S_2065	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
A1S_2065	PWY-5723	Rubisco shunt
A1S_2084	PWY-3461	L-tyrosine biosynthesis II
A1S_2084	PWY-3462	L-phenylalanine biosynthesis II
A1S_2084	PWY-6120	L-tyrosine biosynthesis III
A1S_2084	PWY-6627	salinosporamide A biosynthesis
A1S_2095	PWY-6897	thiamin salvage II
A1S_2095	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
A1S_2095	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
A1S_2108	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A1S_2113	PWY-2781	<i>cis</i>-zeatin biosynthesis
A1S_2128	PWY-5747	2-methylcitrate cycle II
A1S_2136	PWY-381	nitrate reduction II (assimilatory)
A1S_2136	PWY-5675	nitrate reduction V (assimilatory)
A1S_2136	PWY-6549	L-glutamine biosynthesis III
A1S_2136	PWY-6963	ammonia assimilation cycle I
A1S_2136	PWY-6964	ammonia assimilation cycle II
A1S_2143	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
A1S_2143	PWY-6148	tetrahydromethanopterin biosynthesis
A1S_2143	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
A1S_2143	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
A1S_2144	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
A1S_2144	PWY-6148	tetrahydromethanopterin biosynthesis
A1S_2144	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
A1S_2144	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
A1S_2164	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1S_2167	PWY-3781	aerobic respiration I (cytochrome c)
A1S_2167	PWY-4521	arsenite oxidation I (respiratory)
A1S_2167	PWY-6692	Fe(II) oxidation
A1S_2167	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
A1S_2167	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
A1S_2176	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
A1S_2187	PWY-6123	inosine-5'-phosphate biosynthesis I
A1S_2187	PWY-6124	inosine-5'-phosphate biosynthesis II
A1S_2187	PWY-7234	inosine-5'-phosphate biosynthesis III
A1S_2188	PWY-6123	inosine-5'-phosphate biosynthesis I
A1S_2188	PWY-6124	inosine-5'-phosphate biosynthesis II
A1S_2188	PWY-7234	inosine-5'-phosphate biosynthesis III
A1S_2189	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A1S_2189	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A1S_2189	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A1S_2194	PWY-5386	methylglyoxal degradation I
A1S_2202	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1S_2202	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1S_2232	PWY-5642	2,4-dinitrotoluene degradation
A1S_2232	PWY-6373	acrylate degradation
A1S_2251	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A1S_2251	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A1S_2251	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A1S_2251	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
A1S_2253	PWY-5686	UMP biosynthesis
A1S_2257	PWY-5667	CDP-diacylglycerol biosynthesis I
A1S_2257	PWY-5981	CDP-diacylglycerol biosynthesis III
A1S_2265	PWY-6891	thiazole biosynthesis II (Bacillus)
A1S_2265	PWY-6892	thiazole biosynthesis I (E. coli)
A1S_2276	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
A1S_2277	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
A1S_2283	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
A1S_2283	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
A1S_2283	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
A1S_2284	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1S_2284	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
A1S_2284	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A1S_2284	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1S_2286	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
A1S_2286	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
A1S_2286	PWY-6897	thiamin salvage II
A1S_2286	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
A1S_2286	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
A1S_2286	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
A1S_2286	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
A1S_2307	PWY-1622	formaldehyde assimilation I (serine pathway)
A1S_2307	PWY-181	photorespiration
A1S_2307	PWY-2161	folate polyglutamylation
A1S_2307	PWY-2201	folate transformations I
A1S_2307	PWY-3661	glycine betaine degradation I
A1S_2307	PWY-3661-1	glycine betaine degradation II (mammalian)
A1S_2307	PWY-3841	folate transformations II
A1S_2307	PWY-5497	purine nucleobases degradation II (anaerobic)
A1S_2308	PWY-6857	retinol biosynthesis
A1S_2313	PWY-6700	queuosine biosynthesis
A1S_2329	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
A1S_2329	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
A1S_2329	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
A1S_2334	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
A1S_2335	PWY-2201	folate transformations I
A1S_2335	PWY-3841	folate transformations II
A1S_2338	PWY-1281	sulfoacetaldehyde degradation I
A1S_2338	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
A1S_2338	PWY-5482	pyruvate fermentation to acetate II
A1S_2338	PWY-5485	pyruvate fermentation to acetate IV
A1S_2338	PWY-5497	purine nucleobases degradation II (anaerobic)
A1S_2338	PWY-6637	sulfolactate degradation II
A1S_2338	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
A1S_2342	PWY-5663	tetrahydrobiopterin biosynthesis I
A1S_2342	PWY-5664	tetrahydrobiopterin biosynthesis II
A1S_2342	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
A1S_2342	PWY-6703	preQ<sub>0</sub> biosynthesis
A1S_2342	PWY-6983	tetrahydrobiopterin biosynthesis III
A1S_2342	PWY-7442	drosopterin and aurodrosopterin biosynthesis
A1S_2343	PWY-6854	ethylene biosynthesis III (microbes)
A1S_2350	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
A1S_2350	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
A1S_2350	PWY-6148	tetrahydromethanopterin biosynthesis
A1S_2351	PWY-381	nitrate reduction II (assimilatory)
A1S_2351	PWY-5675	nitrate reduction V (assimilatory)
A1S_2351	PWY-6549	L-glutamine biosynthesis III
A1S_2351	PWY-6963	ammonia assimilation cycle I
A1S_2351	PWY-6964	ammonia assimilation cycle II
A1S_2352	PWY-381	nitrate reduction II (assimilatory)
A1S_2352	PWY-5675	nitrate reduction V (assimilatory)
A1S_2352	PWY-6549	L-glutamine biosynthesis III
A1S_2352	PWY-6963	ammonia assimilation cycle I
A1S_2352	PWY-6964	ammonia assimilation cycle II
A1S_2355	PWY-5958	acridone alkaloid biosynthesis
A1S_2355	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
A1S_2355	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
A1S_2364	PWY-5497	purine nucleobases degradation II (anaerobic)
A1S_2364	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
A1S_2364	PWY-6538	caffeine degradation III (bacteria, via demethylation)
A1S_2364	PWY-6596	adenosine nucleotides degradation I
A1S_2364	PWY-6606	guanosine nucleotides degradation II
A1S_2364	PWY-6607	guanosine nucleotides degradation I
A1S_2364	PWY-6608	guanosine nucleotides degradation III
A1S_2364	PWY-6999	theophylline degradation
A1S_2365	PWY-5497	purine nucleobases degradation II (anaerobic)
A1S_2365	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
A1S_2365	PWY-6538	caffeine degradation III (bacteria, via demethylation)
A1S_2365	PWY-6596	adenosine nucleotides degradation I
A1S_2365	PWY-6606	guanosine nucleotides degradation II
A1S_2365	PWY-6607	guanosine nucleotides degradation I
A1S_2365	PWY-6608	guanosine nucleotides degradation III
A1S_2365	PWY-6999	theophylline degradation
A1S_2366	PWY-5663	tetrahydrobiopterin biosynthesis I
A1S_2366	PWY-5664	tetrahydrobiopterin biosynthesis II
A1S_2366	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
A1S_2366	PWY-6703	preQ<sub>0</sub> biosynthesis
A1S_2366	PWY-6983	tetrahydrobiopterin biosynthesis III
A1S_2366	PWY-7442	drosopterin and aurodrosopterin biosynthesis
A1S_2370	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
A1S_2370	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
A1S_2372	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
A1S_2372	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
A1S_2372	PWY-5901	2,3-dihydroxybenzoate biosynthesis
A1S_2372	PWY-6406	salicylate biosynthesis I
A1S_2373	PWY-6012	acyl carrier protein metabolism I
A1S_2373	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
A1S_2380	PWY-5901	2,3-dihydroxybenzoate biosynthesis
A1S_2397	PWY-6823	molybdenum cofactor biosynthesis
A1S_2426	PWY-5386	methylglyoxal degradation I
A1S_2433	PWY-5381	pyridine nucleotide cycling (plants)
A1S_2433	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
A1S_2433	PWY-6596	adenosine nucleotides degradation I
A1S_2433	PWY-6606	guanosine nucleotides degradation II
A1S_2433	PWY-6607	guanosine nucleotides degradation I
A1S_2433	PWY-6608	guanosine nucleotides degradation III
A1S_2433	PWY-7185	UTP and CTP dephosphorylation I
A1S_2435	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1S_2435	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1S_2441	PWY-6123	inosine-5'-phosphate biosynthesis I
A1S_2441	PWY-6124	inosine-5'-phosphate biosynthesis II
A1S_2441	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A1S_2441	PWY-7234	inosine-5'-phosphate biosynthesis III
A1S_2454	PWY-6409	pyoverdine I biosynthesis
A1S_2454	PWY-6562	norspermidine biosynthesis
A1S_2454	PWY-761	rhizobactin 1021 biosynthesis
A1S_2464	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A1S_2465	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
A1S_2465	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
A1S_2465	PWY-6897	thiamin salvage II
A1S_2465	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
A1S_2465	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
A1S_2465	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
A1S_2465	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
A1S_2475	PWY-5913	TCA cycle VI (obligate autotrophs)
A1S_2475	PWY-6549	L-glutamine biosynthesis III
A1S_2475	PWY-6728	methylaspartate cycle
A1S_2475	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1S_2475	PWY-7124	ethylene biosynthesis V (engineered)
A1S_2475	PWY-7254	TCA cycle VII (acetate-producers)
A1S_2475	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
A1S_2477	PWY-5913	TCA cycle VI (obligate autotrophs)
A1S_2477	PWY-6549	L-glutamine biosynthesis III
A1S_2477	PWY-6728	methylaspartate cycle
A1S_2477	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1S_2477	PWY-7124	ethylene biosynthesis V (engineered)
A1S_2477	PWY-7254	TCA cycle VII (acetate-producers)
A1S_2477	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
A1S_2489	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
A1S_2493	PWY-723	alkylnitronates degradation
A1S_2501	PWY-1042	glycolysis IV (plant cytosol)
A1S_2501	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1S_2501	PWY-6901	superpathway of glucose and xylose degradation
A1S_2501	PWY-7003	glycerol degradation to butanol
A1S_2526	PWY-5316	nicotine biosynthesis
A1S_2526	PWY-7342	superpathway of nicotine biosynthesis
A1S_2528	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A1S_2528	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A1S_2528	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1S_2528	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
A1S_2528	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
A1S_2528	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A1S_2542	PWY-6703	preQ<sub>0</sub> biosynthesis
A1S_2544	PWY-6482	diphthamide biosynthesis (archaea)
A1S_2544	PWY-7546	diphthamide biosynthesis (eukaryotes)
A1S_2549	PWY-5663	tetrahydrobiopterin biosynthesis I
A1S_2549	PWY-5664	tetrahydrobiopterin biosynthesis II
A1S_2549	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
A1S_2549	PWY-6703	preQ<sub>0</sub> biosynthesis
A1S_2549	PWY-6983	tetrahydrobiopterin biosynthesis III
A1S_2549	PWY-7442	drosopterin and aurodrosopterin biosynthesis
A1S_2568	PWY-6012	acyl carrier protein metabolism I
A1S_2568	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
A1S_2579	PWY-5901	2,3-dihydroxybenzoate biosynthesis
A1S_2580	PWY-5901	2,3-dihydroxybenzoate biosynthesis
A1S_2581	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
A1S_2581	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
A1S_2581	PWY-5901	2,3-dihydroxybenzoate biosynthesis
A1S_2581	PWY-6406	salicylate biosynthesis I
A1S_2585	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A1S_2585	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A1S_2585	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A1S_2596	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1S_2605	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A1S_2605	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A1S_2605	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A1S_2631	PWY-2941	L-lysine biosynthesis II
A1S_2631	PWY-5097	L-lysine biosynthesis VI
A1S_2632	PWY-2941	L-lysine biosynthesis II
A1S_2632	PWY-2942	L-lysine biosynthesis III
A1S_2632	PWY-5097	L-lysine biosynthesis VI
A1S_2663	PWY-7039	phosphatidate metabolism, as a signaling molecule
A1S_2667	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
A1S_2667	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
A1S_2667	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
A1S_2668	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
A1S_2669	PWY-4261	glycerol degradation I
A1S_2669	PWY-6118	glycerol-3-phosphate shuttle
A1S_2669	PWY-6952	glycerophosphodiester degradation
A1S_2670	PWY-4261	glycerol degradation I
A1S_2674	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
A1S_2674	PWY-2201	folate transformations I
A1S_2674	PWY-3841	folate transformations II
A1S_2674	PWY-5030	L-histidine degradation III
A1S_2674	PWY-5497	purine nucleobases degradation II (anaerobic)
A1S_2674	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
A1S_2680	PWY-6614	tetrahydrofolate biosynthesis
A1S_2686	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1S_2686	PWY-5686	UMP biosynthesis
A1S_2686	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A1S_2687	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1S_2687	PWY-5686	UMP biosynthesis
A1S_2687	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A1S_2697	PWY-5194	siroheme biosynthesis
A1S_2697	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
A1S_2704	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
A1S_2704	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
A1S_2713	PWY-3781	aerobic respiration I (cytochrome c)
A1S_2713	PWY-4302	aerobic respiration III (alternative oxidase pathway)
A1S_2713	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
A1S_2713	PWY-5690	TCA cycle II (plants and fungi)
A1S_2713	PWY-6728	methylaspartate cycle
A1S_2713	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1S_2713	PWY-7254	TCA cycle VII (acetate-producers)
A1S_2713	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
A1S_2714	PWY-3781	aerobic respiration I (cytochrome c)
A1S_2714	PWY-4302	aerobic respiration III (alternative oxidase pathway)
A1S_2714	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
A1S_2714	PWY-5690	TCA cycle II (plants and fungi)
A1S_2714	PWY-6728	methylaspartate cycle
A1S_2714	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1S_2714	PWY-7254	TCA cycle VII (acetate-producers)
A1S_2714	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
A1S_2715	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
A1S_2716	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
A1S_2718	PWY-5392	reductive TCA cycle II
A1S_2718	PWY-5537	pyruvate fermentation to acetate V
A1S_2718	PWY-5538	pyruvate fermentation to acetate VI
A1S_2718	PWY-5690	TCA cycle II (plants and fungi)
A1S_2718	PWY-5913	TCA cycle VI (obligate autotrophs)
A1S_2718	PWY-6728	methylaspartate cycle
A1S_2718	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1S_2718	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A1S_2719	PWY-5392	reductive TCA cycle II
A1S_2719	PWY-5537	pyruvate fermentation to acetate V
A1S_2719	PWY-5538	pyruvate fermentation to acetate VI
A1S_2719	PWY-5690	TCA cycle II (plants and fungi)
A1S_2719	PWY-5913	TCA cycle VI (obligate autotrophs)
A1S_2719	PWY-6728	methylaspartate cycle
A1S_2719	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1S_2719	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A1S_2725	PWY-5194	siroheme biosynthesis
A1S_2725	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
A1S_2726	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
A1S_2727	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
A1S_2783	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
A1S_2846	PWY-6683	sulfate reduction III (assimilatory)
A1S_2854	PWY-1361	benzoyl-CoA degradation I (aerobic)
A1S_2854	PWY-5109	2-methylbutanoate biosynthesis
A1S_2854	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
A1S_2854	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
A1S_2854	PWY-5177	glutaryl-CoA degradation
A1S_2854	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A1S_2854	PWY-6435	4-hydroxybenzoate biosynthesis V
A1S_2854	PWY-6583	pyruvate fermentation to butanol I
A1S_2854	PWY-6863	pyruvate fermentation to hexanol
A1S_2854	PWY-6883	pyruvate fermentation to butanol II
A1S_2854	PWY-6944	androstenedione degradation
A1S_2854	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
A1S_2854	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
A1S_2854	PWY-7007	methyl ketone biosynthesis
A1S_2854	PWY-7046	4-coumarate degradation (anaerobic)
A1S_2854	PWY-7094	fatty acid salvage
A1S_2854	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
A1S_2854	PWY-735	jasmonic acid biosynthesis
A1S_2854	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
A1S_2868	PWY-2161	folate polyglutamylation
A1S_2869	PWY-4381	fatty acid biosynthesis initiation I
A1S_2869	PWY-5743	3-hydroxypropanoate cycle
A1S_2869	PWY-5744	glyoxylate assimilation
A1S_2869	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A1S_2869	PWY-6679	jadomycin biosynthesis
A1S_2869	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
A1S_2878	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
A1S_2878	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
A1S_2878	PWY-6268	adenosylcobalamin salvage from cobalamin
A1S_2878	PWY-6269	adenosylcobalamin salvage from cobinamide II
A1S_2897	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
A1S_2904	PWY-5057	L-valine degradation II
A1S_2904	PWY-5076	L-leucine degradation III
A1S_2904	PWY-5078	L-isoleucine degradation II
A1S_2904	PWY-5101	L-isoleucine biosynthesis II
A1S_2904	PWY-5103	L-isoleucine biosynthesis III
A1S_2904	PWY-5104	L-isoleucine biosynthesis IV
A1S_2904	PWY-5108	L-isoleucine biosynthesis V
A1S_2910	PWY-6700	queuosine biosynthesis
A1S_2912	PWY-6700	queuosine biosynthesis
A1S_2964	PWY-6123	inosine-5'-phosphate biosynthesis I
A1S_2964	PWY-7234	inosine-5'-phosphate biosynthesis III
A1S_2972	PWY-5497	purine nucleobases degradation II (anaerobic)
A1S_2972	PWY-6606	guanosine nucleotides degradation II
A1S_2972	PWY-6608	guanosine nucleotides degradation III
A1S_2972	PWY-7442	drosopterin and aurodrosopterin biosynthesis
A1S_2973	PWY-5497	purine nucleobases degradation II (anaerobic)
A1S_2973	PWY-6606	guanosine nucleotides degradation II
A1S_2973	PWY-6608	guanosine nucleotides degradation III
A1S_2973	PWY-7442	drosopterin and aurodrosopterin biosynthesis
A1S_2974	PWY-6599	guanine and guanosine salvage II
A1S_2974	PWY-6609	adenine and adenosine salvage III
A1S_2974	PWY-6610	adenine and adenosine salvage IV
A1S_2974	PWY-6620	guanine and guanosine salvage
A1S_3008	PWY-4381	fatty acid biosynthesis initiation I
A1S_3008	PWY-5743	3-hydroxypropanoate cycle
A1S_3008	PWY-5744	glyoxylate assimilation
A1S_3008	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A1S_3008	PWY-6679	jadomycin biosynthesis
A1S_3008	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
A1S_3014	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
A1S_3017	PWY-5669	phosphatidylethanolamine biosynthesis I
A1S_3025	PWY-1622	formaldehyde assimilation I (serine pathway)
A1S_3025	PWY-5392	reductive TCA cycle II
A1S_3025	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
A1S_3025	PWY-5690	TCA cycle II (plants and fungi)
A1S_3025	PWY-5913	TCA cycle VI (obligate autotrophs)
A1S_3025	PWY-6728	methylaspartate cycle
A1S_3025	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1S_3025	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
A1S_3025	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
A1S_3091	PWY-5667	CDP-diacylglycerol biosynthesis I
A1S_3091	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
A1S_3106	PWY-6891	thiazole biosynthesis II (Bacillus)
A1S_3106	PWY-6892	thiazole biosynthesis I (E. coli)
A1S_3106	PWY-7560	methylerythritol phosphate pathway II
A1S_3107	PWY-6168	flavin biosynthesis III (fungi)
A1S_3107	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
A1S_3108	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
A1S_3108	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
A1S_3109	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
A1S_3143	PWY-6854	ethylene biosynthesis III (microbes)
A1S_3151	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1S_3151	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1S_3162	PWY-6829	tRNA methylation (yeast)
A1S_3162	PWY-7285	methylwyosine biosynthesis
A1S_3162	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
A1S_3169	PWY-7560	methylerythritol phosphate pathway II
A1S_3170	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
A1S_3187	PWY-6164	3-dehydroquinate biosynthesis I
A1S_3190	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
A1S_3200	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1S_3200	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A1S_3200	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1S_3201	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1S_3201	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A1S_3201	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1S_3202	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1S_3202	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1S_3210	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A1S_3222	PWY-5344	L-homocysteine biosynthesis
A1S_3222	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
A1S_3225	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
A1S_3225	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A1S_3225	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
A1S_3225	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
A1S_3244	PWY-702	L-methionine biosynthesis II
A1S_3274	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
A1S_3309	PWY-6672	<i>cis</i>-genanyl-CoA degradation
A1S_3309	PWY-7118	chitin degradation to ethanol
A1S_3319	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
A1S_3319	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
A1S_3320	PWY-6749	CMP-legionaminate biosynthesis I
A1S_3321	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
A1S_3321	PWY-6596	adenosine nucleotides degradation I
A1S_3321	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
A1S_3328	PWY-6891	thiazole biosynthesis II (Bacillus)
A1S_3328	PWY-6892	thiazole biosynthesis I (E. coli)
A1S_3328	PWY-7560	methylerythritol phosphate pathway II
A1S_3334	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1S_3334	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1S_3335	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1S_3335	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1S_3336	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1S_3336	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
A1S_3336	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A1S_3336	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1S_3340	PWY-5686	UMP biosynthesis
A1S_3352	PWY-5691	urate degradation to allantoin I
A1S_3352	PWY-7394	urate degradation to allantoin II
A1S_3353	PWY-5691	urate degradation to allantoin I
A1S_3353	PWY-7394	urate degradation to allantoin II
A1S_3357	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
A1S_3358	PWY-5694	allantoin degradation to glyoxylate I
A1S_3358	PWY-5705	allantoin degradation to glyoxylate III
A1S_3366	PWY-6840	homoglutathione biosynthesis
A1S_3366	PWY-7255	ergothioneine biosynthesis I (bacteria)
A1S_3377	PWY-6857	retinol biosynthesis
A1S_3378	PWY-5669	phosphatidylethanolamine biosynthesis I
A1S_3379	PWY-5350	thiosulfate disproportionation III (rhodanese)
A1S_3380	PWY-5381	pyridine nucleotide cycling (plants)
A1S_3382	PWY-5506	methanol oxidation to formaldehyde IV
A1S_3388	PWY-6167	flavin biosynthesis II (archaea)
A1S_3388	PWY-6168	flavin biosynthesis III (fungi)
A1S_3388	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
A1S_3389	PWY-6167	flavin biosynthesis II (archaea)
A1S_3389	PWY-6168	flavin biosynthesis III (fungi)
A1S_3391	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
A1S_3391	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
A1S_3391	PWY-6896	thiamin salvage I
A1S_3391	PWY-6897	thiamin salvage II
A1S_3392	PWY-5269	cardiolipin biosynthesis II
A1S_3392	PWY-5668	cardiolipin biosynthesis I
A1S_3395	PWY-6749	CMP-legionaminate biosynthesis I
A1S_3396	PWY-6749	CMP-legionaminate biosynthesis I
A1S_3398	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1S_3398	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1S_3403	PWY-5028	L-histidine degradation II
A1S_3403	PWY-5030	L-histidine degradation III
A1S_3405	PWY-5028	L-histidine degradation II
A1S_3405	PWY-5030	L-histidine degradation III
A1S_3406	PWY-5028	L-histidine degradation II
A1S_3406	PWY-5030	L-histidine degradation III
A1S_3407	PWY-5028	L-histidine degradation II
A1S_3407	PWY-5030	L-histidine degradation III
A1S_3412	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A1S_3423	PWY-2941	L-lysine biosynthesis II
A1S_3423	PWY-2942	L-lysine biosynthesis III
A1S_3423	PWY-5097	L-lysine biosynthesis VI
A1S_3425	PWY-6123	inosine-5'-phosphate biosynthesis I
A1S_3425	PWY-6124	inosine-5'-phosphate biosynthesis II
A1S_3425	PWY-7234	inosine-5'-phosphate biosynthesis III
A1S_3442	PWY-2941	L-lysine biosynthesis II
A1S_3442	PWY-2942	L-lysine biosynthesis III
A1S_3442	PWY-5097	L-lysine biosynthesis VI
A1S_3449	PWY-1622	formaldehyde assimilation I (serine pathway)
A1S_3449	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
A1S_3449	PWY-5913	TCA cycle VI (obligate autotrophs)
A1S_3449	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A1S_3449	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
A1S_3449	PWY-6549	L-glutamine biosynthesis III
A1S_3449	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
A1S_3449	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
A1S_3449	PWY-7124	ethylene biosynthesis V (engineered)
A1S_3455	PWY-5101	L-isoleucine biosynthesis II
A1S_3455	PWY-5103	L-isoleucine biosynthesis III
A1S_3455	PWY-5104	L-isoleucine biosynthesis IV
A1S_3455	PWY-7111	pyruvate fermentation to isobutanol (engineered)
