APL_0004	PWY-6854	ethylene biosynthesis III (microbes)
APL_0005	PWY-2941	L-lysine biosynthesis II
APL_0005	PWY-2942	L-lysine biosynthesis III
APL_0005	PWY-5097	L-lysine biosynthesis VI
APL_0005	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APL_0005	PWY-6559	spermidine biosynthesis II
APL_0005	PWY-6562	norspermidine biosynthesis
APL_0005	PWY-7153	grixazone biosynthesis
APL_0005	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APL_0014	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APL_0014	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APL_0015	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APL_0015	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APL_0015	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APL_0016	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APL_0016	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APL_0018	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APL_0018	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APL_0018	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APL_0018	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APL_0019	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APL_0019	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APL_0020	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APL_0020	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APL_0035	PWY-6825	phosphatidylcholine biosynthesis V
APL_0043	PWY-5269	cardiolipin biosynthesis II
APL_0043	PWY-5668	cardiolipin biosynthesis I
APL_0045	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
APL_0045	PWY-6167	flavin biosynthesis II (archaea)
APL_0045	PWY-6168	flavin biosynthesis III (fungi)
APL_0051	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APL_0051	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
APL_0052	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APL_0062	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APL_0062	PWY-5723	Rubisco shunt
APL_0072	PWY-5057	L-valine degradation II
APL_0072	PWY-5076	L-leucine degradation III
APL_0072	PWY-5078	L-isoleucine degradation II
APL_0072	PWY-5101	L-isoleucine biosynthesis II
APL_0072	PWY-5103	L-isoleucine biosynthesis III
APL_0072	PWY-5104	L-isoleucine biosynthesis IV
APL_0072	PWY-5108	L-isoleucine biosynthesis V
APL_0079	PWY-5350	thiosulfate disproportionation III (rhodanese)
APL_0085	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APL_0085	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
APL_0087	PWY-5381	pyridine nucleotide cycling (plants)
APL_0097	PWY-5101	L-isoleucine biosynthesis II
APL_0097	PWY-5103	L-isoleucine biosynthesis III
APL_0097	PWY-5104	L-isoleucine biosynthesis IV
APL_0097	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APL_0099	PWY-5101	L-isoleucine biosynthesis II
APL_0099	PWY-5103	L-isoleucine biosynthesis III
APL_0099	PWY-5104	L-isoleucine biosynthesis IV
APL_0099	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
APL_0099	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APL_0099	PWY-6389	(<i>S</i>)-acetoin biosynthesis
APL_0099	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APL_0100	PWY-5674	nitrate reduction IV (dissimilatory)
APL_0101	PWY-5674	nitrate reduction IV (dissimilatory)
APL_0106	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
APL_0106	PWY-6853	ethylene biosynthesis II (microbes)
APL_0106	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APL_0112	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APL_0112	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APL_0115	PWY-3841	folate transformations II
APL_0115	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APL_0115	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APL_0115	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APL_0115	PWY-7199	pyrimidine deoxyribonucleosides salvage
APL_0115	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APL_0117	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
APL_0136	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
APL_0136	PWY-7177	UTP and CTP dephosphorylation II
APL_0136	PWY-7185	UTP and CTP dephosphorylation I
APL_0147	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APL_0147	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APL_0147	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APL_0147	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APL_0147	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APL_0147	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APL_0147	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APL_0147	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APL_0148	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APL_0148	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APL_0148	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APL_0148	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APL_0148	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APL_0148	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APL_0148	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APL_0148	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APL_0160	PWY-3341	L-proline biosynthesis III
APL_0160	PWY-4981	L-proline biosynthesis II (from arginine)
APL_0160	PWY-6344	L-ornithine degradation II (Stickland reaction)
APL_0177	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APL_0177	PWY-6148	tetrahydromethanopterin biosynthesis
APL_0177	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
APL_0177	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APL_0181	PWY-5386	methylglyoxal degradation I
APL_0184	PWY-3461	L-tyrosine biosynthesis II
APL_0184	PWY-3462	L-phenylalanine biosynthesis II
APL_0184	PWY-6120	L-tyrosine biosynthesis III
APL_0184	PWY-6627	salinosporamide A biosynthesis
APL_0184	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
APL_0185	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APL_0185	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
APL_0185	PWY-6164	3-dehydroquinate biosynthesis I
APL_0187	PWY-1042	glycolysis IV (plant cytosol)
APL_0187	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APL_0187	PWY-5484	glycolysis II (from fructose 6-phosphate)
APL_0187	PWY-5723	Rubisco shunt
APL_0187	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APL_0187	PWY-6886	1-butanol autotrophic biosynthesis
APL_0187	PWY-6901	superpathway of glucose and xylose degradation
APL_0187	PWY-7003	glycerol degradation to butanol
APL_0187	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APL_0187	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APL_0193	PWY-6164	3-dehydroquinate biosynthesis I
APL_0194	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APL_0202	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APL_0202	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APL_0202	PWY-6896	thiamin salvage I
APL_0202	PWY-6897	thiamin salvage II
APL_0203	PWY-5269	cardiolipin biosynthesis II
APL_0203	PWY-5668	cardiolipin biosynthesis I
APL_0206	PWY-2301	<i>myo</i>-inositol biosynthesis
APL_0206	PWY-4702	phytate degradation I
APL_0206	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
APL_0207	PWY-6891	thiazole biosynthesis II (Bacillus)
APL_0207	PWY-6892	thiazole biosynthesis I (E. coli)
APL_0207	PWY-7560	methylerythritol phosphate pathway II
APL_0211	PWY-1622	formaldehyde assimilation I (serine pathway)
APL_0211	PWY-181	photorespiration
APL_0211	PWY-2161	folate polyglutamylation
APL_0211	PWY-2201	folate transformations I
APL_0211	PWY-3661	glycine betaine degradation I
APL_0211	PWY-3661-1	glycine betaine degradation II (mammalian)
APL_0211	PWY-3841	folate transformations II
APL_0211	PWY-5497	purine nucleobases degradation II (anaerobic)
APL_0212	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
APL_0212	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APL_0212	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
APL_0241	PWY-6502	oxidized GTP and dGTP detoxification
APL_0242	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APL_0242	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APL_0243	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APL_0243	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APL_0247	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APL_0248	PWY-6936	seleno-amino acid biosynthesis
APL_0249	PWY-702	L-methionine biosynthesis II
APL_0250	PWY-2941	L-lysine biosynthesis II
APL_0250	PWY-2942	L-lysine biosynthesis III
APL_0250	PWY-5097	L-lysine biosynthesis VI
APL_0250	PWY-6559	spermidine biosynthesis II
APL_0250	PWY-6562	norspermidine biosynthesis
APL_0250	PWY-7153	grixazone biosynthesis
APL_0251	PWY-6854	ethylene biosynthesis III (microbes)
APL_0252	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APL_0256	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APL_0266	PWY-6605	adenine and adenosine salvage II
APL_0266	PWY-6610	adenine and adenosine salvage IV
APL_0275	PWY-5269	cardiolipin biosynthesis II
APL_0275	PWY-5668	cardiolipin biosynthesis I
APL_0285	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
APL_0285	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
APL_0285	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
APL_0285	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
APL_0285	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
APL_0285	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
APL_0285	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
APL_0285	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
APL_0285	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
APL_0285	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
APL_0310	PWY-6823	molybdenum cofactor biosynthesis
APL_0311	PWY-6823	molybdenum cofactor biosynthesis
APL_0318	PWY-5686	UMP biosynthesis
APL_0319	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APL_0319	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
APL_0319	PWY-6936	seleno-amino acid biosynthesis
APL_0319	PWY-702	L-methionine biosynthesis II
APL_0320	PWY-6936	seleno-amino acid biosynthesis
APL_0327	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
APL_0339	PWY-1622	formaldehyde assimilation I (serine pathway)
APL_0339	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APL_0339	PWY-5913	TCA cycle VI (obligate autotrophs)
APL_0339	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APL_0339	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
APL_0339	PWY-6549	L-glutamine biosynthesis III
APL_0339	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APL_0339	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APL_0339	PWY-7124	ethylene biosynthesis V (engineered)
APL_0343	PWY-7310	D-glucosaminate degradation
APL_0346	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APL_0346	PWY-622	starch biosynthesis
APL_0348	PWY-622	starch biosynthesis
APL_0349	PWY-622	starch biosynthesis
APL_0350	PWY-5941	glycogen degradation II (eukaryotic)
APL_0350	PWY-622	starch biosynthesis
APL_0350	PWY-6731	starch degradation III
APL_0350	PWY-6737	starch degradation V
APL_0350	PWY-7238	sucrose biosynthesis II
APL_0351	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APL_0351	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
APL_0351	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APL_0351	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APL_0351	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
APL_0351	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APL_0351	PWY-7205	CMP phosphorylation
APL_0351	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APL_0351	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APL_0351	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APL_0351	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APL_0351	PWY-7224	purine deoxyribonucleosides salvage
APL_0351	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APL_0351	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APL_0353	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
APL_0353	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
APL_0375	PWY-4261	glycerol degradation I
APL_0379	PWY-4261	glycerol degradation I
APL_0379	PWY-6118	glycerol-3-phosphate shuttle
APL_0379	PWY-6952	glycerophosphodiester degradation
APL_0380	PWY-4261	glycerol degradation I
APL_0380	PWY-6118	glycerol-3-phosphate shuttle
APL_0380	PWY-6952	glycerophosphodiester degradation
APL_0383	PWY-6167	flavin biosynthesis II (archaea)
APL_0383	PWY-6168	flavin biosynthesis III (fungi)
APL_0383	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APL_0384	PWY-6167	flavin biosynthesis II (archaea)
APL_0384	PWY-6168	flavin biosynthesis III (fungi)
APL_0384	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APL_0385	PWY-6167	flavin biosynthesis II (archaea)
APL_0385	PWY-6168	flavin biosynthesis III (fungi)
APL_0388	PWY-5988	wound-induced proteolysis I
APL_0388	PWY-6018	seed germination protein turnover
APL_0393	PWY-6871	3-methylbutanol biosynthesis
APL_0398	PWY-7183	pyrimidine nucleobases salvage I
APL_0401	PWY-7183	pyrimidine nucleobases salvage I
APL_0404	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APL_0406	PWY-7560	methylerythritol phosphate pathway II
APL_0408	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APL_0408	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APL_0408	PWY-5989	stearate biosynthesis II (bacteria and plants)
APL_0408	PWY-5994	palmitate biosynthesis I (animals and fungi)
APL_0408	PWY-6113	superpathway of mycolate biosynthesis
APL_0408	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APL_0408	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APL_0408	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APL_0408	PWYG-321	mycolate biosynthesis
APL_0415	PWY-5386	methylglyoxal degradation I
APL_0422	PWY-4983	L-citrulline-nitric oxide cycle
APL_0422	PWY-4984	urea cycle
APL_0422	PWY-5	canavanine biosynthesis
APL_0422	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APL_0422	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APL_0425	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APL_0425	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APL_0425	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APL_0425	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APL_0432	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APL_0434	PWY-1042	glycolysis IV (plant cytosol)
APL_0434	PWY-5484	glycolysis II (from fructose 6-phosphate)
APL_0434	PWY-6901	superpathway of glucose and xylose degradation
APL_0434	PWY-7003	glycerol degradation to butanol
APL_0441	PWY-5344	L-homocysteine biosynthesis
APL_0451	PWY-5392	reductive TCA cycle II
APL_0451	PWY-5537	pyruvate fermentation to acetate V
APL_0451	PWY-5538	pyruvate fermentation to acetate VI
APL_0451	PWY-5690	TCA cycle II (plants and fungi)
APL_0451	PWY-5913	TCA cycle VI (obligate autotrophs)
APL_0451	PWY-6728	methylaspartate cycle
APL_0451	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APL_0451	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APL_0452	PWY-5392	reductive TCA cycle II
APL_0452	PWY-5537	pyruvate fermentation to acetate V
APL_0452	PWY-5538	pyruvate fermentation to acetate VI
APL_0452	PWY-5690	TCA cycle II (plants and fungi)
APL_0452	PWY-5913	TCA cycle VI (obligate autotrophs)
APL_0452	PWY-6728	methylaspartate cycle
APL_0452	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APL_0452	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APL_0454	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APL_0455	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APL_0464	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
APL_0466	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
APL_0466	PWY-2161	folate polyglutamylation
APL_0466	PWY-2201	folate transformations I
APL_0466	PWY-3841	folate transformations II
APL_0515	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APL_0535	PWY-6891	thiazole biosynthesis II (Bacillus)
APL_0535	PWY-6892	thiazole biosynthesis I (E. coli)
APL_0536	PWY-6892	thiazole biosynthesis I (E. coli)
APL_0536	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
APL_0537	PWY-6899	base-degraded thiamin salvage
APL_0537	PWY-7356	thiamin salvage IV (yeast)
APL_0540	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APL_0540	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APL_0540	PWY-6897	thiamin salvage II
APL_0540	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
APL_0540	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
APL_0540	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
APL_0540	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APL_0588	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APL_0591	PWY-6749	CMP-legionaminate biosynthesis I
APL_0592	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APL_0593	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APL_0593	PWY-6596	adenosine nucleotides degradation I
APL_0593	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APL_0614	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
APL_0620	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APL_0620	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
APL_0620	PWY-6164	3-dehydroquinate biosynthesis I
APL_0622	PWY-7199	pyrimidine deoxyribonucleosides salvage
APL_0624	PWY-5484	glycolysis II (from fructose 6-phosphate)
APL_0625	PWY-5663	tetrahydrobiopterin biosynthesis I
APL_0625	PWY-5664	tetrahydrobiopterin biosynthesis II
APL_0625	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APL_0625	PWY-6703	preQ<sub>0</sub> biosynthesis
APL_0625	PWY-6983	tetrahydrobiopterin biosynthesis III
APL_0625	PWY-7442	drosopterin and aurodrosopterin biosynthesis
APL_0631	PWY-4381	fatty acid biosynthesis initiation I
APL_0631	PWY-5743	3-hydroxypropanoate cycle
APL_0631	PWY-5744	glyoxylate assimilation
APL_0631	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APL_0631	PWY-6679	jadomycin biosynthesis
APL_0631	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APL_0632	PWY-2161	folate polyglutamylation
APL_0644	PWY-1281	sulfoacetaldehyde degradation I
APL_0644	PWY-5482	pyruvate fermentation to acetate II
APL_0644	PWY-5485	pyruvate fermentation to acetate IV
APL_0644	PWY-5497	purine nucleobases degradation II (anaerobic)
APL_0644	PWY-6637	sulfolactate degradation II
APL_0645	PWY-5482	pyruvate fermentation to acetate II
APL_0645	PWY-5485	pyruvate fermentation to acetate IV
APL_0645	PWY-5497	purine nucleobases degradation II (anaerobic)
APL_0651	PWY-3801	sucrose degradation II (sucrose synthase)
APL_0651	PWY-6527	stachyose degradation
APL_0651	PWY-6981	chitin biosynthesis
APL_0651	PWY-7238	sucrose biosynthesis II
APL_0651	PWY-7343	UDP-glucose biosynthesis
APL_0652	PWY-6749	CMP-legionaminate biosynthesis I
APL_0659	PWY-6123	inosine-5'-phosphate biosynthesis I
APL_0659	PWY-7234	inosine-5'-phosphate biosynthesis III
APL_0662	PWY-5913	TCA cycle VI (obligate autotrophs)
APL_0662	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
APL_0662	PWY-6638	sulfolactate degradation III
APL_0662	PWY-6642	(<i>R</i>)-cysteate degradation
APL_0662	PWY-6643	coenzyme M biosynthesis II
APL_0662	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APL_0662	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APL_0662	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APL_0679	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APL_0682	PWY-6599	guanine and guanosine salvage II
APL_0682	PWY-6609	adenine and adenosine salvage III
APL_0682	PWY-6610	adenine and adenosine salvage IV
APL_0682	PWY-6620	guanine and guanosine salvage
APL_0684	PWY-2941	L-lysine biosynthesis II
APL_0684	PWY-2942	L-lysine biosynthesis III
APL_0684	PWY-5097	L-lysine biosynthesis VI
APL_0687	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APL_0687	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APL_0687	PWY-6454	vancomycin resistance I
APL_0687	PWY-6901	superpathway of glucose and xylose degradation
APL_0690	PWY-6823	molybdenum cofactor biosynthesis
APL_0693	PWY-6823	molybdenum cofactor biosynthesis
APL_0698	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APL_0699	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APL_0701	PWY-5344	L-homocysteine biosynthesis
APL_0701	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
APL_0710	PWY-2941	L-lysine biosynthesis II
APL_0710	PWY-2942	L-lysine biosynthesis III
APL_0710	PWY-5097	L-lysine biosynthesis VI
APL_0710	PWY-6559	spermidine biosynthesis II
APL_0710	PWY-6562	norspermidine biosynthesis
APL_0710	PWY-7153	grixazone biosynthesis
APL_0723	PWY-6700	queuosine biosynthesis
APL_0726	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APL_0726	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APL_0726	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APL_0726	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APL_0727	PWY-5101	L-isoleucine biosynthesis II
APL_0727	PWY-5103	L-isoleucine biosynthesis III
APL_0727	PWY-5104	L-isoleucine biosynthesis IV
APL_0727	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
APL_0727	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APL_0727	PWY-6389	(<i>S</i>)-acetoin biosynthesis
APL_0727	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APL_0728	PWY-5101	L-isoleucine biosynthesis II
APL_0728	PWY-5103	L-isoleucine biosynthesis III
APL_0728	PWY-5104	L-isoleucine biosynthesis IV
APL_0728	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
APL_0728	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APL_0728	PWY-6389	(<i>S</i>)-acetoin biosynthesis
APL_0728	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APL_0736	PWY-5686	UMP biosynthesis
APL_0741	PWY-7205	CMP phosphorylation
APL_0748	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APL_0751	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
APL_0751	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
APL_0755	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APL_0755	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APL_0755	PWY-5989	stearate biosynthesis II (bacteria and plants)
APL_0755	PWY-6113	superpathway of mycolate biosynthesis
APL_0755	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APL_0755	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APL_0755	PWY-7096	triclosan resistance
APL_0755	PWYG-321	mycolate biosynthesis
APL_0765	PWY-6700	queuosine biosynthesis
APL_0768	PWY-7039	phosphatidate metabolism, as a signaling molecule
APL_0771	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
APL_0771	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APL_0773	PWY-6891	thiazole biosynthesis II (Bacillus)
APL_0773	PWY-6892	thiazole biosynthesis I (E. coli)
APL_0773	PWY-7560	methylerythritol phosphate pathway II
APL_0774	PWY-5686	UMP biosynthesis
APL_0776	PWY-7560	methylerythritol phosphate pathway II
APL_0789	PWY-723	alkylnitronates degradation
APL_0798	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
APL_0800	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APL_0800	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APL_0802	PWY-7560	methylerythritol phosphate pathway II
APL_0803	PWY-7560	methylerythritol phosphate pathway II
APL_0818	PWY-5691	urate degradation to allantoin I
APL_0818	PWY-7394	urate degradation to allantoin II
APL_0824	PWY-6123	inosine-5'-phosphate biosynthesis I
APL_0824	PWY-6124	inosine-5'-phosphate biosynthesis II
APL_0824	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APL_0824	PWY-7234	inosine-5'-phosphate biosynthesis III
APL_0832	PWY-1622	formaldehyde assimilation I (serine pathway)
APL_0832	PWY-5484	glycolysis II (from fructose 6-phosphate)
APL_0834	PWY-7193	pyrimidine ribonucleosides salvage I
APL_0835	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APL_0844	PWY-6700	queuosine biosynthesis
APL_0853	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APL_0853	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
APL_0853	PWY-6936	seleno-amino acid biosynthesis
APL_0853	PWY-702	L-methionine biosynthesis II
APL_0854	PWY-2201	folate transformations I
APL_0854	PWY-3841	folate transformations II
APL_0868	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
APL_0883	PWY-3841	folate transformations II
APL_0883	PWY-6614	tetrahydrofolate biosynthesis
APL_0888	PWY-1361	benzoyl-CoA degradation I (aerobic)
APL_0888	PWY-5109	2-methylbutanoate biosynthesis
APL_0888	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
APL_0888	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
APL_0888	PWY-5177	glutaryl-CoA degradation
APL_0888	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APL_0888	PWY-6435	4-hydroxybenzoate biosynthesis V
APL_0888	PWY-6583	pyruvate fermentation to butanol I
APL_0888	PWY-6863	pyruvate fermentation to hexanol
APL_0888	PWY-6883	pyruvate fermentation to butanol II
APL_0888	PWY-6944	androstenedione degradation
APL_0888	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
APL_0888	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
APL_0888	PWY-7007	methyl ketone biosynthesis
APL_0888	PWY-7046	4-coumarate degradation (anaerobic)
APL_0888	PWY-7094	fatty acid salvage
APL_0888	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APL_0888	PWY-735	jasmonic acid biosynthesis
APL_0888	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
APL_0897	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
APL_0897	PWY-2201	folate transformations I
APL_0897	PWY-3841	folate transformations II
APL_0897	PWY-5030	L-histidine degradation III
APL_0897	PWY-5497	purine nucleobases degradation II (anaerobic)
APL_0897	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
APL_0899	PWY-2941	L-lysine biosynthesis II
APL_0899	PWY-2942	L-lysine biosynthesis III
APL_0899	PWY-5097	L-lysine biosynthesis VI
APL_0903	PWY-5663	tetrahydrobiopterin biosynthesis I
APL_0903	PWY-5664	tetrahydrobiopterin biosynthesis II
APL_0903	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APL_0903	PWY-6703	preQ<sub>0</sub> biosynthesis
APL_0903	PWY-6983	tetrahydrobiopterin biosynthesis III
APL_0903	PWY-7442	drosopterin and aurodrosopterin biosynthesis
APL_0931	PWY-6823	molybdenum cofactor biosynthesis
APL_0931	PWY-6891	thiazole biosynthesis II (Bacillus)
APL_0931	PWY-6892	thiazole biosynthesis I (E. coli)
APL_0931	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
APL_0938	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
APL_0939	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APL_0945	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APL_0945	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APL_0958	PWY-6123	inosine-5'-phosphate biosynthesis I
APL_0958	PWY-6124	inosine-5'-phosphate biosynthesis II
APL_0958	PWY-7234	inosine-5'-phosphate biosynthesis III
APL_0983	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APL_0983	PWY-5723	Rubisco shunt
APL_0983	PWY-6891	thiazole biosynthesis II (Bacillus)
APL_0983	PWY-6892	thiazole biosynthesis I (E. coli)
APL_0983	PWY-6901	superpathway of glucose and xylose degradation
APL_0983	PWY-7560	methylerythritol phosphate pathway II
APL_0988	PWY-5506	methanol oxidation to formaldehyde IV
APL_0992	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APL_0992	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APL_0992	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APL_0992	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APL_0992	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APL_0992	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APL_0992	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APL_0992	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APL_0993	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APL_0993	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APL_0993	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APL_0993	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APL_0993	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APL_0993	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APL_0993	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APL_0993	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APL_0994	PWY-6317	galactose degradation I (Leloir pathway)
APL_0994	PWY-6527	stachyose degradation
APL_0995	PWY-3821	galactose degradation III
APL_0995	PWY-6317	galactose degradation I (Leloir pathway)
APL_0995	PWY-6527	stachyose degradation
APL_0996	PWY-2723	trehalose degradation V
APL_0996	PWY-6317	galactose degradation I (Leloir pathway)
APL_0996	PWY-6737	starch degradation V
APL_0997	PWY-6807	xyloglucan degradation II (exoglucanase)
APL_1009	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APL_1009	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APL_1010	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APL_1010	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APL_1011	PWY-3162	L-tryptophan degradation V (side chain pathway)
APL_1011	PWY-5057	L-valine degradation II
APL_1011	PWY-5076	L-leucine degradation III
APL_1011	PWY-5078	L-isoleucine degradation II
APL_1011	PWY-5079	L-phenylalanine degradation III
APL_1011	PWY-5082	L-methionine degradation III
APL_1011	PWY-5162	2-oxopentenoate degradation
APL_1011	PWY-5436	L-threonine degradation IV
APL_1011	PWY-5480	pyruvate fermentation to ethanol I
APL_1011	PWY-5486	pyruvate fermentation to ethanol II
APL_1011	PWY-5751	phenylethanol biosynthesis
APL_1011	PWY-6028	acetoin degradation
APL_1011	PWY-6313	serotonin degradation
APL_1011	PWY-6333	acetaldehyde biosynthesis I
APL_1011	PWY-6342	noradrenaline and adrenaline degradation
APL_1011	PWY-6587	pyruvate fermentation to ethanol III
APL_1011	PWY-6802	salidroside biosynthesis
APL_1011	PWY-6871	3-methylbutanol biosynthesis
APL_1011	PWY-7013	L-1,2-propanediol degradation
APL_1011	PWY-7085	triethylamine degradation
APL_1011	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APL_1011	PWY-7118	chitin degradation to ethanol
APL_1011	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
APL_1011	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APL_1011	PWY-7557	dehydrodiconiferyl alcohol degradation
APL_1014	PWY-4202	arsenate detoxification I (glutaredoxin)
APL_1014	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APL_1014	PWY-6608	guanosine nucleotides degradation III
APL_1014	PWY-6609	adenine and adenosine salvage III
APL_1014	PWY-6611	adenine and adenosine salvage V
APL_1014	PWY-6620	guanine and guanosine salvage
APL_1014	PWY-6627	salinosporamide A biosynthesis
APL_1014	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
APL_1014	PWY-7179	purine deoxyribonucleosides degradation I
APL_1014	PWY-7179-1	purine deoxyribonucleosides degradation
APL_1015	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
APL_1018	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APL_1018	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
APL_1018	PWY-7242	D-fructuronate degradation
APL_1018	PWY-7310	D-glucosaminate degradation
APL_1020	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
APL_1020	PWY-7248	pectin degradation III
APL_1033	PWY-3461	L-tyrosine biosynthesis II
APL_1033	PWY-3462	L-phenylalanine biosynthesis II
APL_1033	PWY-6120	L-tyrosine biosynthesis III
APL_1033	PWY-6627	salinosporamide A biosynthesis
APL_1033	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
APL_1036	PWY-5480	pyruvate fermentation to ethanol I
APL_1036	PWY-5485	pyruvate fermentation to acetate IV
APL_1036	PWY-5493	reductive monocarboxylic acid cycle
APL_1042	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
APL_1042	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
APL_1042	PWY-5901	2,3-dihydroxybenzoate biosynthesis
APL_1042	PWY-6406	salicylate biosynthesis I
APL_1048	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
APL_1048	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APL_1075	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APL_1080	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APL_1080	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
APL_1085	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APL_1089	PWY-4202	arsenate detoxification I (glutaredoxin)
APL_1089	PWY-4621	arsenate detoxification II (glutaredoxin)
APL_1091	PWY-5392	reductive TCA cycle II
APL_1091	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APL_1091	PWY-5690	TCA cycle II (plants and fungi)
APL_1091	PWY-5913	TCA cycle VI (obligate autotrophs)
APL_1091	PWY-6728	methylaspartate cycle
APL_1091	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APL_1091	PWY-7254	TCA cycle VII (acetate-producers)
APL_1091	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APL_1095	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APL_1095	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APL_1095	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APL_1096	PWY-6902	chitin degradation II
APL_1097	PWY-6703	preQ<sub>0</sub> biosynthesis
APL_1099	PWY-6703	preQ<sub>0</sub> biosynthesis
APL_1101	PWY-5988	wound-induced proteolysis I
APL_1101	PWY-6018	seed germination protein turnover
APL_1107	PWY-5667	CDP-diacylglycerol biosynthesis I
APL_1107	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
APL_1111	PWY-6902	chitin degradation II
APL_1113	PWY-1042	glycolysis IV (plant cytosol)
APL_1113	PWY-1622	formaldehyde assimilation I (serine pathway)
APL_1113	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APL_1113	PWY-5484	glycolysis II (from fructose 6-phosphate)
APL_1113	PWY-5723	Rubisco shunt
APL_1113	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APL_1113	PWY-6886	1-butanol autotrophic biosynthesis
APL_1113	PWY-6901	superpathway of glucose and xylose degradation
APL_1113	PWY-7003	glycerol degradation to butanol
APL_1113	PWY-7124	ethylene biosynthesis V (engineered)
APL_1113	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APL_1124	PWY-1042	glycolysis IV (plant cytosol)
APL_1124	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APL_1124	PWY-5484	glycolysis II (from fructose 6-phosphate)
APL_1124	PWY-7385	1,3-propanediol biosynthesis (engineered)
APL_1137	PWY-3801	sucrose degradation II (sucrose synthase)
APL_1137	PWY-5054	sorbitol biosynthesis I
APL_1137	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
APL_1137	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APL_1137	PWY-5659	GDP-mannose biosynthesis
APL_1137	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APL_1137	PWY-621	sucrose degradation III (sucrose invertase)
APL_1137	PWY-622	starch biosynthesis
APL_1137	PWY-6531	mannitol cycle
APL_1137	PWY-6981	chitin biosynthesis
APL_1137	PWY-7238	sucrose biosynthesis II
APL_1137	PWY-7347	sucrose biosynthesis III
APL_1137	PWY-7385	1,3-propanediol biosynthesis (engineered)
APL_1139	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APL_1145	PWY-5958	acridone alkaloid biosynthesis
APL_1145	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APL_1145	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APL_1147	PWY-5958	acridone alkaloid biosynthesis
APL_1147	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APL_1147	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APL_1155	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APL_1155	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
APL_1155	PWY-6936	seleno-amino acid biosynthesis
APL_1155	PWY-702	L-methionine biosynthesis II
APL_1163	PWY-5958	acridone alkaloid biosynthesis
APL_1163	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APL_1163	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APL_1164	PWY-5958	acridone alkaloid biosynthesis
APL_1164	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APL_1164	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APL_1172	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APL_1172	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APL_1172	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APL_1176	PWY-7560	methylerythritol phosphate pathway II
APL_1179	PWY-4983	L-citrulline-nitric oxide cycle
APL_1179	PWY-4984	urea cycle
APL_1179	PWY-5	canavanine biosynthesis
APL_1179	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APL_1179	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APL_1203	PWY-6012	acyl carrier protein metabolism I
APL_1204	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APL_1208	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APL_1208	PWY-3162	L-tryptophan degradation V (side chain pathway)
APL_1208	PWY-5057	L-valine degradation II
APL_1208	PWY-5076	L-leucine degradation III
APL_1208	PWY-5078	L-isoleucine degradation II
APL_1208	PWY-5079	L-phenylalanine degradation III
APL_1208	PWY-5082	L-methionine degradation III
APL_1208	PWY-5480	pyruvate fermentation to ethanol I
APL_1208	PWY-5486	pyruvate fermentation to ethanol II
APL_1208	PWY-5751	phenylethanol biosynthesis
APL_1208	PWY-6028	acetoin degradation
APL_1208	PWY-6313	serotonin degradation
APL_1208	PWY-6333	acetaldehyde biosynthesis I
APL_1208	PWY-6342	noradrenaline and adrenaline degradation
APL_1208	PWY-6587	pyruvate fermentation to ethanol III
APL_1208	PWY-6802	salidroside biosynthesis
APL_1208	PWY-6871	3-methylbutanol biosynthesis
APL_1208	PWY-7013	L-1,2-propanediol degradation
APL_1208	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APL_1208	PWY-7118	chitin degradation to ethanol
APL_1208	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APL_1208	PWY-7557	dehydrodiconiferyl alcohol degradation
APL_1216	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
APL_1216	PWY-6153	autoinducer AI-2 biosynthesis I
APL_1216	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
APL_1222	PWY-2941	L-lysine biosynthesis II
APL_1222	PWY-2942	L-lysine biosynthesis III
APL_1222	PWY-5097	L-lysine biosynthesis VI
APL_1222	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APL_1222	PWY-6559	spermidine biosynthesis II
APL_1222	PWY-6562	norspermidine biosynthesis
APL_1222	PWY-7153	grixazone biosynthesis
APL_1222	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APL_1232	PWY-5941	glycogen degradation II (eukaryotic)
APL_1232	PWY-622	starch biosynthesis
APL_1232	PWY-6731	starch degradation III
APL_1232	PWY-6737	starch degradation V
APL_1232	PWY-7238	sucrose biosynthesis II
APL_1240	PWY-5941	glycogen degradation II (eukaryotic)
APL_1240	PWY-6724	starch degradation II
APL_1240	PWY-6737	starch degradation V
APL_1240	PWY-7238	sucrose biosynthesis II
APL_1243	PWY-4081	glutathione redox reactions I
APL_1250	PWY-1042	glycolysis IV (plant cytosol)
APL_1250	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APL_1250	PWY-5484	glycolysis II (from fructose 6-phosphate)
APL_1250	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APL_1250	PWY-7385	1,3-propanediol biosynthesis (engineered)
APL_1251	PWY-1042	glycolysis IV (plant cytosol)
APL_1251	PWY-5484	glycolysis II (from fructose 6-phosphate)
APL_1251	PWY-6886	1-butanol autotrophic biosynthesis
APL_1251	PWY-6901	superpathway of glucose and xylose degradation
APL_1251	PWY-7003	glycerol degradation to butanol
APL_1275	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APL_1286	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APL_1286	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APL_1296	PWY-1622	formaldehyde assimilation I (serine pathway)
APL_1296	PWY-5392	reductive TCA cycle II
APL_1296	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APL_1296	PWY-5690	TCA cycle II (plants and fungi)
APL_1296	PWY-5913	TCA cycle VI (obligate autotrophs)
APL_1296	PWY-6728	methylaspartate cycle
APL_1296	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APL_1296	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APL_1296	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APL_1298	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APL_1301	PWY-3821	galactose degradation III
APL_1301	PWY-6317	galactose degradation I (Leloir pathway)
APL_1301	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
APL_1301	PWY-6527	stachyose degradation
APL_1301	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
APL_1301	PWY-7344	UDP-D-galactose biosynthesis
APL_1310	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APL_1310	PWY-6855	chitin degradation I (archaea)
APL_1310	PWY-6906	chitin derivatives degradation
APL_1311	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APL_1317	PWY-4981	L-proline biosynthesis II (from arginine)
APL_1317	PWY-4984	urea cycle
APL_1317	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APL_1319	PWY-7310	D-glucosaminate degradation
APL_1342	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APL_1342	PWY-6148	tetrahydromethanopterin biosynthesis
APL_1342	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
APL_1342	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APL_1343	PWY-6556	pyrimidine ribonucleosides salvage II
APL_1343	PWY-7181	pyrimidine deoxyribonucleosides degradation
APL_1343	PWY-7193	pyrimidine ribonucleosides salvage I
APL_1343	PWY-7199	pyrimidine deoxyribonucleosides salvage
APL_1375	PWY-6339	syringate degradation
APL_1377	PWY-6339	syringate degradation
APL_1384	PWY-4381	fatty acid biosynthesis initiation I
APL_1391	PWY-7310	D-glucosaminate degradation
APL_1395	PWY-3861	mannitol degradation II
APL_1395	PWY-3881	mannitol biosynthesis
APL_1395	PWY-5659	GDP-mannose biosynthesis
APL_1395	PWY-7456	mannan degradation
APL_1395	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
APL_1407	PWY-5669	phosphatidylethanolamine biosynthesis I
APL_1408	PWY-6840	homoglutathione biosynthesis
APL_1408	PWY-7255	ergothioneine biosynthesis I (bacteria)
APL_1414	PWY-7254	TCA cycle VII (acetate-producers)
APL_1422	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APL_1422	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APL_1450	PWY-5484	glycolysis II (from fructose 6-phosphate)
APL_1453	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APL_1453	PWY-5723	Rubisco shunt
APL_1454	PWY-6749	CMP-legionaminate biosynthesis I
APL_1461	PWY-5839	menaquinol-7 biosynthesis
APL_1461	PWY-5851	demethylmenaquinol-9 biosynthesis
APL_1461	PWY-5852	demethylmenaquinol-8 biosynthesis I
APL_1461	PWY-5853	demethylmenaquinol-6 biosynthesis I
APL_1461	PWY-5890	menaquinol-10 biosynthesis
APL_1461	PWY-5891	menaquinol-11 biosynthesis
APL_1461	PWY-5892	menaquinol-12 biosynthesis
APL_1461	PWY-5895	menaquinol-13 biosynthesis
APL_1467	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
APL_1467	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
APL_1472	PWY-3221	dTDP-L-rhamnose biosynthesis II
APL_1472	PWY-6808	dTDP-D-forosamine biosynthesis
APL_1472	PWY-6942	dTDP-D-desosamine biosynthesis
APL_1472	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
APL_1472	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
APL_1472	PWY-6974	dTDP-L-olivose biosynthesis
APL_1472	PWY-6976	dTDP-L-mycarose biosynthesis
APL_1472	PWY-7104	dTDP-L-megosamine biosynthesis
APL_1472	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
APL_1472	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
APL_1472	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
APL_1472	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
APL_1472	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
APL_1472	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
APL_1472	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
APL_1472	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
APL_1485	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
APL_1485	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APL_1486	PWY-4381	fatty acid biosynthesis initiation I
APL_1486	PWY-5743	3-hydroxypropanoate cycle
APL_1486	PWY-5744	glyoxylate assimilation
APL_1486	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APL_1486	PWY-6679	jadomycin biosynthesis
APL_1486	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APL_1488	PWY-5667	CDP-diacylglycerol biosynthesis I
APL_1488	PWY-5981	CDP-diacylglycerol biosynthesis III
APL_1488	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
APL_1488	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
APL_1510	PWY-5667	CDP-diacylglycerol biosynthesis I
APL_1510	PWY-5981	CDP-diacylglycerol biosynthesis III
APL_1511	PWY-6936	seleno-amino acid biosynthesis
APL_1511	PWY-7274	D-cycloserine biosynthesis
APL_1513	PWY-3961	phosphopantothenate biosynthesis II
APL_1520	PWY-7560	methylerythritol phosphate pathway II
APL_1525	PWY-2941	L-lysine biosynthesis II
APL_1525	PWY-2942	L-lysine biosynthesis III
APL_1525	PWY-5097	L-lysine biosynthesis VI
APL_1528	PWY-3781	aerobic respiration I (cytochrome c)
APL_1528	PWY-4302	aerobic respiration III (alternative oxidase pathway)
APL_1528	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APL_1528	PWY-5690	TCA cycle II (plants and fungi)
APL_1528	PWY-6728	methylaspartate cycle
APL_1528	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APL_1528	PWY-7254	TCA cycle VII (acetate-producers)
APL_1528	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APL_1529	PWY-3781	aerobic respiration I (cytochrome c)
APL_1529	PWY-4302	aerobic respiration III (alternative oxidase pathway)
APL_1529	PWY-5392	reductive TCA cycle II
APL_1529	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APL_1529	PWY-5690	TCA cycle II (plants and fungi)
APL_1529	PWY-5913	TCA cycle VI (obligate autotrophs)
APL_1529	PWY-6728	methylaspartate cycle
APL_1529	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APL_1529	PWY-7254	TCA cycle VII (acetate-producers)
APL_1529	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APL_1529	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APL_1531	PWY-2941	L-lysine biosynthesis II
APL_1531	PWY-5097	L-lysine biosynthesis VI
APL_1549	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
APL_1552	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
APL_1554	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APL_1554	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APL_1554	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APL_1554	PWY-7290	<i>Escherichia coli</i> serotype O86 <i>O</i>-antigen biosynthesis
APL_1554	PWY-7530	&beta;-D-galactosaminyl-(1&rarr;3)-<i>N</i>-acetyl-&alpha;-D-galactosamine biosynthesis
APL_1555	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APL_1564	PWY-4261	glycerol degradation I
APL_1577	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APL_1577	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
APL_1578	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APL_1578	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
APL_1593	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APL_1593	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
APL_1593	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
APL_1594	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APL_1594	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
APL_1596	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APL_1596	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APL_1616	PWY-5704	urea degradation II
APL_1617	PWY-5704	urea degradation II
APL_1618	PWY-5704	urea degradation II
APL_1630	PWY-7310	D-glucosaminate degradation
APL_1631	PWY-6749	CMP-legionaminate biosynthesis I
APL_1637	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
APL_1637	PWY-6153	autoinducer AI-2 biosynthesis I
APL_1637	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
APL_1646	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APL_1648	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APL_1662	PWY-7310	D-glucosaminate degradation
APL_1666	PWY-5530	sorbitol biosynthesis II
APL_1666	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APL_1682	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APL_1682	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APL_1682	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APL_1685	PWY-4261	glycerol degradation I
APL_1698	PWY-5686	UMP biosynthesis
APL_1700	PWY-7310	D-glucosaminate degradation
APL_1703	PWY-6961	L-ascorbate degradation II (bacterial, aerobic)
APL_1715	PWY-7310	D-glucosaminate degradation
APL_1750	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
APL_1750	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
APL_1754	PWY-2941	L-lysine biosynthesis II
APL_1754	PWY-2942	L-lysine biosynthesis III
APL_1754	PWY-5097	L-lysine biosynthesis VI
APL_1755	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APL_1755	PWY-6855	chitin degradation I (archaea)
APL_1755	PWY-6906	chitin derivatives degradation
APL_1756	PWY-6906	chitin derivatives degradation
APL_1756	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
APL_1756	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
APL_1757	PWY-5392	reductive TCA cycle II
APL_1757	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APL_1757	PWY-5690	TCA cycle II (plants and fungi)
APL_1757	PWY-5913	TCA cycle VI (obligate autotrophs)
APL_1757	PWY-6728	methylaspartate cycle
APL_1757	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APL_1757	PWY-7254	TCA cycle VII (acetate-producers)
APL_1757	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APL_1788	PWY-6829	tRNA methylation (yeast)
APL_1788	PWY-7285	methylwyosine biosynthesis
APL_1788	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
APL_1817	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APL_1817	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APL_1817	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APL_1817	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
APL_1817	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APL_1817	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APL_1820	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APL_1820	PWY-5723	Rubisco shunt
APL_1823	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APL_1823	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APL_1823	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APL_1823	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APL_1824	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
APL_1824	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
APL_1839	PWY-4202	arsenate detoxification I (glutaredoxin)
APL_1839	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APL_1839	PWY-6608	guanosine nucleotides degradation III
APL_1839	PWY-6609	adenine and adenosine salvage III
APL_1839	PWY-6611	adenine and adenosine salvage V
APL_1839	PWY-6620	guanine and guanosine salvage
APL_1839	PWY-6627	salinosporamide A biosynthesis
APL_1839	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
APL_1839	PWY-7179	purine deoxyribonucleosides degradation I
APL_1839	PWY-7179-1	purine deoxyribonucleosides degradation
APL_1840	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
APL_1840	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
APL_1840	PWY-6148	tetrahydromethanopterin biosynthesis
APL_1841	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APL_1841	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APL_1842	PWY-6683	sulfate reduction III (assimilatory)
APL_1843	PWY-6683	sulfate reduction III (assimilatory)
APL_1850	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APL_1850	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
APL_1851	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APL_1851	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APL_1853	PWY-5101	L-isoleucine biosynthesis II
APL_1853	PWY-5103	L-isoleucine biosynthesis III
APL_1853	PWY-5104	L-isoleucine biosynthesis IV
APL_1853	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APL_1862	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APL_1862	PWY-6416	quinate degradation II
APL_1862	PWY-6707	gallate biosynthesis
APL_1866	PWY-5964	guanylyl molybdenum cofactor biosynthesis
APL_1876	PWY-6614	tetrahydrofolate biosynthesis
APL_1889	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APL_1889	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APL_1889	PWY-5989	stearate biosynthesis II (bacteria and plants)
APL_1889	PWY-5994	palmitate biosynthesis I (animals and fungi)
APL_1889	PWY-6113	superpathway of mycolate biosynthesis
APL_1889	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APL_1889	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APL_1889	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APL_1889	PWYG-321	mycolate biosynthesis
APL_1893	PWY-181	photorespiration
APL_1907	PWY-4261	glycerol degradation I
APL_1919	PWY-2723	trehalose degradation V
APL_1919	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
APL_1919	PWY-5661	GDP-glucose biosynthesis
APL_1919	PWY-5940	streptomycin biosynthesis
APL_1919	PWY-621	sucrose degradation III (sucrose invertase)
APL_1919	PWY-622	starch biosynthesis
APL_1919	PWY-6731	starch degradation III
APL_1919	PWY-6737	starch degradation V
APL_1919	PWY-6981	chitin biosynthesis
APL_1919	PWY-7238	sucrose biosynthesis II
APL_1919	PWY-7343	UDP-glucose biosynthesis
APL_1925	PWY-1042	glycolysis IV (plant cytosol)
APL_1925	PWY-5484	glycolysis II (from fructose 6-phosphate)
APL_1925	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APL_1925	PWY-7003	glycerol degradation to butanol
APL_1927	PWY-5381	pyridine nucleotide cycling (plants)
APL_1927	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APL_1927	PWY-6596	adenosine nucleotides degradation I
APL_1927	PWY-6606	guanosine nucleotides degradation II
APL_1927	PWY-6607	guanosine nucleotides degradation I
APL_1927	PWY-6608	guanosine nucleotides degradation III
APL_1927	PWY-7185	UTP and CTP dephosphorylation I
APL_1941	PWY-381	nitrate reduction II (assimilatory)
APL_1941	PWY-5675	nitrate reduction V (assimilatory)
APL_1941	PWY-6549	L-glutamine biosynthesis III
APL_1941	PWY-6963	ammonia assimilation cycle I
APL_1941	PWY-6964	ammonia assimilation cycle II
APL_1945	PWY-6012	acyl carrier protein metabolism I
APL_1945	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
APL_1960	PWY-2781	<i>cis</i>-zeatin biosynthesis
APL_1968	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APL_1968	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APL_1968	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APL_1968	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
APL_1974	PWY-6409	pyoverdine I biosynthesis
APL_1974	PWY-6562	norspermidine biosynthesis
APL_1974	PWY-761	rhizobactin 1021 biosynthesis
APL_1982	PWY-5839	menaquinol-7 biosynthesis
APL_1982	PWY-5844	menaquinol-9 biosynthesis
APL_1982	PWY-5849	menaquinol-6 biosynthesis
APL_1982	PWY-5890	menaquinol-10 biosynthesis
APL_1982	PWY-5891	menaquinol-11 biosynthesis
APL_1982	PWY-5892	menaquinol-12 biosynthesis
APL_1982	PWY-5895	menaquinol-13 biosynthesis
APL_1988	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APL_1988	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APL_1992	PWY-5367	petroselinate biosynthesis
APL_1992	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APL_1992	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APL_1992	PWY-5989	stearate biosynthesis II (bacteria and plants)
APL_1992	PWY-5994	palmitate biosynthesis I (animals and fungi)
APL_1992	PWY-6113	superpathway of mycolate biosynthesis
APL_1992	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APL_1992	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APL_1992	PWY-6951	APL_1992|fabG|YP_001054671.1|GeneID:4850097
APL_1992	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
APL_1992	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APL_1992	PWYG-321	mycolate biosynthesis
APL_1993	PWY-4381	fatty acid biosynthesis initiation I
APL_1993	PWY-6799	fatty acid biosynthesis (plant mitochondria)
APL_1993	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APL_2009	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
APL_2009	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APL_2018	PWY-6123	inosine-5'-phosphate biosynthesis I
APL_2018	PWY-6124	inosine-5'-phosphate biosynthesis II
APL_2018	PWY-7234	inosine-5'-phosphate biosynthesis III
APL_2033	PWY-621	sucrose degradation III (sucrose invertase)
APL_2035	PWY-6523	nitrite-dependent anaerobic methane oxidation
APL_2035	PWY-6748	nitrate reduction VII (denitrification)
APL_2035	PWY-7084	nitrifier denitrification
APL_2040	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APL_2040	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
