TC41_0014	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
TC41_0014	PWY-6596	adenosine nucleotides degradation I
TC41_0014	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TC41_0015	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
TC41_0016	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
TC41_0017	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
TC41_0028	PWY-4381	fatty acid biosynthesis initiation I
TC41_0033	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TC41_0072	PWY-4261	glycerol degradation I
TC41_0073	PWY-4261	glycerol degradation I
TC41_0073	PWY-6118	glycerol-3-phosphate shuttle
TC41_0073	PWY-6952	glycerophosphodiester degradation
TC41_0085	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TC41_0089	PWY-7199	pyrimidine deoxyribonucleosides salvage
TC41_0099	PWY-4041	&gamma;-glutamyl cycle
TC41_0099	PWY-5826	hypoglycin biosynthesis
TC41_0105	PWY-3801	sucrose degradation II (sucrose synthase)
TC41_0105	PWY-5054	sorbitol biosynthesis I
TC41_0105	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
TC41_0105	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
TC41_0105	PWY-5659	GDP-mannose biosynthesis
TC41_0105	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TC41_0105	PWY-621	sucrose degradation III (sucrose invertase)
TC41_0105	PWY-622	starch biosynthesis
TC41_0105	PWY-6531	mannitol cycle
TC41_0105	PWY-6981	chitin biosynthesis
TC41_0105	PWY-7238	sucrose biosynthesis II
TC41_0105	PWY-7347	sucrose biosynthesis III
TC41_0105	PWY-7385	1,3-propanediol biosynthesis (engineered)
TC41_0106	PWY-2723	trehalose degradation V
TC41_0106	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
TC41_0106	PWY-5661	GDP-glucose biosynthesis
TC41_0106	PWY-7238	sucrose biosynthesis II
TC41_0106	PWY-7385	1,3-propanediol biosynthesis (engineered)
TC41_0115	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
TC41_0115	PWY-5389	3-methylthiopropanoate biosynthesis
TC41_0117	PWY-5532	adenosine nucleotides degradation IV
TC41_0117	PWY-5723	Rubisco shunt
TC41_0120	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
TC41_0160	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TC41_0160	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TC41_0160	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
TC41_0160	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
TC41_0160	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TC41_0160	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TC41_0173	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TC41_0173	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TC41_0173	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TC41_0173	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TC41_0173	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TC41_0173	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TC41_0173	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
TC41_0173	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
TC41_0239	PWY-7052	cyanophycin metabolism
TC41_0240	PWY-7052	cyanophycin metabolism
TC41_0241	PWY-7560	methylerythritol phosphate pathway II
TC41_0245	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
TC41_0259	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TC41_0265	PWY-6599	guanine and guanosine salvage II
TC41_0265	PWY-6609	adenine and adenosine salvage III
TC41_0265	PWY-6610	adenine and adenosine salvage IV
TC41_0265	PWY-6620	guanine and guanosine salvage
TC41_0270	PWY-6614	tetrahydrofolate biosynthesis
TC41_0271	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TC41_0271	PWY-6148	tetrahydromethanopterin biosynthesis
TC41_0271	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
TC41_0271	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
TC41_0288	PWY-7310	D-glucosaminate degradation
TC41_0290	PWY-7310	D-glucosaminate degradation
TC41_0297	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TC41_0302	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TC41_0311	PWY-5350	thiosulfate disproportionation III (rhodanese)
TC41_0322	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
TC41_0322	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
TC41_0322	PWY-6936	seleno-amino acid biosynthesis
TC41_0322	PWY-702	L-methionine biosynthesis II
TC41_0345	PWY-6871	3-methylbutanol biosynthesis
TC41_0405	PWY-5155	&beta;-alanine biosynthesis III
TC41_0436	PWY-31	canavanine degradation
TC41_0436	PWY-4984	urea cycle
TC41_0436	PWY-6305	putrescine biosynthesis IV
TC41_0436	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
TC41_0437	PWY-3341	L-proline biosynthesis III
TC41_0437	PWY-4981	L-proline biosynthesis II (from arginine)
TC41_0437	PWY-6344	L-ornithine degradation II (Stickland reaction)
TC41_0437	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
TC41_0438	PWY-6853	ethylene biosynthesis II (microbes)
TC41_0460	PWY-7431	aromatic biogenic amine degradation (bacteria)
TC41_0462	PWY-2941	L-lysine biosynthesis II
TC41_0462	PWY-2942	L-lysine biosynthesis III
TC41_0462	PWY-5097	L-lysine biosynthesis VI
TC41_0469	PWY-5659	GDP-mannose biosynthesis
TC41_0469	PWY-6073	alginate biosynthesis I (algal)
TC41_0469	PWY-6082	alginate biosynthesis II (bacterial)
TC41_0469	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
TC41_0479	PWY-6012	acyl carrier protein metabolism I
TC41_0479	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
TC41_0480	PWY-6938	NADH repair
TC41_0482	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TC41_0485	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
TC41_0491	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
TC41_0491	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
TC41_0491	PWY-6896	thiamin salvage I
TC41_0491	PWY-6897	thiamin salvage II
TC41_0519	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TC41_0520	PWY-6123	inosine-5'-phosphate biosynthesis I
TC41_0520	PWY-6124	inosine-5'-phosphate biosynthesis II
TC41_0520	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TC41_0520	PWY-7234	inosine-5'-phosphate biosynthesis III
TC41_0521	PWY-6123	inosine-5'-phosphate biosynthesis I
TC41_0521	PWY-6124	inosine-5'-phosphate biosynthesis II
TC41_0521	PWY-7234	inosine-5'-phosphate biosynthesis III
TC41_0522	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TC41_0522	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TC41_0522	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TC41_0523	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TC41_0523	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TC41_0523	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TC41_0524	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TC41_0524	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TC41_0524	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TC41_0525	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TC41_0525	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TC41_0525	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TC41_0525	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
TC41_0526	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TC41_0526	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TC41_0526	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TC41_0527	PWY-6123	inosine-5'-phosphate biosynthesis I
TC41_0527	PWY-6124	inosine-5'-phosphate biosynthesis II
TC41_0527	PWY-7234	inosine-5'-phosphate biosynthesis III
TC41_0528	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TC41_0528	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TC41_0528	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TC41_0532	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
TC41_0532	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
TC41_0572	PWY-5642	2,4-dinitrotoluene degradation
TC41_0572	PWY-6373	acrylate degradation
TC41_0573	PWY-5642	2,4-dinitrotoluene degradation
TC41_0573	PWY-6373	acrylate degradation
TC41_0585	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
TC41_0585	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
TC41_0604	PWY-5340	sulfate activation for sulfonation
TC41_0607	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TC41_0627	PWY-3781	aerobic respiration I (cytochrome c)
TC41_0627	PWY-4521	arsenite oxidation I (respiratory)
TC41_0627	PWY-6692	Fe(II) oxidation
TC41_0627	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TC41_0656	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TC41_0677	PWY-4261	glycerol degradation I
TC41_0704	PWY-2941	L-lysine biosynthesis II
TC41_0704	PWY-2942	L-lysine biosynthesis III
TC41_0704	PWY-5097	L-lysine biosynthesis VI
TC41_0705	PWY-5392	reductive TCA cycle II
TC41_0705	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
TC41_0705	PWY-5690	TCA cycle II (plants and fungi)
TC41_0705	PWY-5913	TCA cycle VI (obligate autotrophs)
TC41_0705	PWY-6728	methylaspartate cycle
TC41_0705	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TC41_0705	PWY-7254	TCA cycle VII (acetate-producers)
TC41_0705	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TC41_0709	PWY-6556	pyrimidine ribonucleosides salvage II
TC41_0709	PWY-7181	pyrimidine deoxyribonucleosides degradation
TC41_0709	PWY-7193	pyrimidine ribonucleosides salvage I
TC41_0709	PWY-7199	pyrimidine deoxyribonucleosides salvage
TC41_0712	PWY-3341	L-proline biosynthesis III
TC41_0712	PWY-4981	L-proline biosynthesis II (from arginine)
TC41_0712	PWY-6344	L-ornithine degradation II (Stickland reaction)
TC41_0713	PWY-1042	glycolysis IV (plant cytosol)
TC41_0713	PWY-5484	glycolysis II (from fructose 6-phosphate)
TC41_0713	PWY-6886	1-butanol autotrophic biosynthesis
TC41_0713	PWY-6901	superpathway of glucose and xylose degradation
TC41_0713	PWY-7003	glycerol degradation to butanol
TC41_0714	PWY-1042	glycolysis IV (plant cytosol)
TC41_0714	PWY-5484	glycolysis II (from fructose 6-phosphate)
TC41_0714	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TC41_0714	PWY-7003	glycerol degradation to butanol
TC41_0715	PWY-1042	glycolysis IV (plant cytosol)
TC41_0715	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TC41_0715	PWY-5484	glycolysis II (from fructose 6-phosphate)
TC41_0715	PWY-5723	Rubisco shunt
TC41_0715	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TC41_0715	PWY-6886	1-butanol autotrophic biosynthesis
TC41_0715	PWY-6901	superpathway of glucose and xylose degradation
TC41_0715	PWY-7003	glycerol degradation to butanol
TC41_0715	PWY-7124	ethylene biosynthesis V (engineered)
TC41_0715	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
TC41_0716	PWY-1042	glycolysis IV (plant cytosol)
TC41_0716	PWY-1622	formaldehyde assimilation I (serine pathway)
TC41_0716	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TC41_0716	PWY-5484	glycolysis II (from fructose 6-phosphate)
TC41_0716	PWY-5723	Rubisco shunt
TC41_0716	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TC41_0716	PWY-6886	1-butanol autotrophic biosynthesis
TC41_0716	PWY-6901	superpathway of glucose and xylose degradation
TC41_0716	PWY-7003	glycerol degradation to butanol
TC41_0716	PWY-7124	ethylene biosynthesis V (engineered)
TC41_0716	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
TC41_0738	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
TC41_0738	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
TC41_0738	PWY-6936	seleno-amino acid biosynthesis
TC41_0738	PWY-702	L-methionine biosynthesis II
TC41_0744	PWY-5169	cyanurate degradation
TC41_0744	PWY-5703	urea degradation I
TC41_0745	PWY-5169	cyanurate degradation
TC41_0745	PWY-5703	urea degradation I
TC41_0745	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TC41_0766	PWY-6527	stachyose degradation
TC41_0775	PWY-5747	2-methylcitrate cycle II
TC41_0783	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TC41_0783	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TC41_0783	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TC41_0783	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TC41_0783	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TC41_0783	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TC41_0783	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
TC41_0783	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
TC41_0797	PWY-5381	pyridine nucleotide cycling (plants)
TC41_0801	PWY-5162	2-oxopentenoate degradation
TC41_0801	PWY-5436	L-threonine degradation IV
TC41_0801	PWY-5480	pyruvate fermentation to ethanol I
TC41_0801	PWY-6587	pyruvate fermentation to ethanol III
TC41_0801	PWY-7085	triethylamine degradation
TC41_0801	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
TC41_0802	PWY-5162	2-oxopentenoate degradation
TC41_0809	PWY-1341	phenylacetate degradation II (anaerobic)
TC41_0809	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
TC41_0844	PWY-1881	formate oxidation to CO<sub>2</sub>
TC41_0844	PWY-5497	purine nucleobases degradation II (anaerobic)
TC41_0844	PWY-6696	oxalate degradation III
TC41_0855	PWY-5101	L-isoleucine biosynthesis II
TC41_0855	PWY-6871	3-methylbutanol biosynthesis
TC41_0858	PWY-5913	TCA cycle VI (obligate autotrophs)
TC41_0858	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
TC41_0858	PWY-6638	sulfolactate degradation III
TC41_0858	PWY-6642	(<i>R</i>)-cysteate degradation
TC41_0858	PWY-6643	coenzyme M biosynthesis II
TC41_0858	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
TC41_0858	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
TC41_0858	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TC41_0872	PWY-6906	chitin derivatives degradation
TC41_0872	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
TC41_0872	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
TC41_0873	PWY-5278	sulfite oxidation III
TC41_0873	PWY-5340	sulfate activation for sulfonation
TC41_0873	PWY-6683	sulfate reduction III (assimilatory)
TC41_0873	PWY-6932	selenate reduction
TC41_0874	PWY-5451	acetone degradation I (to methylglyoxal)
TC41_0874	PWY-6588	pyruvate fermentation to acetone
TC41_0874	PWY-6876	isopropanol biosynthesis
TC41_0874	PWY-7466	acetone degradation III (to propane-1,2-diol)
TC41_0875	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TC41_0894	PWY-5392	reductive TCA cycle II
TC41_0894	PWY-5537	pyruvate fermentation to acetate V
TC41_0894	PWY-5538	pyruvate fermentation to acetate VI
TC41_0894	PWY-5690	TCA cycle II (plants and fungi)
TC41_0894	PWY-5913	TCA cycle VI (obligate autotrophs)
TC41_0894	PWY-6728	methylaspartate cycle
TC41_0894	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TC41_0894	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TC41_0900	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
TC41_0900	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
TC41_0901	PWY-7310	D-glucosaminate degradation
TC41_0903	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TC41_0922	PWY-5941	glycogen degradation II (eukaryotic)
TC41_0922	PWY-6724	starch degradation II
TC41_0922	PWY-6737	starch degradation V
TC41_0922	PWY-7238	sucrose biosynthesis II
TC41_0927	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TC41_0927	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TC41_0927	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TC41_0931	PWY-7560	methylerythritol phosphate pathway II
TC41_0947	PWY-6167	flavin biosynthesis II (archaea)
TC41_0947	PWY-6168	flavin biosynthesis III (fungi)
TC41_0947	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TC41_0948	PWY-6167	flavin biosynthesis II (archaea)
TC41_0948	PWY-6168	flavin biosynthesis III (fungi)
TC41_0948	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
TC41_0949	PWY-6167	flavin biosynthesis II (archaea)
TC41_0949	PWY-6168	flavin biosynthesis III (fungi)
TC41_0953	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TC41_0953	PWY-5723	Rubisco shunt
TC41_0953	PWY-6891	thiazole biosynthesis II (Bacillus)
TC41_0953	PWY-6892	thiazole biosynthesis I (E. coli)
TC41_0953	PWY-6901	superpathway of glucose and xylose degradation
TC41_0953	PWY-7560	methylerythritol phosphate pathway II
TC41_0962	PWY-5350	thiosulfate disproportionation III (rhodanese)
TC41_0975	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TC41_0975	PWY-6148	tetrahydromethanopterin biosynthesis
TC41_0975	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
TC41_0975	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
TC41_0988	PWY-5663	tetrahydrobiopterin biosynthesis I
TC41_0988	PWY-5664	tetrahydrobiopterin biosynthesis II
TC41_0988	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TC41_0988	PWY-6703	preQ<sub>0</sub> biosynthesis
TC41_0988	PWY-6983	tetrahydrobiopterin biosynthesis III
TC41_0988	PWY-7442	drosopterin and aurodrosopterin biosynthesis
TC41_0990	PWY-6854	ethylene biosynthesis III (microbes)
TC41_0991	PWY-5971	palmitate biosynthesis II (bacteria and plants)
TC41_0991	PWY-5973	<i>cis</i>-vaccenate biosynthesis
TC41_0991	PWY-5989	stearate biosynthesis II (bacteria and plants)
TC41_0991	PWY-6113	superpathway of mycolate biosynthesis
TC41_0991	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
TC41_0991	PWY-6519	8-amino-7-oxononanoate biosynthesis I
TC41_0991	PWY-7096	triclosan resistance
TC41_0991	PWYG-321	mycolate biosynthesis
TC41_0992	PWY-5686	UMP biosynthesis
TC41_1001	PWY-6823	molybdenum cofactor biosynthesis
TC41_1001	PWY-6891	thiazole biosynthesis II (Bacillus)
TC41_1001	PWY-6892	thiazole biosynthesis I (E. coli)
TC41_1001	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
TC41_1010	PWY-5381	pyridine nucleotide cycling (plants)
TC41_1011	PWY-7560	methylerythritol phosphate pathway II
TC41_1039	PWY-702	L-methionine biosynthesis II
TC41_1096	PWY-723	alkylnitronates degradation
TC41_1110	PWY-6807	xyloglucan degradation II (exoglucanase)
TC41_1119	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
TC41_1119	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
TC41_1127	PWY-5958	acridone alkaloid biosynthesis
TC41_1127	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
TC41_1127	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
TC41_1128	PWY-5958	acridone alkaloid biosynthesis
TC41_1128	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
TC41_1128	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
TC41_1130	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TC41_1130	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TC41_1132	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TC41_1132	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TC41_1137	PWY-4981	L-proline biosynthesis II (from arginine)
TC41_1137	PWY-4984	urea cycle
TC41_1137	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TC41_1138	PWY-4983	L-citrulline-nitric oxide cycle
TC41_1138	PWY-4984	urea cycle
TC41_1138	PWY-5	canavanine biosynthesis
TC41_1138	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TC41_1138	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TC41_1139	PWY-4983	L-citrulline-nitric oxide cycle
TC41_1139	PWY-4984	urea cycle
TC41_1139	PWY-5	canavanine biosynthesis
TC41_1139	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TC41_1139	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TC41_1143	PWY-2941	L-lysine biosynthesis II
TC41_1143	PWY-2942	L-lysine biosynthesis III
TC41_1143	PWY-5097	L-lysine biosynthesis VI
TC41_1143	PWY-6559	spermidine biosynthesis II
TC41_1143	PWY-6562	norspermidine biosynthesis
TC41_1143	PWY-7153	grixazone biosynthesis
TC41_1172	PWY-1361	benzoyl-CoA degradation I (aerobic)
TC41_1172	PWY-5109	2-methylbutanoate biosynthesis
TC41_1172	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
TC41_1172	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
TC41_1172	PWY-5177	glutaryl-CoA degradation
TC41_1172	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TC41_1172	PWY-6435	4-hydroxybenzoate biosynthesis V
TC41_1172	PWY-6583	pyruvate fermentation to butanol I
TC41_1172	PWY-6863	pyruvate fermentation to hexanol
TC41_1172	PWY-6883	pyruvate fermentation to butanol II
TC41_1172	PWY-6944	androstenedione degradation
TC41_1172	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
TC41_1172	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
TC41_1172	PWY-7007	methyl ketone biosynthesis
TC41_1172	PWY-7046	4-coumarate degradation (anaerobic)
TC41_1172	PWY-7094	fatty acid salvage
TC41_1172	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TC41_1172	PWY-735	jasmonic acid biosynthesis
TC41_1172	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
TC41_1177	PWY-6672	<i>cis</i>-genanyl-CoA degradation
TC41_1177	PWY-7118	chitin degradation to ethanol
TC41_1184	PWY-6823	molybdenum cofactor biosynthesis
TC41_1184	PWY-6891	thiazole biosynthesis II (Bacillus)
TC41_1184	PWY-6892	thiazole biosynthesis I (E. coli)
TC41_1184	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
TC41_1198	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TC41_1198	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TC41_1198	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TC41_1199	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TC41_1199	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TC41_1201	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TC41_1201	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
TC41_1201	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TC41_1201	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TC41_1202	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TC41_1202	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TC41_1203	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TC41_1203	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TC41_1207	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TC41_1207	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TC41_1222	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TC41_1231	PWY-7183	pyrimidine nucleobases salvage I
TC41_1232	PWY-5686	UMP biosynthesis
TC41_1233	PWY-5686	UMP biosynthesis
TC41_1234	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TC41_1234	PWY-5686	UMP biosynthesis
TC41_1234	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TC41_1235	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TC41_1235	PWY-5686	UMP biosynthesis
TC41_1235	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TC41_1236	PWY-5686	UMP biosynthesis
TC41_1237	PWY-5686	UMP biosynthesis
TC41_1256	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TC41_1256	PWY-5723	Rubisco shunt
TC41_1260	PWY-5669	phosphatidylethanolamine biosynthesis I
TC41_1263	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TC41_1271	PWY-4381	fatty acid biosynthesis initiation I
TC41_1271	PWY-6799	fatty acid biosynthesis (plant mitochondria)
TC41_1271	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TC41_1272	PWY-5367	petroselinate biosynthesis
TC41_1272	PWY-5971	palmitate biosynthesis II (bacteria and plants)
TC41_1272	PWY-5973	<i>cis</i>-vaccenate biosynthesis
TC41_1272	PWY-5989	stearate biosynthesis II (bacteria and plants)
TC41_1272	PWY-5994	palmitate biosynthesis I (animals and fungi)
TC41_1272	PWY-6113	superpathway of mycolate biosynthesis
TC41_1272	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
TC41_1272	PWY-6519	8-amino-7-oxononanoate biosynthesis I
TC41_1272	PWY-6951	TC41_1272
TC41_1272	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
TC41_1272	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TC41_1272	PWYG-321	mycolate biosynthesis
TC41_1284	PWY-6829	tRNA methylation (yeast)
TC41_1284	PWY-7285	methylwyosine biosynthesis
TC41_1284	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
TC41_1287	PWY-5958	acridone alkaloid biosynthesis
TC41_1287	PWY-6543	4-aminobenzoate biosynthesis
TC41_1287	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
TC41_1287	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
TC41_1287	PWY-6722	candicidin biosynthesis
TC41_1305	PWY-5392	reductive TCA cycle II
TC41_1305	PWY-5537	pyruvate fermentation to acetate V
TC41_1305	PWY-5538	pyruvate fermentation to acetate VI
TC41_1305	PWY-5690	TCA cycle II (plants and fungi)
TC41_1305	PWY-5913	TCA cycle VI (obligate autotrophs)
TC41_1305	PWY-6728	methylaspartate cycle
TC41_1305	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TC41_1305	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TC41_1307	PWY-5392	reductive TCA cycle II
TC41_1307	PWY-5537	pyruvate fermentation to acetate V
TC41_1307	PWY-5538	pyruvate fermentation to acetate VI
TC41_1307	PWY-5690	TCA cycle II (plants and fungi)
TC41_1307	PWY-5913	TCA cycle VI (obligate autotrophs)
TC41_1307	PWY-6728	methylaspartate cycle
TC41_1307	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TC41_1307	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TC41_1328	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TC41_1364	PWY-7560	methylerythritol phosphate pathway II
TC41_1367	PWY-5386	methylglyoxal degradation I
TC41_1368	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
TC41_1377	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
TC41_1377	PWY-6167	flavin biosynthesis II (archaea)
TC41_1377	PWY-6168	flavin biosynthesis III (fungi)
TC41_1383	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TC41_1383	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TC41_1383	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
TC41_1383	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
TC41_1384	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
TC41_1386	PWY-2941	L-lysine biosynthesis II
TC41_1386	PWY-2942	L-lysine biosynthesis III
TC41_1386	PWY-5097	L-lysine biosynthesis VI
TC41_1386	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TC41_1386	PWY-6559	spermidine biosynthesis II
TC41_1386	PWY-6562	norspermidine biosynthesis
TC41_1386	PWY-7153	grixazone biosynthesis
TC41_1386	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TC41_1387	PWY-2941	L-lysine biosynthesis II
TC41_1387	PWY-2942	L-lysine biosynthesis III
TC41_1387	PWY-5097	L-lysine biosynthesis VI
TC41_1387	PWY-6559	spermidine biosynthesis II
TC41_1387	PWY-6562	norspermidine biosynthesis
TC41_1387	PWY-7153	grixazone biosynthesis
TC41_1388	PWY-2941	L-lysine biosynthesis II
TC41_1388	PWY-2942	L-lysine biosynthesis III
TC41_1388	PWY-5097	L-lysine biosynthesis VI
TC41_1393	PWY-5642	2,4-dinitrotoluene degradation
TC41_1393	PWY-6373	acrylate degradation
TC41_1410	PWY-5269	cardiolipin biosynthesis II
TC41_1410	PWY-5668	cardiolipin biosynthesis I
TC41_1417	PWY-7533	gliotoxin biosynthesis
TC41_1430	PWY-2781	<i>cis</i>-zeatin biosynthesis
TC41_1447	PWY-5913	TCA cycle VI (obligate autotrophs)
TC41_1447	PWY-6549	L-glutamine biosynthesis III
TC41_1447	PWY-6728	methylaspartate cycle
TC41_1447	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TC41_1447	PWY-7124	ethylene biosynthesis V (engineered)
TC41_1447	PWY-7254	TCA cycle VII (acetate-producers)
TC41_1447	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
TC41_1454	PWY-3821	galactose degradation III
TC41_1454	PWY-6317	galactose degradation I (Leloir pathway)
TC41_1454	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
TC41_1454	PWY-6527	stachyose degradation
TC41_1454	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
TC41_1454	PWY-7344	UDP-D-galactose biosynthesis
TC41_1465	PWY-381	nitrate reduction II (assimilatory)
TC41_1465	PWY-5675	nitrate reduction V (assimilatory)
TC41_1465	PWY-6549	L-glutamine biosynthesis III
TC41_1465	PWY-6963	ammonia assimilation cycle I
TC41_1465	PWY-6964	ammonia assimilation cycle II
TC41_1469	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
TC41_1476	PWY-2201	folate transformations I
TC41_1476	PWY-3841	folate transformations II
TC41_1488	PWY-1361	benzoyl-CoA degradation I (aerobic)
TC41_1488	PWY-5109	2-methylbutanoate biosynthesis
TC41_1488	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
TC41_1488	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
TC41_1488	PWY-5177	glutaryl-CoA degradation
TC41_1488	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TC41_1488	PWY-6435	4-hydroxybenzoate biosynthesis V
TC41_1488	PWY-6583	pyruvate fermentation to butanol I
TC41_1488	PWY-6863	pyruvate fermentation to hexanol
TC41_1488	PWY-6883	pyruvate fermentation to butanol II
TC41_1488	PWY-6944	androstenedione degradation
TC41_1488	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
TC41_1488	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
TC41_1488	PWY-7007	methyl ketone biosynthesis
TC41_1488	PWY-7046	4-coumarate degradation (anaerobic)
TC41_1488	PWY-7094	fatty acid salvage
TC41_1488	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TC41_1488	PWY-735	jasmonic acid biosynthesis
TC41_1488	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
TC41_1493	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TC41_1493	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TC41_1493	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TC41_1493	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TC41_1493	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TC41_1493	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TC41_1493	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
TC41_1493	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
TC41_1494	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TC41_1494	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TC41_1494	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TC41_1494	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TC41_1494	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TC41_1494	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TC41_1494	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
TC41_1494	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
TC41_1503	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
TC41_1503	PWY-6549	L-glutamine biosynthesis III
TC41_1503	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
TC41_1503	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
TC41_1504	PWY-5484	glycolysis II (from fructose 6-phosphate)
TC41_1515	PWY-5162	2-oxopentenoate degradation
TC41_1516	PWY-5162	2-oxopentenoate degradation
TC41_1516	PWY-5436	L-threonine degradation IV
TC41_1516	PWY-5480	pyruvate fermentation to ethanol I
TC41_1516	PWY-6587	pyruvate fermentation to ethanol III
TC41_1516	PWY-7085	triethylamine degradation
TC41_1516	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
TC41_1524	PWY-381	nitrate reduction II (assimilatory)
TC41_1524	PWY-5675	nitrate reduction V (assimilatory)
TC41_1524	PWY-6549	L-glutamine biosynthesis III
TC41_1524	PWY-6963	ammonia assimilation cycle I
TC41_1524	PWY-6964	ammonia assimilation cycle II
TC41_1531	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TC41_1531	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TC41_1532	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TC41_1532	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TC41_1539	PWY-5381	pyridine nucleotide cycling (plants)
TC41_1539	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
TC41_1539	PWY-6596	adenosine nucleotides degradation I
TC41_1539	PWY-6606	guanosine nucleotides degradation II
TC41_1539	PWY-6607	guanosine nucleotides degradation I
TC41_1539	PWY-6608	guanosine nucleotides degradation III
TC41_1539	PWY-7185	UTP and CTP dephosphorylation I
TC41_1542	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
TC41_1542	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
TC41_1549	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
TC41_1549	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
TC41_1552	PWY-2941	L-lysine biosynthesis II
TC41_1552	PWY-2942	L-lysine biosynthesis III
TC41_1552	PWY-5097	L-lysine biosynthesis VI
TC41_1562	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
TC41_1562	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
TC41_1562	PWY-6164	3-dehydroquinate biosynthesis I
TC41_1568	PWY-3461	L-tyrosine biosynthesis II
TC41_1568	PWY-3462	L-phenylalanine biosynthesis II
TC41_1568	PWY-6120	L-tyrosine biosynthesis III
TC41_1568	PWY-6627	salinosporamide A biosynthesis
TC41_1569	PWY-6164	3-dehydroquinate biosynthesis I
TC41_1570	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TC41_1587	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TC41_1587	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
TC41_1587	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TC41_1587	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
TC41_1587	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
TC41_1587	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TC41_1587	PWY-7205	CMP phosphorylation
TC41_1587	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TC41_1587	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TC41_1587	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TC41_1587	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TC41_1587	PWY-7224	purine deoxyribonucleosides salvage
TC41_1587	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
TC41_1587	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
TC41_1589	PWY-5839	menaquinol-7 biosynthesis
TC41_1589	PWY-5844	menaquinol-9 biosynthesis
TC41_1589	PWY-5849	menaquinol-6 biosynthesis
TC41_1589	PWY-5890	menaquinol-10 biosynthesis
TC41_1589	PWY-5891	menaquinol-11 biosynthesis
TC41_1589	PWY-5892	menaquinol-12 biosynthesis
TC41_1589	PWY-5895	menaquinol-13 biosynthesis
TC41_1590	PWY-5807	heptaprenyl diphosphate biosynthesis
TC41_1595	PWY-5667	CDP-diacylglycerol biosynthesis I
TC41_1595	PWY-5981	CDP-diacylglycerol biosynthesis III
TC41_1603	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TC41_1603	PWY-7205	CMP phosphorylation
TC41_1647	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TC41_1647	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TC41_1648	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
TC41_1655	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
TC41_1655	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
TC41_1656	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
TC41_1656	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
TC41_1656	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
TC41_1658	PWY-6823	molybdenum cofactor biosynthesis
TC41_1670	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
TC41_1670	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
TC41_1670	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
TC41_1677	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
TC41_1677	PWY-2201	folate transformations I
TC41_1677	PWY-3841	folate transformations II
TC41_1677	PWY-5030	L-histidine degradation III
TC41_1677	PWY-5497	purine nucleobases degradation II (anaerobic)
TC41_1677	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
TC41_1678	PWY-101	photosynthesis light reactions
TC41_1678	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
TC41_1697	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TC41_1697	PWY-6416	quinate degradation II
TC41_1697	PWY-6707	gallate biosynthesis
TC41_1705	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TC41_1710	PWY-4041	&gamma;-glutamyl cycle
TC41_1735	PWY-6825	phosphatidylcholine biosynthesis V
TC41_1835	PWY-1361	benzoyl-CoA degradation I (aerobic)
TC41_1835	PWY-5109	2-methylbutanoate biosynthesis
TC41_1835	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
TC41_1835	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
TC41_1835	PWY-5177	glutaryl-CoA degradation
TC41_1835	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TC41_1835	PWY-6435	4-hydroxybenzoate biosynthesis V
TC41_1835	PWY-6583	pyruvate fermentation to butanol I
TC41_1835	PWY-6863	pyruvate fermentation to hexanol
TC41_1835	PWY-6883	pyruvate fermentation to butanol II
TC41_1835	PWY-6944	androstenedione degradation
TC41_1835	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
TC41_1835	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
TC41_1835	PWY-7007	methyl ketone biosynthesis
TC41_1835	PWY-7046	4-coumarate degradation (anaerobic)
TC41_1835	PWY-7094	fatty acid salvage
TC41_1835	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TC41_1835	PWY-735	jasmonic acid biosynthesis
TC41_1835	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
TC41_1925	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TC41_1925	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TC41_1926	PWY-2161	folate polyglutamylation
TC41_1932	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TC41_1934	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TC41_1934	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
TC41_1935	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TC41_1935	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
TC41_1936	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TC41_1936	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
TC41_1938	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TC41_1945	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
TC41_1946	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TC41_1946	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TC41_1953	PWY-6936	seleno-amino acid biosynthesis
TC41_1959	PWY-3781	aerobic respiration I (cytochrome c)
TC41_1959	PWY-4302	aerobic respiration III (alternative oxidase pathway)
TC41_1959	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
TC41_1959	PWY-5690	TCA cycle II (plants and fungi)
TC41_1959	PWY-6728	methylaspartate cycle
TC41_1959	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TC41_1959	PWY-7254	TCA cycle VII (acetate-producers)
TC41_1959	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TC41_1960	PWY-3781	aerobic respiration I (cytochrome c)
TC41_1960	PWY-4302	aerobic respiration III (alternative oxidase pathway)
TC41_1960	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
TC41_1960	PWY-5690	TCA cycle II (plants and fungi)
TC41_1960	PWY-6728	methylaspartate cycle
TC41_1960	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TC41_1960	PWY-7254	TCA cycle VII (acetate-producers)
TC41_1960	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TC41_1964	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TC41_1980	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TC41_1980	PWY-5723	Rubisco shunt
TC41_1985	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TC41_1985	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TC41_1985	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TC41_1985	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TC41_1985	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TC41_1985	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TC41_1985	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
TC41_1985	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
TC41_1992	PWY-2941	L-lysine biosynthesis II
TC41_1992	PWY-5097	L-lysine biosynthesis VI
TC41_1995	PWY-3121	linamarin degradation
TC41_1995	PWY-5176	coumarin biosynthesis (via 2-coumarate)
TC41_1995	PWY-6002	lotaustralin degradation
TC41_1995	PWY-6788	cellulose degradation II (fungi)
TC41_1995	PWY-7089	taxiphyllin bioactivation
TC41_1995	PWY-7091	linustatin bioactivation
TC41_1995	PWY-7092	neolinustatin bioactivation
TC41_2008	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TC41_2008	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
TC41_2008	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TC41_2008	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TC41_2011	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TC41_2011	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
TC41_2011	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TC41_2011	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TC41_2016	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
TC41_2016	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
TC41_2017	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
TC41_2017	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
TC41_2018	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
TC41_2018	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
TC41_2018	PWY-5901	2,3-dihydroxybenzoate biosynthesis
TC41_2018	PWY-6406	salicylate biosynthesis I
TC41_2019	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
TC41_2019	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
TC41_2020	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
TC41_2020	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
TC41_2021	PWY-5839	menaquinol-7 biosynthesis
TC41_2021	PWY-5851	demethylmenaquinol-9 biosynthesis
TC41_2021	PWY-5852	demethylmenaquinol-8 biosynthesis I
TC41_2021	PWY-5853	demethylmenaquinol-6 biosynthesis I
TC41_2021	PWY-5890	menaquinol-10 biosynthesis
TC41_2021	PWY-5891	menaquinol-11 biosynthesis
TC41_2021	PWY-5892	menaquinol-12 biosynthesis
TC41_2021	PWY-5895	menaquinol-13 biosynthesis
TC41_2024	PWY-1881	formate oxidation to CO<sub>2</sub>
TC41_2024	PWY-5497	purine nucleobases degradation II (anaerobic)
TC41_2024	PWY-6696	oxalate degradation III
TC41_2030	PWY-5663	tetrahydrobiopterin biosynthesis I
TC41_2030	PWY-5664	tetrahydrobiopterin biosynthesis II
TC41_2030	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TC41_2030	PWY-6703	preQ<sub>0</sub> biosynthesis
TC41_2030	PWY-6983	tetrahydrobiopterin biosynthesis III
TC41_2030	PWY-7442	drosopterin and aurodrosopterin biosynthesis
TC41_2031	PWY-6899	base-degraded thiamin salvage
TC41_2031	PWY-7356	thiamin salvage IV (yeast)
TC41_2032	PWY-6910	hydroxymethylpyrimidine salvage
TC41_2032	PWY-7356	thiamin salvage IV (yeast)
TC41_2032	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
TC41_2033	PWY-6897	thiamin salvage II
TC41_2033	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
TC41_2033	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
TC41_2034	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
TC41_2034	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
TC41_2034	PWY-6897	thiamin salvage II
TC41_2034	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
TC41_2034	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
TC41_2034	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
TC41_2034	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
TC41_2053	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
TC41_2053	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
TC41_2053	PWY-6268	adenosylcobalamin salvage from cobalamin
TC41_2053	PWY-6269	adenosylcobalamin salvage from cobinamide II
TC41_2055	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
TC41_2055	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
TC41_2055	PWY-6269	adenosylcobalamin salvage from cobinamide II
TC41_2058	PWY-6703	preQ<sub>0</sub> biosynthesis
TC41_2059	PWY-7425	2-chloroacrylate degradation I
TC41_2067	PWY-5155	&beta;-alanine biosynthesis III
TC41_2085	PWY-5663	tetrahydrobiopterin biosynthesis I
TC41_2085	PWY-5664	tetrahydrobiopterin biosynthesis II
TC41_2085	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TC41_2085	PWY-6703	preQ<sub>0</sub> biosynthesis
TC41_2085	PWY-6983	tetrahydrobiopterin biosynthesis III
TC41_2085	PWY-7442	drosopterin and aurodrosopterin biosynthesis
TC41_2094	PWY-7039	phosphatidate metabolism, as a signaling molecule
TC41_2103	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
TC41_2131	PWY-5381	pyridine nucleotide cycling (plants)
TC41_2131	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
TC41_2132	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TC41_2144	PWY-6823	molybdenum cofactor biosynthesis
TC41_2144	PWY-6891	thiazole biosynthesis II (Bacillus)
TC41_2144	PWY-6892	thiazole biosynthesis I (E. coli)
TC41_2144	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
TC41_2159	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TC41_2172	PWY-4381	fatty acid biosynthesis initiation I
TC41_2172	PWY-5743	3-hydroxypropanoate cycle
TC41_2172	PWY-5744	glyoxylate assimilation
TC41_2172	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TC41_2172	PWY-6679	jadomycin biosynthesis
TC41_2172	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TC41_2177	PWY-6672	<i>cis</i>-genanyl-CoA degradation
TC41_2177	PWY-7118	chitin degradation to ethanol
TC41_2182	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
TC41_2182	PWY-7248	pectin degradation III
TC41_2184	PWY-6700	queuosine biosynthesis
TC41_2192	PWY-6823	molybdenum cofactor biosynthesis
TC41_2193	PWY-3801	sucrose degradation II (sucrose synthase)
TC41_2193	PWY-6527	stachyose degradation
TC41_2193	PWY-6981	chitin biosynthesis
TC41_2193	PWY-7238	sucrose biosynthesis II
TC41_2193	PWY-7343	UDP-glucose biosynthesis
TC41_2207	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
TC41_2207	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
TC41_2209	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
TC41_2209	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
TC41_2216	PWY-6605	adenine and adenosine salvage II
TC41_2216	PWY-6610	adenine and adenosine salvage IV
TC41_2227	PWY-6700	queuosine biosynthesis
TC41_2228	PWY-6700	queuosine biosynthesis
TC41_2254	PWY-6123	inosine-5'-phosphate biosynthesis I
TC41_2254	PWY-7234	inosine-5'-phosphate biosynthesis III
TC41_2256	PWY-1042	glycolysis IV (plant cytosol)
TC41_2256	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TC41_2256	PWY-5484	glycolysis II (from fructose 6-phosphate)
TC41_2256	PWY-7385	1,3-propanediol biosynthesis (engineered)
TC41_2257	PWY-1622	formaldehyde assimilation I (serine pathway)
TC41_2257	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
TC41_2257	PWY-5913	TCA cycle VI (obligate autotrophs)
TC41_2257	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TC41_2257	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
TC41_2257	PWY-6549	L-glutamine biosynthesis III
TC41_2257	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
TC41_2257	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
TC41_2257	PWY-7124	ethylene biosynthesis V (engineered)
TC41_2264	PWY-7254	TCA cycle VII (acetate-producers)
TC41_2265	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
TC41_2266	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
TC41_2271	PWY-3861	mannitol degradation II
TC41_2271	PWY-3881	mannitol biosynthesis
TC41_2271	PWY-5659	GDP-mannose biosynthesis
TC41_2271	PWY-7456	mannan degradation
TC41_2271	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
TC41_2304	PWY-4261	glycerol degradation I
TC41_2334	PWY-7158	L-phenylalanine degradation V
TC41_2337	PWY-6834	spermidine biosynthesis III
TC41_2349	PWY-2161	folate polyglutamylation
TC41_2352	PWY-7396	butanol and isobutanol biosynthesis (engineered)
TC41_2353	PWY-5101	L-isoleucine biosynthesis II
TC41_2353	PWY-5103	L-isoleucine biosynthesis III
TC41_2353	PWY-5104	L-isoleucine biosynthesis IV
TC41_2353	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TC41_2354	PWY-5101	L-isoleucine biosynthesis II
TC41_2354	PWY-5103	L-isoleucine biosynthesis III
TC41_2354	PWY-5104	L-isoleucine biosynthesis IV
TC41_2354	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
TC41_2354	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
TC41_2354	PWY-6389	(<i>S</i>)-acetoin biosynthesis
TC41_2354	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TC41_2355	PWY-5101	L-isoleucine biosynthesis II
TC41_2355	PWY-5103	L-isoleucine biosynthesis III
TC41_2355	PWY-5104	L-isoleucine biosynthesis IV
TC41_2355	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
TC41_2355	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
TC41_2355	PWY-6389	(<i>S</i>)-acetoin biosynthesis
TC41_2355	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TC41_2356	PWY-5101	L-isoleucine biosynthesis II
TC41_2356	PWY-5103	L-isoleucine biosynthesis III
TC41_2356	PWY-5104	L-isoleucine biosynthesis IV
TC41_2356	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TC41_2358	PWY-5057	L-valine degradation II
TC41_2358	PWY-5076	L-leucine degradation III
TC41_2358	PWY-5078	L-isoleucine degradation II
TC41_2358	PWY-5101	L-isoleucine biosynthesis II
TC41_2358	PWY-5103	L-isoleucine biosynthesis III
TC41_2358	PWY-5104	L-isoleucine biosynthesis IV
TC41_2358	PWY-5108	L-isoleucine biosynthesis V
TC41_2379	PWY-4041	&gamma;-glutamyl cycle
TC41_2402	PWY-6825	phosphatidylcholine biosynthesis V
TC41_2542	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
TC41_2542	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
TC41_2546	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TC41_2560	PWY-1042	glycolysis IV (plant cytosol)
TC41_2560	PWY-5484	glycolysis II (from fructose 6-phosphate)
TC41_2560	PWY-6901	superpathway of glucose and xylose degradation
TC41_2560	PWY-7003	glycerol degradation to butanol
TC41_2562	PWY-3961	phosphopantothenate biosynthesis II
TC41_2570	PWY-7242	D-fructuronate degradation
TC41_2571	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TC41_2571	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
TC41_2571	PWY-7242	D-fructuronate degradation
TC41_2571	PWY-7310	D-glucosaminate degradation
TC41_2605	PWY-6317	galactose degradation I (Leloir pathway)
TC41_2605	PWY-6527	stachyose degradation
TC41_2606	PWY-3821	galactose degradation III
TC41_2606	PWY-6317	galactose degradation I (Leloir pathway)
TC41_2606	PWY-6527	stachyose degradation
TC41_2609	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
TC41_2630	PWY-3461	L-tyrosine biosynthesis II
TC41_2630	PWY-3462	L-phenylalanine biosynthesis II
TC41_2630	PWY-6120	L-tyrosine biosynthesis III
TC41_2630	PWY-6627	salinosporamide A biosynthesis
TC41_2631	PWY-1622	formaldehyde assimilation I (serine pathway)
TC41_2631	PWY-5392	reductive TCA cycle II
TC41_2631	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
TC41_2631	PWY-5690	TCA cycle II (plants and fungi)
TC41_2631	PWY-5913	TCA cycle VI (obligate autotrophs)
TC41_2631	PWY-6728	methylaspartate cycle
TC41_2631	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TC41_2631	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
TC41_2631	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TC41_2632	PWY-5913	TCA cycle VI (obligate autotrophs)
TC41_2632	PWY-6549	L-glutamine biosynthesis III
TC41_2632	PWY-6728	methylaspartate cycle
TC41_2632	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TC41_2632	PWY-7124	ethylene biosynthesis V (engineered)
TC41_2632	PWY-7254	TCA cycle VII (acetate-producers)
TC41_2632	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
TC41_2636	PWY-1042	glycolysis IV (plant cytosol)
TC41_2636	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TC41_2636	PWY-5484	glycolysis II (from fructose 6-phosphate)
TC41_2636	PWY-5723	Rubisco shunt
TC41_2636	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TC41_2636	PWY-6886	1-butanol autotrophic biosynthesis
TC41_2636	PWY-6901	superpathway of glucose and xylose degradation
TC41_2636	PWY-7003	glycerol degradation to butanol
TC41_2636	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
TC41_2636	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TC41_2637	PWY-4381	fatty acid biosynthesis initiation I
TC41_2637	PWY-5743	3-hydroxypropanoate cycle
TC41_2637	PWY-5744	glyoxylate assimilation
TC41_2637	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TC41_2637	PWY-6679	jadomycin biosynthesis
TC41_2637	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TC41_2638	PWY-4381	fatty acid biosynthesis initiation I
TC41_2638	PWY-5743	3-hydroxypropanoate cycle
TC41_2638	PWY-5744	glyoxylate assimilation
TC41_2638	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TC41_2638	PWY-6679	jadomycin biosynthesis
TC41_2638	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TC41_2641	PWY-1281	sulfoacetaldehyde degradation I
TC41_2641	PWY-5482	pyruvate fermentation to acetate II
TC41_2641	PWY-5485	pyruvate fermentation to acetate IV
TC41_2641	PWY-5497	purine nucleobases degradation II (anaerobic)
TC41_2641	PWY-6637	sulfolactate degradation II
TC41_2647	PWY-6936	seleno-amino acid biosynthesis
TC41_2659	PWY-6703	preQ<sub>0</sub> biosynthesis
TC41_2670	PWY-6523	nitrite-dependent anaerobic methane oxidation
TC41_2670	PWY-6748	nitrate reduction VII (denitrification)
TC41_2670	PWY-7084	nitrifier denitrification
TC41_2691	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
TC41_2691	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
TC41_2691	PWY-6164	3-dehydroquinate biosynthesis I
TC41_2707	PWY-2201	folate transformations I
TC41_2707	PWY-5497	purine nucleobases degradation II (anaerobic)
TC41_2709	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TC41_2710	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TC41_2710	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
TC41_2710	PWY-5194	siroheme biosynthesis
TC41_2710	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TC41_2711	PWY-6683	sulfate reduction III (assimilatory)
TC41_2713	PWY-5194	siroheme biosynthesis
TC41_2713	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TC41_2733	PWY-6098	diploterol and cycloartenol biosynthesis
TC41_2733	PWY-7072	hopanoid biosynthesis (bacteria)
TC41_2734	PWY-5152	leucodelphinidin biosynthesis
TC41_2737	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
TC41_2737	PWY-6174	mevalonate pathway II (archaea)
TC41_2737	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
TC41_2737	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
TC41_2737	PWY-7102	bisabolene biosynthesis
TC41_2737	PWY-7391	isoprene biosynthesis II (engineered)
TC41_2737	PWY-7524	mevalonate pathway III (archaea)
TC41_2737	PWY-7560	methylerythritol phosphate pathway II
TC41_2737	PWY-922	mevalonate pathway I
TC41_2738	PWY-6891	thiazole biosynthesis II (Bacillus)
TC41_2738	PWY-6892	thiazole biosynthesis I (E. coli)
TC41_2738	PWY-7560	methylerythritol phosphate pathway II
TC41_2759	PWY-381	nitrate reduction II (assimilatory)
TC41_2759	PWY-5675	nitrate reduction V (assimilatory)
TC41_2759	PWY-6549	L-glutamine biosynthesis III
TC41_2759	PWY-6963	ammonia assimilation cycle I
TC41_2759	PWY-6964	ammonia assimilation cycle II
TC41_2767	PWY-6788	cellulose degradation II (fungi)
TC41_2768	PWY-5316	nicotine biosynthesis
TC41_2768	PWY-7342	superpathway of nicotine biosynthesis
TC41_2769	PWY-5316	nicotine biosynthesis
TC41_2769	PWY-7342	superpathway of nicotine biosynthesis
TC41_2770	PWY-5381	pyridine nucleotide cycling (plants)
TC41_2773	PWY-6891	thiazole biosynthesis II (Bacillus)
TC41_2773	PWY-6892	thiazole biosynthesis I (E. coli)
TC41_2776	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
TC41_2776	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
TC41_2776	PWY-6897	thiamin salvage II
TC41_2776	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
TC41_2776	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
TC41_2776	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
TC41_2776	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
TC41_2821	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
TC41_2821	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
TC41_2823	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TC41_2823	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TC41_2829	PWY-6728	methylaspartate cycle
TC41_2829	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TC41_2829	PWY-7118	chitin degradation to ethanol
TC41_2829	PWY-7294	xylose degradation IV
TC41_2829	PWY-7295	L-arabinose degradation IV
TC41_2831	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TC41_2831	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TC41_2833	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TC41_2833	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TC41_2842	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
TC41_2842	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
TC41_2843	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
TC41_2867	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
TC41_2867	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
TC41_2872	PWY-6749	CMP-legionaminate biosynthesis I
TC41_2875	PWY-3341	L-proline biosynthesis III
TC41_2875	PWY-4981	L-proline biosynthesis II (from arginine)
TC41_2875	PWY-6344	L-ornithine degradation II (Stickland reaction)
TC41_2902	PWY-6654	phosphopantothenate biosynthesis III
TC41_2944	PWY-5350	thiosulfate disproportionation III (rhodanese)
TC41_2960	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
TC41_2997	PWY-6749	CMP-legionaminate biosynthesis I
TC41_2998	PWY-6749	CMP-legionaminate biosynthesis I
TC41_3019	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TC41_3063	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TC41_3064	PWY-7560	methylerythritol phosphate pathway II
TC41_3065	PWY-7560	methylerythritol phosphate pathway II
TC41_3067	PWY-5669	phosphatidylethanolamine biosynthesis I
TC41_3079	PWY-5971	palmitate biosynthesis II (bacteria and plants)
TC41_3079	PWY-5973	<i>cis</i>-vaccenate biosynthesis
TC41_3079	PWY-5989	stearate biosynthesis II (bacteria and plants)
TC41_3079	PWY-5994	palmitate biosynthesis I (animals and fungi)
TC41_3079	PWY-6113	superpathway of mycolate biosynthesis
TC41_3079	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
TC41_3079	PWY-6519	8-amino-7-oxononanoate biosynthesis I
TC41_3079	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TC41_3079	PWYG-321	mycolate biosynthesis
TC41_3080	PWY-5269	cardiolipin biosynthesis II
TC41_3080	PWY-5668	cardiolipin biosynthesis I
TC41_3087	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TC41_3087	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TC41_3092	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TC41_3094	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TC41_3101	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
TC41_3102	PWY-7183	pyrimidine nucleobases salvage I
TC41_3103	PWY-1622	formaldehyde assimilation I (serine pathway)
TC41_3103	PWY-181	photorespiration
TC41_3103	PWY-2161	folate polyglutamylation
TC41_3103	PWY-2201	folate transformations I
TC41_3103	PWY-3661	glycine betaine degradation I
TC41_3103	PWY-3661-1	glycine betaine degradation II (mammalian)
TC41_3103	PWY-3841	folate transformations II
TC41_3103	PWY-5497	purine nucleobases degradation II (anaerobic)
TC41_3120	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TC41_3122	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TC41_3122	PWY-5723	Rubisco shunt
TC41_3124	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
TC41_3124	PWY-7177	UTP and CTP dephosphorylation II
TC41_3124	PWY-7185	UTP and CTP dephosphorylation I
TC41_3133	PWY-40	putrescine biosynthesis I
TC41_3133	PWY-6305	putrescine biosynthesis IV
TC41_3144	PWY-6823	molybdenum cofactor biosynthesis
TC41_3154	PWY-4261	glycerol degradation I
TC41_3157	PWY-5344	L-homocysteine biosynthesis
TC41_3157	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
TC41_3159	PWY-5344	L-homocysteine biosynthesis
TC41_3159	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
TC41_3163	PWY-5663	tetrahydrobiopterin biosynthesis I
TC41_3163	PWY-5664	tetrahydrobiopterin biosynthesis II
TC41_3163	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TC41_3163	PWY-6703	preQ<sub>0</sub> biosynthesis
TC41_3163	PWY-6983	tetrahydrobiopterin biosynthesis III
TC41_3163	PWY-7442	drosopterin and aurodrosopterin biosynthesis
TC41_3168	PWY-5943	&beta;-carotene biosynthesis
TC41_3168	PWY-5947	lutein biosynthesis
TC41_3182	PWY-4202	arsenate detoxification I (glutaredoxin)
TC41_3182	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
TC41_3182	PWY-6608	guanosine nucleotides degradation III
TC41_3182	PWY-6609	adenine and adenosine salvage III
TC41_3182	PWY-6611	adenine and adenosine salvage V
TC41_3182	PWY-6620	guanine and guanosine salvage
TC41_3182	PWY-6627	salinosporamide A biosynthesis
TC41_3182	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
TC41_3182	PWY-7179	purine deoxyribonucleosides degradation I
TC41_3182	PWY-7179-1	purine deoxyribonucleosides degradation
TC41_3183	PWY-2941	L-lysine biosynthesis II
TC41_3184	PWY-2941	L-lysine biosynthesis II
TC41_3190	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
TC41_3190	PWY-2201	folate transformations I
TC41_3190	PWY-3841	folate transformations II
TC41_3190	PWY-5030	L-histidine degradation III
TC41_3190	PWY-5497	purine nucleobases degradation II (anaerobic)
TC41_3190	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
TC41_3197	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
TC41_3206	PWY-6654	phosphopantothenate biosynthesis III
TC41_3246	PWY-6807	xyloglucan degradation II (exoglucanase)
TC41_3264	PWY-4261	glycerol degradation I
