APE_0002	SSF46785	"Winged helix" DNA-binding domain
APE_0007.1	SSF82171	DPP6 N-terminal domain-like
APE_0009.1	SSF55008	HMA, heavy metal-associated domain
APE_0010.1	SSF81301	Nucleotidyltransferase
APE_0011.1	SSF51569	Aldolase
APE_0012	SSF53613	Ribokinase-like
APE_0013.1	SSF143975	IlvD/EDD N-terminal domain-like
APE_0013.1	SSF52016	LeuD/IlvD-like
APE_0017.1	SSF53067	Actin-like ATPase domain
APE_0020.1	SSF53383	PLP-dependent transferases
APE_0023.1	SSF56784	HAD-like
APE_0025.1	SSF46785	"Winged helix" DNA-binding domain
APE_0026	SSF56059	Glutathione synthetase ATP-binding domain-like
APE_0028	SSF52009	Phosphohistidine domain
APE_0031.1	SSF103473	MFS general substrate transporter
APE_0033.1	SSF53795	PEP carboxykinase-like
APE_0033.1	SSF68923	PEP carboxykinase N-terminal domain
APE_0035.1	SSF53850	Periplasmic binding protein-like II
APE_0038.1	SSF161098	MetI-like
APE_0040.1	SSF161098	MetI-like
APE_0043.1	SSF50331	MOP-like
APE_0043.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0045	SSF53850	Periplasmic binding protein-like II
APE_0047.1	SSF161098	MetI-like
APE_0048	SSF161098	MetI-like
APE_0050	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0051	SSF109755	PhoU-like
APE_0053.1	SSF56529	FAH
APE_0056.1	SSF52096	ClpP/crotonase
APE_0060.1	SSF47413	lambda repressor-like DNA-binding domains
APE_0060.1	SSF53271	PRTase-like
APE_0063	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0067a	SSF53146	Nitrogenase accessory factor-like
APE_0069.1	SSF51283	dUTPase-like
APE_0071.1	SSF56524	Oxidoreductase molybdopterin-binding domain
APE_0073.1	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_0076.1	SSF103481	Multidrug resistance efflux transporter EmrE
APE_0077	SSF53218	Molybdenum cofactor biosynthesis proteins
APE_0079	SSF56276	S-adenosylmethionine decarboxylase
APE_0080.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0084.1	SSF55469	FMN-dependent nitroreductase-like
APE_0085.1	SSF89550	PHP domain-like
APE_0085a	SSF52833	Thioredoxin-like
APE_0086	SSF52833	Thioredoxin-like
APE_0088.1	SSF89447	AbrB/MazE/MraZ-like
APE_0089.1	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
APE_0091	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
APE_0092.1	SSF52768	Arginase/deacetylase
APE_0093.1	SSF89447	AbrB/MazE/MraZ-like
APE_0099	SSF53098	Ribonuclease H-like
APE_0099	SSF56672	DNA/RNA polymerases
APE_0101.1	SSF103501	Respiratory nitrate reductase 1 gamma chain
APE_0101.1	SSF46548	alpha-helical ferredoxin
APE_0103.1	SSF49764	HSP20-like chaperones
APE_0104.1	SSF159659	Cgl1923-like
APE_0104a.1	SSF54862	4Fe-4S ferredoxins
APE_0105	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0107	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0110	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0110	SSF75712	Rad50 coiled-coil Zn hook
APE_0113	SSF56300	Metallo-dependent phosphatases
APE_0113a	SSF57829	Zn-binding ribosomal proteins
APE_0115.1	SSF47807	5' to 3' exonuclease, C-terminal subdomain
APE_0115.1	SSF88723	PIN domain-like
APE_0116.1	SSF88697	PUA domain-like
APE_0117.1	SSF52954	Class II aaRS ABD-related
APE_0119	SSF47794	Rad51 N-terminal domain-like
APE_0119	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0122.1	SSF54197	HIT-like
APE_0124	SSF64182	DHH phosphoesterases
APE_0127	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0134.1	SSF52402	Adenine nucleotide alpha hydrolases-like
APE_0135	SSF52402	Adenine nucleotide alpha hydrolases-like
APE_0135	SSF52467	DHS-like NAD/FAD-binding domain
APE_0137	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
APE_0140.1	SSF52402	Adenine nucleotide alpha hydrolases-like
APE_0141.1	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_0141.1	SSF88697	PUA domain-like
APE_0142	SSF46785	"Winged helix" DNA-binding domain
APE_0142	SSF47979	Iron-dependent repressor protein, dimerization domain
APE_0146.1	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
APE_0146.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_0147.1	SSF55486	Metalloproteases ("zincins"), catalytic domain
APE_0148.1	SSF69819	MTH1598-like
APE_0150.1	SSF48150	DNA-glycosylase
APE_0152.1	SSF46785	"Winged helix" DNA-binding domain
APE_0152.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0152a	SSF46785	"Winged helix" DNA-binding domain
APE_0156.1	SSF161093	MgtE membrane domain-like
APE_0157	SSF100950	NagB/RpiA/CoA transferase-like
APE_0158.1	SSF51730	FAD-linked oxidoreductase
APE_0161.1	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
APE_0161.1	SSF52374	Nucleotidylyl transferase
APE_0162	SSF55979	DNA clamp
APE_0163.1	SSF53720	ALDH-like
APE_0166.1	SSF89028	Cobalamin adenosyltransferase-like
APE_0169.1	SSF53383	PLP-dependent transferases
APE_0171.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_0171.1	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
APE_0173.1	SSF53748	Phosphoglycerate kinase
APE_0176.1	SSF56281	Metallo-hydrolase/oxidoreductase
APE_0177	SSF53218	Molybdenum cofactor biosynthesis proteins
APE_0177	SSF63882	MoeA N-terminal region -like
APE_0178.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0179	SSF53448	Nucleotide-diphospho-sugar transferases
APE_0181	SSF56281	Metallo-hydrolase/oxidoreductase
APE_0182.1	SSF69786	YggU-like
APE_0184.1	SSF103473	MFS general substrate transporter
APE_0188.1	SSF50249	Nucleic acid-binding proteins
APE_0188.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0191.1	SSF158702	Sec63 N-terminal domain-like
APE_0191.1	SSF46785	"Winged helix" DNA-binding domain
APE_0191.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0193.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_0193.1	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
APE_0197.1	SSF47413	lambda repressor-like DNA-binding domains
APE_0198.1	SSF46934	UBA-like
APE_0201.1	SSF51905	FAD/NAD(P)-binding domain
APE_0204.1	SSF56399	ADP-ribosylation
APE_0209.1	SSF50156	PDZ domain-like
APE_0211.1	SSF53613	Ribokinase-like
APE_0212.1	SSF63411	LuxS/MPP-like metallohydrolase
APE_0213.1	SSF81301	Nucleotidyltransferase
APE_0216.1	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_0218	SSF50104	Translation proteins SH3-like domain
APE_0218	SSF50249	Nucleic acid-binding proteins
APE_0219	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0222.1	SSF51621	Phosphoenolpyruvate/pyruvate domain
APE_0226.1	SSF75217	alpha/beta knot
APE_0227	SSF50447	Translation proteins
APE_0228.1	SSF52166	Ribosomal protein L4
APE_0228a.1	SSF54189	Ribosomal proteins S24e, L23 and L15e
APE_0230.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0231	SSF54631	CBS-domain pair
APE_0233	SSF54631	CBS-domain pair
APE_0234	SSF54631	CBS-domain pair
APE_0235.1	SSF55326	PurM N-terminal domain-like
APE_0235.1	SSF56042	PurM C-terminal domain-like
APE_0236.1	SSF53790	Tetrapyrrole methylase
APE_0237.1	SSF54909	Dimeric alpha+beta barrel
APE_0243	SSF52833	Thioredoxin-like
APE_0244.1	SSF52317	Class I glutamine amidotransferase-like
APE_0246.1	SSF51366	Ribulose-phoshate binding barrel
APE_0248.1	SSF53850	Periplasmic binding protein-like II
APE_0249.1	SSF102114	Radical SAM enzymes
APE_0252	SSF102114	Radical SAM enzymes
APE_0254	SSF53850	Periplasmic binding protein-like II
APE_0255.1	SSF53448	Nucleotide-diphospho-sugar transferases
APE_0256a.1	SSF63393	RNA polymerase subunits
APE_0257	SSF50249	Nucleic acid-binding proteins
APE_0257	SSF88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)
APE_0257a	SSF46548	alpha-helical ferredoxin
APE_0258.1	SSF100950	NagB/RpiA/CoA transferase-like
APE_0260.1	SSF51395	FMN-linked oxidoreductases
APE_0261.1	SSF51556	Metallo-dependent hydrolases
APE_0262	SSF51695	PLC-like phosphodiesterases
APE_0263.1	SSF52743	Subtilisin-like
APE_0266.1	SSF48310	Aldehyde ferredoxin oxidoreductase, C-terminal domains
APE_0266.1	SSF56228	Aldehyde ferredoxin oxidoreductase, N-terminal domain
APE_0267	SSF54631	CBS-domain pair
APE_0270.1	SSF161098	MetI-like
APE_0272.1	SSF53850	Periplasmic binding protein-like II
APE_0273	SSF88723	PIN domain-like
APE_0273a	SSF141694	AF2212/PG0164-like
APE_0274a	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_0275.1	SSF48150	DNA-glycosylase
APE_0275b.1	SSF53167	Purine and uridine phosphorylases
APE_0276.1	SSF88723	PIN domain-like
APE_0278	SSF88723	PIN domain-like
APE_0279.1	SSF88723	PIN domain-like
APE_0279a.1	SSF141694	AF2212/PG0164-like
APE_0283a	SSF141694	AF2212/PG0164-like
APE_0287	SSF46458	Globin-like
APE_0288	SSF46785	"Winged helix" DNA-binding domain
APE_0290.1	SSF46785	"Winged helix" DNA-binding domain
APE_0290a	SSF52833	Thioredoxin-like
APE_0291	SSF52833	Thioredoxin-like
APE_0293	SSF46785	"Winged helix" DNA-binding domain
APE_0294.1	SSF49503	Cupredoxins
APE_0297	SSF46785	"Winged helix" DNA-binding domain
APE_0300.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0301.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0302.1	SSF161098	MetI-like
APE_0303	SSF161098	MetI-like
APE_0304.1	SSF49299	PKD domain
APE_0304.1	SSF53850	Periplasmic binding protein-like II
APE_0306.1	SSF53067	Actin-like ATPase domain
APE_0308.1	SSF55103	FAD-linked oxidases, C-terminal domain
APE_0308.1	SSF56176	FAD-binding/transporter-associated domain-like
APE_0309.1	SSF51905	FAD/NAD(P)-binding domain
APE_0311	SSF51621	Phosphoenolpyruvate/pyruvate domain
APE_0313.1	SSF118196	YaeB-like
APE_0314.1	SSF63992	Dipeptide transport protein
APE_0316.1	SSF52768	Arginase/deacetylase
APE_0317.1	SSF53738	Phosphoglucomutase, first 3 domains
APE_0317.1	SSF55957	Phosphoglucomutase, C-terminal domain
APE_0319	SSF52317	Class I glutamine amidotransferase-like
APE_0320.1	SSF54862	4Fe-4S ferredoxins
APE_0322.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0326.1	SSF50249	Nucleic acid-binding proteins
APE_0326.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0330.1	SSF56281	Metallo-hydrolase/oxidoreductase
APE_0333.1	SSF51283	dUTPase-like
APE_0336.1	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
APE_0337.1	SSF51556	Metallo-dependent hydrolases
APE_0338.1	SSF56601	beta-lactamase/transpeptidase-like
APE_0339.1	SSF75005	Arabinanase/levansucrase/invertase
APE_0340.1	SSF52317	Class I glutamine amidotransferase-like
APE_0342.1	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
APE_0343	SSF52080	Ribosomal proteins L15p and L18e
APE_0345.1	SSF55129	Ribosomal protein L30p/L7e
APE_0346	SSF54211	Ribosomal protein S5 domain 2-like
APE_0346	SSF54768	dsRNA-binding domain-like
APE_0347	SSF53137	Translational machinery components
APE_0348	SSF48140	Ribosomal protein L19 (L19e)
APE_0349	SSF52042	Ribosomal protein L32e
APE_0350	SSF56053	Ribosomal protein L6
APE_0352.1	SSF56047	Ribosomal protein S8
APE_0352a	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
APE_0354.1	SSF55282	RL5-like
APE_0356.1	SSF55174	Alpha-L RNA-binding motif
APE_0358	SSF50104	Translation proteins SH3-like domain
APE_0359	SSF50193	Ribosomal protein L14
APE_0360.1	SSF50249	Nucleic acid-binding proteins
APE_0362	SSF101744	Rof/RNase P subunit-like
APE_0362a	SSF46561	Ribosomal protein L29 (L29p)
APE_0363	SSF54814	Prokaryotic type KH domain (KH-domain type II)
APE_0363	SSF54821	Ribosomal protein S3 C-terminal domain
APE_0365	SSF54843	Ribosomal protein L22
APE_0367.1	SSF54570	Ribosomal protein S19
APE_0370	SSF53300	vWA-like
APE_0372.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0374	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
APE_0374	SSF50677	ValRS/IleRS/LeuRS editing domain
APE_0374	SSF52374	Nucleotidylyl transferase
APE_0381.1	SSF55021	ACT-like
APE_0381.1	SSF89447	AbrB/MazE/MraZ-like
APE_0382	SSF56281	Metallo-hydrolase/oxidoreductase
APE_0383.1	SSF54631	CBS-domain pair
APE_0385.1	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
APE_0385.1	SSF56645	Acyl-CoA dehydrogenase NM domain-like
APE_0389	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APE_0390	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APE_0392	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_0392	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
APE_0396.1	SSF56801	Acetyl-CoA synthetase-like
APE_0401.1	SSF53633	Carbamate kinase-like
APE_0404.1	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
APE_0404.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0405.1	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
APE_0405.1	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
APE_0405.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0409.1	SSF160527	V-type ATPase subunit E-like
APE_0410.1	SSF159468	AtpF-like
APE_0412	SSF53383	PLP-dependent transferases
APE_0413	SSF51182	RmlC-like cupins
APE_0413	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0416.1	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_0416b.1	SSF47598	Ribbon-helix-helix
APE_0421	SSF52402	Adenine nucleotide alpha hydrolases-like
APE_0423.1	SSF51556	Metallo-dependent hydrolases
APE_0426.1	SSF53448	Nucleotide-diphospho-sugar transferases
APE_0427.1	SSF52141	Uracil-DNA glycosylase-like
APE_0428.1	SSF54211	Ribosomal protein S5 domain 2-like
APE_0431	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0433a	SSF144210	Nop10-like SnoRNP
APE_0436.1	SSF110993	eIF-2-alpha, C-terminal domain
APE_0436.1	SSF116742	eIF2alpha middle domain-like
APE_0436.1	SSF50249	Nucleic acid-binding proteins
APE_0436a	SSF57829	Zn-binding ribosomal proteins
APE_0436b.1	SSF57829	Zn-binding ribosomal proteins
APE_0438.1	SSF56747	Prim-pol domain
APE_0441.1	SSF55979	DNA clamp
APE_0442.1	SSF57783	Zinc beta-ribbon
APE_0443.1	SSF55257	RBP11-like subunits of RNA polymerase
APE_0445	SSF110324	Ribosomal L27 protein-like
APE_0445	SSF50249	Nucleic acid-binding proteins
APE_0446	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_0449	SSF54686	Ribosomal protein L16p/L10e
APE_0450	SSF53218	Molybdenum cofactor biosynthesis proteins
APE_0450	SSF63867	MoeA C-terminal domain-like
APE_0450	SSF63882	MoeA N-terminal region -like
APE_0457	SSF53383	PLP-dependent transferases
APE_0459	SSF46785	"Winged helix" DNA-binding domain
APE_0461	SSF52980	Restriction endonuclease-like
APE_0462	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0464.1	SSF51338	Composite domain of metallo-dependent hydrolases
APE_0465.1	SSF143437	THUMP domain-like
APE_0465.1	SSF52402	Adenine nucleotide alpha hydrolases-like
APE_0471.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0471a	SSF88723	PIN domain-like
APE_0472	SSF88723	PIN domain-like
APE_0472b.1	SSF141694	AF2212/PG0164-like
APE_0473.1	SSF89447	AbrB/MazE/MraZ-like
APE_0475.1	SSF46785	"Winged helix" DNA-binding domain
APE_0475.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0478.1	SSF102114	Radical SAM enzymes
APE_0481.1	SSF46548	alpha-helical ferredoxin
APE_0487	SSF55103	FAD-linked oxidases, C-terminal domain
APE_0487	SSF56176	FAD-binding/transporter-associated domain-like
APE_0488.1	SSF81301	Nucleotidyltransferase
APE_0489	SSF50800	PK beta-barrel domain-like
APE_0489	SSF51621	Phosphoenolpyruvate/pyruvate domain
APE_0489	SSF52935	PK C-terminal domain-like
APE_0490.1	SSF53271	PRTase-like
APE_0492.1	SSF55469	FMN-dependent nitroreductase-like
APE_0493.1	SSF100950	NagB/RpiA/CoA transferase-like
APE_0496.1	SSF53098	Ribonuclease H-like
APE_0500.1	SSF56281	Metallo-hydrolase/oxidoreductase
APE_0502	SSF75217	alpha/beta knot
APE_0505	SSF158997	Trm112p-like
APE_0507.1	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
APE_0508.1	SSF57783	Zinc beta-ribbon
APE_0510.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0511.1	SSF52913	RNA 3'-terminal phosphate cyclase, RPTC, insert domain
APE_0511.1	SSF55205	EPT/RTPC-like
APE_0513.1	SSF52374	Nucleotidylyl transferase
APE_0514	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_0517	SSF54534	FKBP-like
APE_0519.1	SSF56796	Dehydroquinate synthase-like
APE_0521.1	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
APE_0522.1	SSF56281	Metallo-hydrolase/oxidoreductase
APE_0525.1	SSF88697	PUA domain-like
APE_0525.1	SSF88802	Pre-PUA domain
APE_0525a	SSF50182	Sm-like ribonucleoproteins
APE_0525b	SSF57829	Zn-binding ribosomal proteins
APE_0526.1	SSF53092	Creatinase/prolidase N-terminal domain
APE_0526.1	SSF55920	Creatinase/aminopeptidase
APE_0528	SSF141130	Acetamidase/Formamidase-like
APE_0531.1	SSF53807	"Helical backbone" metal receptor
APE_0532.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0534.1	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
APE_0535	SSF47598	Ribbon-helix-helix
APE_0535	SSF55021	ACT-like
APE_0537.1	SSF52402	Adenine nucleotide alpha hydrolases-like
APE_0540.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0540.1	SSF53795	PEP carboxykinase-like
APE_0543	SSF103473	MFS general substrate transporter
APE_0545.1	SSF53271	PRTase-like
APE_0546.1	SSF55120	Pseudouridine synthase
APE_0546a	SSF50104	Translation proteins SH3-like domain
APE_0549.1	SSF47819	HRDC-like
APE_0550	SSF160975	AF1531-like
APE_0553	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_0554.1	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_0555.1	SSF75217	alpha/beta knot
APE_0557	SSF143437	THUMP domain-like
APE_0557	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_0558.1	SSF53822	Periplasmic binding protein-like I
APE_0562.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_0562a	SSF48600	Chorismate mutase II
APE_0564	SSF103263	Chorismate synthase, AroC
APE_0569	SSF55205	EPT/RTPC-like
APE_0572	SSF54211	Ribosomal protein S5 domain 2-like
APE_0574.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_0574.1	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
APE_0577	SSF51569	Aldolase
APE_0579	SSF56796	Dehydroquinate synthase-like
APE_0581.1	SSF51569	Aldolase
APE_0583	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APE_0583	SSF52922	TK C-terminal domain-like
APE_0586.1	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APE_0588.1	SSF48208	Six-hairpin glycosidases
APE_0591.1	SSF52096	ClpP/crotonase
APE_0594a.1	SSF46785	"Winged helix" DNA-binding domain
APE_0595.1	SSF51905	FAD/NAD(P)-binding domain
APE_0600	SSF55811	Nudix
APE_0601	SSF56784	HAD-like
APE_0603	SSF54285	MoaD/ThiS
APE_0603	SSF54690	Molybdopterin synthase subunit MoaE
APE_0605.1	SSF53300	vWA-like
APE_0607	SSF52743	Subtilisin-like
APE_0620.1	SSF49464	Carboxypeptidase regulatory domain-like
APE_0620.1	SSF50998	Quinoprotein alcohol dehydrogenase-like
APE_0620a	SSF101386	all-alpha NTP pyrophosphatases
APE_0621.1	SSF51395	FMN-linked oxidoreductases
APE_0623.1	SSF57783	Zinc beta-ribbon
APE_0624.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_0624.1	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
APE_0632.1	SSF53187	Zn-dependent exopeptidases
APE_0632.1	SSF55031	Bacterial exopeptidase dimerisation domain
APE_0636	SSF56281	Metallo-hydrolase/oxidoreductase
APE_0639.1	SSF56276	S-adenosylmethionine decarboxylase
APE_0640	SSF53167	Purine and uridine phosphorylases
APE_0641	SSF52833	Thioredoxin-like
APE_0644.1	SSF102114	Radical SAM enzymes
APE_0650.1	SSF51621	Phosphoenolpyruvate/pyruvate domain
APE_0650.1	SSF52009	Phosphohistidine domain
APE_0650.1	SSF56059	Glutathione synthetase ATP-binding domain-like
APE_0656a	SSF54909	Dimeric alpha+beta barrel
APE_0662.1	SSF52954	Class II aaRS ABD-related
APE_0662.1	SSF55681	Class II aaRS and biotin synthetases
APE_0665	SSF100950	NagB/RpiA/CoA transferase-like
APE_0665	SSF75445	D-ribose-5-phosphate isomerase (RpiA), lid domain
APE_0667	SSF140914	PriB N-terminal domain-like
APE_0669.1	SSF48613	Heme oxygenase-like
APE_0671	SSF103473	MFS general substrate transporter
APE_0672.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_0672.1	SSF56327	LDH C-terminal domain-like
APE_0674.1	SSF53383	PLP-dependent transferases
APE_0675.1	SSF50249	Nucleic acid-binding proteins
APE_0676	SSF51621	Phosphoenolpyruvate/pyruvate domain
APE_0677.1	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
APE_0680.1	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
APE_0680a.1	SSF160363	MTH889-like
APE_0681.1	SSF102712	JAB1/MPN domain
APE_0682.1	SSF56300	Metallo-dependent phosphatases
APE_0683	SSF56784	HAD-like
APE_0685	SSF53032	tRNA-intron endonuclease catalytic domain-like
APE_0686	SSF100950	NagB/RpiA/CoA transferase-like
APE_0688	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
APE_0689.1	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
APE_0695.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0698.1	SSF52467	DHS-like NAD/FAD-binding domain
APE_0702.1	SSF110849	ParB/Sulfiredoxin
APE_0703.1	SSF56726	DNA topoisomerase IV, alpha subunit
APE_0706.1	SSF46946	S13-like H2TH domain
APE_0706.1	SSF54211	Ribosomal protein S5 domain 2-like
APE_0706.1	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
APE_0708.1	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
APE_0708.1	SSF56003	Molybdenum cofactor-binding domain
APE_0710.1	SSF48150	DNA-glycosylase
APE_0712.1	SSF51604	Enolase C-terminal domain-like
APE_0712.1	SSF54826	Enolase N-terminal domain-like
APE_0720a	SSF46785	"Winged helix" DNA-binding domain
APE_0722	SSF46785	"Winged helix" DNA-binding domain
APE_0722a	SSF46785	"Winged helix" DNA-binding domain
APE_0739	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
APE_0739	SSF56645	Acyl-CoA dehydrogenase NM domain-like
APE_0741	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
APE_0741	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
APE_0745.1	SSF51294	Hedgehog/intein (Hint) domain
APE_0745.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0745.1	SSF55608	Homing endonucleases
APE_0748a	SSF50249	Nucleic acid-binding proteins
APE_0751	SSF56112	Protein kinase-like (PK-like)
APE_0754.1	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
APE_0756.1	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
APE_0756.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_0759.1	SSF51905	FAD/NAD(P)-binding domain
APE_0760.1	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
APE_0761.1	SSF81301	Nucleotidyltransferase
APE_0763.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_0766	SSF56784	HAD-like
APE_0767.1	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_0768.1	SSF53697	SIS domain
APE_0772	SSF69695	SRP19
APE_0775	SSF52833	Thioredoxin-like
APE_0777	SSF56300	Metallo-dependent phosphatases
APE_0778	SSF47413	lambda repressor-like DNA-binding domains
APE_0781.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0782.1	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_0784.1	SSF46785	"Winged helix" DNA-binding domain
APE_0785.1	SSF54631	CBS-domain pair
APE_0786.1	SSF50447	Translation proteins
APE_0787.1	SSF47954	Cyclin-like
APE_0788.1	SSF52972	ITPase-like
APE_0790	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
APE_0791.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0792.1	SSF49503	Cupredoxins
APE_0793.1	SSF81442	Cytochrome c oxidase subunit I-like
APE_0793.1	SSF81452	Cytochrome c oxidase subunit III-like
APE_0796.1	SSF52833	Thioredoxin-like
APE_0797	SSF75217	alpha/beta knot
APE_0800.1	SSF51905	FAD/NAD(P)-binding domain
APE_0801.1	SSF64167	SurE-like
APE_0803.1	SSF51717	Dihydropteroate synthetase-like
APE_0805	SSF56349	DNA breaking-rejoining enzymes
APE_0807.1	SSF53720	ALDH-like
APE_0809.1	SSF52954	Class II aaRS ABD-related
APE_0809.1	SSF55681	Class II aaRS and biotin synthetases
APE_0812	SSF48150	DNA-glycosylase
APE_0815.1	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_0816	SSF111278	SSo0622-like
APE_0818.1	SSF56349	DNA breaking-rejoining enzymes
APE_0821	SSF46785	"Winged helix" DNA-binding domain
APE_0833.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0843.1	SSF48208	Six-hairpin glycosidases
APE_0859	SSF50494	Trypsin-like serine proteases
APE_0872.1	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_0875.1	SSF48150	DNA-glycosylase
APE_0880	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0880a	SSF46785	"Winged helix" DNA-binding domain
APE_0880b	SSF46785	"Winged helix" DNA-binding domain
APE_0887.1	SSF56784	HAD-like
APE_0892.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0900.1	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APE_0903.1	SSF50447	Translation proteins
APE_0903.1	SSF55186	ThrRS/AlaRS common domain
APE_0907.1	SSF48592	GroEL equatorial domain-like
APE_0907.1	SSF52029	GroEL apical domain-like
APE_0907.1	SSF54849	GroEL-intermediate domain like
APE_0912	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_0914	SSF63562	RPB6/omega subunit-like
APE_0916.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_0917	SSF53822	Periplasmic binding protein-like I
APE_0919	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0921	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0929.1	SSF53901	Thiolase-like
APE_0930.1	SSF50249	Nucleic acid-binding proteins
APE_0931	SSF53790	Tetrapyrrole methylase
APE_0932.1	SSF102114	Radical SAM enzymes
APE_0935	SSF51971	Nucleotide-binding domain
APE_0938.1	SSF56112	Protein kinase-like (PK-like)
APE_0941	SSF161098	MetI-like
APE_0943	SSF161098	MetI-like
APE_0944.1	SSF50331	MOP-like
APE_0944.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0945.1	SSF53850	Periplasmic binding protein-like II
APE_0946	SSF46548	alpha-helical ferredoxin
APE_0946	SSF54292	2Fe-2S ferredoxin-like
APE_0947	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
APE_0948.1	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
APE_0950.1	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
APE_0950.1	SSF51905	FAD/NAD(P)-binding domain
APE_0950.1	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
APE_0951.1	SSF51230	Single hybrid motif
APE_0952.1	SSF51366	Ribulose-phoshate binding barrel
APE_0954	SSF102215	Creatininase
APE_0955	SSF81324	Voltage-gated potassium channels
APE_0957a	SSF50182	Sm-like ribonucleoproteins
APE_0959	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
APE_0960	SSF116846	MIT domain
APE_0960	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0962	SSF46785	"Winged helix" DNA-binding domain
APE_0964.1	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_0965.1	SSF103481	Multidrug resistance efflux transporter EmrE
APE_0966.1	SSF56300	Metallo-dependent phosphatases
APE_0973b	SSF47598	Ribbon-helix-helix
APE_0974.1	SSF46785	"Winged helix" DNA-binding domain
APE_0974.1	SSF54631	CBS-domain pair
APE_0976.1	SSF50104	Translation proteins SH3-like domain
APE_0978.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0979.1	SSF75304	Amidase signature (AS) enzymes
APE_0981.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_0983.1	SSF103491	Preprotein translocase SecY subunit
APE_0986.1	SSF55821	YrdC/RibB
APE_0988	SSF52121	Lumazine synthase
APE_0993.1	SSF53167	Purine and uridine phosphorylases
APE_0996.1	SSF82544	GckA/TtuD-like
APE_1003.1	SSF53187	Zn-dependent exopeptidases
APE_1007a	SSF57783	Zinc beta-ribbon
APE_1011.1	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_1014.1	SSF51556	Metallo-dependent hydrolases
APE_1015	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
APE_1015	SSF50677	ValRS/IleRS/LeuRS editing domain
APE_1015	SSF52374	Nucleotidylyl transferase
APE_1023.1	SSF51569	Aldolase
APE_1026.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1031.1	SSF53300	vWA-like
APE_1035.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1038.1	SSF53927	Cytidine deaminase-like
APE_1043.1	SSF51905	FAD/NAD(P)-binding domain
APE_1044	SSF55469	FMN-dependent nitroreductase-like
APE_1047.1	SSF100950	NagB/RpiA/CoA transferase-like
APE_1049.1	SSF53807	"Helical backbone" metal receptor
APE_1049.1	SSF57997	Tropomyosin
APE_1053.1	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
APE_1055.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1056.1	SSF143447	AMMECR1-like
APE_1059	SSF102114	Radical SAM enzymes
APE_1061.1	SSF51905	FAD/NAD(P)-binding domain
APE_1065.1	SSF52210	Succinyl-CoA synthetase domains
APE_1065.1	SSF56059	Glutathione synthetase ATP-binding domain-like
APE_1072.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_1072.1	SSF52210	Succinyl-CoA synthetase domains
APE_1073	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1080.1	SSF53271	PRTase-like
APE_1081.1	SSF47364	Domain of the SRP/SRP receptor G-proteins
APE_1081.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1084.1	SSF46579	Prefoldin
APE_1084a	SSF160374	RplX-like
APE_1085	SSF55909	Pentein
APE_1087.1	SSF54575	Ribosomal protein L31e
APE_1087a	SSF48662	Ribosomal protein L39e
APE_1087b	SSF46950	Double-stranded DNA-binding domain
APE_1090	SSF46785	"Winged helix" DNA-binding domain
APE_1091	SSF75471	YhbY-like
APE_1094.1	SSF117018	ATP-dependent DNA ligase DNA-binding domain
APE_1094.1	SSF50249	Nucleic acid-binding proteins
APE_1094.1	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
APE_1098	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_1098	SSF88697	PUA domain-like
APE_1102	SSF88723	PIN domain-like
APE_1104.1	SSF111331	NAD kinase/diacylglycerol kinase-like
APE_1106.1	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_1109.1	SSF111249	Sulfolobus fructose-1,6-bisphosphatase-like
APE_1114.1	SSF46785	"Winged helix" DNA-binding domain
APE_1114.1	SSF55920	Creatinase/aminopeptidase
APE_1117	SSF56281	Metallo-hydrolase/oxidoreductase
APE_1119.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1119.1	SSF54862	4Fe-4S ferredoxins
APE_1129	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
APE_1129	SSF52374	Nucleotidylyl transferase
APE_1129	SSF57770	Methionyl-tRNA synthetase (MetRS), Zn-domain
APE_1132.1	SSF54189	Ribosomal proteins S24e, L23 and L15e
APE_1132a	SSF57829	Zn-binding ribosomal proteins
APE_1135	SSF53067	Actin-like ATPase domain
APE_1136.1	SSF56112	Protein kinase-like (PK-like)
APE_1138.1	SSF52972	ITPase-like
APE_1139	SSF47060	S15/NS1 RNA-binding domain
APE_1140.1	SSF53633	Carbamate kinase-like
APE_1140.1	SSF55021	ACT-like
APE_1143	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_1143	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
APE_1144.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_1144.1	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
APE_1156.1	SSF143437	THUMP domain-like
APE_1156.1	SSF75217	alpha/beta knot
APE_1158.1	SSF102114	Radical SAM enzymes
APE_1161.1	SSF160350	Rnp2-like
APE_1164	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1164	SSF81271	TGS-like
APE_1167.1	SSF109728	Hypothetical protein AF0491, middle domain
APE_1167.1	SSF54980	EF-G C-terminal domain-like
APE_1167.1	SSF89895	FYSH domain
APE_1169.1	SSF56300	Metallo-dependent phosphatases
APE_1178	SSF51182	RmlC-like cupins
APE_1179.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_1180	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_1181	SSF53448	Nucleotide-diphospho-sugar transferases
APE_1182	SSF53649	Alkaline phosphatase-like
APE_1183	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_1184	SSF53448	Nucleotide-diphospho-sugar transferases
APE_1186.1	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APE_1188	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APE_1189.1	SSF53448	Nucleotide-diphospho-sugar transferases
APE_1190.1	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_1191	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APE_1192	SSF53448	Nucleotide-diphospho-sugar transferases
APE_1195.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1197.1	SSF52374	Nucleotidylyl transferase
APE_1197.1	SSF88697	PUA domain-like
APE_1199	SSF53649	Alkaline phosphatase-like
APE_1202.1	SSF51161	Trimeric LpxA-like enzymes
APE_1202.1	SSF53448	Nucleotide-diphospho-sugar transferases
APE_1205.1	SSF53697	SIS domain
APE_1205.1	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
APE_1208.1	SSF53448	Nucleotide-diphospho-sugar transferases
APE_1209a	SSF56645	Acyl-CoA dehydrogenase NM domain-like
APE_1209b	SSF88723	PIN domain-like
APE_1209c.1	SSF141694	AF2212/PG0164-like
APE_1209e	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
APE_1209f	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
APE_1211.1	SSF46785	"Winged helix" DNA-binding domain
APE_1213.1	SSF52743	Subtilisin-like
APE_1213.1	SSF69318	Integrin alpha N-terminal domain
APE_1216	SSF57997	Tropomyosin
APE_1221	SSF57997	Tropomyosin
APE_1223.1	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
APE_1226	SSF53383	PLP-dependent transferases
APE_1232	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1237.1	SSF46785	"Winged helix" DNA-binding domain
APE_1239a	SSF143430	TTP0101/SSO1404-like
APE_1244.1	SSF53474	alpha/beta-Hydrolases
APE_1245.1	SSF50129	GroES-like
APE_1245.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_1253	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1255.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1260	SSF56281	Metallo-hydrolase/oxidoreductase
APE_1262	SSF161111	Cation efflux protein transmembrane domain-like
APE_1265.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_1265.1	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
APE_1267.1	SSF51905	FAD/NAD(P)-binding domain
APE_1270.1	SSF81301	Nucleotidyltransferase
APE_1272.1	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
APE_1273.1	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
APE_1273.1	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
APE_1275	SSF53383	PLP-dependent transferases
APE_1275b	SSF56300	Metallo-dependent phosphatases
APE_1279.1	SSF53597	Dihydrofolate reductase-like
APE_1281	SSF109604	HD-domain/PDEase-like
APE_1285.1	SSF52768	Arginase/deacetylase
APE_1288.1	SSF50692	ADC-like
APE_1288.1	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
APE_1294.1	SSF54862	4Fe-4S ferredoxins
APE_1300.1	SSF89155	TorD-like
APE_1301.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1303.1	SSF53822	Periplasmic binding protein-like I
APE_1307	SSF56801	Acetyl-CoA synthetase-like
APE_1308	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1310	SSF56801	Acetyl-CoA synthetase-like
APE_1317	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1323.1	SSF50249	Nucleic acid-binding proteins
APE_1324	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APE_1326.1	SSF102114	Radical SAM enzymes
APE_1328.1	SSF53067	Actin-like ATPase domain
APE_1333	SSF54909	Dimeric alpha+beta barrel
APE_1335.1	SSF101821	Aminopeptidase/glucanase lid domain
APE_1335.1	SSF53187	Zn-dependent exopeptidases
APE_1336.1	SSF51905	FAD/NAD(P)-binding domain
APE_1340.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1340.1	SSF56712	Prokaryotic type I DNA topoisomerase
APE_1343	SSF56317	Carbon-nitrogen hydrolase
APE_1345	SSF103481	Multidrug resistance efflux transporter EmrE
APE_1346.1	SSF56801	Acetyl-CoA synthetase-like
APE_1350.1	SSF55040	Molybdenum cofactor biosynthesis protein C, MoaC
APE_1353.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1360.1	SSF46785	"Winged helix" DNA-binding domain
APE_1361.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_1366.1	SSF52121	Lumazine synthase
APE_1367	SSF50692	ADC-like
APE_1367	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1367	SSF54585	Cdc48 domain 2-like
APE_1376.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1376.1	SSF56712	Prokaryotic type I DNA topoisomerase
APE_1380.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1385	SSF64005	Undecaprenyl diphosphate synthase
APE_1386.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_1386.1	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
APE_1388.1	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
APE_1390.1	SSF53850	Periplasmic binding protein-like II
APE_1395.1	SSF161098	MetI-like
APE_1396	SSF161098	MetI-like
APE_1399	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1402.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1404.1	SSF55205	EPT/RTPC-like
APE_1407.1	SSF144020	FdhE-like
APE_1419.1	SSF54862	4Fe-4S ferredoxins
APE_1422	SSF56762	HydB/Nqo4-like
APE_1426	SSF143243	Nqo5-like
APE_1428.1	SSF56770	HydA/Nqo6-like
APE_1432	SSF50447	Translation proteins
APE_1432	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1432	SSF54211	Ribosomal protein S5 domain 2-like
APE_1432	SSF54980	EF-G C-terminal domain-like
APE_1436.1	SSF47781	RuvA domain 2-like
APE_1436.1	SSF52980	Restriction endonuclease-like
APE_1437.1	SSF64182	DHH phosphoesterases
APE_1440	SSF46579	Prefoldin
APE_1441.1	SSF50182	Sm-like ribonucleoproteins
APE_1441.1	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
APE_1441.1	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
APE_1443.1	SSF52954	Class II aaRS ABD-related
APE_1443a	SSF57829	Zn-binding ribosomal proteins
APE_1445	SSF54211	Ribosomal protein S5 domain 2-like
APE_1445	SSF55666	Ribonuclease PH domain 2-like
APE_1447	SSF54211	Ribosomal protein S5 domain 2-like
APE_1447	SSF55666	Ribonuclease PH domain 2-like
APE_1448	SSF50249	Nucleic acid-binding proteins
APE_1448	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
APE_1449	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
APE_1450.1	SSF89550	PHP domain-like
APE_1451.1	SSF55282	RL5-like
APE_1452	SSF54189	Ribosomal proteins S24e, L23 and L15e
APE_1454.1	SSF55008	HMA, heavy metal-associated domain
APE_1454.1	SSF56784	HAD-like
APE_1454.1	SSF81653	Calcium ATPase, transduction domain A
APE_1454.1	SSF81665	Calcium ATPase, transmembrane domain M
APE_1457	SSF47240	Ferritin-like
APE_1458	SSF51905	FAD/NAD(P)-binding domain
APE_1458	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
APE_1458a	SSF46785	"Winged helix" DNA-binding domain
APE_1458a	SSF54909	Dimeric alpha+beta barrel
APE_1461.1	SSF53633	Carbamate kinase-like
APE_1462	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_1462	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
APE_1462a	SSF57783	Zinc beta-ribbon
APE_1463	SSF52440	PreATP-grasp domain
APE_1463	SSF56059	Glutathione synthetase ATP-binding domain-like
APE_1464	SSF53383	PLP-dependent transferases
APE_1467.1	SSF53187	Zn-dependent exopeptidases
APE_1467.1	SSF55031	Bacterial exopeptidase dimerisation domain
APE_1470.1	SSF52402	Adenine nucleotide alpha hydrolases-like
APE_1471.1	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
APE_1472	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APE_1473.1	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APE_1473.1	SSF52922	TK C-terminal domain-like
APE_1473.1	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
APE_1481.1	SSF55811	Nudix
APE_1483.1	SSF142535	AF0625-like
APE_1484.1	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
APE_1484.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_1484.1	SSF52096	ClpP/crotonase
APE_1488.1	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
APE_1491.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_1491.1	SSF75615	Siroheme synthase middle domains-like
APE_1493	SSF69618	HemD-like
APE_1495.1	SSF51430	NAD(P)-linked oxidoreductase
APE_1495a	SSF47598	Ribbon-helix-helix
APE_1497.1	SSF46785	"Winged helix" DNA-binding domain
APE_1498.1	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
APE_1498.1	SSF55021	ACT-like
APE_1501.1	SSF55298	YjgF-like
APE_1503.1	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_1505.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1507.1	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
APE_1509.1	SSF117856	AF0104/ALDC/Ptd012-like
APE_1510.1	SSF54631	CBS-domain pair
APE_1512	SSF54211	Ribosomal protein S5 domain 2-like
APE_1514.1	SSF53448	Nucleotide-diphospho-sugar transferases
APE_1517	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_1517	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
APE_1520.1	SSF111038	YjbQ-like
APE_1522.1	SSF48019	post-AAA+ oligomerization domain-like
APE_1522.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1524.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1528.1	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APE_1530.1	SSF102114	Radical SAM enzymes
APE_1533.1	SSF100966	Translation initiation factor 2 beta, aIF2beta, N-terminal domain
APE_1533.1	SSF75689	Zinc-binding domain of translation initiation factor 2 beta
APE_1534	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APE_1535.1	SSF102114	Radical SAM enzymes
APE_1538.1	SSF51351	Triosephosphate isomerase (TIM)
APE_1543	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1543	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APE_1547.1	SSF50993	Peptidase/esterase 'gauge' domain
APE_1547.1	SSF53474	alpha/beta-Hydrolases
APE_1548.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1552	SSF54631	CBS-domain pair
APE_1552	SSF81340	Clc chloride channel
APE_1555.1	SSF81340	Clc chloride channel
APE_1557.1	SSF50129	GroES-like
APE_1557.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_1558b	SSF143011	RelE-like
APE_1559.1	SSF56281	Metallo-hydrolase/oxidoreductase
APE_1564.1	SSF88723	PIN domain-like
APE_1567.1	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
APE_1568.1	SSF75169	DsrEFH-like
APE_1571.1	SSF143968	UbiD C-terminal domain-like
APE_1571.1	SSF50475	FMN-binding split barrel
APE_1576	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1578	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1581.1	SSF161098	MetI-like
APE_1582	SSF161098	MetI-like
APE_1583.1	SSF53850	Periplasmic binding protein-like II
APE_1585	SSF54631	CBS-domain pair
APE_1586	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
APE_1586a	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
APE_1586b	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
APE_1588	SSF88723	PIN domain-like
APE_1588a	SSF56059	Glutathione synthetase ATP-binding domain-like
APE_1588b	SSF56059	Glutathione synthetase ATP-binding domain-like
APE_1591.1	SSF54975	Acylphosphatase/BLUF domain-like
APE_1592.1	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
APE_1592.1	SSF52374	Nucleotidylyl transferase
APE_1594	SSF69572	Activating enzymes of the ubiquitin-like proteins
APE_1602.1	SSF46785	"Winged helix" DNA-binding domain
APE_1602.1	SSF56112	Protein kinase-like (PK-like)
APE_1602a	SSF46785	"Winged helix" DNA-binding domain
APE_1604	SSF52317	Class I glutamine amidotransferase-like
APE_1604	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1605.1	SSF56784	HAD-like
APE_1614	SSF117916	Fe-S cluster assembly (FSCA) domain-like
APE_1615	SSF161111	Cation efflux protein transmembrane domain-like
APE_1616.1	SSF53649	Alkaline phosphatase-like
APE_1618.1	SSF52016	LeuD/IlvD-like
APE_1618.1	SSF53732	Aconitase iron-sulfur domain
APE_1622.1	SSF51905	FAD/NAD(P)-binding domain
APE_1623	SSF81442	Cytochrome c oxidase subunit I-like
APE_1627	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APE_1629	SSF55159	eIF1-like
APE_1629a.1	SSF63393	RNA polymerase subunits
APE_1630.1	SSF53850	Periplasmic binding protein-like II
APE_1632	SSF161098	MetI-like
APE_1633	SSF161098	MetI-like
APE_1635.1	SSF50331	MOP-like
APE_1635.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1637.1	SSF52768	Arginase/deacetylase
APE_1639	SSF52954	Class II aaRS ABD-related
APE_1639	SSF55681	Class II aaRS and biotin synthetases
APE_1646.1	SSF53032	tRNA-intron endonuclease catalytic domain-like
APE_1646.1	SSF55267	tRNA-intron endonuclease N-terminal domain-like
APE_1647	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
APE_1648.1	SSF52949	Macro domain-like
APE_1649.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1652	SSF102114	Radical SAM enzymes
APE_1655	SSF102114	Radical SAM enzymes
APE_1657.1	SSF53639	AraD/HMP-PK domain-like
APE_1659	SSF51430	NAD(P)-linked oxidoreductase
APE_1660.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_1661	SSF102462	Peptidyl-tRNA hydrolase II
APE_1662.1	SSF54893	Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
APE_1662.1	SSF57825	Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
APE_1663.1	SSF53671	Aspartate/ornithine carbamoyltransferase
APE_1666	SSF109604	HD-domain/PDEase-like
APE_1668	SSF54913	GlnB-like
APE_1669.1	SSF51905	FAD/NAD(P)-binding domain
APE_1669.1	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
APE_1671	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
APE_1671	SSF51230	Single hybrid motif
APE_1671	SSF52777	CoA-dependent acyltransferases
APE_1674	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APE_1674	SSF52922	TK C-terminal domain-like
APE_1677.1	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APE_1681.1	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
APE_1681.1	SSF56645	Acyl-CoA dehydrogenase NM domain-like
APE_1683.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1686.1	SSF52242	Cobalamin (vitamin B12)-binding domain
APE_1687	SSF51703	Cobalamin (vitamin B12)-dependent enzymes
APE_1688.1	SSF53807	"Helical backbone" metal receptor
APE_1690.1	SSF140663	TTHA0068-like
APE_1692.1	SSF50324	Inorganic pyrophosphatase
APE_1695.1	SSF101790	Aminomethyltransferase beta-barrel domain
APE_1695.1	SSF103025	Folate-binding domain
APE_1702	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1703	SSF101960	Stabilizer of iron transporter SufD
APE_1706	SSF101960	Stabilizer of iron transporter SufD
APE_1708	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
APE_1711	SSF46785	"Winged helix" DNA-binding domain
APE_1713	SSF48256	Citrate synthase
APE_1717.1	SSF75304	Amidase signature (AS) enzymes
APE_1718	SSF55931	Glutamine synthetase/guanido kinase
APE_1718	SSF89095	GatB/YqeY motif
APE_1719.1	SSF46626	Cytochrome c
APE_1720	SSF49503	Cupredoxins
APE_1721	SSF52833	Thioredoxin-like
APE_1722	SSF52833	Thioredoxin-like
APE_1722a	SSF110087	DR1885-like metal-binding protein
APE_1723.1	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_1724.1	SSF50022	ISP domain
APE_1725	SSF81342	Transmembrane di-heme cytochromes
APE_1725	SSF81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
APE_1728	SSF53850	Periplasmic binding protein-like II
APE_1730.1	SSF161098	MetI-like
APE_1732	SSF50331	MOP-like
APE_1732	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1734.1	SSF75217	alpha/beta knot
APE_1735	SSF47446	Signal peptide-binding domain
APE_1735	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1737.1	SSF46946	S13-like H2TH domain
APE_1739.1	SSF55174	Alpha-L RNA-binding motif
APE_1742.1	SSF53137	Translational machinery components
APE_1744.1	SSF55257	RBP11-like subunits of RNA polymerase
APE_1744.1	SSF56553	Insert subdomain of RNA polymerase alpha subunit
APE_1746	SSF52080	Ribosomal proteins L15p and L18e
APE_1747	SSF52161	Ribosomal protein L13
APE_1749	SSF54211	Ribosomal protein S5 domain 2-like
APE_1749a	SSF46924	RNA polymerase subunit RPB10
APE_1750	SSF52313	Ribosomal protein S2
APE_1751	SSF55282	RL5-like
APE_1753.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1754.1	SSF53383	PLP-dependent transferases
APE_1756	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
APE_1756	SSF52374	Nucleotidylyl transferase
APE_1756	SSF55190	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
APE_1758.1	SSF103365	Hypothetical protein PH1602
APE_1761.1	SSF55154	CYTH-like phosphatases
APE_1764.1	SSF48576	Terpenoid synthases
APE_1765.1	SSF51395	FMN-linked oxidoreductases
APE_1768.1	SSF53633	Carbamate kinase-like
APE_1771	SSF53213	LigB-like
APE_1775.1	SSF55486	Metalloproteases ("zincins"), catalytic domain
APE_1779.1	SSF88697	PUA domain-like
APE_1782.1	SSF52467	DHS-like NAD/FAD-binding domain
APE_1786.1	SSF53720	ALDH-like
APE_1790.1	SSF56112	Protein kinase-like (PK-like)
APE_1791.1	SSF55003	PAP/Archaeal CCA-adding enzyme, C-terminal domain
APE_1791.1	SSF81301	Nucleotidyltransferase
APE_1791.1	SSF81631	PAP/OAS1 substrate-binding domain
APE_1792	SSF55144	LigT-like
APE_1794	SSF56712	Prokaryotic type I DNA topoisomerase
APE_1796.1	SSF51306	LexA/Signal peptidase
APE_1797	SSF56037	PheT/TilS domain
APE_1798.1	SSF56655	Carbohydrate phosphatase
APE_1799a	SSF54909	Dimeric alpha+beta barrel
APE_1800.1	SSF159065	Dom34/Pelota N-terminal domain-like
APE_1800.1	SSF53137	Translational machinery components
APE_1800.1	SSF55315	L30e-like
APE_1805.1	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
APE_1805.1	SSF50677	ValRS/IleRS/LeuRS editing domain
APE_1805.1	SSF52374	Nucleotidylyl transferase
APE_1814.1	SSF47240	Ferritin-like
APE_1816.1	SSF48557	L-aspartase-like
APE_1818	SSF55315	L30e-like
APE_1819	SSF55120	Pseudouridine synthase
APE_1820	SSF51905	FAD/NAD(P)-binding domain
APE_1823	SSF82704	AlbA-like
APE_1825.1	SSF111331	NAD kinase/diacylglycerol kinase-like
APE_1829	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1831.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_1831.1	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
APE_1832	SSF53474	alpha/beta-Hydrolases
APE_1832	SSF82171	DPP6 N-terminal domain-like
APE_1832a.1	SSF82704	AlbA-like
APE_1834.1	SSF53271	PRTase-like
APE_1835	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_1836.1	SSF56281	Metallo-hydrolase/oxidoreductase
APE_1838.1	SSF54631	CBS-domain pair
APE_1842	SSF54999	Ribosomal protein S10
APE_1844	SSF50447	Translation proteins
APE_1844	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
APE_1844	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1846.1	SSF47973	Ribosomal protein S7
APE_1848.1	SSF103256	Hypothetical protein TM0160
APE_1849	SSF50249	Nucleic acid-binding proteins
APE_1850	SSF54814	Prokaryotic type KH domain (KH-domain type II)
APE_1851.1	SSF55315	L30e-like
APE_1852.1	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
APE_1853.1	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
APE_1856	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
APE_1856a	SSF55287	RPB5-like RNA polymerase subunit
APE_1861.1	SSF56300	Metallo-dependent phosphatases
APE_1862.1	SSF55945	TATA-box binding protein-like
APE_1865.1	SSF102114	Radical SAM enzymes
APE_1867.1	SSF50182	Sm-like ribonucleoproteins
APE_1867.1	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
APE_1867.1	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
APE_1869	SSF55035	NAD-binding domain of HMG-CoA reductase
APE_1869	SSF56542	Substrate-binding domain of HMG-CoA reductase
APE_1871.1	SSF50249	Nucleic acid-binding proteins
APE_1872.1	SSF53901	Thiolase-like
APE_1873.1	SSF53901	Thiolase-like
APE_1874.1	SSF102114	Radical SAM enzymes
APE_1877.1	SSF144091	Rhomboid-like
APE_1882.1	SSF50939	Sialidases
APE_1885	SSF53167	Purine and uridine phosphorylases
APE_1887.1	SSF53743	FucI/AraA N-terminal and middle domains
APE_1889	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_1891.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1892	SSF161098	MetI-like
APE_1893.1	SSF53850	Periplasmic binding protein-like II
APE_1894	SSF55021	ACT-like
APE_1896.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1898	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1911.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1914.1	SSF103473	MFS general substrate transporter
APE_1917	SSF53187	Zn-dependent exopeptidases
APE_1921	SSF55608	Homing endonucleases
APE_1929.1	SSF55608	Homing endonucleases
APE_1934.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1940.1	SSF53697	SIS domain
APE_1950.1	SSF49764	HSP20-like chaperones
APE_1952.1	SSF51905	FAD/NAD(P)-binding domain
APE_1954	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APE_1958.1	SSF52402	Adenine nucleotide alpha hydrolases-like
APE_1959.1	SSF102645	CoaB-like
APE_1959.1	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
APE_1961	SSF51430	NAD(P)-linked oxidoreductase
APE_1962.1	SSF53383	PLP-dependent transferases
APE_1963.1	SSF56796	Dehydroquinate synthase-like
APE_1964.1	SSF55718	SCP-like
APE_1968	SSF53633	Carbamate kinase-like
APE_1971.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_1976.1	SSF46589	tRNA-binding arm
APE_1976.1	SSF55681	Class II aaRS and biotin synthetases
APE_1979.1	SSF117916	Fe-S cluster assembly (FSCA) domain-like
APE_1980.1	SSF53218	Molybdenum cofactor biosynthesis proteins
APE_1984.1	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APE_1986.1	SSF52374	Nucleotidylyl transferase
APE_1988.1	SSF53137	Translational machinery components
APE_1988.1	SSF55315	L30e-like
APE_1988.1	SSF55481	N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
APE_1992.1	SSF53671	Aspartate/ornithine carbamoyltransferase
APE_1995.1	SSF46785	"Winged helix" DNA-binding domain
APE_1996.1	SSF46785	"Winged helix" DNA-binding domain
APE_1999	SSF109755	PhoU-like
APE_1999	SSF116726	TrkA C-terminal domain-like
APE_2002	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_2004.1	SSF46785	"Winged helix" DNA-binding domain
APE_2004.1	SSF57783	Zinc beta-ribbon
APE_2006.1	SSF75217	alpha/beta knot
APE_2007	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2011.1	SSF47413	lambda repressor-like DNA-binding domains
APE_2012	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2017	SSF51713	tRNA-guanine transglycosylase
APE_2018.1	SSF159659	Cgl1923-like
APE_2020	SSF88697	PUA domain-like
APE_2020	SSF88802	Pre-PUA domain
APE_2021.1	SSF46785	"Winged helix" DNA-binding domain
APE_2023	SSF53383	PLP-dependent transferases
APE_2029.1	SSF52733	Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
APE_2032.1	SSF101307	YutG-like
APE_2034.1	SSF53448	Nucleotide-diphospho-sugar transferases
APE_2035.1	SSF53383	PLP-dependent transferases
APE_2041.1	SSF52402	Adenine nucleotide alpha hydrolases-like
APE_2042.1	SSF52402	Adenine nucleotide alpha hydrolases-like
APE_2044.1	SSF55326	PurM N-terminal domain-like
APE_2044.1	SSF56042	PurM C-terminal domain-like
APE_2048	SSF51726	UROD/MetE-like
APE_2050.1	SSF51726	UROD/MetE-like
APE_2052.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2052.1	SSF81271	TGS-like
APE_2055.1	SSF56317	Carbon-nitrogen hydrolase
APE_2056.1	SSF55811	Nudix
APE_2057.1	SSF46785	"Winged helix" DNA-binding domain
APE_2060.1	SSF50331	MOP-like
APE_2060.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2062.1	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
APE_2062.1	SSF51998	PFL-like glycyl radical enzymes
APE_2064.1	SSF69796	Thymidylate synthase-complementing protein Thy1
APE_2066.1	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APE_2067.1	SSF54211	Ribosomal protein S5 domain 2-like
APE_2067.1	SSF55060	GHMP Kinase, C-terminal domain
APE_2068	SSF53383	PLP-dependent transferases
APE_2071.1	SSF53271	PRTase-like
APE_2071a	SSF116820	Rps17e-like
APE_2072.1	SSF48592	GroEL equatorial domain-like
APE_2072.1	SSF52029	GroEL apical domain-like
APE_2072.1	SSF54849	GroEL-intermediate domain like
APE_2074.1	SSF52374	Nucleotidylyl transferase
APE_2075	SSF52402	Adenine nucleotide alpha hydrolases-like
APE_2078	SSF143968	UbiD C-terminal domain-like
APE_2078	SSF50475	FMN-binding split barrel
APE_2080.1	SSF55811	Nudix
APE_2081.1	SSF144052	Thermophilic metalloprotease-like
APE_2084.1	SSF109755	PhoU-like
APE_2085.1	SSF50104	Translation proteins SH3-like domain
APE_2085.1	SSF50249	Nucleic acid-binding proteins
APE_2086	SSF52402	Adenine nucleotide alpha hydrolases-like
APE_2086a	SSF54285	MoaD/ThiS
APE_2089	SSF52016	LeuD/IlvD-like
APE_2090	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2091.1	SSF53067	Actin-like ATPase domain
APE_2093	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2094.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2096.1	SSF110455	Toprim domain
APE_2098.1	SSF53098	Ribonuclease H-like
APE_2098.1	SSF56672	DNA/RNA polymerases
APE_2104.1	SSF51658	Xylose isomerase-like
APE_2105.1	SSF53167	Purine and uridine phosphorylases
APE_2106.1	SSF53613	Ribokinase-like
APE_2108	SSF53901	Thiolase-like
APE_2109	SSF102114	Radical SAM enzymes
APE_2112.1	SSF82114	Riboflavin kinase-like
APE_2115.1	SSF51556	Metallo-dependent hydrolases
APE_2121.1	SSF53383	PLP-dependent transferases
APE_2124.1	SSF53383	PLP-dependent transferases
APE_2125.1	SSF52833	Thioredoxin-like
APE_2126.1	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APE_2126.1	SSF52922	TK C-terminal domain-like
APE_2126.1	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
APE_2128	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APE_2130.1	SSF53383	PLP-dependent transferases
APE_2136.1	SSF53850	Periplasmic binding protein-like II
APE_2139.1	SSF51219	TRAP-like
APE_2142.1	SSF54368	Glutamine synthetase, N-terminal domain
APE_2142.1	SSF55931	Glutamine synthetase/guanido kinase
APE_2144.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2147.1	SSF103378	2-methylcitrate dehydratase PrpD
APE_2149.1	SSF51905	FAD/NAD(P)-binding domain
APE_2151.1	SSF141322	NfeD domain-like
APE_2151.1	SSF52096	ClpP/crotonase
APE_2153.1	SSF117892	Band 7/SPFH domain
APE_2154b	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2156.1	SSF56281	Metallo-hydrolase/oxidoreductase
APE_2158.1	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
APE_2158.1	SSF56645	Acyl-CoA dehydrogenase NM domain-like
APE_2161	SSF51556	Metallo-dependent hydrolases
APE_2164.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2165	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2166	SSF101353	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
APE_2166	SSF50447	Translation proteins
APE_2166	SSF55186	ThrRS/AlaRS common domain
APE_2166	SSF55681	Class II aaRS and biotin synthetases
APE_2171.1	SSF160369	Ribosomal protein L10-like
APE_2173.1	SSF56808	Ribosomal protein L1
APE_2174	SSF46906	Ribosomal protein L11, C-terminal domain
APE_2176.1	SSF50104	Translation proteins SH3-like domain
APE_2176a	SSF103456	Preprotein translocase SecE subunit
APE_2177.1	SSF88723	PIN domain-like
APE_2178.1	SSF54631	CBS-domain pair
APE_2180.1	SSF117396	TM1631-like
APE_2182	SSF55979	DNA clamp
APE_2188.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2190	SSF64182	DHH phosphoesterases
APE_2192.1	SSF50249	Nucleic acid-binding proteins
APE_2192.1	SSF55681	Class II aaRS and biotin synthetases
APE_2196	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_2199.1	SSF89124	Nop domain
APE_2200	SSF141300	GatD N-terminal domain-like
APE_2200	SSF53774	Glutaminase/Asparaginase
APE_2202	SSF55261	GAD domain-like
APE_2202	SSF55931	Glutamine synthetase/guanido kinase
APE_2202	SSF89095	GatB/YqeY motif
APE_2208.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2211.1	SSF82784	OsmC-like
APE_2212.1	SSF52096	ClpP/crotonase
APE_2213	SSF47741	CO dehydrogenase ISP C-domain like
APE_2213	SSF54292	2Fe-2S ferredoxin-like
APE_2216.1	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
APE_2216.1	SSF56003	Molybdenum cofactor-binding domain
APE_2219	SSF55447	CO dehydrogenase flavoprotein C-terminal domain-like
APE_2219	SSF56176	FAD-binding/transporter-associated domain-like
APE_2220.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2221.1	SSF53300	vWA-like
APE_2223	SSF53448	Nucleotide-diphospho-sugar transferases
APE_2225.1	SSF55961	Bet v1-like
APE_2229.1	SSF56672	DNA/RNA polymerases
APE_2235	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2239.1	SSF50129	GroES-like
APE_2239.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_2240	SSF51556	Metallo-dependent hydrolases
APE_2242.1	SSF117916	Fe-S cluster assembly (FSCA) domain-like
APE_2247	SSF50486	FMT C-terminal domain-like
APE_2248.1	SSF53383	PLP-dependent transferases
APE_2252.1	SSF161098	MetI-like
APE_2253.1	SSF161098	MetI-like
APE_2254.1	SSF53850	Periplasmic binding protein-like II
APE_2257	SSF53850	Periplasmic binding protein-like II
APE_2260	SSF161098	MetI-like
APE_2261.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2263.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2265.1	SSF56281	Metallo-hydrolase/oxidoreductase
APE_2267.1	SSF53383	PLP-dependent transferases
APE_2269.1	SSF103473	MFS general substrate transporter
APE_2272.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2272.1	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APE_2273.1	SSF52833	Thioredoxin-like
APE_2277.1	SSF56317	Carbon-nitrogen hydrolase
APE_2278	SSF52833	Thioredoxin-like
APE_2279.1	SSF54211	Ribosomal protein S5 domain 2-like
APE_2281.1	SSF158372	AF1782-like
APE_2281.1	SSF52374	Nucleotidylyl transferase
APE_2283.1	SSF56300	Metallo-dependent phosphatases
APE_2284.1	SSF56801	Acetyl-CoA synthetase-like
APE_2284a	SSF47240	Ferritin-like
APE_2286	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
APE_2289.1	SSF103165	Ta1353-like
APE_2290.1	SSF53474	alpha/beta-Hydrolases
APE_2290.1	SSF69304	Tricorn protease N-terminal domain
APE_2291	SSF53448	Nucleotide-diphospho-sugar transferases
APE_2295.1	SSF56281	Metallo-hydrolase/oxidoreductase
APE_2296	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_2296	SSF69075	Glutamyl tRNA-reductase dimerization domain
APE_2296	SSF69742	Glutamyl tRNA-reductase catalytic, N-terminal domain
APE_2298.1	SSF53850	Periplasmic binding protein-like II
APE_2298.1	SSF54782	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
APE_2299.1	SSF53383	PLP-dependent transferases
APE_2300.1	SSF51569	Aldolase
APE_2302.1	SSF46785	"Winged helix" DNA-binding domain
APE_2302.1	SSF55681	Class II aaRS and biotin synthetases
APE_2305	SSF46955	Putative DNA-binding domain
APE_2305	SSF55681	Class II aaRS and biotin synthetases
APE_2310.1	SSF56112	Protein kinase-like (PK-like)
APE_2316	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
APE_2317.1	SSF50715	Ribosomal protein L25-like
APE_2317.1	SSF52374	Nucleotidylyl transferase
APE_2324.1	SSF50447	Translation proteins
APE_2326.1	SSF81333	F1F0 ATP synthase subunit C
APE_2328	SSF52954	Class II aaRS ABD-related
APE_2328	SSF55681	Class II aaRS and biotin synthetases
APE_2328	SSF64586	C-terminal domain of ProRS
APE_2333.1	SSF52980	Restriction endonuclease-like
APE_2336.1	SSF159234	FomD-like
APE_2336a	SSF158436	Ta0600-like
APE_2338	SSF101852	Bacterial fluorinating enzyme, C-terminal domain
APE_2338	SSF102522	Bacterial fluorinating enzyme, N-terminal domain
APE_2341	SSF55681	Class II aaRS and biotin synthetases
APE_2342.1	SSF55681	Class II aaRS and biotin synthetases
APE_2344.1	SSF102114	Radical SAM enzymes
APE_2347.1	SSF51230	Single hybrid motif
APE_2348	SSF51366	Ribulose-phoshate binding barrel
APE_2349.1	SSF53271	PRTase-like
APE_2350.1	SSF52499	Isochorismatase-like hydrolases
APE_2354	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
APE_2354	SSF56645	Acyl-CoA dehydrogenase NM domain-like
APE_2356.1	SSF141322	NfeD domain-like
APE_2359.1	SSF109604	HD-domain/PDEase-like
APE_2361.1	SSF53474	alpha/beta-Hydrolases
APE_2362.1	SSF53613	Ribokinase-like
APE_2362.1	SSF64153	YjeF N-terminal domain-like
APE_2365.1	SSF88723	PIN domain-like
APE_2366.1	SSF50447	Translation proteins
APE_2366.1	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
APE_2366.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2374	SSF50447	Translation proteins
APE_2374	SSF52156	Initiation factor IF2/eIF5b, domain 3
APE_2374	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2377	SSF54919	Nucleoside diphosphate kinase, NDK
APE_2379a	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
APE_2379b.1	SSF50249	Nucleic acid-binding proteins
APE_2382.1	SSF53901	Thiolase-like
APE_2384	SSF53901	Thiolase-like
APE_2389	SSF50249	Nucleic acid-binding proteins
APE_2390.1	SSF50249	Nucleic acid-binding proteins
APE_2392.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2392.1	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APE_2397	SSF55821	YrdC/RibB
APE_2400.1	SSF53613	Ribokinase-like
APE_2400.1	SSF53639	AraD/HMP-PK domain-like
APE_2406.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2408.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2409	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2413	SSF46785	"Winged helix" DNA-binding domain
APE_2418.1	SSF52402	Adenine nucleotide alpha hydrolases-like
APE_2419	SSF52402	Adenine nucleotide alpha hydrolases-like
APE_2419	SSF52467	DHS-like NAD/FAD-binding domain
APE_2421	SSF51905	FAD/NAD(P)-binding domain
APE_2421	SSF54373	FAD-linked reductases, C-terminal domain
APE_2423	SSF53383	PLP-dependent transferases
APE_2424	SSF74784	Translin
APE_2425	SSF54211	Ribosomal protein S5 domain 2-like
APE_2430.1	SSF52833	Thioredoxin-like
APE_2431.1	SSF143437	THUMP domain-like
APE_2433.1	SSF53738	Phosphoglucomutase, first 3 domains
APE_2433.1	SSF55957	Phosphoglucomutase, C-terminal domain
APE_2436	SSF51556	Metallo-dependent hydrolases
APE_2436a	SSF55718	SCP-like
APE_2437.1	SSF51569	Aldolase
APE_2438	SSF51717	Dihydropteroate synthetase-like
APE_2439	SSF54211	Ribosomal protein S5 domain 2-like
APE_2439	SSF55060	GHMP Kinase, C-terminal domain
APE_2441.1	SSF53474	alpha/beta-Hydrolases
APE_2441.1	SSF82171	DPP6 N-terminal domain-like
APE_2443.1	SSF47954	Cyclin-like
APE_2446	SSF51998	PFL-like glycyl radical enzymes
APE_2448	SSF51366	Ribulose-phoshate binding barrel
APE_2450.1	SSF52949	Macro domain-like
APE_2450.1	SSF53187	Zn-dependent exopeptidases
APE_2452	SSF52317	Class I glutamine amidotransferase-like
APE_2452	SSF52402	Adenine nucleotide alpha hydrolases-like
APE_2456.1	SSF116726	TrkA C-terminal domain-like
APE_2456.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_2458	SSF51604	Enolase C-terminal domain-like
APE_2458	SSF54826	Enolase N-terminal domain-like
APE_2460.1	SSF54862	4Fe-4S ferredoxins
APE_2461.1	SSF52374	Nucleotidylyl transferase
APE_2464.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2465.1	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_2466	SSF103473	MFS general substrate transporter
APE_2468.1	SSF100950	NagB/RpiA/CoA transferase-like
APE_2470	SSF46785	"Winged helix" DNA-binding domain
APE_2472.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2473.1	SSF56300	Metallo-dependent phosphatases
APE_2474.1	SSF50692	ADC-like
APE_2474.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2474.1	SSF54585	Cdc48 domain 2-like
APE_2480.1	SSF54984	eEF-1beta-like
APE_2484.1	SSF53254	Phosphoglycerate mutase-like
APE_2486.1	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APE_2489.1	SSF54631	CBS-domain pair
APE_2493.1	SSF102114	Radical SAM enzymes
APE_2495.1	SSF54197	HIT-like
APE_2496.1	SSF52833	Thioredoxin-like
APE_2499.1	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
APE_2500.1	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
APE_2502.1	SSF51556	Metallo-dependent hydrolases
APE_2503.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_2505	SSF46785	"Winged helix" DNA-binding domain
APE_2507.1	SSF51735	NAD(P)-binding Rossmann-fold domains
APE_2507.1	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
APE_2509	SSF52467	DHS-like NAD/FAD-binding domain
APE_2509	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APE_2516	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2517.1	SSF46785	"Winged helix" DNA-binding domain
APE_2519.1	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
APE_2520.1	SSF51395	FMN-linked oxidoreductases
APE_2521.1	SSF53822	Periplasmic binding protein-like I
APE_2524.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2526	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2528.1	SSF53067	Actin-like ATPase domain
APE_2533.1	SSF48208	Six-hairpin glycosidases
APE_2533.1	SSF52833	Thioredoxin-like
APE_2537.1	SSF103481	Multidrug resistance efflux transporter EmrE
APE_2540.1	SSF55826	YbaK/ProRS associated domain
APE_2545.1	SSF53850	Periplasmic binding protein-like II
APE_2546	SSF51366	Ribulose-phoshate binding barrel
APE_2547	SSF51366	Ribulose-phoshate binding barrel
APE_2548	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
APE_2550	SSF51366	Ribulose-phoshate binding barrel
APE_2551	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
APE_2551	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
APE_2553.1	SSF56322	ADC synthase
APE_2555	SSF52317	Class I glutamine amidotransferase-like
APE_2556.1	SSF50692	ADC-like
APE_2556.1	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
APE_2563	SSF50022	ISP domain
APE_2565.1	SSF46785	"Winged helix" DNA-binding domain
APE_2568.1	SSF52833	Thioredoxin-like
APE_2570.1	SSF47598	Ribbon-helix-helix
APE_2570.1	SSF55021	ACT-like
APE_2571.1	SSF56784	HAD-like
APE_2571.1	SSF81653	Calcium ATPase, transduction domain A
APE_2571.1	SSF81665	Calcium ATPase, transmembrane domain M
APE_2575	SSF53383	PLP-dependent transferases
APE_2577.1	SSF102114	Radical SAM enzymes
APE_2579.1	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2580	SSF50475	FMN-binding split barrel
APE_2581	SSF55681	Class II aaRS and biotin synthetases
APE_2583.1	SSF118215	Proton glutamate symport protein
APE_2585	SSF56281	Metallo-hydrolase/oxidoreductase
APE_2588	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APE_2592.1	SSF53822	Periplasmic binding protein-like I
APE_2592a	SSF64307	SirA-like
APE_2595.1	SSF52821	Rhodanese/Cell cycle control phosphatase
APE_2598	SSF102114	Radical SAM enzymes
APE_2601.1	SSF55909	Pentein
APE_2604	SSF56801	Acetyl-CoA synthetase-like
APE_2604a.1	SSF56801	Acetyl-CoA synthetase-like
APE_2605.1	SSF54862	4Fe-4S ferredoxins
APE_2610	SSF50692	ADC-like
APE_2610	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
APE_2612.1	SSF89155	TorD-like
APE_2615.1	SSF103473	MFS general substrate transporter
APE_2616	SSF88723	PIN domain-like
APE_2616a	SSF141694	AF2212/PG0164-like
APE_2617.1	SSF88723	PIN domain-like
APE_2617a	SSF89447	AbrB/MazE/MraZ-like
APE_2617b	SSF88723	PIN domain-like
APE_2617c	SSF141694	AF2212/PG0164-like
APE_2617e.1	SSF46689	Homeodomain-like