Alide_0012	PWY-4381	fatty acid biosynthesis initiation I
Alide_0012	PWY-5743	3-hydroxypropanoate cycle
Alide_0012	PWY-5744	glyoxylate assimilation
Alide_0012	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide_0012	PWY-6679	jadomycin biosynthesis
Alide_0012	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide_0019	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Alide_0019	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Alide_0019	PWY-6164	3-dehydroquinate biosynthesis I
Alide_0026	PWY-5392	reductive TCA cycle II
Alide_0026	PWY-5537	pyruvate fermentation to acetate V
Alide_0026	PWY-5538	pyruvate fermentation to acetate VI
Alide_0026	PWY-5690	TCA cycle II (plants and fungi)
Alide_0026	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide_0026	PWY-6728	methylaspartate cycle
Alide_0026	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_0026	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide_0034	PWY-6807	xyloglucan degradation II (exoglucanase)
Alide_0061	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide_0061	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide_0077	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Alide_0077	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Alide_0077	PWY-6268	adenosylcobalamin salvage from cobalamin
Alide_0077	PWY-6269	adenosylcobalamin salvage from cobinamide II
Alide_0095	PWY-5669	phosphatidylethanolamine biosynthesis I
Alide_0112	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Alide_0125	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide_0125	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide_0125	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide_0128	PWY-3781	aerobic respiration I (cytochrome c)
Alide_0128	PWY-4521	arsenite oxidation I (respiratory)
Alide_0128	PWY-6692	Fe(II) oxidation
Alide_0128	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide_0189	PWY-4381	fatty acid biosynthesis initiation I
Alide_0189	PWY-5743	3-hydroxypropanoate cycle
Alide_0189	PWY-5744	glyoxylate assimilation
Alide_0189	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide_0189	PWY-6679	jadomycin biosynthesis
Alide_0189	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide_0204	PWY-2201	folate transformations I
Alide_0204	PWY-3841	folate transformations II
Alide_0256	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Alide_0283	PWY-5392	reductive TCA cycle II
Alide_0283	PWY-5537	pyruvate fermentation to acetate V
Alide_0283	PWY-5538	pyruvate fermentation to acetate VI
Alide_0283	PWY-5690	TCA cycle II (plants and fungi)
Alide_0283	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide_0283	PWY-6728	methylaspartate cycle
Alide_0283	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_0283	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide_0284	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide_0284	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide_0290	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Alide_0295	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Alide_0297	PWY-5057	L-valine degradation II
Alide_0297	PWY-5076	L-leucine degradation III
Alide_0297	PWY-5078	L-isoleucine degradation II
Alide_0297	PWY-5101	L-isoleucine biosynthesis II
Alide_0297	PWY-5103	L-isoleucine biosynthesis III
Alide_0297	PWY-5104	L-isoleucine biosynthesis IV
Alide_0297	PWY-5108	L-isoleucine biosynthesis V
Alide_0303	PWY-723	alkylnitronates degradation
Alide_0323	PWY-5418	phenol degradation I (aerobic)
Alide_0327	PWY-5418	phenol degradation I (aerobic)
Alide_0330	PWY-5419	catechol degradation to 2-oxopent-4-enoate II
Alide_0330	PWY-5641	2-nitrotoluene degradation
Alide_0338	PWY-5162	2-oxopentenoate degradation
Alide_0338	PWY-5436	L-threonine degradation IV
Alide_0338	PWY-5480	pyruvate fermentation to ethanol I
Alide_0338	PWY-6587	pyruvate fermentation to ethanol III
Alide_0338	PWY-7085	triethylamine degradation
Alide_0338	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Alide_0339	PWY-5162	2-oxopentenoate degradation
Alide_0340	PWY-5419	catechol degradation to 2-oxopent-4-enoate II
Alide_0340	PWY-5647	2-nitrobenzoate degradation I
Alide_0340	PWY-5654	2-amino-3-carboxymuconate semialdehyde degradation to 2-oxopentenoate
Alide_0340	PWY-6210	2-aminophenol degradation
Alide_0340	PWY-6214	3-chlorocatechol degradation III (<i>meta</i> pathway)
Alide_0340	PWY-6336	protocatechuate degradation III (<I>para</I>-cleavage pathway)
Alide_0340	PWY-7006	4-amino-3-hydroxybenzoate degradation
Alide_0340	PWY-7480	2,3-dihydroxybenzoate degradation
Alide_0371	PWY-5686	UMP biosynthesis
Alide_0374	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Alide_0380	PWY-31	canavanine degradation
Alide_0380	PWY-4984	urea cycle
Alide_0380	PWY-6305	putrescine biosynthesis IV
Alide_0380	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Alide_0382	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Alide_0382	PWY-7494	choline degradation IV
Alide_0399	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Alide_0399	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Alide_0405	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Alide_0405	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Alide_0429	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Alide_0429	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Alide_0429	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Alide_0430	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Alide_0430	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Alide_0437	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Alide_0439	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Alide_0481	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Alide_0494	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Alide_0495	PWY-6832	2-aminoethylphosphonate degradation II
Alide_0498	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide_0498	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide_0500	PWY-2201	folate transformations I
Alide_0500	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide_0503	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Alide_0503	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide_0503	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Alide_0503	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Alide_0503	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide_0503	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide_0503	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide_0503	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Alide_0513	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Alide_0513	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Alide_0513	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Alide_0513	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Alide_0560	PWY-1361	benzoyl-CoA degradation I (aerobic)
Alide_0560	PWY-5109	2-methylbutanoate biosynthesis
Alide_0560	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Alide_0560	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Alide_0560	PWY-5177	glutaryl-CoA degradation
Alide_0560	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide_0560	PWY-6435	4-hydroxybenzoate biosynthesis V
Alide_0560	PWY-6583	pyruvate fermentation to butanol I
Alide_0560	PWY-6863	pyruvate fermentation to hexanol
Alide_0560	PWY-6883	pyruvate fermentation to butanol II
Alide_0560	PWY-6944	androstenedione degradation
Alide_0560	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Alide_0560	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Alide_0560	PWY-7007	methyl ketone biosynthesis
Alide_0560	PWY-7046	4-coumarate degradation (anaerobic)
Alide_0560	PWY-7094	fatty acid salvage
Alide_0560	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Alide_0560	PWY-735	jasmonic acid biosynthesis
Alide_0560	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Alide_0561	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Alide_0561	PWY-7494	choline degradation IV
Alide_0566	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Alide_0567	PWY-6617	adenosine nucleotides degradation III
Alide_0588	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Alide_0592	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Alide_0592	PWY-6148	tetrahydromethanopterin biosynthesis
Alide_0592	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Alide_0592	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Alide_0593	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Alide_0593	PWY-6148	tetrahydromethanopterin biosynthesis
Alide_0593	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Alide_0593	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Alide_0621	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Alide_0621	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Alide_0621	PWY-5989	stearate biosynthesis II (bacteria and plants)
Alide_0621	PWY-5994	palmitate biosynthesis I (animals and fungi)
Alide_0621	PWY-6113	superpathway of mycolate biosynthesis
Alide_0621	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Alide_0621	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Alide_0621	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide_0621	PWYG-321	mycolate biosynthesis
Alide_0627	PWY-6134	L-tyrosine biosynthesis IV
Alide_0627	PWY-7158	L-phenylalanine degradation V
Alide_0628	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Alide_0631	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Alide_0631	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Alide_0639	PWY-3961	phosphopantothenate biosynthesis II
Alide_0642	PWY-3221	dTDP-L-rhamnose biosynthesis II
Alide_0642	PWY-6808	dTDP-D-forosamine biosynthesis
Alide_0642	PWY-6942	dTDP-D-desosamine biosynthesis
Alide_0642	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Alide_0642	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Alide_0642	PWY-6974	dTDP-L-olivose biosynthesis
Alide_0642	PWY-6976	dTDP-L-mycarose biosynthesis
Alide_0642	PWY-7104	dTDP-L-megosamine biosynthesis
Alide_0642	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Alide_0642	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Alide_0642	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Alide_0642	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Alide_0642	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Alide_0642	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Alide_0642	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Alide_0642	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Alide_0644	PWY-3221	dTDP-L-rhamnose biosynthesis II
Alide_0644	PWY-6808	dTDP-D-forosamine biosynthesis
Alide_0644	PWY-6942	dTDP-D-desosamine biosynthesis
Alide_0644	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Alide_0644	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Alide_0644	PWY-6974	dTDP-L-olivose biosynthesis
Alide_0644	PWY-6976	dTDP-L-mycarose biosynthesis
Alide_0644	PWY-7104	dTDP-L-megosamine biosynthesis
Alide_0644	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Alide_0644	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Alide_0644	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Alide_0644	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Alide_0644	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Alide_0644	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Alide_0644	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Alide_0644	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Alide_0671	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Alide_0671	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Alide_0671	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Alide_0672	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide_0672	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Alide_0677	PWY-1361	benzoyl-CoA degradation I (aerobic)
Alide_0677	PWY-5109	2-methylbutanoate biosynthesis
Alide_0677	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Alide_0677	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Alide_0677	PWY-5177	glutaryl-CoA degradation
Alide_0677	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide_0677	PWY-6435	4-hydroxybenzoate biosynthesis V
Alide_0677	PWY-6583	pyruvate fermentation to butanol I
Alide_0677	PWY-6863	pyruvate fermentation to hexanol
Alide_0677	PWY-6883	pyruvate fermentation to butanol II
Alide_0677	PWY-6944	androstenedione degradation
Alide_0677	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Alide_0677	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Alide_0677	PWY-7007	methyl ketone biosynthesis
Alide_0677	PWY-7046	4-coumarate degradation (anaerobic)
Alide_0677	PWY-7094	fatty acid salvage
Alide_0677	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Alide_0677	PWY-735	jasmonic acid biosynthesis
Alide_0677	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Alide_0687	PWY-723	alkylnitronates degradation
Alide_0702	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Alide_0704	PWY-2201	folate transformations I
Alide_0704	PWY-3841	folate transformations II
Alide_0716	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Alide_0721	PWY-6749	CMP-legionaminate biosynthesis I
Alide_0735	PWY-5659	GDP-mannose biosynthesis
Alide_0735	PWY-6073	alginate biosynthesis I (algal)
Alide_0735	PWY-6082	alginate biosynthesis II (bacterial)
Alide_0735	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Alide_0748	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
Alide_0781	PWY-7052	cyanophycin metabolism
Alide_0782	PWY-7052	cyanophycin metabolism
Alide_0787	PWY-5381	pyridine nucleotide cycling (plants)
Alide_0787	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Alide_0787	PWY-6596	adenosine nucleotides degradation I
Alide_0787	PWY-6606	guanosine nucleotides degradation II
Alide_0787	PWY-6607	guanosine nucleotides degradation I
Alide_0787	PWY-6608	guanosine nucleotides degradation III
Alide_0787	PWY-7185	UTP and CTP dephosphorylation I
Alide_0803	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Alide_0803	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Alide_0803	PWY-6269	adenosylcobalamin salvage from cobinamide II
Alide_0816	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Alide_0816	PWY-5723	Rubisco shunt
Alide_0817	PWY-3801	sucrose degradation II (sucrose synthase)
Alide_0817	PWY-5054	sorbitol biosynthesis I
Alide_0817	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Alide_0817	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Alide_0817	PWY-5659	GDP-mannose biosynthesis
Alide_0817	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Alide_0817	PWY-621	sucrose degradation III (sucrose invertase)
Alide_0817	PWY-622	starch biosynthesis
Alide_0817	PWY-6531	mannitol cycle
Alide_0817	PWY-6981	chitin biosynthesis
Alide_0817	PWY-7238	sucrose biosynthesis II
Alide_0817	PWY-7347	sucrose biosynthesis III
Alide_0817	PWY-7385	1,3-propanediol biosynthesis (engineered)
Alide_0821	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Alide_0821	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Alide_0836	PWY-2941	L-lysine biosynthesis II
Alide_0836	PWY-2942	L-lysine biosynthesis III
Alide_0836	PWY-5097	L-lysine biosynthesis VI
Alide_0846	PWY-6164	3-dehydroquinate biosynthesis I
Alide_0850	PWY-5642	2,4-dinitrotoluene degradation
Alide_0850	PWY-6373	acrylate degradation
Alide_0861	PWY-6834	spermidine biosynthesis III
Alide_0872	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide_0872	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide_0889	PWY-3821	galactose degradation III
Alide_0889	PWY-6317	galactose degradation I (Leloir pathway)
Alide_0889	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Alide_0889	PWY-6527	stachyose degradation
Alide_0889	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Alide_0889	PWY-7344	UDP-D-galactose biosynthesis
Alide_0900	PWY-5663	tetrahydrobiopterin biosynthesis I
Alide_0900	PWY-5664	tetrahydrobiopterin biosynthesis II
Alide_0900	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Alide_0900	PWY-6703	preQ<sub>0</sub> biosynthesis
Alide_0900	PWY-6983	tetrahydrobiopterin biosynthesis III
Alide_0900	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Alide_0903	PWY-3781	aerobic respiration I (cytochrome c)
Alide_0903	PWY-6692	Fe(II) oxidation
Alide_0903	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
Alide_0903	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide_0910	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide_0938	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Alide_0950	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide_0950	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide_0953	PWY-5839	menaquinol-7 biosynthesis
Alide_0953	PWY-5844	menaquinol-9 biosynthesis
Alide_0953	PWY-5849	menaquinol-6 biosynthesis
Alide_0953	PWY-5890	menaquinol-10 biosynthesis
Alide_0953	PWY-5891	menaquinol-11 biosynthesis
Alide_0953	PWY-5892	menaquinol-12 biosynthesis
Alide_0953	PWY-5895	menaquinol-13 biosynthesis
Alide_0964	PWY-5663	tetrahydrobiopterin biosynthesis I
Alide_0964	PWY-5664	tetrahydrobiopterin biosynthesis II
Alide_0964	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Alide_0964	PWY-6703	preQ<sub>0</sub> biosynthesis
Alide_0964	PWY-6983	tetrahydrobiopterin biosynthesis III
Alide_0964	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Alide_0973	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Alide_0983	PWY-7560	methylerythritol phosphate pathway II
Alide_0991	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Alide_0991	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Alide_0991	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Alide_1002	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide_1002	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide_1012	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Alide_1036	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Alide_1044	PWY-1042	glycolysis IV (plant cytosol)
Alide_1044	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide_1044	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Alide_1044	PWY-7003	glycerol degradation to butanol
Alide_1058	PWY-3781	aerobic respiration I (cytochrome c)
Alide_1058	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Alide_1058	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Alide_1058	PWY-6692	Fe(II) oxidation
Alide_1067	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide_1067	PWY-6606	guanosine nucleotides degradation II
Alide_1067	PWY-6608	guanosine nucleotides degradation III
Alide_1067	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Alide_1070	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide_1070	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Alide_1070	PWY-6538	caffeine degradation III (bacteria, via demethylation)
Alide_1070	PWY-6596	adenosine nucleotides degradation I
Alide_1070	PWY-6606	guanosine nucleotides degradation II
Alide_1070	PWY-6607	guanosine nucleotides degradation I
Alide_1070	PWY-6608	guanosine nucleotides degradation III
Alide_1070	PWY-6999	theophylline degradation
Alide_1071	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide_1071	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Alide_1071	PWY-6538	caffeine degradation III (bacteria, via demethylation)
Alide_1071	PWY-6596	adenosine nucleotides degradation I
Alide_1071	PWY-6606	guanosine nucleotides degradation II
Alide_1071	PWY-6607	guanosine nucleotides degradation I
Alide_1071	PWY-6608	guanosine nucleotides degradation III
Alide_1071	PWY-6999	theophylline degradation
Alide_1091	PWY-1042	glycolysis IV (plant cytosol)
Alide_1091	PWY-1622	formaldehyde assimilation I (serine pathway)
Alide_1091	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Alide_1091	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide_1091	PWY-5723	Rubisco shunt
Alide_1091	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Alide_1091	PWY-6886	1-butanol autotrophic biosynthesis
Alide_1091	PWY-6901	superpathway of glucose and xylose degradation
Alide_1091	PWY-7003	glycerol degradation to butanol
Alide_1091	PWY-7124	ethylene biosynthesis V (engineered)
Alide_1091	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Alide_1093	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Alide_1093	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Alide_1094	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Alide_1094	PWY-7177	UTP and CTP dephosphorylation II
Alide_1094	PWY-7185	UTP and CTP dephosphorylation I
Alide_1097	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Alide_1097	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide_1097	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide_1097	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Alide_1102	PWY-2941	L-lysine biosynthesis II
Alide_1102	PWY-2942	L-lysine biosynthesis III
Alide_1102	PWY-5097	L-lysine biosynthesis VI
Alide_1116	PWY-6891	thiazole biosynthesis II (Bacillus)
Alide_1116	PWY-6892	thiazole biosynthesis I (E. coli)
Alide_1116	PWY-7560	methylerythritol phosphate pathway II
Alide_1121	PWY-2301	<i>myo</i>-inositol biosynthesis
Alide_1121	PWY-4702	phytate degradation I
Alide_1121	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
Alide_1123	PWY-6936	seleno-amino acid biosynthesis
Alide_1123	PWY-7274	D-cycloserine biosynthesis
Alide_1141	PWY-5392	reductive TCA cycle II
Alide_1141	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Alide_1141	PWY-5690	TCA cycle II (plants and fungi)
Alide_1141	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide_1141	PWY-6728	methylaspartate cycle
Alide_1141	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_1141	PWY-7254	TCA cycle VII (acetate-producers)
Alide_1141	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide_1142	PWY-5392	reductive TCA cycle II
Alide_1142	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Alide_1142	PWY-5690	TCA cycle II (plants and fungi)
Alide_1142	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide_1142	PWY-6728	methylaspartate cycle
Alide_1142	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_1142	PWY-7254	TCA cycle VII (acetate-producers)
Alide_1142	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide_1147	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Alide_1147	PWY-7118	chitin degradation to ethanol
Alide_1178	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Alide_1178	PWY-6167	flavin biosynthesis II (archaea)
Alide_1178	PWY-6168	flavin biosynthesis III (fungi)
Alide_1183	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Alide_1183	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Alide_1205	PWY-6829	tRNA methylation (yeast)
Alide_1205	PWY-7285	methylwyosine biosynthesis
Alide_1205	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Alide_1212	PWY-7158	L-phenylalanine degradation V
Alide_1291	PWY-702	L-methionine biosynthesis II
Alide_1310	PWY-7560	methylerythritol phosphate pathway II
Alide_1311	PWY-7560	methylerythritol phosphate pathway II
Alide_1325	PWY-6871	3-methylbutanol biosynthesis
Alide_1328	PWY-6654	phosphopantothenate biosynthesis III
Alide_1355	PWY-2781	<i>cis</i>-zeatin biosynthesis
Alide_1372	PWY-5692	allantoin degradation to glyoxylate II
Alide_1372	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
Alide_1373	PWY-6610	adenine and adenosine salvage IV
Alide_1381	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Alide_1381	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Alide_1389	PWY-4981	L-proline biosynthesis II (from arginine)
Alide_1389	PWY-4984	urea cycle
Alide_1389	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Alide_1399	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Alide_1399	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Alide_1399	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Alide_1400	PWY-4041	&gamma;-glutamyl cycle
Alide_1400	PWY-5826	hypoglycin biosynthesis
Alide_1404	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Alide_1404	PWY-6148	tetrahydromethanopterin biosynthesis
Alide_1404	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Alide_1404	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Alide_1411	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Alide_1411	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Alide_1450	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide_1461	PWY-6938	NADH repair
Alide_1463	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Alide_1470	PWY-7560	methylerythritol phosphate pathway II
Alide_1475	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Alide_1475	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Alide_1475	PWY-5989	stearate biosynthesis II (bacteria and plants)
Alide_1475	PWY-5994	palmitate biosynthesis I (animals and fungi)
Alide_1475	PWY-6113	superpathway of mycolate biosynthesis
Alide_1475	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Alide_1475	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Alide_1475	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide_1475	PWYG-321	mycolate biosynthesis
Alide_1484	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide_1487	PWY-2942	L-lysine biosynthesis III
Alide_1498	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide_1498	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide_1501	PWY-6703	preQ<sub>0</sub> biosynthesis
Alide_1506	PWY-4983	L-citrulline-nitric oxide cycle
Alide_1506	PWY-4984	urea cycle
Alide_1506	PWY-5	canavanine biosynthesis
Alide_1506	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide_1506	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Alide_1510	PWY-2161	folate polyglutamylation
Alide_1513	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Alide_1513	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Alide_1513	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Alide_1513	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Alide_1515	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Alide_1535	PWY-5381	pyridine nucleotide cycling (plants)
Alide_1563	PWY-1361	benzoyl-CoA degradation I (aerobic)
Alide_1563	PWY-5109	2-methylbutanoate biosynthesis
Alide_1563	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Alide_1563	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Alide_1563	PWY-5177	glutaryl-CoA degradation
Alide_1563	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide_1563	PWY-6435	4-hydroxybenzoate biosynthesis V
Alide_1563	PWY-6583	pyruvate fermentation to butanol I
Alide_1563	PWY-6863	pyruvate fermentation to hexanol
Alide_1563	PWY-6883	pyruvate fermentation to butanol II
Alide_1563	PWY-6944	androstenedione degradation
Alide_1563	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Alide_1563	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Alide_1563	PWY-7007	methyl ketone biosynthesis
Alide_1563	PWY-7046	4-coumarate degradation (anaerobic)
Alide_1563	PWY-7094	fatty acid salvage
Alide_1563	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Alide_1563	PWY-735	jasmonic acid biosynthesis
Alide_1563	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Alide_1591	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Alide_1591	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Alide_1622	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Alide_1622	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide_1622	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide_1622	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Alide_1622	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Alide_1622	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Alide_1728	PWY-5386	methylglyoxal degradation I
Alide_1740	PWY-6823	molybdenum cofactor biosynthesis
Alide_1742	PWY-5964	guanylyl molybdenum cofactor biosynthesis
Alide_1743	PWY-6823	molybdenum cofactor biosynthesis
Alide_1753	PWY-5381	pyridine nucleotide cycling (plants)
Alide_1753	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Alide_1756	PWY-7039	phosphatidate metabolism, as a signaling molecule
Alide_1761	PWY-5101	L-isoleucine biosynthesis II
Alide_1761	PWY-5103	L-isoleucine biosynthesis III
Alide_1761	PWY-5104	L-isoleucine biosynthesis IV
Alide_1761	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Alide_1761	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Alide_1761	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Alide_1761	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Alide_1762	PWY-5101	L-isoleucine biosynthesis II
Alide_1762	PWY-5103	L-isoleucine biosynthesis III
Alide_1762	PWY-5104	L-isoleucine biosynthesis IV
Alide_1762	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Alide_1762	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Alide_1762	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Alide_1762	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Alide_1763	PWY-5101	L-isoleucine biosynthesis II
Alide_1763	PWY-5103	L-isoleucine biosynthesis III
Alide_1763	PWY-5104	L-isoleucine biosynthesis IV
Alide_1763	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Alide_1764	PWY-5669	phosphatidylethanolamine biosynthesis I
Alide_1770	PWY-6871	3-methylbutanol biosynthesis
Alide_1771	PWY-6871	3-methylbutanol biosynthesis
Alide_1775	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
Alide_1775	PWY-6853	ethylene biosynthesis II (microbes)
Alide_1775	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Alide_1780	PWY-1361	benzoyl-CoA degradation I (aerobic)
Alide_1780	PWY-5109	2-methylbutanoate biosynthesis
Alide_1780	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Alide_1780	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Alide_1780	PWY-5177	glutaryl-CoA degradation
Alide_1780	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide_1780	PWY-6435	4-hydroxybenzoate biosynthesis V
Alide_1780	PWY-6583	pyruvate fermentation to butanol I
Alide_1780	PWY-6863	pyruvate fermentation to hexanol
Alide_1780	PWY-6883	pyruvate fermentation to butanol II
Alide_1780	PWY-6944	androstenedione degradation
Alide_1780	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Alide_1780	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Alide_1780	PWY-7007	methyl ketone biosynthesis
Alide_1780	PWY-7046	4-coumarate degradation (anaerobic)
Alide_1780	PWY-7094	fatty acid salvage
Alide_1780	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Alide_1780	PWY-735	jasmonic acid biosynthesis
Alide_1780	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Alide_1782	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Alide_1782	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Alide_1782	PWY-6897	thiamin salvage II
Alide_1782	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Alide_1782	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Alide_1782	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Alide_1782	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Alide_1783	PWY-6891	thiazole biosynthesis II (Bacillus)
Alide_1783	PWY-6892	thiazole biosynthesis I (E. coli)
Alide_1786	PWY-6910	hydroxymethylpyrimidine salvage
Alide_1786	PWY-7356	thiamin salvage IV (yeast)
Alide_1786	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Alide_1789	PWY-101	photosynthesis light reactions
Alide_1789	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Alide_1791	PWY-5278	sulfite oxidation III
Alide_1791	PWY-5340	sulfate activation for sulfonation
Alide_1791	PWY-6683	sulfate reduction III (assimilatory)
Alide_1791	PWY-6932	selenate reduction
Alide_1792	PWY-5278	sulfite oxidation III
Alide_1792	PWY-5340	sulfate activation for sulfonation
Alide_1792	PWY-6683	sulfate reduction III (assimilatory)
Alide_1792	PWY-6932	selenate reduction
Alide_1795	PWY-6683	sulfate reduction III (assimilatory)
Alide_1844	PWY-5669	phosphatidylethanolamine biosynthesis I
Alide_1851	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Alide_1851	PWY-7205	CMP phosphorylation
Alide_1853	PWY-3461	L-tyrosine biosynthesis II
Alide_1853	PWY-3462	L-phenylalanine biosynthesis II
Alide_1853	PWY-6120	L-tyrosine biosynthesis III
Alide_1853	PWY-6627	salinosporamide A biosynthesis
Alide_1853	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Alide_1857	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
Alide_1857	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
Alide_1857	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
Alide_1857	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
Alide_1857	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
Alide_1857	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
Alide_1857	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
Alide_1857	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
Alide_1857	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Alide_1857	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
Alide_1858	PWY-181	photorespiration
Alide_1896	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Alide_1896	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Alide_1896	PWY-6936	seleno-amino acid biosynthesis
Alide_1896	PWY-702	L-methionine biosynthesis II
Alide_1925	PWY-5344	L-homocysteine biosynthesis
Alide_1925	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Alide_1927	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Alide_1929	PWY-1622	formaldehyde assimilation I (serine pathway)
Alide_1929	PWY-181	photorespiration
Alide_1929	PWY-2161	folate polyglutamylation
Alide_1929	PWY-2201	folate transformations I
Alide_1929	PWY-3661	glycine betaine degradation I
Alide_1929	PWY-3661-1	glycine betaine degradation II (mammalian)
Alide_1929	PWY-3841	folate transformations II
Alide_1929	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide_1953	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Alide_1953	PWY-6596	adenosine nucleotides degradation I
Alide_1953	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Alide_1954	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Alide_1958	PWY-3781	aerobic respiration I (cytochrome c)
Alide_1958	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Alide_1958	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Alide_1958	PWY-5690	TCA cycle II (plants and fungi)
Alide_1958	PWY-6728	methylaspartate cycle
Alide_1958	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_1958	PWY-7254	TCA cycle VII (acetate-producers)
Alide_1958	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide_1959	PWY-3781	aerobic respiration I (cytochrome c)
Alide_1959	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Alide_1959	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Alide_1959	PWY-5690	TCA cycle II (plants and fungi)
Alide_1959	PWY-6728	methylaspartate cycle
Alide_1959	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_1959	PWY-7254	TCA cycle VII (acetate-producers)
Alide_1959	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide_1963	PWY-1622	formaldehyde assimilation I (serine pathway)
Alide_1963	PWY-5392	reductive TCA cycle II
Alide_1963	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Alide_1963	PWY-5690	TCA cycle II (plants and fungi)
Alide_1963	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide_1963	PWY-6728	methylaspartate cycle
Alide_1963	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_1963	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Alide_1963	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Alide_1966	PWY-5747	2-methylcitrate cycle II
Alide_1971	PWY-4081	glutathione redox reactions I
Alide_1994	PWY-3781	aerobic respiration I (cytochrome c)
Alide_1994	PWY-4521	arsenite oxidation I (respiratory)
Alide_1994	PWY-6692	Fe(II) oxidation
Alide_1994	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide_1994	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
Alide_2003	PWY-6167	flavin biosynthesis II (archaea)
Alide_2003	PWY-6168	flavin biosynthesis III (fungi)
Alide_2004	PWY-6167	flavin biosynthesis II (archaea)
Alide_2004	PWY-6168	flavin biosynthesis III (fungi)
Alide_2004	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Alide_2008	PWY-6840	homoglutathione biosynthesis
Alide_2008	PWY-7255	ergothioneine biosynthesis I (bacteria)
Alide_2027	PWY-5392	reductive TCA cycle II
Alide_2027	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Alide_2027	PWY-5690	TCA cycle II (plants and fungi)
Alide_2027	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide_2027	PWY-6728	methylaspartate cycle
Alide_2027	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_2027	PWY-7254	TCA cycle VII (acetate-producers)
Alide_2027	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide_2030	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Alide_2032	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Alide_2032	PWY-6416	quinate degradation II
Alide_2032	PWY-6707	gallate biosynthesis
Alide_2039	PWY-6891	thiazole biosynthesis II (Bacillus)
Alide_2039	PWY-6892	thiazole biosynthesis I (E. coli)
Alide_2039	PWY-7560	methylerythritol phosphate pathway II
Alide_2040	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Alide_2121	PWY-4381	fatty acid biosynthesis initiation I
Alide_2121	PWY-5743	3-hydroxypropanoate cycle
Alide_2121	PWY-5744	glyoxylate assimilation
Alide_2121	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide_2121	PWY-6679	jadomycin biosynthesis
Alide_2121	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide_2123	PWY-2941	L-lysine biosynthesis II
Alide_2123	PWY-2942	L-lysine biosynthesis III
Alide_2123	PWY-5097	L-lysine biosynthesis VI
Alide_2123	PWY-6559	spermidine biosynthesis II
Alide_2123	PWY-6562	norspermidine biosynthesis
Alide_2123	PWY-7153	grixazone biosynthesis
Alide_2136	PWY-7183	pyrimidine nucleobases salvage I
Alide_2150	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Alide_2150	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Alide_2150	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Alide_2151	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Alide_2151	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Alide_2163	PWY-5194	siroheme biosynthesis
Alide_2163	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Alide_2169	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Alide_2172	PWY-5988	wound-induced proteolysis I
Alide_2172	PWY-6018	seed germination protein turnover
Alide_2205	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide_2205	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
Alide_2205	PWY-6638	sulfolactate degradation III
Alide_2205	PWY-6642	(<i>R</i>)-cysteate degradation
Alide_2205	PWY-6643	coenzyme M biosynthesis II
Alide_2205	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Alide_2205	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Alide_2205	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Alide_2208	PWY-6823	molybdenum cofactor biosynthesis
Alide_2208	PWY-6891	thiazole biosynthesis II (Bacillus)
Alide_2208	PWY-6892	thiazole biosynthesis I (E. coli)
Alide_2208	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Alide_2219	PWY-5686	UMP biosynthesis
Alide_2220	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Alide_2220	PWY-5723	Rubisco shunt
Alide_2223	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Alide_2223	PWY-2201	folate transformations I
Alide_2223	PWY-3841	folate transformations II
Alide_2223	PWY-5030	L-histidine degradation III
Alide_2223	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide_2223	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Alide_2226	PWY-6891	thiazole biosynthesis II (Bacillus)
Alide_2226	PWY-6892	thiazole biosynthesis I (E. coli)
Alide_2226	PWY-7560	methylerythritol phosphate pathway II
Alide_2228	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Alide_2228	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Alide_2263	PWY-5676	acetyl-CoA fermentation to butanoate II
Alide_2263	PWY-5741	ethylmalonyl-CoA pathway
Alide_2263	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Alide_2287	PWY-5743	3-hydroxypropanoate cycle
Alide_2287	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide_2287	PWY-6728	methylaspartate cycle
Alide_2287	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide_2289	PWY-4381	fatty acid biosynthesis initiation I
Alide_2289	PWY-5743	3-hydroxypropanoate cycle
Alide_2289	PWY-5744	glyoxylate assimilation
Alide_2289	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide_2289	PWY-6679	jadomycin biosynthesis
Alide_2289	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide_2292	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Alide_2336	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Alide_2337	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Alide_2337	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Alide_2351	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Alide_2351	PWY-3162	L-tryptophan degradation V (side chain pathway)
Alide_2351	PWY-5057	L-valine degradation II
Alide_2351	PWY-5076	L-leucine degradation III
Alide_2351	PWY-5078	L-isoleucine degradation II
Alide_2351	PWY-5079	L-phenylalanine degradation III
Alide_2351	PWY-5082	L-methionine degradation III
Alide_2351	PWY-5480	pyruvate fermentation to ethanol I
Alide_2351	PWY-5486	pyruvate fermentation to ethanol II
Alide_2351	PWY-5751	phenylethanol biosynthesis
Alide_2351	PWY-6028	acetoin degradation
Alide_2351	PWY-6313	serotonin degradation
Alide_2351	PWY-6333	acetaldehyde biosynthesis I
Alide_2351	PWY-6342	noradrenaline and adrenaline degradation
Alide_2351	PWY-6587	pyruvate fermentation to ethanol III
Alide_2351	PWY-6802	salidroside biosynthesis
Alide_2351	PWY-6871	3-methylbutanol biosynthesis
Alide_2351	PWY-7013	L-1,2-propanediol degradation
Alide_2351	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Alide_2351	PWY-7118	chitin degradation to ethanol
Alide_2351	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Alide_2351	PWY-7557	dehydrodiconiferyl alcohol degradation
Alide_2352	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Alide_2358	PWY-723	alkylnitronates degradation
Alide_2369	PWY-6891	thiazole biosynthesis II (Bacillus)
Alide_2369	PWY-6892	thiazole biosynthesis I (E. coli)
Alide_2369	PWY-7560	methylerythritol phosphate pathway II
Alide_2375	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Alide_2375	PWY-5723	Rubisco shunt
Alide_2375	PWY-6891	thiazole biosynthesis II (Bacillus)
Alide_2375	PWY-6892	thiazole biosynthesis I (E. coli)
Alide_2375	PWY-6901	superpathway of glucose and xylose degradation
Alide_2375	PWY-7560	methylerythritol phosphate pathway II
Alide_2391	PWY-6683	sulfate reduction III (assimilatory)
Alide_2397	PWY-5194	siroheme biosynthesis
Alide_2397	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Alide_2406	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Alide_2406	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Alide_2416	PWY-5392	reductive TCA cycle II
Alide_2416	PWY-5537	pyruvate fermentation to acetate V
Alide_2416	PWY-5538	pyruvate fermentation to acetate VI
Alide_2416	PWY-5690	TCA cycle II (plants and fungi)
Alide_2416	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide_2416	PWY-6728	methylaspartate cycle
Alide_2416	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_2416	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide_2420	PWY-6823	molybdenum cofactor biosynthesis
Alide_2420	PWY-6891	thiazole biosynthesis II (Bacillus)
Alide_2420	PWY-6892	thiazole biosynthesis I (E. coli)
Alide_2420	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Alide_2431	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide_2434	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide_2434	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide_2441	PWY-2941	L-lysine biosynthesis II
Alide_2441	PWY-2942	L-lysine biosynthesis III
Alide_2441	PWY-5097	L-lysine biosynthesis VI
Alide_2462	PWY-5381	pyridine nucleotide cycling (plants)
Alide_2480	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Alide_2496	PWY-6749	CMP-legionaminate biosynthesis I
Alide_2497	PWY-6614	tetrahydrofolate biosynthesis
Alide_2504	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide_2504	PWY-5686	UMP biosynthesis
Alide_2504	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Alide_2505	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide_2505	PWY-5686	UMP biosynthesis
Alide_2505	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Alide_2516	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_2535	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Alide_2551	PWY-3941	&beta;-alanine biosynthesis II
Alide_2551	PWY-5104	L-isoleucine biosynthesis IV
Alide_2551	PWY-5747	2-methylcitrate cycle II
Alide_2555	PWY-5642	2,4-dinitrotoluene degradation
Alide_2555	PWY-6373	acrylate degradation
Alide_2564	PWY-6497	D-galactarate degradation II
Alide_2569	PWY-6497	D-galactarate degradation II
Alide_2569	PWY-6499	D-glucarate degradation II
Alide_2590	PWY-5392	reductive TCA cycle II
Alide_2590	PWY-5537	pyruvate fermentation to acetate V
Alide_2590	PWY-5538	pyruvate fermentation to acetate VI
Alide_2590	PWY-5690	TCA cycle II (plants and fungi)
Alide_2590	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide_2590	PWY-6728	methylaspartate cycle
Alide_2590	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_2590	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide_2592	PWY-6749	CMP-legionaminate biosynthesis I
Alide_2595	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Alide_2606	PWY-5344	L-homocysteine biosynthesis
Alide_2606	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Alide_2611	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Alide_2611	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Alide_2611	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Alide_2620	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide_2620	PWY-6549	L-glutamine biosynthesis III
Alide_2620	PWY-6728	methylaspartate cycle
Alide_2620	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_2620	PWY-7124	ethylene biosynthesis V (engineered)
Alide_2620	PWY-7254	TCA cycle VII (acetate-producers)
Alide_2620	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Alide_2622	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide_2622	PWY-6549	L-glutamine biosynthesis III
Alide_2622	PWY-6728	methylaspartate cycle
Alide_2622	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_2622	PWY-7124	ethylene biosynthesis V (engineered)
Alide_2622	PWY-7254	TCA cycle VII (acetate-producers)
Alide_2622	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Alide_2623	PWY-6854	ethylene biosynthesis III (microbes)
Alide_2629	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Alide_2629	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Alide_2630	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Alide_2642	PWY-5386	methylglyoxal degradation I
Alide_2647	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
Alide_2648	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
Alide_2653	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Alide_2653	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Alide_2653	PWY-7242	D-fructuronate degradation
Alide_2653	PWY-7310	D-glucosaminate degradation
Alide_2654	PWY-5101	L-isoleucine biosynthesis II
Alide_2654	PWY-5103	L-isoleucine biosynthesis III
Alide_2654	PWY-5104	L-isoleucine biosynthesis IV
Alide_2654	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Alide_2658	PWY-5530	sorbitol biosynthesis II
Alide_2658	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Alide_2668	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Alide_2668	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Alide_2669	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Alide_2670	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Alide_2680	PWY-6825	phosphatidylcholine biosynthesis V
Alide_2682	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Alide_2682	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Alide_2682	PWY-5989	stearate biosynthesis II (bacteria and plants)
Alide_2682	PWY-6113	superpathway of mycolate biosynthesis
Alide_2682	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Alide_2682	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Alide_2682	PWY-7096	triclosan resistance
Alide_2682	PWYG-321	mycolate biosynthesis
Alide_2734	PWY-6825	phosphatidylcholine biosynthesis V
Alide_2767	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide_2767	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide_2770	PWY-5028	L-histidine degradation II
Alide_2770	PWY-5030	L-histidine degradation III
Alide_2776	PWY-5028	L-histidine degradation II
Alide_2776	PWY-5030	L-histidine degradation III
Alide_2779	PWY-5028	L-histidine degradation II
Alide_2779	PWY-5030	L-histidine degradation III
Alide_2797	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide_2804	PWY-5506	methanol oxidation to formaldehyde IV
Alide_2810	PWY-1622	formaldehyde assimilation I (serine pathway)
Alide_2810	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Alide_2810	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide_2810	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Alide_2810	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Alide_2810	PWY-6549	L-glutamine biosynthesis III
Alide_2810	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Alide_2810	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Alide_2810	PWY-7124	ethylene biosynthesis V (engineered)
Alide_2811	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Alide_2811	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Alide_2812	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Alide_2812	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Alide_2815	PWY-3781	aerobic respiration I (cytochrome c)
Alide_2815	PWY-4521	arsenite oxidation I (respiratory)
Alide_2815	PWY-6692	Fe(II) oxidation
Alide_2815	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide_2821	PWY-3801	sucrose degradation II (sucrose synthase)
Alide_2821	PWY-6527	stachyose degradation
Alide_2821	PWY-6981	chitin biosynthesis
Alide_2821	PWY-7238	sucrose biosynthesis II
Alide_2821	PWY-7343	UDP-glucose biosynthesis
Alide_2824	PWY-6936	seleno-amino acid biosynthesis
Alide_2841	PWY-1281	sulfoacetaldehyde degradation I
Alide_2841	PWY-5482	pyruvate fermentation to acetate II
Alide_2841	PWY-5485	pyruvate fermentation to acetate IV
Alide_2841	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide_2841	PWY-6637	sulfolactate degradation II
Alide_2843	PWY-5676	acetyl-CoA fermentation to butanoate II
Alide_2843	PWY-5741	ethylmalonyl-CoA pathway
Alide_2843	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Alide_2859	PWY-5482	pyruvate fermentation to acetate II
Alide_2859	PWY-5485	pyruvate fermentation to acetate IV
Alide_2859	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide_2888	PWY-4381	fatty acid biosynthesis initiation I
Alide_2888	PWY-5743	3-hydroxypropanoate cycle
Alide_2888	PWY-5744	glyoxylate assimilation
Alide_2888	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide_2888	PWY-6679	jadomycin biosynthesis
Alide_2888	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide_2894	PWY-5269	cardiolipin biosynthesis II
Alide_2894	PWY-5668	cardiolipin biosynthesis I
Alide_2946	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Alide_2946	PWY-7494	choline degradation IV
Alide_2978	PWY-2582	brassinosteroid biosynthesis II
Alide_2978	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Alide_2978	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Alide_2978	PWY-6948	sitosterol degradation to androstenedione
Alide_2978	PWY-699	brassinosteroid biosynthesis I
Alide_2978	PWY-7299	progesterone biosynthesis
Alide_2999	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide_2999	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide_3000	PWY-3841	folate transformations II
Alide_3000	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide_3000	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide_3000	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Alide_3000	PWY-7199	pyrimidine deoxyribonucleosides salvage
Alide_3000	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Alide_3001	PWY-3841	folate transformations II
Alide_3001	PWY-6614	tetrahydrofolate biosynthesis
Alide_3018	PWY-381	nitrate reduction II (assimilatory)
Alide_3018	PWY-5675	nitrate reduction V (assimilatory)
Alide_3018	PWY-6549	L-glutamine biosynthesis III
Alide_3018	PWY-6963	ammonia assimilation cycle I
Alide_3018	PWY-6964	ammonia assimilation cycle II
Alide_3026	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Alide_3037	PWY-7560	methylerythritol phosphate pathway II
Alide_3041	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Alide_3041	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Alide_3041	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide_3041	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide_3041	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Alide_3041	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Alide_3041	PWY-7205	CMP phosphorylation
Alide_3041	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Alide_3041	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide_3041	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Alide_3041	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide_3041	PWY-7224	purine deoxyribonucleosides salvage
Alide_3041	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide_3041	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Alide_3047	PWY-5381	pyridine nucleotide cycling (plants)
Alide_3047	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Alide_3047	PWY-6596	adenosine nucleotides degradation I
Alide_3047	PWY-6606	guanosine nucleotides degradation II
Alide_3047	PWY-6607	guanosine nucleotides degradation I
Alide_3047	PWY-6608	guanosine nucleotides degradation III
Alide_3047	PWY-7185	UTP and CTP dephosphorylation I
Alide_3077	PWY-6748	nitrate reduction VII (denitrification)
Alide_3077	PWY-7084	nitrifier denitrification
Alide_3086	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide_3090	PWY-5691	urate degradation to allantoin I
Alide_3090	PWY-7394	urate degradation to allantoin II
Alide_3091	PWY-4041	&gamma;-glutamyl cycle
Alide_3091	PWY-5826	hypoglycin biosynthesis
Alide_3107	PWY-5691	urate degradation to allantoin I
Alide_3107	PWY-7394	urate degradation to allantoin II
Alide_3112	PWY-1281	sulfoacetaldehyde degradation I
Alide_3112	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Alide_3112	PWY-5482	pyruvate fermentation to acetate II
Alide_3112	PWY-5485	pyruvate fermentation to acetate IV
Alide_3112	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide_3112	PWY-6637	sulfolactate degradation II
Alide_3112	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Alide_3142	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Alide_3143	PWY-2941	L-lysine biosynthesis II
Alide_3143	PWY-2942	L-lysine biosynthesis III
Alide_3143	PWY-5097	L-lysine biosynthesis VI
Alide_3143	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide_3143	PWY-6559	spermidine biosynthesis II
Alide_3143	PWY-6562	norspermidine biosynthesis
Alide_3143	PWY-7153	grixazone biosynthesis
Alide_3143	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Alide_3149	PWY-4381	fatty acid biosynthesis initiation I
Alide_3149	PWY-5743	3-hydroxypropanoate cycle
Alide_3149	PWY-5744	glyoxylate assimilation
Alide_3149	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide_3149	PWY-6679	jadomycin biosynthesis
Alide_3149	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide_3167	PWY-1042	glycolysis IV (plant cytosol)
Alide_3167	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Alide_3167	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide_3167	PWY-7385	1,3-propanediol biosynthesis (engineered)
Alide_3168	PWY-6902	chitin degradation II
Alide_3169	PWY-6012	acyl carrier protein metabolism I
Alide_3169	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Alide_3184	PWY-5367	petroselinate biosynthesis
Alide_3184	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Alide_3184	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Alide_3184	PWY-5989	stearate biosynthesis II (bacteria and plants)
Alide_3184	PWY-5994	palmitate biosynthesis I (animals and fungi)
Alide_3184	PWY-6113	superpathway of mycolate biosynthesis
Alide_3184	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Alide_3184	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Alide_3184	PWY-6951	Alide_3184
Alide_3184	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Alide_3184	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide_3184	PWYG-321	mycolate biosynthesis
Alide_3185	PWY-4381	fatty acid biosynthesis initiation I
Alide_3185	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Alide_3185	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide_3186	PWY-4381	fatty acid biosynthesis initiation I
Alide_3199	PWY-6700	queuosine biosynthesis
Alide_3215	PWY-5392	reductive TCA cycle II
Alide_3215	PWY-5537	pyruvate fermentation to acetate V
Alide_3215	PWY-5538	pyruvate fermentation to acetate VI
Alide_3215	PWY-5690	TCA cycle II (plants and fungi)
Alide_3215	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide_3215	PWY-6728	methylaspartate cycle
Alide_3215	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_3215	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide_3223	PWY-4983	L-citrulline-nitric oxide cycle
Alide_3223	PWY-4984	urea cycle
Alide_3223	PWY-5	canavanine biosynthesis
Alide_3223	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide_3223	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Alide_3239	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Alide_3243	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Alide_3243	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Alide_3243	PWY-6269	adenosylcobalamin salvage from cobinamide II
Alide_3261	PWY-6823	molybdenum cofactor biosynthesis
Alide_3265	PWY-2941	L-lysine biosynthesis II
Alide_3265	PWY-2942	L-lysine biosynthesis III
Alide_3265	PWY-5097	L-lysine biosynthesis VI
Alide_3267	PWY-6823	molybdenum cofactor biosynthesis
Alide_3286	PWY-5392	reductive TCA cycle II
Alide_3286	PWY-5537	pyruvate fermentation to acetate V
Alide_3286	PWY-5538	pyruvate fermentation to acetate VI
Alide_3286	PWY-5690	TCA cycle II (plants and fungi)
Alide_3286	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide_3286	PWY-6728	methylaspartate cycle
Alide_3286	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_3286	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide_3290	PWY-1361	benzoyl-CoA degradation I (aerobic)
Alide_3290	PWY-5109	2-methylbutanoate biosynthesis
Alide_3290	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Alide_3290	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Alide_3290	PWY-5177	glutaryl-CoA degradation
Alide_3290	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide_3290	PWY-6435	4-hydroxybenzoate biosynthesis V
Alide_3290	PWY-6583	pyruvate fermentation to butanol I
Alide_3290	PWY-6863	pyruvate fermentation to hexanol
Alide_3290	PWY-6883	pyruvate fermentation to butanol II
Alide_3290	PWY-6944	androstenedione degradation
Alide_3290	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Alide_3290	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Alide_3290	PWY-7007	methyl ketone biosynthesis
Alide_3290	PWY-7046	4-coumarate degradation (anaerobic)
Alide_3290	PWY-7094	fatty acid salvage
Alide_3290	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Alide_3290	PWY-735	jasmonic acid biosynthesis
Alide_3290	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Alide_3308	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Alide_3308	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Alide_3308	PWY-6268	adenosylcobalamin salvage from cobalamin
Alide_3308	PWY-6269	adenosylcobalamin salvage from cobinamide II
Alide_3312	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Alide_3312	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Alide_3312	PWY-6269	adenosylcobalamin salvage from cobinamide II
Alide_3327	PWY-3781	aerobic respiration I (cytochrome c)
Alide_3327	PWY-4521	arsenite oxidation I (respiratory)
Alide_3327	PWY-6692	Fe(II) oxidation
Alide_3327	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide_3328	PWY-3781	aerobic respiration I (cytochrome c)
Alide_3328	PWY-4521	arsenite oxidation I (respiratory)
Alide_3328	PWY-6692	Fe(II) oxidation
Alide_3328	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide_3340	PWY-5101	L-isoleucine biosynthesis II
Alide_3340	PWY-5103	L-isoleucine biosynthesis III
Alide_3340	PWY-5104	L-isoleucine biosynthesis IV
Alide_3340	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Alide_3341	PWY-5101	L-isoleucine biosynthesis II
Alide_3341	PWY-5103	L-isoleucine biosynthesis III
Alide_3341	PWY-5104	L-isoleucine biosynthesis IV
Alide_3341	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Alide_3360	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Alide_3363	PWY-7560	methylerythritol phosphate pathway II
Alide_3389	PWY-1881	formate oxidation to CO<sub>2</sub>
Alide_3389	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide_3389	PWY-6696	oxalate degradation III
Alide_3401	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Alide_3409	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Alide_3420	PWY-5316	nicotine biosynthesis
Alide_3420	PWY-7342	superpathway of nicotine biosynthesis
Alide_3422	PWY-5958	acridone alkaloid biosynthesis
Alide_3422	PWY-6543	4-aminobenzoate biosynthesis
Alide_3422	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Alide_3422	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Alide_3422	PWY-6722	candicidin biosynthesis
Alide_3423	PWY-5316	nicotine biosynthesis
Alide_3423	PWY-7342	superpathway of nicotine biosynthesis
Alide_3424	PWY-5316	nicotine biosynthesis
Alide_3424	PWY-5381	pyridine nucleotide cycling (plants)
Alide_3424	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Alide_3424	PWY-7342	superpathway of nicotine biosynthesis
Alide_3426	PWY-6654	phosphopantothenate biosynthesis III
Alide_3434	PWY-5667	CDP-diacylglycerol biosynthesis I
Alide_3434	PWY-5981	CDP-diacylglycerol biosynthesis III
Alide_3438	PWY-1622	formaldehyde assimilation I (serine pathway)
Alide_3438	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide_3487	PWY-3781	aerobic respiration I (cytochrome c)
Alide_3487	PWY-4521	arsenite oxidation I (respiratory)
Alide_3487	PWY-6692	Fe(II) oxidation
Alide_3487	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide_3512	PWY-1361	benzoyl-CoA degradation I (aerobic)
Alide_3512	PWY-2361	3-oxoadipate degradation
Alide_3512	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
Alide_3609	PWY-3781	aerobic respiration I (cytochrome c)
Alide_3609	PWY-4521	arsenite oxidation I (respiratory)
Alide_3609	PWY-6692	Fe(II) oxidation
Alide_3609	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide_3614	PWY-3781	aerobic respiration I (cytochrome c)
Alide_3614	PWY-4521	arsenite oxidation I (respiratory)
Alide_3614	PWY-6692	Fe(II) oxidation
Alide_3614	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide_3620	PWY-4202	arsenate detoxification I (glutaredoxin)
Alide_3620	PWY-4621	arsenate detoxification II (glutaredoxin)
Alide_3624	PWY-5686	UMP biosynthesis
Alide_3625	PWY-5686	UMP biosynthesis
Alide_3636	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Alide_3637	PWY-6123	inosine-5'-phosphate biosynthesis I
Alide_3637	PWY-6124	inosine-5'-phosphate biosynthesis II
Alide_3637	PWY-7234	inosine-5'-phosphate biosynthesis III
Alide_3661	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Alide_3661	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide_3661	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Alide_3661	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Alide_3661	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide_3661	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide_3661	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide_3661	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Alide_3662	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Alide_3662	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide_3662	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Alide_3662	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Alide_3662	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide_3662	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide_3662	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide_3662	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Alide_3673	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Alide_3673	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Alide_3673	PWY-6164	3-dehydroquinate biosynthesis I
Alide_3683	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Alide_3691	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Alide_3695	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Alide_3695	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Alide_3704	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide_3704	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide_3705	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide_3705	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide_3706	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Alide_3706	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Alide_3706	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Alide_3706	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Alide_3708	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide_3708	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide_3709	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Alide_3709	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Alide_3709	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Alide_3710	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide_3710	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide_3733	PWY-2941	L-lysine biosynthesis II
Alide_3733	PWY-5097	L-lysine biosynthesis VI
Alide_3737	PWY-6936	seleno-amino acid biosynthesis
Alide_3749	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Alide_3749	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Alide_3754	PWY-723	alkylnitronates degradation
Alide_3762	PWY-1361	benzoyl-CoA degradation I (aerobic)
Alide_3762	PWY-5109	2-methylbutanoate biosynthesis
Alide_3762	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Alide_3762	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Alide_3762	PWY-5177	glutaryl-CoA degradation
Alide_3762	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide_3762	PWY-6435	4-hydroxybenzoate biosynthesis V
Alide_3762	PWY-6583	pyruvate fermentation to butanol I
Alide_3762	PWY-6863	pyruvate fermentation to hexanol
Alide_3762	PWY-6883	pyruvate fermentation to butanol II
Alide_3762	PWY-6944	androstenedione degradation
Alide_3762	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Alide_3762	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Alide_3762	PWY-7007	methyl ketone biosynthesis
Alide_3762	PWY-7046	4-coumarate degradation (anaerobic)
Alide_3762	PWY-7094	fatty acid salvage
Alide_3762	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Alide_3762	PWY-735	jasmonic acid biosynthesis
Alide_3762	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Alide_3779	PWY-5686	UMP biosynthesis
Alide_3795	PWY-5074	mevalonate degradation
Alide_3800	PWY-4381	fatty acid biosynthesis initiation I
Alide_3800	PWY-5743	3-hydroxypropanoate cycle
Alide_3800	PWY-5744	glyoxylate assimilation
Alide_3800	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide_3800	PWY-6679	jadomycin biosynthesis
Alide_3800	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide_3804	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Alide_3804	PWY-7494	choline degradation IV
Alide_3809	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Alide_3809	PWY-7494	choline degradation IV
Alide_3812	PWY-6174	mevalonate pathway II (archaea)
Alide_3812	PWY-7391	isoprene biosynthesis II (engineered)
Alide_3812	PWY-7524	mevalonate pathway III (archaea)
Alide_3812	PWY-922	mevalonate pathway I
Alide_3832	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Alide_3832	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Alide_3832	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Alide_3832	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Alide_3854	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Alide_3865	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Alide_3865	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Alide_3890	PWY-723	alkylnitronates degradation
Alide_3897	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Alide_3897	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Alide_3905	PWY-6167	flavin biosynthesis II (archaea)
Alide_3911	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Alide_3911	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Alide_3926	PWY-6803	phosphatidylcholine acyl editing
Alide_3926	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
Alide_3926	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
Alide_3926	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Alide_3936	PWY-6700	queuosine biosynthesis
Alide_3949	PWY-3162	L-tryptophan degradation V (side chain pathway)
Alide_3949	PWY-5057	L-valine degradation II
Alide_3949	PWY-5076	L-leucine degradation III
Alide_3949	PWY-5078	L-isoleucine degradation II
Alide_3949	PWY-5079	L-phenylalanine degradation III
Alide_3949	PWY-5082	L-methionine degradation III
Alide_3949	PWY-5480	pyruvate fermentation to ethanol I
Alide_3949	PWY-5486	pyruvate fermentation to ethanol II
Alide_3949	PWY-5751	phenylethanol biosynthesis
Alide_3949	PWY-6028	acetoin degradation
Alide_3949	PWY-6313	serotonin degradation
Alide_3949	PWY-6333	acetaldehyde biosynthesis I
Alide_3949	PWY-6342	noradrenaline and adrenaline degradation
Alide_3949	PWY-6587	pyruvate fermentation to ethanol III
Alide_3949	PWY-6802	salidroside biosynthesis
Alide_3949	PWY-6871	3-methylbutanol biosynthesis
Alide_3949	PWY-7013	L-1,2-propanediol degradation
Alide_3949	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Alide_3949	PWY-7118	chitin degradation to ethanol
Alide_3949	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Alide_3949	PWY-7557	dehydrodiconiferyl alcohol degradation
Alide_3974	PWY-4261	glycerol degradation I
Alide_3974	PWY-6118	glycerol-3-phosphate shuttle
Alide_3974	PWY-6952	glycerophosphodiester degradation
Alide_3976	PWY-4261	glycerol degradation I
Alide_3977	PWY-3341	L-proline biosynthesis III
Alide_3977	PWY-4981	L-proline biosynthesis II (from arginine)
Alide_3977	PWY-6344	L-ornithine degradation II (Stickland reaction)
Alide_3984	PWY-6700	queuosine biosynthesis
Alide_3986	PWY-4041	&gamma;-glutamyl cycle
Alide_3986	PWY-5826	hypoglycin biosynthesis
Alide_3993	PWY-5958	acridone alkaloid biosynthesis
Alide_3993	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Alide_3993	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Alide_4050	PWY-3461	L-tyrosine biosynthesis II
Alide_4050	PWY-3462	L-phenylalanine biosynthesis II
Alide_4050	PWY-6120	L-tyrosine biosynthesis III
Alide_4050	PWY-6627	salinosporamide A biosynthesis
Alide_4051	PWY-5958	acridone alkaloid biosynthesis
Alide_4051	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Alide_4051	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Alide_4054	PWY-181	photorespiration
Alide_4056	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Alide_4056	PWY-5723	Rubisco shunt
Alide_4060	PWY-6840	homoglutathione biosynthesis
Alide_4060	PWY-7255	ergothioneine biosynthesis I (bacteria)
Alide_4061	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Alide_4061	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Alide_4061	PWY-6896	thiamin salvage I
Alide_4061	PWY-6897	thiamin salvage II
Alide_4068	PWY-1281	sulfoacetaldehyde degradation I
Alide_4068	PWY-5482	pyruvate fermentation to acetate II
Alide_4068	PWY-5485	pyruvate fermentation to acetate IV
Alide_4068	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide_4068	PWY-6637	sulfolactate degradation II
Alide_4069	PWY-5482	pyruvate fermentation to acetate II
Alide_4069	PWY-5485	pyruvate fermentation to acetate IV
Alide_4069	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide_4070	PWY-5269	cardiolipin biosynthesis II
Alide_4070	PWY-5668	cardiolipin biosynthesis I
Alide_4093	PWY-6728	methylaspartate cycle
Alide_4093	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_4093	PWY-7118	chitin degradation to ethanol
Alide_4093	PWY-7294	xylose degradation IV
Alide_4093	PWY-7295	L-arabinose degradation IV
Alide_4120	PWY-2941	L-lysine biosynthesis II
Alide_4120	PWY-2942	L-lysine biosynthesis III
Alide_4120	PWY-5097	L-lysine biosynthesis VI
Alide_4126	PWY-6123	inosine-5'-phosphate biosynthesis I
Alide_4126	PWY-6124	inosine-5'-phosphate biosynthesis II
Alide_4126	PWY-7234	inosine-5'-phosphate biosynthesis III
Alide_4128	PWY-6123	inosine-5'-phosphate biosynthesis I
Alide_4128	PWY-7234	inosine-5'-phosphate biosynthesis III
Alide_4146	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Alide_4146	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Alide_4158	PWY-1042	glycolysis IV (plant cytosol)
Alide_4158	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Alide_4158	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide_4158	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Alide_4158	PWY-7385	1,3-propanediol biosynthesis (engineered)
Alide_4159	PWY-1042	glycolysis IV (plant cytosol)
Alide_4159	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Alide_4159	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide_4159	PWY-5723	Rubisco shunt
Alide_4159	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Alide_4159	PWY-6886	1-butanol autotrophic biosynthesis
Alide_4159	PWY-6901	superpathway of glucose and xylose degradation
Alide_4159	PWY-7003	glycerol degradation to butanol
Alide_4159	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Alide_4159	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Alide_4169	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Alide_4169	PWY-5723	Rubisco shunt
Alide_4169	PWY-6891	thiazole biosynthesis II (Bacillus)
Alide_4169	PWY-6892	thiazole biosynthesis I (E. coli)
Alide_4169	PWY-6901	superpathway of glucose and xylose degradation
Alide_4169	PWY-7560	methylerythritol phosphate pathway II
Alide_4170	PWY-1042	glycolysis IV (plant cytosol)
Alide_4170	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide_4170	PWY-6901	superpathway of glucose and xylose degradation
Alide_4170	PWY-7003	glycerol degradation to butanol
Alide_4194	PWY-5392	reductive TCA cycle II
Alide_4194	PWY-5537	pyruvate fermentation to acetate V
Alide_4194	PWY-5538	pyruvate fermentation to acetate VI
Alide_4194	PWY-5690	TCA cycle II (plants and fungi)
Alide_4194	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide_4194	PWY-6728	methylaspartate cycle
Alide_4194	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_4194	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide_4199	PWY-6424	Alide_4199
Alide_4200	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Alide_4200	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Alide_4210	PWY-6654	phosphopantothenate biosynthesis III
Alide_4214	PWY-6832	2-aminoethylphosphonate degradation II
Alide_4223	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Alide_4247	PWY-6123	inosine-5'-phosphate biosynthesis I
Alide_4247	PWY-6124	inosine-5'-phosphate biosynthesis II
Alide_4247	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Alide_4247	PWY-7234	inosine-5'-phosphate biosynthesis III
Alide_4265	PWY-5392	reductive TCA cycle II
Alide_4265	PWY-5537	pyruvate fermentation to acetate V
Alide_4265	PWY-5538	pyruvate fermentation to acetate VI
Alide_4265	PWY-5690	TCA cycle II (plants and fungi)
Alide_4265	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide_4265	PWY-6728	methylaspartate cycle
Alide_4265	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_4265	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide_4266	PWY-5392	reductive TCA cycle II
Alide_4266	PWY-5537	pyruvate fermentation to acetate V
Alide_4266	PWY-5538	pyruvate fermentation to acetate VI
Alide_4266	PWY-5690	TCA cycle II (plants and fungi)
Alide_4266	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide_4266	PWY-6728	methylaspartate cycle
Alide_4266	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_4266	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide_4267	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide_4267	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Alide_4275	PWY-1042	glycolysis IV (plant cytosol)
Alide_4275	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide_4275	PWY-6886	1-butanol autotrophic biosynthesis
Alide_4275	PWY-6901	superpathway of glucose and xylose degradation
Alide_4275	PWY-7003	glycerol degradation to butanol
Alide_4279	PWY-5686	UMP biosynthesis
Alide_4296	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Alide_4296	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Alide_4308	PWY-4381	fatty acid biosynthesis initiation I
Alide_4308	PWY-5743	3-hydroxypropanoate cycle
Alide_4308	PWY-5744	glyoxylate assimilation
Alide_4308	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide_4308	PWY-6679	jadomycin biosynthesis
Alide_4308	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide_4310	PWY-5392	reductive TCA cycle II
Alide_4310	PWY-5537	pyruvate fermentation to acetate V
Alide_4310	PWY-5538	pyruvate fermentation to acetate VI
Alide_4310	PWY-5690	TCA cycle II (plants and fungi)
Alide_4310	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide_4310	PWY-6728	methylaspartate cycle
Alide_4310	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide_4310	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide_4323	PWY-6167	flavin biosynthesis II (archaea)
Alide_4323	PWY-6168	flavin biosynthesis III (fungi)
Alide_4323	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Alide_4340	PWY-723	alkylnitronates degradation
Alide_4353	PWY-4041	&gamma;-glutamyl cycle
Alide_4353	PWY-5826	hypoglycin biosynthesis
Alide_4364	PWY-5642	2,4-dinitrotoluene degradation
Alide_4364	PWY-6373	acrylate degradation
Alide_4374	PWY-1281	sulfoacetaldehyde degradation I
Alide_4374	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Alide_4374	PWY-5482	pyruvate fermentation to acetate II
Alide_4374	PWY-5485	pyruvate fermentation to acetate IV
Alide_4374	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide_4374	PWY-6637	sulfolactate degradation II
Alide_4374	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Alide_4391	PWY-5344	L-homocysteine biosynthesis
Alide_4397	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Alide_4397	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Alide_4400	PWY-6605	adenine and adenosine salvage II
Alide_4400	PWY-6610	adenine and adenosine salvage IV
Alide_4407	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide_4407	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide_4409	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
