Alide2_0017	PWY-4381	fatty acid biosynthesis initiation I
Alide2_0017	PWY-5743	3-hydroxypropanoate cycle
Alide2_0017	PWY-5744	glyoxylate assimilation
Alide2_0017	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide2_0017	PWY-6679	jadomycin biosynthesis
Alide2_0017	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide2_0024	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Alide2_0024	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Alide2_0024	PWY-6164	3-dehydroquinate biosynthesis I
Alide2_0031	PWY-5392	reductive TCA cycle II
Alide2_0031	PWY-5537	pyruvate fermentation to acetate V
Alide2_0031	PWY-5538	pyruvate fermentation to acetate VI
Alide2_0031	PWY-5690	TCA cycle II (plants and fungi)
Alide2_0031	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide2_0031	PWY-6728	methylaspartate cycle
Alide2_0031	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_0031	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide2_0039	PWY-6807	xyloglucan degradation II (exoglucanase)
Alide2_0066	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide2_0066	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide2_0068	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Alide2_0068	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Alide2_0068	PWY-6268	adenosylcobalamin salvage from cobalamin
Alide2_0068	PWY-6269	adenosylcobalamin salvage from cobinamide II
Alide2_0086	PWY-5669	phosphatidylethanolamine biosynthesis I
Alide2_0103	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Alide2_0116	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide2_0116	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide2_0116	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide2_0119	PWY-3781	aerobic respiration I (cytochrome c)
Alide2_0119	PWY-4521	arsenite oxidation I (respiratory)
Alide2_0119	PWY-6692	Fe(II) oxidation
Alide2_0119	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide2_0178	PWY-4381	fatty acid biosynthesis initiation I
Alide2_0178	PWY-5743	3-hydroxypropanoate cycle
Alide2_0178	PWY-5744	glyoxylate assimilation
Alide2_0178	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide2_0178	PWY-6679	jadomycin biosynthesis
Alide2_0178	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide2_0193	PWY-2201	folate transformations I
Alide2_0193	PWY-3841	folate transformations II
Alide2_0204	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Alide2_0230	PWY-5392	reductive TCA cycle II
Alide2_0230	PWY-5537	pyruvate fermentation to acetate V
Alide2_0230	PWY-5538	pyruvate fermentation to acetate VI
Alide2_0230	PWY-5690	TCA cycle II (plants and fungi)
Alide2_0230	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide2_0230	PWY-6728	methylaspartate cycle
Alide2_0230	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_0230	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide2_0231	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide2_0231	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide2_0237	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Alide2_0242	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Alide2_0244	PWY-5057	L-valine degradation II
Alide2_0244	PWY-5076	L-leucine degradation III
Alide2_0244	PWY-5078	L-isoleucine degradation II
Alide2_0244	PWY-5101	L-isoleucine biosynthesis II
Alide2_0244	PWY-5103	L-isoleucine biosynthesis III
Alide2_0244	PWY-5104	L-isoleucine biosynthesis IV
Alide2_0244	PWY-5108	L-isoleucine biosynthesis V
Alide2_0250	PWY-723	alkylnitronates degradation
Alide2_0270	PWY-5418	phenol degradation I (aerobic)
Alide2_0274	PWY-5418	phenol degradation I (aerobic)
Alide2_0277	PWY-5419	catechol degradation to 2-oxopent-4-enoate II
Alide2_0277	PWY-5641	2-nitrotoluene degradation
Alide2_0283	PWY-5162	2-oxopentenoate degradation
Alide2_0283	PWY-5436	L-threonine degradation IV
Alide2_0283	PWY-5480	pyruvate fermentation to ethanol I
Alide2_0283	PWY-6587	pyruvate fermentation to ethanol III
Alide2_0283	PWY-7085	triethylamine degradation
Alide2_0283	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Alide2_0284	PWY-5162	2-oxopentenoate degradation
Alide2_0285	PWY-5419	catechol degradation to 2-oxopent-4-enoate II
Alide2_0285	PWY-5647	2-nitrobenzoate degradation I
Alide2_0285	PWY-5654	2-amino-3-carboxymuconate semialdehyde degradation to 2-oxopentenoate
Alide2_0285	PWY-6210	2-aminophenol degradation
Alide2_0285	PWY-6214	3-chlorocatechol degradation III (<i>meta</i> pathway)
Alide2_0285	PWY-6336	protocatechuate degradation III (<I>para</I>-cleavage pathway)
Alide2_0285	PWY-7006	4-amino-3-hydroxybenzoate degradation
Alide2_0285	PWY-7480	2,3-dihydroxybenzoate degradation
Alide2_0316	PWY-5686	UMP biosynthesis
Alide2_0319	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Alide2_0325	PWY-31	canavanine degradation
Alide2_0325	PWY-4984	urea cycle
Alide2_0325	PWY-6305	putrescine biosynthesis IV
Alide2_0325	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Alide2_0327	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Alide2_0327	PWY-7494	choline degradation IV
Alide2_0344	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Alide2_0344	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Alide2_0350	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Alide2_0350	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Alide2_0374	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Alide2_0374	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Alide2_0374	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Alide2_0375	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Alide2_0375	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Alide2_0382	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Alide2_0384	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Alide2_0451	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Alide2_0452	PWY-6832	2-aminoethylphosphonate degradation II
Alide2_0455	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide2_0455	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide2_0457	PWY-2201	folate transformations I
Alide2_0457	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide2_0460	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Alide2_0460	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide2_0460	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Alide2_0460	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Alide2_0460	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide2_0460	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide2_0460	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide2_0460	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Alide2_0470	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Alide2_0470	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Alide2_0470	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Alide2_0470	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Alide2_0525	PWY-1361	benzoyl-CoA degradation I (aerobic)
Alide2_0525	PWY-5109	2-methylbutanoate biosynthesis
Alide2_0525	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Alide2_0525	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Alide2_0525	PWY-5177	glutaryl-CoA degradation
Alide2_0525	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide2_0525	PWY-6435	4-hydroxybenzoate biosynthesis V
Alide2_0525	PWY-6583	pyruvate fermentation to butanol I
Alide2_0525	PWY-6863	pyruvate fermentation to hexanol
Alide2_0525	PWY-6883	pyruvate fermentation to butanol II
Alide2_0525	PWY-6944	androstenedione degradation
Alide2_0525	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Alide2_0525	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Alide2_0525	PWY-7007	methyl ketone biosynthesis
Alide2_0525	PWY-7046	4-coumarate degradation (anaerobic)
Alide2_0525	PWY-7094	fatty acid salvage
Alide2_0525	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Alide2_0525	PWY-735	jasmonic acid biosynthesis
Alide2_0525	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Alide2_0526	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Alide2_0526	PWY-7494	choline degradation IV
Alide2_0531	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Alide2_0532	PWY-6617	adenosine nucleotides degradation III
Alide2_0553	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Alide2_0557	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Alide2_0557	PWY-6148	tetrahydromethanopterin biosynthesis
Alide2_0557	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Alide2_0557	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Alide2_0558	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Alide2_0558	PWY-6148	tetrahydromethanopterin biosynthesis
Alide2_0558	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Alide2_0558	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Alide2_0586	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Alide2_0586	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Alide2_0586	PWY-5989	stearate biosynthesis II (bacteria and plants)
Alide2_0586	PWY-5994	palmitate biosynthesis I (animals and fungi)
Alide2_0586	PWY-6113	superpathway of mycolate biosynthesis
Alide2_0586	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Alide2_0586	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Alide2_0586	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide2_0586	PWYG-321	mycolate biosynthesis
Alide2_0592	PWY-6134	L-tyrosine biosynthesis IV
Alide2_0592	PWY-7158	L-phenylalanine degradation V
Alide2_0593	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Alide2_0596	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Alide2_0596	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Alide2_0604	PWY-3961	phosphopantothenate biosynthesis II
Alide2_0607	PWY-3221	dTDP-L-rhamnose biosynthesis II
Alide2_0607	PWY-6808	dTDP-D-forosamine biosynthesis
Alide2_0607	PWY-6942	dTDP-D-desosamine biosynthesis
Alide2_0607	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Alide2_0607	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Alide2_0607	PWY-6974	dTDP-L-olivose biosynthesis
Alide2_0607	PWY-6976	dTDP-L-mycarose biosynthesis
Alide2_0607	PWY-7104	dTDP-L-megosamine biosynthesis
Alide2_0607	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Alide2_0607	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Alide2_0607	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Alide2_0607	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Alide2_0607	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Alide2_0607	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Alide2_0607	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Alide2_0607	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Alide2_0609	PWY-3221	dTDP-L-rhamnose biosynthesis II
Alide2_0609	PWY-6808	dTDP-D-forosamine biosynthesis
Alide2_0609	PWY-6942	dTDP-D-desosamine biosynthesis
Alide2_0609	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Alide2_0609	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Alide2_0609	PWY-6974	dTDP-L-olivose biosynthesis
Alide2_0609	PWY-6976	dTDP-L-mycarose biosynthesis
Alide2_0609	PWY-7104	dTDP-L-megosamine biosynthesis
Alide2_0609	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Alide2_0609	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Alide2_0609	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Alide2_0609	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Alide2_0609	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Alide2_0609	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Alide2_0609	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Alide2_0609	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Alide2_0631	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Alide2_0631	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Alide2_0631	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Alide2_0632	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide2_0632	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Alide2_0637	PWY-1361	benzoyl-CoA degradation I (aerobic)
Alide2_0637	PWY-5109	2-methylbutanoate biosynthesis
Alide2_0637	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Alide2_0637	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Alide2_0637	PWY-5177	glutaryl-CoA degradation
Alide2_0637	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide2_0637	PWY-6435	4-hydroxybenzoate biosynthesis V
Alide2_0637	PWY-6583	pyruvate fermentation to butanol I
Alide2_0637	PWY-6863	pyruvate fermentation to hexanol
Alide2_0637	PWY-6883	pyruvate fermentation to butanol II
Alide2_0637	PWY-6944	androstenedione degradation
Alide2_0637	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Alide2_0637	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Alide2_0637	PWY-7007	methyl ketone biosynthesis
Alide2_0637	PWY-7046	4-coumarate degradation (anaerobic)
Alide2_0637	PWY-7094	fatty acid salvage
Alide2_0637	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Alide2_0637	PWY-735	jasmonic acid biosynthesis
Alide2_0637	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Alide2_0657	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Alide2_0659	PWY-2201	folate transformations I
Alide2_0659	PWY-3841	folate transformations II
Alide2_0670	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Alide2_0675	PWY-6749	CMP-legionaminate biosynthesis I
Alide2_0688	PWY-5659	GDP-mannose biosynthesis
Alide2_0688	PWY-6073	alginate biosynthesis I (algal)
Alide2_0688	PWY-6082	alginate biosynthesis II (bacterial)
Alide2_0688	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Alide2_0737	PWY-7052	cyanophycin metabolism
Alide2_0738	PWY-7052	cyanophycin metabolism
Alide2_0743	PWY-5381	pyridine nucleotide cycling (plants)
Alide2_0743	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Alide2_0743	PWY-6596	adenosine nucleotides degradation I
Alide2_0743	PWY-6606	guanosine nucleotides degradation II
Alide2_0743	PWY-6607	guanosine nucleotides degradation I
Alide2_0743	PWY-6608	guanosine nucleotides degradation III
Alide2_0743	PWY-7185	UTP and CTP dephosphorylation I
Alide2_0759	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Alide2_0759	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Alide2_0759	PWY-6269	adenosylcobalamin salvage from cobinamide II
Alide2_0772	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Alide2_0772	PWY-5723	Rubisco shunt
Alide2_0773	PWY-3801	sucrose degradation II (sucrose synthase)
Alide2_0773	PWY-5054	sorbitol biosynthesis I
Alide2_0773	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Alide2_0773	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Alide2_0773	PWY-5659	GDP-mannose biosynthesis
Alide2_0773	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Alide2_0773	PWY-621	sucrose degradation III (sucrose invertase)
Alide2_0773	PWY-622	starch biosynthesis
Alide2_0773	PWY-6531	mannitol cycle
Alide2_0773	PWY-6981	chitin biosynthesis
Alide2_0773	PWY-7238	sucrose biosynthesis II
Alide2_0773	PWY-7347	sucrose biosynthesis III
Alide2_0773	PWY-7385	1,3-propanediol biosynthesis (engineered)
Alide2_0777	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Alide2_0777	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Alide2_0792	PWY-2941	L-lysine biosynthesis II
Alide2_0792	PWY-2942	L-lysine biosynthesis III
Alide2_0792	PWY-5097	L-lysine biosynthesis VI
Alide2_0802	PWY-6164	3-dehydroquinate biosynthesis I
Alide2_0806	PWY-5642	2,4-dinitrotoluene degradation
Alide2_0806	PWY-6373	acrylate degradation
Alide2_0817	PWY-6834	spermidine biosynthesis III
Alide2_0828	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide2_0828	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide2_0845	PWY-3821	galactose degradation III
Alide2_0845	PWY-6317	galactose degradation I (Leloir pathway)
Alide2_0845	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Alide2_0845	PWY-6527	stachyose degradation
Alide2_0845	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Alide2_0845	PWY-7344	UDP-D-galactose biosynthesis
Alide2_0856	PWY-5663	tetrahydrobiopterin biosynthesis I
Alide2_0856	PWY-5664	tetrahydrobiopterin biosynthesis II
Alide2_0856	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Alide2_0856	PWY-6703	preQ<sub>0</sub> biosynthesis
Alide2_0856	PWY-6983	tetrahydrobiopterin biosynthesis III
Alide2_0856	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Alide2_0859	PWY-3781	aerobic respiration I (cytochrome c)
Alide2_0859	PWY-6692	Fe(II) oxidation
Alide2_0859	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
Alide2_0859	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide2_0866	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide2_0901	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Alide2_0913	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide2_0913	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide2_0916	PWY-5839	menaquinol-7 biosynthesis
Alide2_0916	PWY-5844	menaquinol-9 biosynthesis
Alide2_0916	PWY-5849	menaquinol-6 biosynthesis
Alide2_0916	PWY-5890	menaquinol-10 biosynthesis
Alide2_0916	PWY-5891	menaquinol-11 biosynthesis
Alide2_0916	PWY-5892	menaquinol-12 biosynthesis
Alide2_0916	PWY-5895	menaquinol-13 biosynthesis
Alide2_0927	PWY-5663	tetrahydrobiopterin biosynthesis I
Alide2_0927	PWY-5664	tetrahydrobiopterin biosynthesis II
Alide2_0927	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Alide2_0927	PWY-6703	preQ<sub>0</sub> biosynthesis
Alide2_0927	PWY-6983	tetrahydrobiopterin biosynthesis III
Alide2_0927	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Alide2_0936	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Alide2_0946	PWY-7560	methylerythritol phosphate pathway II
Alide2_0954	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Alide2_0954	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Alide2_0954	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Alide2_0997	PWY-1622	formaldehyde assimilation I (serine pathway)
Alide2_0997	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide2_1001	PWY-5667	CDP-diacylglycerol biosynthesis I
Alide2_1001	PWY-5981	CDP-diacylglycerol biosynthesis III
Alide2_1009	PWY-6654	phosphopantothenate biosynthesis III
Alide2_1011	PWY-5316	nicotine biosynthesis
Alide2_1011	PWY-5381	pyridine nucleotide cycling (plants)
Alide2_1011	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Alide2_1011	PWY-7342	superpathway of nicotine biosynthesis
Alide2_1012	PWY-5316	nicotine biosynthesis
Alide2_1012	PWY-7342	superpathway of nicotine biosynthesis
Alide2_1013	PWY-5958	acridone alkaloid biosynthesis
Alide2_1013	PWY-6543	4-aminobenzoate biosynthesis
Alide2_1013	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Alide2_1013	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Alide2_1013	PWY-6722	candicidin biosynthesis
Alide2_1015	PWY-5316	nicotine biosynthesis
Alide2_1015	PWY-7342	superpathway of nicotine biosynthesis
Alide2_1026	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Alide2_1034	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Alide2_1046	PWY-1881	formate oxidation to CO<sub>2</sub>
Alide2_1046	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide2_1046	PWY-6696	oxalate degradation III
Alide2_1072	PWY-7560	methylerythritol phosphate pathway II
Alide2_1075	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Alide2_1087	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Alide2_1106	PWY-5101	L-isoleucine biosynthesis II
Alide2_1106	PWY-5103	L-isoleucine biosynthesis III
Alide2_1106	PWY-5104	L-isoleucine biosynthesis IV
Alide2_1106	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Alide2_1107	PWY-5101	L-isoleucine biosynthesis II
Alide2_1107	PWY-5103	L-isoleucine biosynthesis III
Alide2_1107	PWY-5104	L-isoleucine biosynthesis IV
Alide2_1107	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Alide2_1119	PWY-3781	aerobic respiration I (cytochrome c)
Alide2_1119	PWY-4521	arsenite oxidation I (respiratory)
Alide2_1119	PWY-6692	Fe(II) oxidation
Alide2_1119	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide2_1120	PWY-3781	aerobic respiration I (cytochrome c)
Alide2_1120	PWY-4521	arsenite oxidation I (respiratory)
Alide2_1120	PWY-6692	Fe(II) oxidation
Alide2_1120	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide2_1135	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Alide2_1135	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Alide2_1135	PWY-6269	adenosylcobalamin salvage from cobinamide II
Alide2_1139	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Alide2_1139	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Alide2_1139	PWY-6268	adenosylcobalamin salvage from cobalamin
Alide2_1139	PWY-6269	adenosylcobalamin salvage from cobinamide II
Alide2_1157	PWY-1361	benzoyl-CoA degradation I (aerobic)
Alide2_1157	PWY-5109	2-methylbutanoate biosynthesis
Alide2_1157	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Alide2_1157	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Alide2_1157	PWY-5177	glutaryl-CoA degradation
Alide2_1157	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide2_1157	PWY-6435	4-hydroxybenzoate biosynthesis V
Alide2_1157	PWY-6583	pyruvate fermentation to butanol I
Alide2_1157	PWY-6863	pyruvate fermentation to hexanol
Alide2_1157	PWY-6883	pyruvate fermentation to butanol II
Alide2_1157	PWY-6944	androstenedione degradation
Alide2_1157	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Alide2_1157	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Alide2_1157	PWY-7007	methyl ketone biosynthesis
Alide2_1157	PWY-7046	4-coumarate degradation (anaerobic)
Alide2_1157	PWY-7094	fatty acid salvage
Alide2_1157	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Alide2_1157	PWY-735	jasmonic acid biosynthesis
Alide2_1157	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Alide2_1161	PWY-5392	reductive TCA cycle II
Alide2_1161	PWY-5537	pyruvate fermentation to acetate V
Alide2_1161	PWY-5538	pyruvate fermentation to acetate VI
Alide2_1161	PWY-5690	TCA cycle II (plants and fungi)
Alide2_1161	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide2_1161	PWY-6728	methylaspartate cycle
Alide2_1161	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_1161	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide2_1180	PWY-6823	molybdenum cofactor biosynthesis
Alide2_1182	PWY-2941	L-lysine biosynthesis II
Alide2_1182	PWY-2942	L-lysine biosynthesis III
Alide2_1182	PWY-5097	L-lysine biosynthesis VI
Alide2_1186	PWY-6823	molybdenum cofactor biosynthesis
Alide2_1204	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Alide2_1204	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Alide2_1204	PWY-6269	adenosylcobalamin salvage from cobinamide II
Alide2_1208	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Alide2_1224	PWY-4983	L-citrulline-nitric oxide cycle
Alide2_1224	PWY-4984	urea cycle
Alide2_1224	PWY-5	canavanine biosynthesis
Alide2_1224	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide2_1224	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Alide2_1232	PWY-5392	reductive TCA cycle II
Alide2_1232	PWY-5537	pyruvate fermentation to acetate V
Alide2_1232	PWY-5538	pyruvate fermentation to acetate VI
Alide2_1232	PWY-5690	TCA cycle II (plants and fungi)
Alide2_1232	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide2_1232	PWY-6728	methylaspartate cycle
Alide2_1232	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_1232	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide2_1248	PWY-6700	queuosine biosynthesis
Alide2_1261	PWY-4381	fatty acid biosynthesis initiation I
Alide2_1262	PWY-4381	fatty acid biosynthesis initiation I
Alide2_1262	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Alide2_1262	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide2_1263	PWY-5367	petroselinate biosynthesis
Alide2_1263	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Alide2_1263	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Alide2_1263	PWY-5989	stearate biosynthesis II (bacteria and plants)
Alide2_1263	PWY-5994	palmitate biosynthesis I (animals and fungi)
Alide2_1263	PWY-6113	superpathway of mycolate biosynthesis
Alide2_1263	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Alide2_1263	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Alide2_1263	PWY-6951	Alide2_1263
Alide2_1263	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Alide2_1263	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide2_1263	PWYG-321	mycolate biosynthesis
Alide2_1278	PWY-6012	acyl carrier protein metabolism I
Alide2_1278	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Alide2_1279	PWY-6902	chitin degradation II
Alide2_1280	PWY-1042	glycolysis IV (plant cytosol)
Alide2_1280	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Alide2_1280	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide2_1280	PWY-7385	1,3-propanediol biosynthesis (engineered)
Alide2_1298	PWY-4381	fatty acid biosynthesis initiation I
Alide2_1298	PWY-5743	3-hydroxypropanoate cycle
Alide2_1298	PWY-5744	glyoxylate assimilation
Alide2_1298	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide2_1298	PWY-6679	jadomycin biosynthesis
Alide2_1298	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide2_1304	PWY-2941	L-lysine biosynthesis II
Alide2_1304	PWY-2942	L-lysine biosynthesis III
Alide2_1304	PWY-5097	L-lysine biosynthesis VI
Alide2_1304	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide2_1304	PWY-6559	spermidine biosynthesis II
Alide2_1304	PWY-6562	norspermidine biosynthesis
Alide2_1304	PWY-7153	grixazone biosynthesis
Alide2_1304	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Alide2_1305	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Alide2_1335	PWY-1281	sulfoacetaldehyde degradation I
Alide2_1335	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Alide2_1335	PWY-5482	pyruvate fermentation to acetate II
Alide2_1335	PWY-5485	pyruvate fermentation to acetate IV
Alide2_1335	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide2_1335	PWY-6637	sulfolactate degradation II
Alide2_1335	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Alide2_1340	PWY-5691	urate degradation to allantoin I
Alide2_1340	PWY-7394	urate degradation to allantoin II
Alide2_1356	PWY-4041	&gamma;-glutamyl cycle
Alide2_1356	PWY-5826	hypoglycin biosynthesis
Alide2_1357	PWY-5691	urate degradation to allantoin I
Alide2_1357	PWY-7394	urate degradation to allantoin II
Alide2_1361	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide2_1370	PWY-6748	nitrate reduction VII (denitrification)
Alide2_1370	PWY-7084	nitrifier denitrification
Alide2_1401	PWY-5381	pyridine nucleotide cycling (plants)
Alide2_1401	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Alide2_1401	PWY-6596	adenosine nucleotides degradation I
Alide2_1401	PWY-6606	guanosine nucleotides degradation II
Alide2_1401	PWY-6607	guanosine nucleotides degradation I
Alide2_1401	PWY-6608	guanosine nucleotides degradation III
Alide2_1401	PWY-7185	UTP and CTP dephosphorylation I
Alide2_1407	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Alide2_1407	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Alide2_1407	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide2_1407	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide2_1407	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Alide2_1407	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Alide2_1407	PWY-7205	CMP phosphorylation
Alide2_1407	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Alide2_1407	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide2_1407	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Alide2_1407	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide2_1407	PWY-7224	purine deoxyribonucleosides salvage
Alide2_1407	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide2_1407	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Alide2_1411	PWY-7560	methylerythritol phosphate pathway II
Alide2_1422	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Alide2_1430	PWY-381	nitrate reduction II (assimilatory)
Alide2_1430	PWY-5675	nitrate reduction V (assimilatory)
Alide2_1430	PWY-6549	L-glutamine biosynthesis III
Alide2_1430	PWY-6963	ammonia assimilation cycle I
Alide2_1430	PWY-6964	ammonia assimilation cycle II
Alide2_1446	PWY-3841	folate transformations II
Alide2_1446	PWY-6614	tetrahydrofolate biosynthesis
Alide2_1447	PWY-3841	folate transformations II
Alide2_1447	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide2_1447	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide2_1447	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Alide2_1447	PWY-7199	pyrimidine deoxyribonucleosides salvage
Alide2_1447	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Alide2_1448	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide2_1448	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide2_1469	PWY-2582	brassinosteroid biosynthesis II
Alide2_1469	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Alide2_1469	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Alide2_1469	PWY-6948	sitosterol degradation to androstenedione
Alide2_1469	PWY-699	brassinosteroid biosynthesis I
Alide2_1469	PWY-7299	progesterone biosynthesis
Alide2_1501	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Alide2_1501	PWY-7494	choline degradation IV
Alide2_1601	PWY-4202	arsenate detoxification I (glutaredoxin)
Alide2_1601	PWY-4621	arsenate detoxification II (glutaredoxin)
Alide2_1622	PWY-5269	cardiolipin biosynthesis II
Alide2_1622	PWY-5668	cardiolipin biosynthesis I
Alide2_1628	PWY-4381	fatty acid biosynthesis initiation I
Alide2_1628	PWY-5743	3-hydroxypropanoate cycle
Alide2_1628	PWY-5744	glyoxylate assimilation
Alide2_1628	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide2_1628	PWY-6679	jadomycin biosynthesis
Alide2_1628	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide2_1635	PWY-6936	seleno-amino acid biosynthesis
Alide2_1638	PWY-3801	sucrose degradation II (sucrose synthase)
Alide2_1638	PWY-6527	stachyose degradation
Alide2_1638	PWY-6981	chitin biosynthesis
Alide2_1638	PWY-7238	sucrose biosynthesis II
Alide2_1638	PWY-7343	UDP-glucose biosynthesis
Alide2_1644	PWY-3781	aerobic respiration I (cytochrome c)
Alide2_1644	PWY-4521	arsenite oxidation I (respiratory)
Alide2_1644	PWY-6692	Fe(II) oxidation
Alide2_1644	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide2_1647	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Alide2_1647	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Alide2_1648	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Alide2_1648	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Alide2_1649	PWY-1622	formaldehyde assimilation I (serine pathway)
Alide2_1649	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Alide2_1649	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide2_1649	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Alide2_1649	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Alide2_1649	PWY-6549	L-glutamine biosynthesis III
Alide2_1649	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Alide2_1649	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Alide2_1649	PWY-7124	ethylene biosynthesis V (engineered)
Alide2_1655	PWY-5506	methanol oxidation to formaldehyde IV
Alide2_1662	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide2_1690	PWY-5028	L-histidine degradation II
Alide2_1690	PWY-5030	L-histidine degradation III
Alide2_1693	PWY-5028	L-histidine degradation II
Alide2_1693	PWY-5030	L-histidine degradation III
Alide2_1699	PWY-5028	L-histidine degradation II
Alide2_1699	PWY-5030	L-histidine degradation III
Alide2_1702	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide2_1702	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide2_1719	PWY-5676	acetyl-CoA fermentation to butanoate II
Alide2_1719	PWY-5741	ethylmalonyl-CoA pathway
Alide2_1719	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Alide2_1763	PWY-6854	ethylene biosynthesis III (microbes)
Alide2_1841	PWY-5392	reductive TCA cycle II
Alide2_1841	PWY-5537	pyruvate fermentation to acetate V
Alide2_1841	PWY-5538	pyruvate fermentation to acetate VI
Alide2_1841	PWY-5690	TCA cycle II (plants and fungi)
Alide2_1841	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide2_1841	PWY-6728	methylaspartate cycle
Alide2_1841	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_1841	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide2_1856	PWY-723	alkylnitronates degradation
Alide2_1873	PWY-4381	fatty acid biosynthesis initiation I
Alide2_1873	PWY-5743	3-hydroxypropanoate cycle
Alide2_1873	PWY-5744	glyoxylate assimilation
Alide2_1873	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide2_1873	PWY-6679	jadomycin biosynthesis
Alide2_1873	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide2_1885	PWY-4202	arsenate detoxification I (glutaredoxin)
Alide2_1885	PWY-4621	arsenate detoxification II (glutaredoxin)
Alide2_1942	PWY-6854	ethylene biosynthesis III (microbes)
Alide2_1970	PWY-5669	phosphatidylethanolamine biosynthesis I
Alide2_1977	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Alide2_1977	PWY-7205	CMP phosphorylation
Alide2_1979	PWY-3461	L-tyrosine biosynthesis II
Alide2_1979	PWY-3462	L-phenylalanine biosynthesis II
Alide2_1979	PWY-6120	L-tyrosine biosynthesis III
Alide2_1979	PWY-6627	salinosporamide A biosynthesis
Alide2_1979	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Alide2_1983	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
Alide2_1983	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
Alide2_1983	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
Alide2_1983	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
Alide2_1983	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
Alide2_1983	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
Alide2_1983	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
Alide2_1983	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
Alide2_1983	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Alide2_1983	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
Alide2_1984	PWY-181	photorespiration
Alide2_2094	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Alide2_2094	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Alide2_2094	PWY-6936	seleno-amino acid biosynthesis
Alide2_2094	PWY-702	L-methionine biosynthesis II
Alide2_2124	PWY-5344	L-homocysteine biosynthesis
Alide2_2124	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Alide2_2126	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Alide2_2128	PWY-1622	formaldehyde assimilation I (serine pathway)
Alide2_2128	PWY-181	photorespiration
Alide2_2128	PWY-2161	folate polyglutamylation
Alide2_2128	PWY-2201	folate transformations I
Alide2_2128	PWY-3661	glycine betaine degradation I
Alide2_2128	PWY-3661-1	glycine betaine degradation II (mammalian)
Alide2_2128	PWY-3841	folate transformations II
Alide2_2128	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide2_2152	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Alide2_2152	PWY-6596	adenosine nucleotides degradation I
Alide2_2152	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Alide2_2153	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Alide2_2161	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Alide2_2193	PWY-6825	phosphatidylcholine biosynthesis V
Alide2_2211	PWY-3781	aerobic respiration I (cytochrome c)
Alide2_2211	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Alide2_2211	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Alide2_2211	PWY-5690	TCA cycle II (plants and fungi)
Alide2_2211	PWY-6728	methylaspartate cycle
Alide2_2211	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_2211	PWY-7254	TCA cycle VII (acetate-producers)
Alide2_2211	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide2_2212	PWY-3781	aerobic respiration I (cytochrome c)
Alide2_2212	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Alide2_2212	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Alide2_2212	PWY-5690	TCA cycle II (plants and fungi)
Alide2_2212	PWY-6728	methylaspartate cycle
Alide2_2212	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_2212	PWY-7254	TCA cycle VII (acetate-producers)
Alide2_2212	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide2_2216	PWY-1622	formaldehyde assimilation I (serine pathway)
Alide2_2216	PWY-5392	reductive TCA cycle II
Alide2_2216	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Alide2_2216	PWY-5690	TCA cycle II (plants and fungi)
Alide2_2216	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide2_2216	PWY-6728	methylaspartate cycle
Alide2_2216	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_2216	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Alide2_2216	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Alide2_2219	PWY-5747	2-methylcitrate cycle II
Alide2_2224	PWY-4081	glutathione redox reactions I
Alide2_2248	PWY-3781	aerobic respiration I (cytochrome c)
Alide2_2248	PWY-4521	arsenite oxidation I (respiratory)
Alide2_2248	PWY-6692	Fe(II) oxidation
Alide2_2248	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide2_2248	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
Alide2_2257	PWY-6167	flavin biosynthesis II (archaea)
Alide2_2257	PWY-6168	flavin biosynthesis III (fungi)
Alide2_2258	PWY-6167	flavin biosynthesis II (archaea)
Alide2_2258	PWY-6168	flavin biosynthesis III (fungi)
Alide2_2258	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Alide2_2262	PWY-6840	homoglutathione biosynthesis
Alide2_2262	PWY-7255	ergothioneine biosynthesis I (bacteria)
Alide2_2281	PWY-5392	reductive TCA cycle II
Alide2_2281	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Alide2_2281	PWY-5690	TCA cycle II (plants and fungi)
Alide2_2281	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide2_2281	PWY-6728	methylaspartate cycle
Alide2_2281	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_2281	PWY-7254	TCA cycle VII (acetate-producers)
Alide2_2281	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide2_2284	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Alide2_2286	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Alide2_2286	PWY-6416	quinate degradation II
Alide2_2286	PWY-6707	gallate biosynthesis
Alide2_2293	PWY-6891	thiazole biosynthesis II (Bacillus)
Alide2_2293	PWY-6892	thiazole biosynthesis I (E. coli)
Alide2_2293	PWY-7560	methylerythritol phosphate pathway II
Alide2_2294	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Alide2_2312	PWY-4381	fatty acid biosynthesis initiation I
Alide2_2312	PWY-5743	3-hydroxypropanoate cycle
Alide2_2312	PWY-5744	glyoxylate assimilation
Alide2_2312	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide2_2312	PWY-6679	jadomycin biosynthesis
Alide2_2312	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide2_2314	PWY-2941	L-lysine biosynthesis II
Alide2_2314	PWY-2942	L-lysine biosynthesis III
Alide2_2314	PWY-5097	L-lysine biosynthesis VI
Alide2_2314	PWY-6559	spermidine biosynthesis II
Alide2_2314	PWY-6562	norspermidine biosynthesis
Alide2_2314	PWY-7153	grixazone biosynthesis
Alide2_2325	PWY-7183	pyrimidine nucleobases salvage I
Alide2_2339	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Alide2_2339	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Alide2_2339	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Alide2_2340	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Alide2_2340	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Alide2_2352	PWY-5194	siroheme biosynthesis
Alide2_2352	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Alide2_2358	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Alide2_2361	PWY-5988	wound-induced proteolysis I
Alide2_2361	PWY-6018	seed germination protein turnover
Alide2_2394	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide2_2394	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
Alide2_2394	PWY-6638	sulfolactate degradation III
Alide2_2394	PWY-6642	(<i>R</i>)-cysteate degradation
Alide2_2394	PWY-6643	coenzyme M biosynthesis II
Alide2_2394	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Alide2_2394	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Alide2_2394	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Alide2_2397	PWY-6823	molybdenum cofactor biosynthesis
Alide2_2397	PWY-6891	thiazole biosynthesis II (Bacillus)
Alide2_2397	PWY-6892	thiazole biosynthesis I (E. coli)
Alide2_2397	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Alide2_2408	PWY-5686	UMP biosynthesis
Alide2_2409	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Alide2_2409	PWY-5723	Rubisco shunt
Alide2_2412	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Alide2_2412	PWY-2201	folate transformations I
Alide2_2412	PWY-3841	folate transformations II
Alide2_2412	PWY-5030	L-histidine degradation III
Alide2_2412	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide2_2412	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Alide2_2415	PWY-6891	thiazole biosynthesis II (Bacillus)
Alide2_2415	PWY-6892	thiazole biosynthesis I (E. coli)
Alide2_2415	PWY-7560	methylerythritol phosphate pathway II
Alide2_2417	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Alide2_2417	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Alide2_2457	PWY-5676	acetyl-CoA fermentation to butanoate II
Alide2_2457	PWY-5741	ethylmalonyl-CoA pathway
Alide2_2457	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Alide2_2481	PWY-5743	3-hydroxypropanoate cycle
Alide2_2481	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide2_2481	PWY-6728	methylaspartate cycle
Alide2_2481	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide2_2483	PWY-4381	fatty acid biosynthesis initiation I
Alide2_2483	PWY-5743	3-hydroxypropanoate cycle
Alide2_2483	PWY-5744	glyoxylate assimilation
Alide2_2483	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide2_2483	PWY-6679	jadomycin biosynthesis
Alide2_2483	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide2_2486	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Alide2_2530	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Alide2_2531	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Alide2_2531	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Alide2_2545	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Alide2_2545	PWY-3162	L-tryptophan degradation V (side chain pathway)
Alide2_2545	PWY-5057	L-valine degradation II
Alide2_2545	PWY-5076	L-leucine degradation III
Alide2_2545	PWY-5078	L-isoleucine degradation II
Alide2_2545	PWY-5079	L-phenylalanine degradation III
Alide2_2545	PWY-5082	L-methionine degradation III
Alide2_2545	PWY-5480	pyruvate fermentation to ethanol I
Alide2_2545	PWY-5486	pyruvate fermentation to ethanol II
Alide2_2545	PWY-5751	phenylethanol biosynthesis
Alide2_2545	PWY-6028	acetoin degradation
Alide2_2545	PWY-6313	serotonin degradation
Alide2_2545	PWY-6333	acetaldehyde biosynthesis I
Alide2_2545	PWY-6342	noradrenaline and adrenaline degradation
Alide2_2545	PWY-6587	pyruvate fermentation to ethanol III
Alide2_2545	PWY-6802	salidroside biosynthesis
Alide2_2545	PWY-6871	3-methylbutanol biosynthesis
Alide2_2545	PWY-7013	L-1,2-propanediol degradation
Alide2_2545	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Alide2_2545	PWY-7118	chitin degradation to ethanol
Alide2_2545	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Alide2_2545	PWY-7557	dehydrodiconiferyl alcohol degradation
Alide2_2546	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Alide2_2552	PWY-723	alkylnitronates degradation
Alide2_2563	PWY-6891	thiazole biosynthesis II (Bacillus)
Alide2_2563	PWY-6892	thiazole biosynthesis I (E. coli)
Alide2_2563	PWY-7560	methylerythritol phosphate pathway II
Alide2_2569	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Alide2_2569	PWY-5723	Rubisco shunt
Alide2_2569	PWY-6891	thiazole biosynthesis II (Bacillus)
Alide2_2569	PWY-6892	thiazole biosynthesis I (E. coli)
Alide2_2569	PWY-6901	superpathway of glucose and xylose degradation
Alide2_2569	PWY-7560	methylerythritol phosphate pathway II
Alide2_2585	PWY-6683	sulfate reduction III (assimilatory)
Alide2_2591	PWY-5194	siroheme biosynthesis
Alide2_2591	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Alide2_2598	PWY-6823	molybdenum cofactor biosynthesis
Alide2_2598	PWY-6891	thiazole biosynthesis II (Bacillus)
Alide2_2598	PWY-6892	thiazole biosynthesis I (E. coli)
Alide2_2598	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Alide2_2609	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide2_2612	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide2_2612	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide2_2619	PWY-2941	L-lysine biosynthesis II
Alide2_2619	PWY-2942	L-lysine biosynthesis III
Alide2_2619	PWY-5097	L-lysine biosynthesis VI
Alide2_2640	PWY-5381	pyridine nucleotide cycling (plants)
Alide2_2657	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Alide2_2673	PWY-6749	CMP-legionaminate biosynthesis I
Alide2_2674	PWY-6614	tetrahydrofolate biosynthesis
Alide2_2681	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide2_2681	PWY-5686	UMP biosynthesis
Alide2_2681	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Alide2_2682	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide2_2682	PWY-5686	UMP biosynthesis
Alide2_2682	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Alide2_2712	PWY-5482	pyruvate fermentation to acetate II
Alide2_2712	PWY-5485	pyruvate fermentation to acetate IV
Alide2_2712	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide2_2726	PWY-7181	pyrimidine deoxyribonucleosides degradation
Alide2_2750	PWY-6825	phosphatidylcholine biosynthesis V
Alide2_2832	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_2851	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Alide2_2867	PWY-3941	&beta;-alanine biosynthesis II
Alide2_2867	PWY-5104	L-isoleucine biosynthesis IV
Alide2_2867	PWY-5747	2-methylcitrate cycle II
Alide2_2871	PWY-5642	2,4-dinitrotoluene degradation
Alide2_2871	PWY-6373	acrylate degradation
Alide2_2881	PWY-6497	D-galactarate degradation II
Alide2_2886	PWY-6497	D-galactarate degradation II
Alide2_2886	PWY-6499	D-glucarate degradation II
Alide2_2907	PWY-5392	reductive TCA cycle II
Alide2_2907	PWY-5537	pyruvate fermentation to acetate V
Alide2_2907	PWY-5538	pyruvate fermentation to acetate VI
Alide2_2907	PWY-5690	TCA cycle II (plants and fungi)
Alide2_2907	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide2_2907	PWY-6728	methylaspartate cycle
Alide2_2907	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_2907	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide2_2909	PWY-6749	CMP-legionaminate biosynthesis I
Alide2_2912	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Alide2_2923	PWY-5344	L-homocysteine biosynthesis
Alide2_2923	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Alide2_2928	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Alide2_2928	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Alide2_2928	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Alide2_2937	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide2_2937	PWY-6549	L-glutamine biosynthesis III
Alide2_2937	PWY-6728	methylaspartate cycle
Alide2_2937	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_2937	PWY-7124	ethylene biosynthesis V (engineered)
Alide2_2937	PWY-7254	TCA cycle VII (acetate-producers)
Alide2_2937	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Alide2_2939	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide2_2939	PWY-6549	L-glutamine biosynthesis III
Alide2_2939	PWY-6728	methylaspartate cycle
Alide2_2939	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_2939	PWY-7124	ethylene biosynthesis V (engineered)
Alide2_2939	PWY-7254	TCA cycle VII (acetate-producers)
Alide2_2939	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Alide2_2940	PWY-6854	ethylene biosynthesis III (microbes)
Alide2_2946	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Alide2_2946	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Alide2_2947	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Alide2_2959	PWY-5386	methylglyoxal degradation I
Alide2_3009	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Alide2_3009	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Alide2_3009	PWY-7242	D-fructuronate degradation
Alide2_3009	PWY-7310	D-glucosaminate degradation
Alide2_3010	PWY-5101	L-isoleucine biosynthesis II
Alide2_3010	PWY-5103	L-isoleucine biosynthesis III
Alide2_3010	PWY-5104	L-isoleucine biosynthesis IV
Alide2_3010	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Alide2_3014	PWY-5530	sorbitol biosynthesis II
Alide2_3014	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Alide2_3024	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Alide2_3024	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Alide2_3025	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Alide2_3026	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Alide2_3036	PWY-6825	phosphatidylcholine biosynthesis V
Alide2_3038	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Alide2_3038	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Alide2_3038	PWY-5989	stearate biosynthesis II (bacteria and plants)
Alide2_3038	PWY-6113	superpathway of mycolate biosynthesis
Alide2_3038	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Alide2_3038	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Alide2_3038	PWY-7096	triclosan resistance
Alide2_3038	PWYG-321	mycolate biosynthesis
Alide2_3097	PWY-6683	sulfate reduction III (assimilatory)
Alide2_3100	PWY-5278	sulfite oxidation III
Alide2_3100	PWY-5340	sulfate activation for sulfonation
Alide2_3100	PWY-6683	sulfate reduction III (assimilatory)
Alide2_3100	PWY-6932	selenate reduction
Alide2_3101	PWY-5278	sulfite oxidation III
Alide2_3101	PWY-5340	sulfate activation for sulfonation
Alide2_3101	PWY-6683	sulfate reduction III (assimilatory)
Alide2_3101	PWY-6932	selenate reduction
Alide2_3103	PWY-101	photosynthesis light reactions
Alide2_3103	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Alide2_3106	PWY-6910	hydroxymethylpyrimidine salvage
Alide2_3106	PWY-7356	thiamin salvage IV (yeast)
Alide2_3106	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Alide2_3109	PWY-6891	thiazole biosynthesis II (Bacillus)
Alide2_3109	PWY-6892	thiazole biosynthesis I (E. coli)
Alide2_3110	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Alide2_3110	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Alide2_3110	PWY-6897	thiamin salvage II
Alide2_3110	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Alide2_3110	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Alide2_3110	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Alide2_3110	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Alide2_3112	PWY-1361	benzoyl-CoA degradation I (aerobic)
Alide2_3112	PWY-5109	2-methylbutanoate biosynthesis
Alide2_3112	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Alide2_3112	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Alide2_3112	PWY-5177	glutaryl-CoA degradation
Alide2_3112	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide2_3112	PWY-6435	4-hydroxybenzoate biosynthesis V
Alide2_3112	PWY-6583	pyruvate fermentation to butanol I
Alide2_3112	PWY-6863	pyruvate fermentation to hexanol
Alide2_3112	PWY-6883	pyruvate fermentation to butanol II
Alide2_3112	PWY-6944	androstenedione degradation
Alide2_3112	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Alide2_3112	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Alide2_3112	PWY-7007	methyl ketone biosynthesis
Alide2_3112	PWY-7046	4-coumarate degradation (anaerobic)
Alide2_3112	PWY-7094	fatty acid salvage
Alide2_3112	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Alide2_3112	PWY-735	jasmonic acid biosynthesis
Alide2_3112	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Alide2_3117	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
Alide2_3117	PWY-6853	ethylene biosynthesis II (microbes)
Alide2_3117	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Alide2_3121	PWY-6871	3-methylbutanol biosynthesis
Alide2_3122	PWY-6871	3-methylbutanol biosynthesis
Alide2_3128	PWY-5669	phosphatidylethanolamine biosynthesis I
Alide2_3129	PWY-5101	L-isoleucine biosynthesis II
Alide2_3129	PWY-5103	L-isoleucine biosynthesis III
Alide2_3129	PWY-5104	L-isoleucine biosynthesis IV
Alide2_3129	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Alide2_3130	PWY-5101	L-isoleucine biosynthesis II
Alide2_3130	PWY-5103	L-isoleucine biosynthesis III
Alide2_3130	PWY-5104	L-isoleucine biosynthesis IV
Alide2_3130	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Alide2_3130	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Alide2_3130	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Alide2_3130	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Alide2_3131	PWY-5101	L-isoleucine biosynthesis II
Alide2_3131	PWY-5103	L-isoleucine biosynthesis III
Alide2_3131	PWY-5104	L-isoleucine biosynthesis IV
Alide2_3131	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Alide2_3131	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Alide2_3131	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Alide2_3131	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Alide2_3136	PWY-7039	phosphatidate metabolism, as a signaling molecule
Alide2_3139	PWY-5381	pyridine nucleotide cycling (plants)
Alide2_3139	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Alide2_3149	PWY-6823	molybdenum cofactor biosynthesis
Alide2_3150	PWY-5964	guanylyl molybdenum cofactor biosynthesis
Alide2_3152	PWY-6823	molybdenum cofactor biosynthesis
Alide2_3164	PWY-5386	methylglyoxal degradation I
Alide2_3196	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Alide2_3196	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide2_3196	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide2_3196	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Alide2_3196	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Alide2_3196	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Alide2_3227	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Alide2_3227	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Alide2_3246	PWY-1361	benzoyl-CoA degradation I (aerobic)
Alide2_3246	PWY-5109	2-methylbutanoate biosynthesis
Alide2_3246	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Alide2_3246	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Alide2_3246	PWY-5177	glutaryl-CoA degradation
Alide2_3246	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide2_3246	PWY-6435	4-hydroxybenzoate biosynthesis V
Alide2_3246	PWY-6583	pyruvate fermentation to butanol I
Alide2_3246	PWY-6863	pyruvate fermentation to hexanol
Alide2_3246	PWY-6883	pyruvate fermentation to butanol II
Alide2_3246	PWY-6944	androstenedione degradation
Alide2_3246	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Alide2_3246	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Alide2_3246	PWY-7007	methyl ketone biosynthesis
Alide2_3246	PWY-7046	4-coumarate degradation (anaerobic)
Alide2_3246	PWY-7094	fatty acid salvage
Alide2_3246	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Alide2_3246	PWY-735	jasmonic acid biosynthesis
Alide2_3246	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Alide2_3274	PWY-5381	pyridine nucleotide cycling (plants)
Alide2_3372	PWY-7181	pyrimidine deoxyribonucleosides degradation
Alide2_3411	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Alide2_3413	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Alide2_3413	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Alide2_3413	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Alide2_3413	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Alide2_3416	PWY-2161	folate polyglutamylation
Alide2_3420	PWY-4983	L-citrulline-nitric oxide cycle
Alide2_3420	PWY-4984	urea cycle
Alide2_3420	PWY-5	canavanine biosynthesis
Alide2_3420	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide2_3420	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Alide2_3425	PWY-6703	preQ<sub>0</sub> biosynthesis
Alide2_3428	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide2_3428	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide2_3439	PWY-2942	L-lysine biosynthesis III
Alide2_3442	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide2_3459	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Alide2_3459	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Alide2_3459	PWY-5989	stearate biosynthesis II (bacteria and plants)
Alide2_3459	PWY-5994	palmitate biosynthesis I (animals and fungi)
Alide2_3459	PWY-6113	superpathway of mycolate biosynthesis
Alide2_3459	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Alide2_3459	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Alide2_3459	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide2_3459	PWYG-321	mycolate biosynthesis
Alide2_3464	PWY-7560	methylerythritol phosphate pathway II
Alide2_3471	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Alide2_3484	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide2_3505	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Alide2_3505	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Alide2_3512	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Alide2_3512	PWY-6148	tetrahydromethanopterin biosynthesis
Alide2_3512	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Alide2_3512	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Alide2_3516	PWY-4041	&gamma;-glutamyl cycle
Alide2_3516	PWY-5826	hypoglycin biosynthesis
Alide2_3517	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Alide2_3517	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Alide2_3517	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Alide2_3540	PWY-4981	L-proline biosynthesis II (from arginine)
Alide2_3540	PWY-4984	urea cycle
Alide2_3540	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Alide2_3548	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Alide2_3548	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Alide2_3556	PWY-6610	adenine and adenosine salvage IV
Alide2_3557	PWY-5692	allantoin degradation to glyoxylate II
Alide2_3557	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
Alide2_3576	PWY-2781	<i>cis</i>-zeatin biosynthesis
Alide2_3603	PWY-6654	phosphopantothenate biosynthesis III
Alide2_3606	PWY-6871	3-methylbutanol biosynthesis
Alide2_3620	PWY-7560	methylerythritol phosphate pathway II
Alide2_3621	PWY-7560	methylerythritol phosphate pathway II
Alide2_3640	PWY-702	L-methionine biosynthesis II
Alide2_3665	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
Alide2_3674	PWY-7158	L-phenylalanine degradation V
Alide2_3681	PWY-6829	tRNA methylation (yeast)
Alide2_3681	PWY-7285	methylwyosine biosynthesis
Alide2_3681	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Alide2_3715	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Alide2_3715	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Alide2_3720	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Alide2_3720	PWY-6167	flavin biosynthesis II (archaea)
Alide2_3720	PWY-6168	flavin biosynthesis III (fungi)
Alide2_3751	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Alide2_3751	PWY-7118	chitin degradation to ethanol
Alide2_3756	PWY-5392	reductive TCA cycle II
Alide2_3756	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Alide2_3756	PWY-5690	TCA cycle II (plants and fungi)
Alide2_3756	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide2_3756	PWY-6728	methylaspartate cycle
Alide2_3756	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_3756	PWY-7254	TCA cycle VII (acetate-producers)
Alide2_3756	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide2_3757	PWY-5392	reductive TCA cycle II
Alide2_3757	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Alide2_3757	PWY-5690	TCA cycle II (plants and fungi)
Alide2_3757	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide2_3757	PWY-6728	methylaspartate cycle
Alide2_3757	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_3757	PWY-7254	TCA cycle VII (acetate-producers)
Alide2_3757	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide2_3764	PWY-6936	seleno-amino acid biosynthesis
Alide2_3764	PWY-7274	D-cycloserine biosynthesis
Alide2_3766	PWY-2301	<i>myo</i>-inositol biosynthesis
Alide2_3766	PWY-4702	phytate degradation I
Alide2_3766	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
Alide2_3771	PWY-6891	thiazole biosynthesis II (Bacillus)
Alide2_3771	PWY-6892	thiazole biosynthesis I (E. coli)
Alide2_3771	PWY-7560	methylerythritol phosphate pathway II
Alide2_3785	PWY-2941	L-lysine biosynthesis II
Alide2_3785	PWY-2942	L-lysine biosynthesis III
Alide2_3785	PWY-5097	L-lysine biosynthesis VI
Alide2_3790	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Alide2_3790	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide2_3790	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide2_3790	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Alide2_3793	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Alide2_3793	PWY-7177	UTP and CTP dephosphorylation II
Alide2_3793	PWY-7185	UTP and CTP dephosphorylation I
Alide2_3794	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Alide2_3794	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Alide2_3796	PWY-1042	glycolysis IV (plant cytosol)
Alide2_3796	PWY-1622	formaldehyde assimilation I (serine pathway)
Alide2_3796	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Alide2_3796	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide2_3796	PWY-5723	Rubisco shunt
Alide2_3796	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Alide2_3796	PWY-6886	1-butanol autotrophic biosynthesis
Alide2_3796	PWY-6901	superpathway of glucose and xylose degradation
Alide2_3796	PWY-7003	glycerol degradation to butanol
Alide2_3796	PWY-7124	ethylene biosynthesis V (engineered)
Alide2_3796	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Alide2_3815	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Alide2_3825	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Alide2_3825	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Alide2_3825	PWY-6164	3-dehydroquinate biosynthesis I
Alide2_3836	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Alide2_3836	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide2_3836	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Alide2_3836	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Alide2_3836	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide2_3836	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide2_3836	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide2_3836	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Alide2_3837	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Alide2_3837	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide2_3837	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Alide2_3837	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Alide2_3837	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide2_3837	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Alide2_3837	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Alide2_3837	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Alide2_3880	PWY-6123	inosine-5'-phosphate biosynthesis I
Alide2_3880	PWY-6124	inosine-5'-phosphate biosynthesis II
Alide2_3880	PWY-7234	inosine-5'-phosphate biosynthesis III
Alide2_3881	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Alide2_3892	PWY-5686	UMP biosynthesis
Alide2_3893	PWY-5686	UMP biosynthesis
Alide2_3897	PWY-4202	arsenate detoxification I (glutaredoxin)
Alide2_3897	PWY-4621	arsenate detoxification II (glutaredoxin)
Alide2_3903	PWY-3781	aerobic respiration I (cytochrome c)
Alide2_3903	PWY-4521	arsenite oxidation I (respiratory)
Alide2_3903	PWY-6692	Fe(II) oxidation
Alide2_3903	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide2_3908	PWY-3781	aerobic respiration I (cytochrome c)
Alide2_3908	PWY-4521	arsenite oxidation I (respiratory)
Alide2_3908	PWY-6692	Fe(II) oxidation
Alide2_3908	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide2_3929	PWY-1361	benzoyl-CoA degradation I (aerobic)
Alide2_3929	PWY-2361	3-oxoadipate degradation
Alide2_3929	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
Alide2_3954	PWY-3781	aerobic respiration I (cytochrome c)
Alide2_3954	PWY-4521	arsenite oxidation I (respiratory)
Alide2_3954	PWY-6692	Fe(II) oxidation
Alide2_3954	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Alide2_3976	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Alide2_4000	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Alide2_4008	PWY-1042	glycolysis IV (plant cytosol)
Alide2_4008	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide2_4008	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Alide2_4008	PWY-7003	glycerol degradation to butanol
Alide2_4022	PWY-3781	aerobic respiration I (cytochrome c)
Alide2_4022	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Alide2_4022	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Alide2_4022	PWY-6692	Fe(II) oxidation
Alide2_4031	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide2_4031	PWY-6606	guanosine nucleotides degradation II
Alide2_4031	PWY-6608	guanosine nucleotides degradation III
Alide2_4031	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Alide2_4034	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide2_4034	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Alide2_4034	PWY-6538	caffeine degradation III (bacteria, via demethylation)
Alide2_4034	PWY-6596	adenosine nucleotides degradation I
Alide2_4034	PWY-6606	guanosine nucleotides degradation II
Alide2_4034	PWY-6607	guanosine nucleotides degradation I
Alide2_4034	PWY-6608	guanosine nucleotides degradation III
Alide2_4034	PWY-6999	theophylline degradation
Alide2_4035	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide2_4035	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Alide2_4035	PWY-6538	caffeine degradation III (bacteria, via demethylation)
Alide2_4035	PWY-6596	adenosine nucleotides degradation I
Alide2_4035	PWY-6606	guanosine nucleotides degradation II
Alide2_4035	PWY-6607	guanosine nucleotides degradation I
Alide2_4035	PWY-6608	guanosine nucleotides degradation III
Alide2_4035	PWY-6999	theophylline degradation
Alide2_4044	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Alide2_4048	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Alide2_4048	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Alide2_4057	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide2_4057	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide2_4058	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide2_4058	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide2_4059	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Alide2_4059	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Alide2_4059	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Alide2_4059	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Alide2_4061	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide2_4061	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide2_4062	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Alide2_4062	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Alide2_4062	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Alide2_4063	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide2_4063	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide2_4087	PWY-2941	L-lysine biosynthesis II
Alide2_4087	PWY-5097	L-lysine biosynthesis VI
Alide2_4091	PWY-6936	seleno-amino acid biosynthesis
Alide2_4103	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Alide2_4103	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Alide2_4108	PWY-723	alkylnitronates degradation
Alide2_4116	PWY-1361	benzoyl-CoA degradation I (aerobic)
Alide2_4116	PWY-5109	2-methylbutanoate biosynthesis
Alide2_4116	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Alide2_4116	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Alide2_4116	PWY-5177	glutaryl-CoA degradation
Alide2_4116	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide2_4116	PWY-6435	4-hydroxybenzoate biosynthesis V
Alide2_4116	PWY-6583	pyruvate fermentation to butanol I
Alide2_4116	PWY-6863	pyruvate fermentation to hexanol
Alide2_4116	PWY-6883	pyruvate fermentation to butanol II
Alide2_4116	PWY-6944	androstenedione degradation
Alide2_4116	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Alide2_4116	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Alide2_4116	PWY-7007	methyl ketone biosynthesis
Alide2_4116	PWY-7046	4-coumarate degradation (anaerobic)
Alide2_4116	PWY-7094	fatty acid salvage
Alide2_4116	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Alide2_4116	PWY-735	jasmonic acid biosynthesis
Alide2_4116	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Alide2_4125	PWY-5686	UMP biosynthesis
Alide2_4141	PWY-5074	mevalonate degradation
Alide2_4146	PWY-4381	fatty acid biosynthesis initiation I
Alide2_4146	PWY-5743	3-hydroxypropanoate cycle
Alide2_4146	PWY-5744	glyoxylate assimilation
Alide2_4146	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide2_4146	PWY-6679	jadomycin biosynthesis
Alide2_4146	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide2_4150	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Alide2_4150	PWY-7494	choline degradation IV
Alide2_4155	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Alide2_4155	PWY-7494	choline degradation IV
Alide2_4158	PWY-6174	mevalonate pathway II (archaea)
Alide2_4158	PWY-7391	isoprene biosynthesis II (engineered)
Alide2_4158	PWY-7524	mevalonate pathway III (archaea)
Alide2_4158	PWY-922	mevalonate pathway I
Alide2_4178	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Alide2_4178	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Alide2_4178	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Alide2_4178	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Alide2_4200	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Alide2_4211	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Alide2_4211	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Alide2_4236	PWY-723	alkylnitronates degradation
Alide2_4243	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Alide2_4243	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Alide2_4251	PWY-6167	flavin biosynthesis II (archaea)
Alide2_4257	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Alide2_4257	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Alide2_4271	PWY-6803	phosphatidylcholine acyl editing
Alide2_4271	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
Alide2_4271	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
Alide2_4271	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Alide2_4281	PWY-6700	queuosine biosynthesis
Alide2_4294	PWY-3162	L-tryptophan degradation V (side chain pathway)
Alide2_4294	PWY-5057	L-valine degradation II
Alide2_4294	PWY-5076	L-leucine degradation III
Alide2_4294	PWY-5078	L-isoleucine degradation II
Alide2_4294	PWY-5079	L-phenylalanine degradation III
Alide2_4294	PWY-5082	L-methionine degradation III
Alide2_4294	PWY-5480	pyruvate fermentation to ethanol I
Alide2_4294	PWY-5486	pyruvate fermentation to ethanol II
Alide2_4294	PWY-5751	phenylethanol biosynthesis
Alide2_4294	PWY-6028	acetoin degradation
Alide2_4294	PWY-6313	serotonin degradation
Alide2_4294	PWY-6333	acetaldehyde biosynthesis I
Alide2_4294	PWY-6342	noradrenaline and adrenaline degradation
Alide2_4294	PWY-6587	pyruvate fermentation to ethanol III
Alide2_4294	PWY-6802	salidroside biosynthesis
Alide2_4294	PWY-6871	3-methylbutanol biosynthesis
Alide2_4294	PWY-7013	L-1,2-propanediol degradation
Alide2_4294	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Alide2_4294	PWY-7118	chitin degradation to ethanol
Alide2_4294	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Alide2_4294	PWY-7557	dehydrodiconiferyl alcohol degradation
Alide2_4335	PWY-1361	benzoyl-CoA degradation I (aerobic)
Alide2_4335	PWY-5109	2-methylbutanoate biosynthesis
Alide2_4335	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Alide2_4335	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Alide2_4335	PWY-5177	glutaryl-CoA degradation
Alide2_4335	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide2_4335	PWY-6435	4-hydroxybenzoate biosynthesis V
Alide2_4335	PWY-6583	pyruvate fermentation to butanol I
Alide2_4335	PWY-6863	pyruvate fermentation to hexanol
Alide2_4335	PWY-6883	pyruvate fermentation to butanol II
Alide2_4335	PWY-6944	androstenedione degradation
Alide2_4335	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Alide2_4335	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Alide2_4335	PWY-7007	methyl ketone biosynthesis
Alide2_4335	PWY-7046	4-coumarate degradation (anaerobic)
Alide2_4335	PWY-7094	fatty acid salvage
Alide2_4335	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Alide2_4335	PWY-735	jasmonic acid biosynthesis
Alide2_4335	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Alide2_4368	PWY-4261	glycerol degradation I
Alide2_4368	PWY-6118	glycerol-3-phosphate shuttle
Alide2_4368	PWY-6952	glycerophosphodiester degradation
Alide2_4370	PWY-4261	glycerol degradation I
Alide2_4371	PWY-3341	L-proline biosynthesis III
Alide2_4371	PWY-4981	L-proline biosynthesis II (from arginine)
Alide2_4371	PWY-6344	L-ornithine degradation II (Stickland reaction)
Alide2_4379	PWY-6700	queuosine biosynthesis
Alide2_4381	PWY-4041	&gamma;-glutamyl cycle
Alide2_4381	PWY-5826	hypoglycin biosynthesis
Alide2_4388	PWY-5958	acridone alkaloid biosynthesis
Alide2_4388	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Alide2_4388	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Alide2_4394	PWY-3461	L-tyrosine biosynthesis II
Alide2_4394	PWY-3462	L-phenylalanine biosynthesis II
Alide2_4394	PWY-6120	L-tyrosine biosynthesis III
Alide2_4394	PWY-6627	salinosporamide A biosynthesis
Alide2_4395	PWY-5958	acridone alkaloid biosynthesis
Alide2_4395	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Alide2_4395	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Alide2_4398	PWY-181	photorespiration
Alide2_4400	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Alide2_4400	PWY-5723	Rubisco shunt
Alide2_4404	PWY-6840	homoglutathione biosynthesis
Alide2_4404	PWY-7255	ergothioneine biosynthesis I (bacteria)
Alide2_4405	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Alide2_4405	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Alide2_4405	PWY-6896	thiamin salvage I
Alide2_4405	PWY-6897	thiamin salvage II
Alide2_4415	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Alide2_4415	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Alide2_4415	PWY-5989	stearate biosynthesis II (bacteria and plants)
Alide2_4415	PWY-6113	superpathway of mycolate biosynthesis
Alide2_4415	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Alide2_4415	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Alide2_4415	PWY-7096	triclosan resistance
Alide2_4415	PWYG-321	mycolate biosynthesis
Alide2_4420	PWY-1281	sulfoacetaldehyde degradation I
Alide2_4420	PWY-5482	pyruvate fermentation to acetate II
Alide2_4420	PWY-5485	pyruvate fermentation to acetate IV
Alide2_4420	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide2_4420	PWY-6637	sulfolactate degradation II
Alide2_4421	PWY-5482	pyruvate fermentation to acetate II
Alide2_4421	PWY-5485	pyruvate fermentation to acetate IV
Alide2_4421	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide2_4422	PWY-5269	cardiolipin biosynthesis II
Alide2_4422	PWY-5668	cardiolipin biosynthesis I
Alide2_4446	PWY-6728	methylaspartate cycle
Alide2_4446	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_4446	PWY-7118	chitin degradation to ethanol
Alide2_4446	PWY-7294	xylose degradation IV
Alide2_4446	PWY-7295	L-arabinose degradation IV
Alide2_4473	PWY-2941	L-lysine biosynthesis II
Alide2_4473	PWY-2942	L-lysine biosynthesis III
Alide2_4473	PWY-5097	L-lysine biosynthesis VI
Alide2_4479	PWY-6123	inosine-5'-phosphate biosynthesis I
Alide2_4479	PWY-6124	inosine-5'-phosphate biosynthesis II
Alide2_4479	PWY-7234	inosine-5'-phosphate biosynthesis III
Alide2_4481	PWY-6123	inosine-5'-phosphate biosynthesis I
Alide2_4481	PWY-7234	inosine-5'-phosphate biosynthesis III
Alide2_4487	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Alide2_4487	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Alide2_4499	PWY-1042	glycolysis IV (plant cytosol)
Alide2_4499	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Alide2_4499	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide2_4499	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Alide2_4499	PWY-7385	1,3-propanediol biosynthesis (engineered)
Alide2_4500	PWY-1042	glycolysis IV (plant cytosol)
Alide2_4500	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Alide2_4500	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide2_4500	PWY-5723	Rubisco shunt
Alide2_4500	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Alide2_4500	PWY-6886	1-butanol autotrophic biosynthesis
Alide2_4500	PWY-6901	superpathway of glucose and xylose degradation
Alide2_4500	PWY-7003	glycerol degradation to butanol
Alide2_4500	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Alide2_4500	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Alide2_4510	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Alide2_4510	PWY-5723	Rubisco shunt
Alide2_4510	PWY-6891	thiazole biosynthesis II (Bacillus)
Alide2_4510	PWY-6892	thiazole biosynthesis I (E. coli)
Alide2_4510	PWY-6901	superpathway of glucose and xylose degradation
Alide2_4510	PWY-7560	methylerythritol phosphate pathway II
Alide2_4511	PWY-1042	glycolysis IV (plant cytosol)
Alide2_4511	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide2_4511	PWY-6901	superpathway of glucose and xylose degradation
Alide2_4511	PWY-7003	glycerol degradation to butanol
Alide2_4535	PWY-5392	reductive TCA cycle II
Alide2_4535	PWY-5537	pyruvate fermentation to acetate V
Alide2_4535	PWY-5538	pyruvate fermentation to acetate VI
Alide2_4535	PWY-5690	TCA cycle II (plants and fungi)
Alide2_4535	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide2_4535	PWY-6728	methylaspartate cycle
Alide2_4535	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_4535	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide2_4540	PWY-6424	Alide2_4540
Alide2_4541	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Alide2_4541	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Alide2_4551	PWY-6654	phosphopantothenate biosynthesis III
Alide2_4555	PWY-6832	2-aminoethylphosphonate degradation II
Alide2_4564	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Alide2_4587	PWY-6123	inosine-5'-phosphate biosynthesis I
Alide2_4587	PWY-6124	inosine-5'-phosphate biosynthesis II
Alide2_4587	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Alide2_4587	PWY-7234	inosine-5'-phosphate biosynthesis III
Alide2_4605	PWY-5392	reductive TCA cycle II
Alide2_4605	PWY-5537	pyruvate fermentation to acetate V
Alide2_4605	PWY-5538	pyruvate fermentation to acetate VI
Alide2_4605	PWY-5690	TCA cycle II (plants and fungi)
Alide2_4605	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide2_4605	PWY-6728	methylaspartate cycle
Alide2_4605	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_4605	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide2_4606	PWY-5392	reductive TCA cycle II
Alide2_4606	PWY-5537	pyruvate fermentation to acetate V
Alide2_4606	PWY-5538	pyruvate fermentation to acetate VI
Alide2_4606	PWY-5690	TCA cycle II (plants and fungi)
Alide2_4606	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide2_4606	PWY-6728	methylaspartate cycle
Alide2_4606	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_4606	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide2_4607	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Alide2_4607	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Alide2_4615	PWY-1042	glycolysis IV (plant cytosol)
Alide2_4615	PWY-5484	glycolysis II (from fructose 6-phosphate)
Alide2_4615	PWY-6886	1-butanol autotrophic biosynthesis
Alide2_4615	PWY-6901	superpathway of glucose and xylose degradation
Alide2_4615	PWY-7003	glycerol degradation to butanol
Alide2_4619	PWY-5686	UMP biosynthesis
Alide2_4638	PWY-4381	fatty acid biosynthesis initiation I
Alide2_4638	PWY-5743	3-hydroxypropanoate cycle
Alide2_4638	PWY-5744	glyoxylate assimilation
Alide2_4638	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Alide2_4638	PWY-6679	jadomycin biosynthesis
Alide2_4638	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Alide2_4640	PWY-5392	reductive TCA cycle II
Alide2_4640	PWY-5537	pyruvate fermentation to acetate V
Alide2_4640	PWY-5538	pyruvate fermentation to acetate VI
Alide2_4640	PWY-5690	TCA cycle II (plants and fungi)
Alide2_4640	PWY-5913	TCA cycle VI (obligate autotrophs)
Alide2_4640	PWY-6728	methylaspartate cycle
Alide2_4640	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Alide2_4640	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Alide2_4653	PWY-6167	flavin biosynthesis II (archaea)
Alide2_4653	PWY-6168	flavin biosynthesis III (fungi)
Alide2_4653	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Alide2_4670	PWY-723	alkylnitronates degradation
Alide2_4683	PWY-4041	&gamma;-glutamyl cycle
Alide2_4683	PWY-5826	hypoglycin biosynthesis
Alide2_4694	PWY-5642	2,4-dinitrotoluene degradation
Alide2_4694	PWY-6373	acrylate degradation
Alide2_4704	PWY-1281	sulfoacetaldehyde degradation I
Alide2_4704	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Alide2_4704	PWY-5482	pyruvate fermentation to acetate II
Alide2_4704	PWY-5485	pyruvate fermentation to acetate IV
Alide2_4704	PWY-5497	purine nucleobases degradation II (anaerobic)
Alide2_4704	PWY-6637	sulfolactate degradation II
Alide2_4704	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Alide2_4718	PWY-5344	L-homocysteine biosynthesis
Alide2_4724	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Alide2_4724	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Alide2_4727	PWY-6605	adenine and adenosine salvage II
Alide2_4727	PWY-6610	adenine and adenosine salvage IV
Alide2_4734	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Alide2_4734	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Alide2_4736	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
