Atu3045	PWY-5692	allantoin degradation to glyoxylate II
Atu3045	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
Atu3056	PWY-1001	cellulose biosynthesis
Atu3073	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Atu3073	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Atu3085	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Atu3085	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Atu3140	PWY-6497	D-galactarate degradation II
Atu3140	PWY-6499	D-glucarate degradation II
Atu3141	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Atu3142	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Atu3205	PWY-5692	allantoin degradation to glyoxylate II
Atu3205	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
Atu3217	PWY-6832	2-aminoethylphosphonate degradation II
Atu3219	PWY-5101	L-isoleucine biosynthesis II
Atu3219	PWY-5103	L-isoleucine biosynthesis III
Atu3219	PWY-5104	L-isoleucine biosynthesis IV
Atu3219	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Atu3243	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Atu3257	PWY-7242	D-fructuronate degradation
Atu3288	PWY-6897	thiamin salvage II
Atu3288	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Atu3288	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Atu3289	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Atu3289	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Atu3289	PWY-6897	thiamin salvage II
Atu3289	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Atu3289	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Atu3289	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Atu3289	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Atu3290	PWY-6910	hydroxymethylpyrimidine salvage
Atu3290	PWY-7356	thiamin salvage IV (yeast)
Atu3290	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Atu3292	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Atu3307	PWY-6788	cellulose degradation II (fungi)
Atu3309	PWY-1001	cellulose biosynthesis
Atu3312	PWY-7456	mannan degradation
Atu3314	PWY-5129	sphingolipid biosynthesis (plants)
Atu3315	PWY-3821	galactose degradation III
Atu3315	PWY-6317	galactose degradation I (Leloir pathway)
Atu3315	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Atu3315	PWY-6527	stachyose degradation
Atu3315	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Atu3315	PWY-7344	UDP-D-galactose biosynthesis
Atu3344	PWY-6703	preQ<sub>0</sub> biosynthesis
Atu3346	PWY-6703	preQ<sub>0</sub> biosynthesis
Atu3353	PWY-5659	GDP-mannose biosynthesis
Atu3353	PWY-6073	alginate biosynthesis I (algal)
Atu3353	PWY-6082	alginate biosynthesis II (bacterial)
Atu3353	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Atu3356	PWY-1281	sulfoacetaldehyde degradation I
Atu3356	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Atu3356	PWY-5482	pyruvate fermentation to acetate II
Atu3356	PWY-5485	pyruvate fermentation to acetate IV
Atu3356	PWY-5497	purine nucleobases degradation II (anaerobic)
Atu3356	PWY-6637	sulfolactate degradation II
Atu3356	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Atu3398	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Atu3400	PWY-5692	allantoin degradation to glyoxylate II
Atu3400	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
Atu3405	PWY-7425	2-chloroacrylate degradation I
Atu3469	PWY-1042	glycolysis IV (plant cytosol)
Atu3469	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Atu3469	PWY-5484	glycolysis II (from fructose 6-phosphate)
Atu3469	PWY-5723	Rubisco shunt
Atu3469	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Atu3469	PWY-6886	1-butanol autotrophic biosynthesis
Atu3469	PWY-6901	superpathway of glucose and xylose degradation
Atu3469	PWY-7003	glycerol degradation to butanol
Atu3469	PWY-7124	ethylene biosynthesis V (engineered)
Atu3469	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Atu3473	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Atu3478	PWY-4381	fatty acid biosynthesis initiation I
Atu3478	PWY-5743	3-hydroxypropanoate cycle
Atu3478	PWY-5744	glyoxylate assimilation
Atu3478	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Atu3478	PWY-6679	jadomycin biosynthesis
Atu3478	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Atu3483	PWY-6654	phosphopantothenate biosynthesis III
Atu3508	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
Atu3508	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
Atu3508	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
Atu3508	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
Atu3508	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
Atu3508	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
Atu3508	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
Atu3508	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
Atu3508	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Atu3508	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
Atu3516	PWY-6502	oxidized GTP and dGTP detoxification
Atu3518	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Atu3529	PWY-7242	D-fructuronate degradation
Atu3578	PWY-4261	glycerol degradation I
Atu3578	PWY-6118	glycerol-3-phosphate shuttle
Atu3578	PWY-6952	glycerophosphodiester degradation
Atu3579	PWY-5743	3-hydroxypropanoate cycle
Atu3579	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Atu3579	PWY-6728	methylaspartate cycle
Atu3579	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Atu3580	PWY-5743	3-hydroxypropanoate cycle
Atu3580	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Atu3580	PWY-6728	methylaspartate cycle
Atu3580	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Atu3586	PWY-4381	fatty acid biosynthesis initiation I
Atu3586	PWY-5743	3-hydroxypropanoate cycle
Atu3586	PWY-5744	glyoxylate assimilation
Atu3586	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Atu3586	PWY-6679	jadomycin biosynthesis
Atu3586	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Atu3593	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Atu3593	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Atu3593	PWY-6268	adenosylcobalamin salvage from cobalamin
Atu3593	PWY-6269	adenosylcobalamin salvage from cobinamide II
Atu3597	PWY-1361	benzoyl-CoA degradation I (aerobic)
Atu3597	PWY-5109	2-methylbutanoate biosynthesis
Atu3597	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Atu3597	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Atu3597	PWY-5177	glutaryl-CoA degradation
Atu3597	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Atu3597	PWY-6435	4-hydroxybenzoate biosynthesis V
Atu3597	PWY-6583	pyruvate fermentation to butanol I
Atu3597	PWY-6863	pyruvate fermentation to hexanol
Atu3597	PWY-6883	pyruvate fermentation to butanol II
Atu3597	PWY-6944	androstenedione degradation
Atu3597	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Atu3597	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Atu3597	PWY-7007	methyl ketone biosynthesis
Atu3597	PWY-7046	4-coumarate degradation (anaerobic)
Atu3597	PWY-7094	fatty acid salvage
Atu3597	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Atu3597	PWY-735	jasmonic acid biosynthesis
Atu3597	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Atu3599	PWY-4983	L-citrulline-nitric oxide cycle
Atu3599	PWY-4984	urea cycle
Atu3599	PWY-5	canavanine biosynthesis
Atu3599	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Atu3599	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Atu3601	PWY-2941	L-lysine biosynthesis II
Atu3601	PWY-2942	L-lysine biosynthesis III
Atu3601	PWY-5097	L-lysine biosynthesis VI
Atu3604	PWY-6599	guanine and guanosine salvage II
Atu3604	PWY-6609	adenine and adenosine salvage III
Atu3604	PWY-6610	adenine and adenosine salvage IV
Atu3604	PWY-6620	guanine and guanosine salvage
Atu3614	PWY-5386	methylglyoxal degradation I
Atu3621	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
Atu3622	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
Atu3625	PWY-6164	3-dehydroquinate biosynthesis I
Atu3626	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Atu3630	PWY-4381	fatty acid biosynthesis initiation I
Atu3630	PWY-5743	3-hydroxypropanoate cycle
Atu3630	PWY-5744	glyoxylate assimilation
Atu3630	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Atu3630	PWY-6679	jadomycin biosynthesis
Atu3630	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Atu3667	PWY-5155	&beta;-alanine biosynthesis III
Atu3709	PWY-6749	CMP-legionaminate biosynthesis I
Atu3736	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Atu3736	PWY-5723	Rubisco shunt
Atu3736	PWY-6891	thiazole biosynthesis II (Bacillus)
Atu3736	PWY-6892	thiazole biosynthesis I (E. coli)
Atu3736	PWY-6901	superpathway of glucose and xylose degradation
Atu3736	PWY-7560	methylerythritol phosphate pathway II
Atu3737	PWY-1042	glycolysis IV (plant cytosol)
Atu3737	PWY-5484	glycolysis II (from fructose 6-phosphate)
Atu3737	PWY-6901	superpathway of glucose and xylose degradation
Atu3737	PWY-7003	glycerol degradation to butanol
Atu3739	PWY-1042	glycolysis IV (plant cytosol)
Atu3739	PWY-5484	glycolysis II (from fructose 6-phosphate)
Atu3739	PWY-6886	1-butanol autotrophic biosynthesis
Atu3739	PWY-6901	superpathway of glucose and xylose degradation
Atu3739	PWY-7003	glycerol degradation to butanol
Atu3740	PWY-1042	glycolysis IV (plant cytosol)
Atu3740	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Atu3740	PWY-5484	glycolysis II (from fructose 6-phosphate)
Atu3740	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Atu3740	PWY-7385	1,3-propanediol biosynthesis (engineered)
Atu3748	PWY-2301	<i>myo</i>-inositol biosynthesis
Atu3748	PWY-4702	phytate degradation I
Atu3748	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
Atu3750	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Atu3750	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Atu3750	PWY-6897	thiamin salvage II
Atu3750	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Atu3750	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Atu3750	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Atu3750	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Atu3754	PWY-6123	inosine-5'-phosphate biosynthesis I
Atu3754	PWY-7234	inosine-5'-phosphate biosynthesis III
Atu3762	PWY-1042	glycolysis IV (plant cytosol)
Atu3762	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Atu3762	PWY-5484	glycolysis II (from fructose 6-phosphate)
Atu3762	PWY-5723	Rubisco shunt
Atu3762	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Atu3762	PWY-6886	1-butanol autotrophic biosynthesis
Atu3762	PWY-6901	superpathway of glucose and xylose degradation
Atu3762	PWY-7003	glycerol degradation to butanol
Atu3762	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Atu3762	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Atu3778	PWY-3801	sucrose degradation II (sucrose synthase)
Atu3778	PWY-6527	stachyose degradation
Atu3778	PWY-6981	chitin biosynthesis
Atu3778	PWY-7238	sucrose biosynthesis II
Atu3778	PWY-7343	UDP-glucose biosynthesis
Atu3793	PWY-5392	reductive TCA cycle II
Atu3793	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Atu3793	PWY-5690	TCA cycle II (plants and fungi)
Atu3793	PWY-5913	TCA cycle VI (obligate autotrophs)
Atu3793	PWY-6728	methylaspartate cycle
Atu3793	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Atu3793	PWY-7254	TCA cycle VII (acetate-producers)
Atu3793	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Atu3823	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Atu3823	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Atu3823	PWY-6936	seleno-amino acid biosynthesis
Atu3823	PWY-702	L-methionine biosynthesis II
Atu3874	PWY-4261	glycerol degradation I
Atu3876	PWY-4261	glycerol degradation I
Atu3876	PWY-6118	glycerol-3-phosphate shuttle
Atu3876	PWY-6952	glycerophosphodiester degradation
Atu3890	PWY-4261	glycerol degradation I
Atu3897	PWY-4261	glycerol degradation I
Atu3897	PWY-6118	glycerol-3-phosphate shuttle
Atu3897	PWY-6952	glycerophosphodiester degradation
Atu3899	PWY-5194	siroheme biosynthesis
Atu3899	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Atu3902	PWY-6683	sulfate reduction III (assimilatory)
Atu3914	PWY-842	starch degradation I
Atu3927	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Atu3931	PWY-5028	L-histidine degradation II
Atu3931	PWY-5030	L-histidine degradation III
Atu3933	PWY-5028	L-histidine degradation II
Atu3933	PWY-5030	L-histidine degradation III
Atu3934	PWY-5028	L-histidine degradation II
Atu3934	PWY-5030	L-histidine degradation III
Atu3948	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Atu3971	PWY-5101	L-isoleucine biosynthesis II
Atu3971	PWY-5103	L-isoleucine biosynthesis III
Atu3971	PWY-5104	L-isoleucine biosynthesis IV
Atu3971	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Atu3975	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Atu3975	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Atu3985	PWY-3341	L-proline biosynthesis III
Atu3985	PWY-4981	L-proline biosynthesis II (from arginine)
Atu3985	PWY-6344	L-ornithine degradation II (Stickland reaction)
Atu3997	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Atu3999	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Atu4001	PWY-4381	fatty acid biosynthesis initiation I
Atu4007	PWY-31	canavanine degradation
Atu4007	PWY-4984	urea cycle
Atu4007	PWY-6305	putrescine biosynthesis IV
Atu4007	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Atu4066	PWY-3661	glycine betaine degradation I
Atu4066	PWY-4722	creatinine degradation II
Atu4068	PWY-3661	glycine betaine degradation I
Atu4068	PWY-4722	creatinine degradation II
Atu4069	PWY-3661	glycine betaine degradation I
Atu4069	PWY-4722	creatinine degradation II
Atu4070	PWY-3661	glycine betaine degradation I
Atu4070	PWY-4722	creatinine degradation II
Atu4074	PWY-6749	CMP-legionaminate biosynthesis I
Atu4075	PWY-622	starch biosynthesis
Atu4076	PWY-622	starch biosynthesis
Atu4077	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
Atu4077	PWY-622	starch biosynthesis
Atu4078	PWY-5941	glycogen degradation II (eukaryotic)
Atu4078	PWY-622	starch biosynthesis
Atu4078	PWY-6731	starch degradation III
Atu4078	PWY-6737	starch degradation V
Atu4078	PWY-7238	sucrose biosynthesis II
Atu4081	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Atu4081	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Atu4096	PWY-5316	nicotine biosynthesis
Atu4096	PWY-5381	pyridine nucleotide cycling (plants)
Atu4096	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Atu4096	PWY-7342	superpathway of nicotine biosynthesis
Atu4097	PWY-5316	nicotine biosynthesis
Atu4097	PWY-7342	superpathway of nicotine biosynthesis
Atu4098	PWY-5316	nicotine biosynthesis
Atu4098	PWY-7342	superpathway of nicotine biosynthesis
Atu4103	PWY-7205	CMP phosphorylation
Atu4128	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Atu4128	PWY-7494	choline degradation IV
Atu4149	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Atu4157	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
Atu4157	PWY-6853	ethylene biosynthesis II (microbes)
Atu4157	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Atu4166	PWY-3821	galactose degradation III
Atu4166	PWY-6317	galactose degradation I (Leloir pathway)
Atu4166	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Atu4166	PWY-6527	stachyose degradation
Atu4166	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Atu4166	PWY-7344	UDP-D-galactose biosynthesis
Atu4169	PWY-6562	norspermidine biosynthesis
Atu4172	PWY-2941	L-lysine biosynthesis II
Atu4172	PWY-2942	L-lysine biosynthesis III
Atu4172	PWY-5097	L-lysine biosynthesis VI
Atu4172	PWY-6559	spermidine biosynthesis II
Atu4172	PWY-6562	norspermidine biosynthesis
Atu4172	PWY-7153	grixazone biosynthesis
Atu4221	PWY-3661	glycine betaine degradation I
Atu4221	PWY-4722	creatinine degradation II
Atu4222	PWY-3661	glycine betaine degradation I
Atu4222	PWY-4722	creatinine degradation II
Atu4223	PWY-3661	glycine betaine degradation I
Atu4223	PWY-4722	creatinine degradation II
Atu4224	PWY-3661	glycine betaine degradation I
Atu4224	PWY-4722	creatinine degradation II
Atu4230	PWY-381	nitrate reduction II (assimilatory)
Atu4230	PWY-5675	nitrate reduction V (assimilatory)
Atu4230	PWY-6549	L-glutamine biosynthesis III
Atu4230	PWY-6963	ammonia assimilation cycle I
Atu4230	PWY-6964	ammonia assimilation cycle II
Atu4231	PWY-2201	folate transformations I
Atu4231	PWY-5497	purine nucleobases degradation II (anaerobic)
Atu4295	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Atu4310	PWY-3661	glycine betaine degradation I
Atu4310	PWY-4722	creatinine degradation II
Atu4311	PWY-3661	glycine betaine degradation I
Atu4311	PWY-4722	creatinine degradation II
Atu4312	PWY-3661	glycine betaine degradation I
Atu4312	PWY-4722	creatinine degradation II
Atu4313	PWY-3661	glycine betaine degradation I
Atu4313	PWY-4722	creatinine degradation II
Atu4314	PWY-1622	formaldehyde assimilation I (serine pathway)
Atu4314	PWY-181	photorespiration
Atu4314	PWY-2161	folate polyglutamylation
Atu4314	PWY-2201	folate transformations I
Atu4314	PWY-3661	glycine betaine degradation I
Atu4314	PWY-3661-1	glycine betaine degradation II (mammalian)
Atu4314	PWY-3841	folate transformations II
Atu4314	PWY-5497	purine nucleobases degradation II (anaerobic)
Atu4315	PWY-2201	folate transformations I
Atu4315	PWY-5497	purine nucleobases degradation II (anaerobic)
Atu4324	PWY-4261	glycerol degradation I
Atu4378	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Atu4382	PWY-6523	nitrite-dependent anaerobic methane oxidation
Atu4382	PWY-6748	nitrate reduction VII (denitrification)
Atu4382	PWY-7084	nitrifier denitrification
Atu4388	PWY-3781	aerobic respiration I (cytochrome c)
Atu4388	PWY-4521	arsenite oxidation I (respiratory)
Atu4388	PWY-6692	Fe(II) oxidation
Atu4388	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Atu4416	PWY-6012	acyl carrier protein metabolism I
Atu4416	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Atu4426	PWY-6610	adenine and adenosine salvage IV
Atu4430	PWY-7533	gliotoxin biosynthesis
Atu4441	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Atu4453	PWY-4261	glycerol degradation I
Atu4464	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Atu4464	PWY-5723	Rubisco shunt
Atu4474	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Atu4480	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Atu4480	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Atu4482	PWY-4261	glycerol degradation I
Atu4485	PWY-3121	linamarin degradation
Atu4485	PWY-5176	coumarin biosynthesis (via 2-coumarate)
Atu4485	PWY-6002	lotaustralin degradation
Atu4485	PWY-6788	cellulose degradation II (fungi)
Atu4485	PWY-7089	taxiphyllin bioactivation
Atu4485	PWY-7091	linustatin bioactivation
Atu4485	PWY-7092	neolinustatin bioactivation
Atu4494	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Atu4494	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Atu4494	PWY-7242	D-fructuronate degradation
Atu4494	PWY-7310	D-glucosaminate degradation
Atu4503	PWY-6167	flavin biosynthesis II (archaea)
Atu4509	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Atu4531	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Atu4531	PWY-6416	quinate degradation II
Atu4531	PWY-6707	gallate biosynthesis
Atu4532	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Atu4542	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
Atu4544	PWY-6215	4-chlorobenzoate degradation
Atu4549	PWY-1361	benzoyl-CoA degradation I (aerobic)
Atu4549	PWY-2361	3-oxoadipate degradation
Atu4549	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
Atu4554	PWY-5940	streptomycin biosynthesis
Atu4554	PWY-7237	<i>myo</i>-, <i>chiro</i>- and <i>scillo</i>-inositol degradation
Atu4554	PWY-7241	<I>myo</I>-inositol degradation II
Atu4566	PWY-6348	phosphate acquisition
Atu4566	PWY-6357	phosphate utilization in cell wall regeneration
Atu4566	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Atu4566	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Atu4583	PWY-6854	ethylene biosynthesis III (microbes)
Atu4615	PWY-3221	dTDP-L-rhamnose biosynthesis II
Atu4615	PWY-6808	dTDP-D-forosamine biosynthesis
Atu4615	PWY-6942	dTDP-D-desosamine biosynthesis
Atu4615	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Atu4615	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Atu4615	PWY-6974	dTDP-L-olivose biosynthesis
Atu4615	PWY-6976	dTDP-L-mycarose biosynthesis
Atu4615	PWY-7104	dTDP-L-megosamine biosynthesis
Atu4615	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Atu4615	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Atu4615	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Atu4615	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Atu4615	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Atu4615	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Atu4615	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Atu4615	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Atu4617	PWY-3221	dTDP-L-rhamnose biosynthesis II
Atu4617	PWY-6808	dTDP-D-forosamine biosynthesis
Atu4617	PWY-6942	dTDP-D-desosamine biosynthesis
Atu4617	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Atu4617	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Atu4617	PWY-6974	dTDP-L-olivose biosynthesis
Atu4617	PWY-6976	dTDP-L-mycarose biosynthesis
Atu4617	PWY-7104	dTDP-L-megosamine biosynthesis
Atu4617	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Atu4617	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Atu4617	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Atu4617	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Atu4617	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Atu4617	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Atu4617	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Atu4617	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Atu4625	PWY-7242	D-fructuronate degradation
Atu4651	PWY-4983	L-citrulline-nitric oxide cycle
Atu4651	PWY-4984	urea cycle
Atu4651	PWY-5	canavanine biosynthesis
Atu4651	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Atu4651	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Atu4704	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Atu4704	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Atu4708	PWY-1881	formate oxidation to CO<sub>2</sub>
Atu4708	PWY-5497	purine nucleobases degradation II (anaerobic)
Atu4708	PWY-6696	oxalate degradation III
Atu4722	PWY-4041	&gamma;-glutamyl cycle
Atu4722	PWY-5826	hypoglycin biosynthesis
Atu4726	PWY-6854	ethylene biosynthesis III (microbes)
Atu4734	PWY-5747	2-methylcitrate cycle II
Atu4769	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Atu4769	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Atu4771	PWY-6698	oxalate degradation V
Atu4789	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Atu4789	PWY-5739	GDP-D-perosamine biosynthesis
Atu4789	PWY-5740	GDP-L-colitose biosynthesis
Atu4789	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Atu4790	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Atu4811	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Atu4811	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Atu4811	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Atu4833	PWY-5767	Atu4833
Atu4835	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Atu4848	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Atu8036	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
Atu8094	PWY-3781	aerobic respiration I (cytochrome c)
Atu8094	PWY-4521	arsenite oxidation I (respiratory)
Atu8094	PWY-6692	Fe(II) oxidation
Atu8094	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
