MC28_0005	PWY-6899	base-degraded thiamin salvage
MC28_0005	PWY-7356	thiamin salvage IV (yeast)
MC28_0009	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
MC28_0009	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
MC28_0009	PWY-6897	thiamin salvage II
MC28_0009	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
MC28_0009	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
MC28_0009	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
MC28_0009	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
MC28_0012	PWY-6891	thiazole biosynthesis II (Bacillus)
MC28_0012	PWY-6892	thiazole biosynthesis I (E. coli)
MC28_0013	PWY-6891	thiazole biosynthesis II (Bacillus)
MC28_0013	PWY-6892	thiazole biosynthesis I (E. coli)
MC28_0014	PWY-6910	hydroxymethylpyrimidine salvage
MC28_0014	PWY-7356	thiamin salvage IV (yeast)
MC28_0014	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
MC28_0044	PWY-6483	ceramide degradation
MC28_0044	PWY-7119	sphingolipid recycling and degradation (yeast)
MC28_0066	PWY-7310	D-glucosaminate degradation
MC28_0068	PWY-7310	D-glucosaminate degradation
MC28_0069	PWY-7310	D-glucosaminate degradation
MC28_0099	PWY-7310	D-glucosaminate degradation
MC28_0126	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_0126	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_0140	PWY-5101	L-isoleucine biosynthesis II
MC28_0140	PWY-5103	L-isoleucine biosynthesis III
MC28_0140	PWY-5104	L-isoleucine biosynthesis IV
MC28_0140	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
MC28_0140	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
MC28_0140	PWY-6389	(<i>S</i>)-acetoin biosynthesis
MC28_0140	PWY-7111	pyruvate fermentation to isobutanol (engineered)
MC28_0141	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
MC28_0202	PWY-7310	D-glucosaminate degradation
MC28_0205	PWY-5669	phosphatidylethanolamine biosynthesis I
MC28_0268	PWY-4261	glycerol degradation I
MC28_0269	PWY-4261	glycerol degradation I
MC28_0269	PWY-6118	glycerol-3-phosphate shuttle
MC28_0269	PWY-6952	glycerophosphodiester degradation
MC28_0302	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MC28_0302	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MC28_0304	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MC28_0304	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MC28_0324	PWY-6984	lipoate salvage II
MC28_0324	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
MC28_0324	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
MC28_0347	PWY-6728	methylaspartate cycle
MC28_0347	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MC28_0347	PWY-7118	chitin degradation to ethanol
MC28_0347	PWY-7294	xylose degradation IV
MC28_0347	PWY-7295	L-arabinose degradation IV
MC28_0348	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MC28_0369	PWY-3341	L-proline biosynthesis III
MC28_0369	PWY-4981	L-proline biosynthesis II (from arginine)
MC28_0369	PWY-6344	L-ornithine degradation II (Stickland reaction)
MC28_0369	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
MC28_0374	PWY-5506	methanol oxidation to formaldehyde IV
MC28_0395	PWY-4381	fatty acid biosynthesis initiation I
MC28_0424	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
MC28_0424	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
MC28_0424	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
MC28_0438	PWY-3221	dTDP-L-rhamnose biosynthesis II
MC28_0438	PWY-6808	dTDP-D-forosamine biosynthesis
MC28_0438	PWY-6942	dTDP-D-desosamine biosynthesis
MC28_0438	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
MC28_0438	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
MC28_0438	PWY-6974	dTDP-L-olivose biosynthesis
MC28_0438	PWY-6976	dTDP-L-mycarose biosynthesis
MC28_0438	PWY-7104	dTDP-L-megosamine biosynthesis
MC28_0438	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
MC28_0438	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
MC28_0438	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
MC28_0438	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
MC28_0438	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
MC28_0438	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
MC28_0438	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
MC28_0438	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
MC28_0440	PWY-3221	dTDP-L-rhamnose biosynthesis II
MC28_0440	PWY-6808	dTDP-D-forosamine biosynthesis
MC28_0440	PWY-6942	dTDP-D-desosamine biosynthesis
MC28_0440	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
MC28_0440	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
MC28_0440	PWY-6974	dTDP-L-olivose biosynthesis
MC28_0440	PWY-6976	dTDP-L-mycarose biosynthesis
MC28_0440	PWY-7104	dTDP-L-megosamine biosynthesis
MC28_0440	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
MC28_0440	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
MC28_0440	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
MC28_0440	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
MC28_0440	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
MC28_0440	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
MC28_0440	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
MC28_0440	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
MC28_0442	PWY-5971	palmitate biosynthesis II (bacteria and plants)
MC28_0442	PWY-5973	<i>cis</i>-vaccenate biosynthesis
MC28_0442	PWY-5989	stearate biosynthesis II (bacteria and plants)
MC28_0442	PWY-6113	superpathway of mycolate biosynthesis
MC28_0442	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
MC28_0442	PWY-6519	8-amino-7-oxononanoate biosynthesis I
MC28_0442	PWY-7096	triclosan resistance
MC28_0442	PWYG-321	mycolate biosynthesis
MC28_0458	PWY-5958	acridone alkaloid biosynthesis
MC28_0458	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
MC28_0458	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
MC28_0459	PWY-5958	acridone alkaloid biosynthesis
MC28_0459	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
MC28_0459	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
MC28_0483	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
MC28_0484	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
MC28_0505	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
MC28_0505	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
MC28_0526	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_0526	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_0545	PWY-5676	acetyl-CoA fermentation to butanoate II
MC28_0545	PWY-5741	ethylmalonyl-CoA pathway
MC28_0545	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
MC28_0555	PWY-6832	2-aminoethylphosphonate degradation II
MC28_0561	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
MC28_0571	PWY-6703	preQ<sub>0</sub> biosynthesis
MC28_0573	PWY-6703	preQ<sub>0</sub> biosynthesis
MC28_0574	PWY-6700	queuosine biosynthesis
MC28_0582	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
MC28_0582	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
MC28_0582	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
MC28_0582	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
MC28_0582	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MC28_0582	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MC28_0582	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
MC28_0582	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
MC28_0583	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
MC28_0583	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
MC28_0583	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
MC28_0583	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
MC28_0583	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MC28_0583	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MC28_0583	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
MC28_0583	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
MC28_0584	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
MC28_0584	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
MC28_0584	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
MC28_0584	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
MC28_0584	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MC28_0584	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MC28_0584	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
MC28_0584	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
MC28_0591	PWY-2	putrescine degradation IV
MC28_0591	PWY-6440	spermine and spermidine degradation II
MC28_0604	PWY-723	alkylnitronates degradation
MC28_0633	PWY-5057	L-valine degradation II
MC28_0633	PWY-5076	L-leucine degradation III
MC28_0633	PWY-5078	L-isoleucine degradation II
MC28_0633	PWY-5101	L-isoleucine biosynthesis II
MC28_0633	PWY-5103	L-isoleucine biosynthesis III
MC28_0633	PWY-5104	L-isoleucine biosynthesis IV
MC28_0633	PWY-5108	L-isoleucine biosynthesis V
MC28_0634	PWY-5101	L-isoleucine biosynthesis II
MC28_0634	PWY-5103	L-isoleucine biosynthesis III
MC28_0634	PWY-5104	L-isoleucine biosynthesis IV
MC28_0634	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
MC28_0634	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
MC28_0634	PWY-6389	(<i>S</i>)-acetoin biosynthesis
MC28_0634	PWY-7111	pyruvate fermentation to isobutanol (engineered)
MC28_0635	PWY-5101	L-isoleucine biosynthesis II
MC28_0635	PWY-5103	L-isoleucine biosynthesis III
MC28_0635	PWY-5104	L-isoleucine biosynthesis IV
MC28_0635	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
MC28_0635	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
MC28_0635	PWY-6389	(<i>S</i>)-acetoin biosynthesis
MC28_0635	PWY-7111	pyruvate fermentation to isobutanol (engineered)
MC28_0636	PWY-5101	L-isoleucine biosynthesis II
MC28_0636	PWY-5103	L-isoleucine biosynthesis III
MC28_0636	PWY-5104	L-isoleucine biosynthesis IV
MC28_0636	PWY-7111	pyruvate fermentation to isobutanol (engineered)
MC28_0637	PWY-6871	3-methylbutanol biosynthesis
MC28_0638	PWY-7396	butanol and isobutanol biosynthesis (engineered)
MC28_0653	PWY-5669	phosphatidylethanolamine biosynthesis I
MC28_0656	PWY-2941	L-lysine biosynthesis II
MC28_0656	PWY-2942	L-lysine biosynthesis III
MC28_0656	PWY-5097	L-lysine biosynthesis VI
MC28_0659	PWY-5278	sulfite oxidation III
MC28_0659	PWY-5340	sulfate activation for sulfonation
MC28_0659	PWY-6683	sulfate reduction III (assimilatory)
MC28_0659	PWY-6932	selenate reduction
MC28_0660	PWY-5340	sulfate activation for sulfonation
MC28_0661	PWY-6683	sulfate reduction III (assimilatory)
MC28_0663	PWY-5194	siroheme biosynthesis
MC28_0663	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
MC28_0664	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
MC28_0665	PWY-5194	siroheme biosynthesis
MC28_0665	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
MC28_0698	PWY-4202	arsenate detoxification I (glutaredoxin)
MC28_0698	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
MC28_0698	PWY-6608	guanosine nucleotides degradation III
MC28_0698	PWY-6609	adenine and adenosine salvage III
MC28_0698	PWY-6611	adenine and adenosine salvage V
MC28_0698	PWY-6620	guanine and guanosine salvage
MC28_0698	PWY-6627	salinosporamide A biosynthesis
MC28_0698	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
MC28_0698	PWY-7179	purine deoxyribonucleosides degradation I
MC28_0698	PWY-7179-1	purine deoxyribonucleosides degradation
MC28_0703	PWY-6854	ethylene biosynthesis III (microbes)
MC28_0704	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
MC28_0704	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
MC28_0713	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
MC28_0713	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
MC28_0713	PWY-6268	adenosylcobalamin salvage from cobalamin
MC28_0713	PWY-6269	adenosylcobalamin salvage from cobinamide II
MC28_0731	PWY-7205	CMP phosphorylation
MC28_0733	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
MC28_0733	PWY-6174	mevalonate pathway II (archaea)
MC28_0733	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
MC28_0733	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
MC28_0733	PWY-7102	bisabolene biosynthesis
MC28_0733	PWY-7391	isoprene biosynthesis II (engineered)
MC28_0733	PWY-7524	mevalonate pathway III (archaea)
MC28_0733	PWY-7560	methylerythritol phosphate pathway II
MC28_0733	PWY-922	mevalonate pathway I
MC28_0739	PWY-5667	CDP-diacylglycerol biosynthesis I
MC28_0739	PWY-5981	CDP-diacylglycerol biosynthesis III
MC28_0745	PWY-5663	tetrahydrobiopterin biosynthesis I
MC28_0745	PWY-5664	tetrahydrobiopterin biosynthesis II
MC28_0745	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
MC28_0745	PWY-6703	preQ<sub>0</sub> biosynthesis
MC28_0745	PWY-6983	tetrahydrobiopterin biosynthesis III
MC28_0745	PWY-7442	drosopterin and aurodrosopterin biosynthesis
MC28_0746	PWY-5807	heptaprenyl diphosphate biosynthesis
MC28_0747	PWY-5839	menaquinol-7 biosynthesis
MC28_0747	PWY-5844	menaquinol-9 biosynthesis
MC28_0747	PWY-5849	menaquinol-6 biosynthesis
MC28_0747	PWY-5890	menaquinol-10 biosynthesis
MC28_0747	PWY-5891	menaquinol-11 biosynthesis
MC28_0747	PWY-5892	menaquinol-12 biosynthesis
MC28_0747	PWY-5895	menaquinol-13 biosynthesis
MC28_0748	PWY-5807	heptaprenyl diphosphate biosynthesis
MC28_0749	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
MC28_0749	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
MC28_0749	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
MC28_0749	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
MC28_0749	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
MC28_0749	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
MC28_0749	PWY-7205	CMP phosphorylation
MC28_0749	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
MC28_0749	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MC28_0749	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
MC28_0749	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MC28_0749	PWY-7224	purine deoxyribonucleosides salvage
MC28_0749	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
MC28_0749	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
MC28_0750	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
MC28_0751	PWY-6164	3-dehydroquinate biosynthesis I
MC28_0766	PWY-2941	L-lysine biosynthesis II
MC28_0766	PWY-2942	L-lysine biosynthesis III
MC28_0766	PWY-5097	L-lysine biosynthesis VI
MC28_0771	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
MC28_0771	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
MC28_0773	PWY-6654	phosphopantothenate biosynthesis III
MC28_0775	PWY-5155	&beta;-alanine biosynthesis III
MC28_0895	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MC28_0963	PWY-5392	reductive TCA cycle II
MC28_0963	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
MC28_0963	PWY-5690	TCA cycle II (plants and fungi)
MC28_0963	PWY-5913	TCA cycle VI (obligate autotrophs)
MC28_0963	PWY-6728	methylaspartate cycle
MC28_0963	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MC28_0963	PWY-7254	TCA cycle VII (acetate-producers)
MC28_0963	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
MC28_0990	PWY-5392	reductive TCA cycle II
MC28_0990	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
MC28_0990	PWY-5690	TCA cycle II (plants and fungi)
MC28_0990	PWY-5913	TCA cycle VI (obligate autotrophs)
MC28_0990	PWY-6728	methylaspartate cycle
MC28_0990	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MC28_0990	PWY-7254	TCA cycle VII (acetate-producers)
MC28_0990	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
MC28_1001	PWY-2941	L-lysine biosynthesis II
MC28_1001	PWY-2942	L-lysine biosynthesis III
MC28_1001	PWY-5097	L-lysine biosynthesis VI
MC28_1001	PWY-6559	spermidine biosynthesis II
MC28_1001	PWY-6562	norspermidine biosynthesis
MC28_1001	PWY-7153	grixazone biosynthesis
MC28_1014	PWY-4381	fatty acid biosynthesis initiation I
MC28_1018	PWY-6936	seleno-amino acid biosynthesis
MC28_1031	PWY-5057	L-valine degradation II
MC28_1031	PWY-5076	L-leucine degradation III
MC28_1031	PWY-5078	L-isoleucine degradation II
MC28_1031	PWY-5101	L-isoleucine biosynthesis II
MC28_1031	PWY-5103	L-isoleucine biosynthesis III
MC28_1031	PWY-5104	L-isoleucine biosynthesis IV
MC28_1031	PWY-5108	L-isoleucine biosynthesis V
MC28_1032	PWY-5101	L-isoleucine biosynthesis II
MC28_1032	PWY-5103	L-isoleucine biosynthesis III
MC28_1032	PWY-5104	L-isoleucine biosynthesis IV
MC28_1032	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
MC28_1032	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
MC28_1032	PWY-6389	(<i>S</i>)-acetoin biosynthesis
MC28_1032	PWY-7111	pyruvate fermentation to isobutanol (engineered)
MC28_1034	PWY-5101	L-isoleucine biosynthesis II
MC28_1034	PWY-5103	L-isoleucine biosynthesis III
MC28_1034	PWY-5104	L-isoleucine biosynthesis IV
MC28_1034	PWY-7111	pyruvate fermentation to isobutanol (engineered)
MC28_1035	PWY-5101	L-isoleucine biosynthesis II
MC28_1035	PWY-5103	L-isoleucine biosynthesis III
MC28_1035	PWY-5104	L-isoleucine biosynthesis IV
MC28_1035	PWY-7111	pyruvate fermentation to isobutanol (engineered)
MC28_1043	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
MC28_1043	PWY-6153	autoinducer AI-2 biosynthesis I
MC28_1043	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
MC28_1057	PWY-6654	phosphopantothenate biosynthesis III
MC28_1065	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
MC28_1067	PWY-7181	pyrimidine deoxyribonucleosides degradation
MC28_1068	PWY-6556	pyrimidine ribonucleosides salvage II
MC28_1068	PWY-7181	pyrimidine deoxyribonucleosides degradation
MC28_1068	PWY-7193	pyrimidine ribonucleosides salvage I
MC28_1068	PWY-7199	pyrimidine deoxyribonucleosides salvage
MC28_1129	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
MC28_1133	PWY-5481	pyruvate fermentation to lactate
MC28_1133	PWY-6901	superpathway of glucose and xylose degradation
MC28_1170	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
MC28_1170	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
MC28_1173	PWY-702	L-methionine biosynthesis II
MC28_1244	PWY-0	putrescine degradation III
MC28_1244	PWY-6117	spermine and spermidine degradation I
MC28_1282	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
MC28_1291	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
MC28_1323	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
MC28_1323	PWY-2161	folate polyglutamylation
MC28_1323	PWY-2201	folate transformations I
MC28_1323	PWY-3841	folate transformations II
MC28_1345	PWY-6823	molybdenum cofactor biosynthesis
MC28_1347	PWY-6823	molybdenum cofactor biosynthesis
MC28_1348	PWY-6823	molybdenum cofactor biosynthesis
MC28_1352	PWY-5194	siroheme biosynthesis
MC28_1352	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
MC28_1353	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
MC28_1354	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MC28_1354	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
MC28_1354	PWY-5194	siroheme biosynthesis
MC28_1354	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
MC28_1356	PWY-6683	sulfate reduction III (assimilatory)
MC28_1369	PWY-7153	grixazone biosynthesis
MC28_1401	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_1401	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_1411	PWY-3841	folate transformations II
MC28_1411	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
MC28_1411	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
MC28_1411	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
MC28_1411	PWY-7199	pyrimidine deoxyribonucleosides salvage
MC28_1411	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
MC28_1412	PWY-3841	folate transformations II
MC28_1412	PWY-6614	tetrahydrofolate biosynthesis
MC28_1416	PWY-5667	CDP-diacylglycerol biosynthesis I
MC28_1416	PWY-5981	CDP-diacylglycerol biosynthesis III
MC28_1416	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
MC28_1416	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
MC28_1559	PWY-5747	2-methylcitrate cycle II
MC28_1562	PWY-5642	2,4-dinitrotoluene degradation
MC28_1562	PWY-6373	acrylate degradation
MC28_1574	PWY-5901	2,3-dihydroxybenzoate biosynthesis
MC28_1575	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
MC28_1575	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
MC28_1575	PWY-5901	2,3-dihydroxybenzoate biosynthesis
MC28_1575	PWY-6406	salicylate biosynthesis I
MC28_1577	PWY-5901	2,3-dihydroxybenzoate biosynthesis
MC28_1581	PWY-6012	acyl carrier protein metabolism I
MC28_1581	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
MC28_1635	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MC28_1635	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MC28_1644	PWY-2941	L-lysine biosynthesis II
MC28_1644	PWY-2942	L-lysine biosynthesis III
MC28_1644	PWY-5097	L-lysine biosynthesis VI
MC28_1644	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MC28_1644	PWY-6559	spermidine biosynthesis II
MC28_1644	PWY-6562	norspermidine biosynthesis
MC28_1644	PWY-7153	grixazone biosynthesis
MC28_1644	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MC28_1668	PWY-7310	D-glucosaminate degradation
MC28_1669	PWY-7310	D-glucosaminate degradation
MC28_1686	PWY-1622	formaldehyde assimilation I (serine pathway)
MC28_1686	PWY-5484	glycolysis II (from fructose 6-phosphate)
MC28_1695	PWY-43	putrescine biosynthesis II
MC28_1702	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
MC28_1702	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
MC28_1734	PWY-4381	fatty acid biosynthesis initiation I
MC28_1734	PWY-5743	3-hydroxypropanoate cycle
MC28_1734	PWY-5744	glyoxylate assimilation
MC28_1734	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
MC28_1734	PWY-6679	jadomycin biosynthesis
MC28_1734	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
MC28_1756	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
MC28_1756	PWY-6153	autoinducer AI-2 biosynthesis I
MC28_1756	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
MC28_1790	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MC28_1808	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_1808	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_1809	PWY-6899	base-degraded thiamin salvage
MC28_1809	PWY-7356	thiamin salvage IV (yeast)
MC28_1836	PWY-5331	taurine biosynthesis
MC28_1842	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_1842	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_1874	PWY-6788	cellulose degradation II (fungi)
MC28_1914	PWY-7153	grixazone biosynthesis
MC28_1929	PWY-842	starch degradation I
MC28_1952	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
MC28_1952	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
MC28_1953	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
MC28_1953	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
MC28_1964	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
MC28_1964	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
MC28_1981	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
MC28_1981	PWY-5723	Rubisco shunt
MC28_2021	PWY-2941	L-lysine biosynthesis II
MC28_2021	PWY-2942	L-lysine biosynthesis III
MC28_2021	PWY-5097	L-lysine biosynthesis VI
MC28_2024	PWY-4261	glycerol degradation I
MC28_2024	PWY-6118	glycerol-3-phosphate shuttle
MC28_2024	PWY-6952	glycerophosphodiester degradation
MC28_2088	PWY-5971	palmitate biosynthesis II (bacteria and plants)
MC28_2088	PWY-5973	<i>cis</i>-vaccenate biosynthesis
MC28_2088	PWY-5989	stearate biosynthesis II (bacteria and plants)
MC28_2088	PWY-5994	palmitate biosynthesis I (animals and fungi)
MC28_2088	PWY-6113	superpathway of mycolate biosynthesis
MC28_2088	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
MC28_2088	PWY-6519	8-amino-7-oxononanoate biosynthesis I
MC28_2088	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
MC28_2088	PWYG-321	mycolate biosynthesis
MC28_2089	PWY-3961	phosphopantothenate biosynthesis II
MC28_2139	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
MC28_2142	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
MC28_2143	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
MC28_2143	PWY-3461	L-tyrosine biosynthesis II
MC28_2143	PWY-3462	L-phenylalanine biosynthesis II
MC28_2143	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
MC28_2143	PWY-6120	L-tyrosine biosynthesis III
MC28_2143	PWY-6164	3-dehydroquinate biosynthesis I
MC28_2143	PWY-6627	salinosporamide A biosynthesis
MC28_2158	PWY-7254	TCA cycle VII (acetate-producers)
MC28_2165	PWY-4261	glycerol degradation I
MC28_2181	PWY-3341	L-proline biosynthesis III
MC28_2181	PWY-4981	L-proline biosynthesis II (from arginine)
MC28_2181	PWY-6344	L-ornithine degradation II (Stickland reaction)
MC28_2189	PWY-5491	diethylphosphate degradation
MC28_2206	PWY-5506	methanol oxidation to formaldehyde IV
MC28_2209	PWY-6610	adenine and adenosine salvage IV
MC28_2314	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
MC28_2314	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MC28_2314	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
MC28_2314	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
MC28_2359	PWY-5451	acetone degradation I (to methylglyoxal)
MC28_2359	PWY-5665	vanillin biosynthesis I
MC28_2359	PWY-6398	melatonin degradation I
MC28_2359	PWY-6992	1,5-anhydrofructose degradation
MC28_2359	PWY-7466	acetone degradation III (to propane-1,2-diol)
MC28_2371	PWY-4381	fatty acid biosynthesis initiation I
MC28_2399	PWY-7193	pyrimidine ribonucleosides salvage I
MC28_2416	PWY-5642	2,4-dinitrotoluene degradation
MC28_2416	PWY-6373	acrylate degradation
MC28_2417	PWY-5692	allantoin degradation to glyoxylate II
MC28_2417	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
MC28_2463	PWY-1042	glycolysis IV (plant cytosol)
MC28_2463	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
MC28_2463	PWY-5484	glycolysis II (from fructose 6-phosphate)
MC28_2463	PWY-5723	Rubisco shunt
MC28_2463	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MC28_2463	PWY-6886	1-butanol autotrophic biosynthesis
MC28_2463	PWY-6901	superpathway of glucose and xylose degradation
MC28_2463	PWY-7003	glycerol degradation to butanol
MC28_2463	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
MC28_2463	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
MC28_2487	PWY-7560	methylerythritol phosphate pathway II
MC28_2502	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
MC28_2502	PWY-5940	streptomycin biosynthesis
MC28_2503	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
MC28_2510	PWY-4261	glycerol degradation I
MC28_2510	PWY-5530	sorbitol biosynthesis II
MC28_2512	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
MC28_2512	PWY-5723	Rubisco shunt
MC28_2514	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
MC28_2514	PWY-5723	Rubisco shunt
MC28_2514	PWY-6891	thiazole biosynthesis II (Bacillus)
MC28_2514	PWY-6892	thiazole biosynthesis I (E. coli)
MC28_2514	PWY-6901	superpathway of glucose and xylose degradation
MC28_2514	PWY-7560	methylerythritol phosphate pathway II
MC28_2515	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
MC28_2516	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
MC28_2527	PWY-6168	flavin biosynthesis III (fungi)
MC28_2527	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
MC28_2563	PWY-5663	tetrahydrobiopterin biosynthesis I
MC28_2563	PWY-5664	tetrahydrobiopterin biosynthesis II
MC28_2563	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
MC28_2563	PWY-6703	preQ<sub>0</sub> biosynthesis
MC28_2563	PWY-6983	tetrahydrobiopterin biosynthesis III
MC28_2563	PWY-7442	drosopterin and aurodrosopterin biosynthesis
MC28_2635	PWY-842	starch degradation I
MC28_2636	PWY-7153	grixazone biosynthesis
MC28_2638	PWY-43	putrescine biosynthesis II
MC28_2641	PWY-43	putrescine biosynthesis II
MC28_2644	PWY-43	putrescine biosynthesis II
MC28_2662	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_2662	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_2698	PWY-4983	L-citrulline-nitric oxide cycle
MC28_2698	PWY-4984	urea cycle
MC28_2698	PWY-5	canavanine biosynthesis
MC28_2698	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MC28_2698	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MC28_2704	PWY-5367	petroselinate biosynthesis
MC28_2704	PWY-5971	palmitate biosynthesis II (bacteria and plants)
MC28_2704	PWY-5973	<i>cis</i>-vaccenate biosynthesis
MC28_2704	PWY-5989	stearate biosynthesis II (bacteria and plants)
MC28_2704	PWY-5994	palmitate biosynthesis I (animals and fungi)
MC28_2704	PWY-6113	superpathway of mycolate biosynthesis
MC28_2704	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
MC28_2704	PWY-6519	8-amino-7-oxononanoate biosynthesis I
MC28_2704	PWY-6951	MC28_2704
MC28_2704	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
MC28_2704	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
MC28_2704	PWYG-321	mycolate biosynthesis
MC28_2714	PWY-6823	molybdenum cofactor biosynthesis
MC28_2715	PWY-6823	molybdenum cofactor biosynthesis
MC28_2718	PWY-6823	molybdenum cofactor biosynthesis
MC28_2722	PWY-1881	formate oxidation to CO<sub>2</sub>
MC28_2722	PWY-5497	purine nucleobases degradation II (anaerobic)
MC28_2722	PWY-6696	oxalate degradation III
MC28_2752	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
MC28_2752	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MC28_2752	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MC28_2794	PWY-5028	L-histidine degradation II
MC28_2794	PWY-5030	L-histidine degradation III
MC28_2795	PWY-5028	L-histidine degradation II
MC28_2795	PWY-5030	L-histidine degradation III
MC28_2796	PWY-5028	L-histidine degradation II
MC28_2796	PWY-5030	L-histidine degradation III
MC28_2827	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
MC28_2827	PWY-5723	Rubisco shunt
MC28_2827	PWY-6891	thiazole biosynthesis II (Bacillus)
MC28_2827	PWY-6892	thiazole biosynthesis I (E. coli)
MC28_2827	PWY-6901	superpathway of glucose and xylose degradation
MC28_2827	PWY-7560	methylerythritol phosphate pathway II
MC28_2848	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_2848	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_2864	PWY-381	nitrate reduction II (assimilatory)
MC28_2864	PWY-5675	nitrate reduction V (assimilatory)
MC28_2864	PWY-6549	L-glutamine biosynthesis III
MC28_2864	PWY-6963	ammonia assimilation cycle I
MC28_2864	PWY-6964	ammonia assimilation cycle II
MC28_2877	PWY-2781	<i>cis</i>-zeatin biosynthesis
MC28_2880	PWY-7310	D-glucosaminate degradation
MC28_2881	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
MC28_2881	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
MC28_2888	PWY-6902	chitin degradation II
MC28_2916	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
MC28_2916	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
MC28_2916	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
MC28_2916	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
MC28_2944	PWY-7533	gliotoxin biosynthesis
MC28_2952	PWY-5269	cardiolipin biosynthesis II
MC28_2952	PWY-5668	cardiolipin biosynthesis I
MC28_2968	PWY-2941	L-lysine biosynthesis II
MC28_2968	PWY-2942	L-lysine biosynthesis III
MC28_2968	PWY-5097	L-lysine biosynthesis VI
MC28_2969	PWY-2941	L-lysine biosynthesis II
MC28_2969	PWY-2942	L-lysine biosynthesis III
MC28_2969	PWY-5097	L-lysine biosynthesis VI
MC28_2969	PWY-6559	spermidine biosynthesis II
MC28_2969	PWY-6562	norspermidine biosynthesis
MC28_2969	PWY-7153	grixazone biosynthesis
MC28_2970	PWY-2941	L-lysine biosynthesis II
MC28_2970	PWY-2942	L-lysine biosynthesis III
MC28_2970	PWY-5097	L-lysine biosynthesis VI
MC28_2970	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MC28_2970	PWY-6559	spermidine biosynthesis II
MC28_2970	PWY-6562	norspermidine biosynthesis
MC28_2970	PWY-7153	grixazone biosynthesis
MC28_2970	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MC28_3033	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
MC28_3033	PWY-6167	flavin biosynthesis II (archaea)
MC28_3033	PWY-6168	flavin biosynthesis III (fungi)
MC28_3044	PWY-7560	methylerythritol phosphate pathway II
MC28_3058	PWY-5392	reductive TCA cycle II
MC28_3058	PWY-5537	pyruvate fermentation to acetate V
MC28_3058	PWY-5538	pyruvate fermentation to acetate VI
MC28_3058	PWY-5690	TCA cycle II (plants and fungi)
MC28_3058	PWY-5913	TCA cycle VI (obligate autotrophs)
MC28_3058	PWY-6728	methylaspartate cycle
MC28_3058	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MC28_3058	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
MC28_3059	PWY-5392	reductive TCA cycle II
MC28_3059	PWY-5537	pyruvate fermentation to acetate V
MC28_3059	PWY-5538	pyruvate fermentation to acetate VI
MC28_3059	PWY-5690	TCA cycle II (plants and fungi)
MC28_3059	PWY-5913	TCA cycle VI (obligate autotrophs)
MC28_3059	PWY-6728	methylaspartate cycle
MC28_3059	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MC28_3059	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
MC28_3064	PWY-6829	tRNA methylation (yeast)
MC28_3064	PWY-7285	methylwyosine biosynthesis
MC28_3064	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
MC28_3074	PWY-5367	petroselinate biosynthesis
MC28_3074	PWY-5971	palmitate biosynthesis II (bacteria and plants)
MC28_3074	PWY-5973	<i>cis</i>-vaccenate biosynthesis
MC28_3074	PWY-5989	stearate biosynthesis II (bacteria and plants)
MC28_3074	PWY-5994	palmitate biosynthesis I (animals and fungi)
MC28_3074	PWY-6113	superpathway of mycolate biosynthesis
MC28_3074	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
MC28_3074	PWY-6519	8-amino-7-oxononanoate biosynthesis I
MC28_3074	PWY-6951	MC28_3074
MC28_3074	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
MC28_3074	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
MC28_3074	PWYG-321	mycolate biosynthesis
MC28_3075	PWY-4381	fatty acid biosynthesis initiation I
MC28_3075	PWY-6799	fatty acid biosynthesis (plant mitochondria)
MC28_3075	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
MC28_3082	PWY-6898	thiamin salvage III
MC28_3082	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
MC28_3082	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
MC28_3083	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
MC28_3083	PWY-5723	Rubisco shunt
MC28_3094	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
MC28_3105	PWY-5686	UMP biosynthesis
MC28_3106	PWY-5686	UMP biosynthesis
MC28_3109	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MC28_3109	PWY-5686	UMP biosynthesis
MC28_3109	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MC28_3110	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MC28_3110	PWY-5686	UMP biosynthesis
MC28_3110	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MC28_3111	PWY-5686	UMP biosynthesis
MC28_3112	PWY-5686	UMP biosynthesis
MC28_3114	PWY-7183	pyrimidine nucleobases salvage I
MC28_3122	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
MC28_3131	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_3131	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_3132	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
MC28_3132	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
MC28_3132	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
MC28_3132	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
MC28_3134	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_3134	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_3135	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
MC28_3135	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
MC28_3135	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
MC28_3142	PWY-6654	phosphopantothenate biosynthesis III
MC28_3224	PWY-7142	cyanide detoxification II
MC28_3226	PWY-3781	aerobic respiration I (cytochrome c)
MC28_3226	PWY-4521	arsenite oxidation I (respiratory)
MC28_3226	PWY-6692	Fe(II) oxidation
MC28_3226	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
MC28_3228	PWY-3781	aerobic respiration I (cytochrome c)
MC28_3228	PWY-4521	arsenite oxidation I (respiratory)
MC28_3228	PWY-6692	Fe(II) oxidation
MC28_3228	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
MC28_3232	PWY-5750	itaconate biosynthesis
MC28_3232	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MC28_3232	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
MC28_3238	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
MC28_3238	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
MC28_3258	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
MC28_3258	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
MC28_3269	PWY-2941	L-lysine biosynthesis II
MC28_3270	PWY-2941	L-lysine biosynthesis II
MC28_3293	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
MC28_3293	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
MC28_3293	PWY-6936	seleno-amino acid biosynthesis
MC28_3293	PWY-702	L-methionine biosynthesis II
MC28_3324	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
MC28_3324	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
MC28_3325	PWY-6754	<i>S</i>-methyl-5'-thioadenosine degradation I
MC28_3328	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
MC28_3328	PWY-5532	adenosine nucleotides degradation IV
MC28_3328	PWY-5723	Rubisco shunt
MC28_3329	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
MC28_3330	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
MC28_3331	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
MC28_3331	PWY-5389	3-methylthiopropanoate biosynthesis
MC28_3342	PWY-7310	D-glucosaminate degradation
MC28_3346	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
MC28_3346	PWY-6855	chitin degradation I (archaea)
MC28_3346	PWY-6906	chitin derivatives degradation
MC28_3347	PWY-6906	chitin derivatives degradation
MC28_3347	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
MC28_3347	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
MC28_3368	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
MC28_3368	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
MC28_3378	PWY-7181	pyrimidine deoxyribonucleosides degradation
MC28_3379	PWY-4202	arsenate detoxification I (glutaredoxin)
MC28_3379	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
MC28_3379	PWY-6608	guanosine nucleotides degradation III
MC28_3379	PWY-6609	adenine and adenosine salvage III
MC28_3379	PWY-6611	adenine and adenosine salvage V
MC28_3379	PWY-6620	guanine and guanosine salvage
MC28_3379	PWY-6627	salinosporamide A biosynthesis
MC28_3379	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
MC28_3379	PWY-7179	purine deoxyribonucleosides degradation I
MC28_3379	PWY-7179-1	purine deoxyribonucleosides degradation
MC28_3380	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
MC28_3403	PWY-6167	flavin biosynthesis II (archaea)
MC28_3403	PWY-6168	flavin biosynthesis III (fungi)
MC28_3403	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MC28_3404	PWY-6167	flavin biosynthesis II (archaea)
MC28_3404	PWY-6168	flavin biosynthesis III (fungi)
MC28_3404	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
MC28_3405	PWY-6167	flavin biosynthesis II (archaea)
MC28_3405	PWY-6168	flavin biosynthesis III (fungi)
MC28_3407	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
MC28_3408	PWY-6519	8-amino-7-oxononanoate biosynthesis I
MC28_3410	PWY-6519	8-amino-7-oxononanoate biosynthesis I
MC28_3410	PWY-6578	8-amino-7-oxononanoate biosynthesis III
MC28_3410	PWY-7147	8-amino-7-oxononanoate biosynthesis II
MC28_3411	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
MC28_3420	PWY-4981	L-proline biosynthesis II (from arginine)
MC28_3420	PWY-4984	urea cycle
MC28_3420	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MC28_3422	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MC28_3422	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MC28_3423	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MC28_3424	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MC28_3424	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MC28_3428	PWY-3341	L-proline biosynthesis III
MC28_3428	PWY-4981	L-proline biosynthesis II (from arginine)
MC28_3428	PWY-6344	L-ornithine degradation II (Stickland reaction)
MC28_3454	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
MC28_3454	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
MC28_3455	PWY-5482	pyruvate fermentation to acetate II
MC28_3455	PWY-5485	pyruvate fermentation to acetate IV
MC28_3455	PWY-5497	purine nucleobases degradation II (anaerobic)
MC28_3457	PWY-1281	sulfoacetaldehyde degradation I
MC28_3457	PWY-5482	pyruvate fermentation to acetate II
MC28_3457	PWY-5485	pyruvate fermentation to acetate IV
MC28_3457	PWY-5497	purine nucleobases degradation II (anaerobic)
MC28_3457	PWY-6637	sulfolactate degradation II
MC28_3469	PWY-6891	thiazole biosynthesis II (Bacillus)
MC28_3469	PWY-6892	thiazole biosynthesis I (E. coli)
MC28_3469	PWY-7560	methylerythritol phosphate pathway II
MC28_3473	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
MC28_3473	PWY-2201	folate transformations I
MC28_3473	PWY-3841	folate transformations II
MC28_3473	PWY-5030	L-histidine degradation III
MC28_3473	PWY-5497	purine nucleobases degradation II (anaerobic)
MC28_3473	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
MC28_3492	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
MC28_3492	PWY-6416	quinate degradation II
MC28_3492	PWY-6707	gallate biosynthesis
MC28_3502	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
MC28_3502	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
MC28_3527	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
MC28_3545	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
MC28_3545	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
MC28_3545	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
MC28_3545	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
MC28_3546	PWY-2201	folate transformations I
MC28_3546	PWY-3841	folate transformations II
MC28_3547	PWY-2201	folate transformations I
MC28_3547	PWY-3841	folate transformations II
MC28_3556	PWY-2723	trehalose degradation V
MC28_3556	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
MC28_3556	PWY-5661	GDP-glucose biosynthesis
MC28_3556	PWY-7238	sucrose biosynthesis II
MC28_3556	PWY-7385	1,3-propanediol biosynthesis (engineered)
MC28_3559	PWY-6749	CMP-legionaminate biosynthesis I
MC28_3567	PWY-6854	ethylene biosynthesis III (microbes)
MC28_3570	PWY-7560	methylerythritol phosphate pathway II
MC28_3580	PWY-7560	methylerythritol phosphate pathway II
MC28_3581	PWY-5663	tetrahydrobiopterin biosynthesis I
MC28_3581	PWY-5664	tetrahydrobiopterin biosynthesis II
MC28_3581	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
MC28_3581	PWY-6703	preQ<sub>0</sub> biosynthesis
MC28_3581	PWY-6983	tetrahydrobiopterin biosynthesis III
MC28_3581	PWY-7442	drosopterin and aurodrosopterin biosynthesis
MC28_3592	PWY-6556	pyrimidine ribonucleosides salvage II
MC28_3592	PWY-7181	pyrimidine deoxyribonucleosides degradation
MC28_3592	PWY-7193	pyrimidine ribonucleosides salvage I
MC28_3592	PWY-7199	pyrimidine deoxyribonucleosides salvage
MC28_3593	PWY-7039	phosphatidate metabolism, as a signaling molecule
MC28_3620	PWY-3341	L-proline biosynthesis III
MC28_3620	PWY-4981	L-proline biosynthesis II (from arginine)
MC28_3620	PWY-6344	L-ornithine degradation II (Stickland reaction)
MC28_3624	PWY-5381	pyridine nucleotide cycling (plants)
MC28_3624	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
MC28_3626	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
MC28_3630	PWY-5669	phosphatidylethanolamine biosynthesis I
MC28_3638	PWY-5491	diethylphosphate degradation
MC28_3649	PWY-7158	L-phenylalanine degradation V
MC28_3662	PWY-3162	L-tryptophan degradation V (side chain pathway)
MC28_3662	PWY-5057	L-valine degradation II
MC28_3662	PWY-5076	L-leucine degradation III
MC28_3662	PWY-5078	L-isoleucine degradation II
MC28_3662	PWY-5079	L-phenylalanine degradation III
MC28_3662	PWY-5082	L-methionine degradation III
MC28_3662	PWY-5162	2-oxopentenoate degradation
MC28_3662	PWY-5436	L-threonine degradation IV
MC28_3662	PWY-5480	pyruvate fermentation to ethanol I
MC28_3662	PWY-5486	pyruvate fermentation to ethanol II
MC28_3662	PWY-5751	phenylethanol biosynthesis
MC28_3662	PWY-6028	acetoin degradation
MC28_3662	PWY-6313	serotonin degradation
MC28_3662	PWY-6333	acetaldehyde biosynthesis I
MC28_3662	PWY-6342	noradrenaline and adrenaline degradation
MC28_3662	PWY-6587	pyruvate fermentation to ethanol III
MC28_3662	PWY-6802	salidroside biosynthesis
MC28_3662	PWY-6871	3-methylbutanol biosynthesis
MC28_3662	PWY-7013	L-1,2-propanediol degradation
MC28_3662	PWY-7085	triethylamine degradation
MC28_3662	PWY-7111	pyruvate fermentation to isobutanol (engineered)
MC28_3662	PWY-7118	chitin degradation to ethanol
MC28_3662	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
MC28_3662	PWY-7396	butanol and isobutanol biosynthesis (engineered)
MC28_3662	PWY-7557	dehydrodiconiferyl alcohol degradation
MC28_3665	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
MC28_3665	PWY-6153	autoinducer AI-2 biosynthesis I
MC28_3665	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
MC28_3671	PWY-7193	pyrimidine ribonucleosides salvage I
MC28_3688	PWY-6823	molybdenum cofactor biosynthesis
MC28_3688	PWY-6891	thiazole biosynthesis II (Bacillus)
MC28_3688	PWY-6892	thiazole biosynthesis I (E. coli)
MC28_3688	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
MC28_3700	PWY-6605	adenine and adenosine salvage II
MC28_3700	PWY-6610	adenine and adenosine salvage IV
MC28_3709	PWY-6700	queuosine biosynthesis
MC28_3710	PWY-6700	queuosine biosynthesis
MC28_3719	PWY-5316	nicotine biosynthesis
MC28_3719	PWY-7342	superpathway of nicotine biosynthesis
MC28_3720	PWY-5316	nicotine biosynthesis
MC28_3720	PWY-5381	pyridine nucleotide cycling (plants)
MC28_3720	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
MC28_3720	PWY-7342	superpathway of nicotine biosynthesis
MC28_3721	PWY-5316	nicotine biosynthesis
MC28_3721	PWY-7342	superpathway of nicotine biosynthesis
MC28_3722	PWY-6823	molybdenum cofactor biosynthesis
MC28_3722	PWY-6891	thiazole biosynthesis II (Bacillus)
MC28_3722	PWY-6892	thiazole biosynthesis I (E. coli)
MC28_3722	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
MC28_3725	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
MC28_3749	PWY-2161	folate polyglutamylation
MC28_3753	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MC28_3754	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MC28_3754	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
MC28_3755	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MC28_3755	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
MC28_3756	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MC28_3756	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
MC28_3758	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MC28_3771	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
MC28_3774	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_3774	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_3794	PWY-3781	aerobic respiration I (cytochrome c)
MC28_3794	PWY-4302	aerobic respiration III (alternative oxidase pathway)
MC28_3794	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
MC28_3794	PWY-5690	TCA cycle II (plants and fungi)
MC28_3794	PWY-6728	methylaspartate cycle
MC28_3794	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MC28_3794	PWY-7254	TCA cycle VII (acetate-producers)
MC28_3794	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
MC28_3795	PWY-3781	aerobic respiration I (cytochrome c)
MC28_3795	PWY-4302	aerobic respiration III (alternative oxidase pathway)
MC28_3795	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
MC28_3795	PWY-5690	TCA cycle II (plants and fungi)
MC28_3795	PWY-6728	methylaspartate cycle
MC28_3795	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MC28_3795	PWY-7254	TCA cycle VII (acetate-producers)
MC28_3795	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
MC28_3860	PWY-6834	spermidine biosynthesis III
MC28_3861	PWY-1042	glycolysis IV (plant cytosol)
MC28_3861	PWY-5484	glycolysis II (from fructose 6-phosphate)
MC28_3861	PWY-6901	superpathway of glucose and xylose degradation
MC28_3861	PWY-7003	glycerol degradation to butanol
MC28_3870	PWY-1622	formaldehyde assimilation I (serine pathway)
MC28_3870	PWY-5392	reductive TCA cycle II
MC28_3870	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
MC28_3870	PWY-5690	TCA cycle II (plants and fungi)
MC28_3870	PWY-5913	TCA cycle VI (obligate autotrophs)
MC28_3870	PWY-6728	methylaspartate cycle
MC28_3870	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MC28_3870	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
MC28_3870	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
MC28_3871	PWY-5913	TCA cycle VI (obligate autotrophs)
MC28_3871	PWY-6549	L-glutamine biosynthesis III
MC28_3871	PWY-6728	methylaspartate cycle
MC28_3871	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MC28_3871	PWY-7124	ethylene biosynthesis V (engineered)
MC28_3871	PWY-7254	TCA cycle VII (acetate-producers)
MC28_3871	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
MC28_3876	PWY-1042	glycolysis IV (plant cytosol)
MC28_3876	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
MC28_3876	PWY-5484	glycolysis II (from fructose 6-phosphate)
MC28_3876	PWY-5723	Rubisco shunt
MC28_3876	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MC28_3876	PWY-6886	1-butanol autotrophic biosynthesis
MC28_3876	PWY-6901	superpathway of glucose and xylose degradation
MC28_3876	PWY-7003	glycerol degradation to butanol
MC28_3876	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
MC28_3876	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
MC28_3877	PWY-1042	glycolysis IV (plant cytosol)
MC28_3877	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
MC28_3877	PWY-5484	glycolysis II (from fructose 6-phosphate)
MC28_3877	PWY-7385	1,3-propanediol biosynthesis (engineered)
MC28_3878	PWY-4381	fatty acid biosynthesis initiation I
MC28_3878	PWY-5743	3-hydroxypropanoate cycle
MC28_3878	PWY-5744	glyoxylate assimilation
MC28_3878	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
MC28_3878	PWY-6679	jadomycin biosynthesis
MC28_3878	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
MC28_3879	PWY-4381	fatty acid biosynthesis initiation I
MC28_3879	PWY-5743	3-hydroxypropanoate cycle
MC28_3879	PWY-5744	glyoxylate assimilation
MC28_3879	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
MC28_3879	PWY-6679	jadomycin biosynthesis
MC28_3879	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
MC28_3888	PWY-1281	sulfoacetaldehyde degradation I
MC28_3888	PWY-5482	pyruvate fermentation to acetate II
MC28_3888	PWY-5485	pyruvate fermentation to acetate IV
MC28_3888	PWY-5497	purine nucleobases degradation II (anaerobic)
MC28_3888	PWY-6637	sulfolactate degradation II
MC28_3907	PWY-4983	L-citrulline-nitric oxide cycle
MC28_3907	PWY-4984	urea cycle
MC28_3907	PWY-5	canavanine biosynthesis
MC28_3907	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MC28_3907	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MC28_3908	PWY-4983	L-citrulline-nitric oxide cycle
MC28_3908	PWY-4984	urea cycle
MC28_3908	PWY-5	canavanine biosynthesis
MC28_3908	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MC28_3908	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MC28_3915	PWY-5482	pyruvate fermentation to acetate II
MC28_3915	PWY-5485	pyruvate fermentation to acetate IV
MC28_3915	PWY-5497	purine nucleobases degradation II (anaerobic)
MC28_3920	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
MC28_3920	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
MC28_3920	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
MC28_3926	PWY-6823	molybdenum cofactor biosynthesis
MC28_3926	PWY-6891	thiazole biosynthesis II (Bacillus)
MC28_3926	PWY-6892	thiazole biosynthesis I (E. coli)
MC28_3926	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
MC28_3957	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
MC28_3957	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
MC28_3967	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_3967	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_3968	PWY-5381	pyridine nucleotide cycling (plants)
MC28_3982	PWY-842	starch degradation I
MC28_3999	PWY-6823	molybdenum cofactor biosynthesis
MC28_4001	PWY-6823	molybdenum cofactor biosynthesis
MC28_4004	PWY-6823	molybdenum cofactor biosynthesis
MC28_4010	PWY-5344	L-homocysteine biosynthesis
MC28_4034	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_4034	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_4049	PWY-5964	guanylyl molybdenum cofactor biosynthesis
MC28_4053	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
MC28_4053	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
MC28_4054	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
MC28_4054	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
MC28_4060	PWY-5663	tetrahydrobiopterin biosynthesis I
MC28_4060	PWY-5664	tetrahydrobiopterin biosynthesis II
MC28_4060	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
MC28_4060	PWY-6703	preQ<sub>0</sub> biosynthesis
MC28_4060	PWY-6983	tetrahydrobiopterin biosynthesis III
MC28_4060	PWY-7442	drosopterin and aurodrosopterin biosynthesis
MC28_4063	PWY-5506	methanol oxidation to formaldehyde IV
MC28_4075	PWY-6502	oxidized GTP and dGTP detoxification
MC28_4080	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
MC28_4080	PWY-6153	autoinducer AI-2 biosynthesis I
MC28_4080	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
MC28_4081	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
MC28_4081	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MC28_4081	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
MC28_4081	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
MC28_4103	PWY-6599	guanine and guanosine salvage II
MC28_4103	PWY-6609	adenine and adenosine salvage III
MC28_4103	PWY-6610	adenine and adenosine salvage IV
MC28_4103	PWY-6620	guanine and guanosine salvage
MC28_4104	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
MC28_4104	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
MC28_4104	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
MC28_4135	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
MC28_4135	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
MC28_4135	PWY-7242	D-fructuronate degradation
MC28_4135	PWY-7310	D-glucosaminate degradation
MC28_4136	PWY-7310	D-glucosaminate degradation
MC28_4141	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
MC28_4141	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
MC28_4142	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
MC28_4142	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
MC28_4143	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
MC28_4143	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
MC28_4144	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
MC28_4144	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
MC28_4145	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
MC28_4145	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
MC28_4146	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
MC28_4146	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
MC28_4146	PWY-5901	2,3-dihydroxybenzoate biosynthesis
MC28_4146	PWY-6406	salicylate biosynthesis I
MC28_4147	PWY-5839	menaquinol-7 biosynthesis
MC28_4147	PWY-5851	demethylmenaquinol-9 biosynthesis
MC28_4147	PWY-5852	demethylmenaquinol-8 biosynthesis I
MC28_4147	PWY-5853	demethylmenaquinol-6 biosynthesis I
MC28_4147	PWY-5890	menaquinol-10 biosynthesis
MC28_4147	PWY-5891	menaquinol-11 biosynthesis
MC28_4147	PWY-5892	menaquinol-12 biosynthesis
MC28_4147	PWY-5895	menaquinol-13 biosynthesis
MC28_4153	PWY-5941	glycogen degradation II (eukaryotic)
MC28_4153	PWY-622	starch biosynthesis
MC28_4153	PWY-6731	starch degradation III
MC28_4153	PWY-6737	starch degradation V
MC28_4153	PWY-7238	sucrose biosynthesis II
MC28_4154	PWY-622	starch biosynthesis
MC28_4156	PWY-622	starch biosynthesis
MC28_4157	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
MC28_4157	PWY-622	starch biosynthesis
MC28_4160	PWY-5481	pyruvate fermentation to lactate
MC28_4160	PWY-6901	superpathway of glucose and xylose degradation
MC28_4166	PWY-3801	sucrose degradation II (sucrose synthase)
MC28_4166	PWY-5054	sorbitol biosynthesis I
MC28_4166	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
MC28_4166	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
MC28_4166	PWY-5659	GDP-mannose biosynthesis
MC28_4166	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MC28_4166	PWY-621	sucrose degradation III (sucrose invertase)
MC28_4166	PWY-622	starch biosynthesis
MC28_4166	PWY-6531	mannitol cycle
MC28_4166	PWY-6981	chitin biosynthesis
MC28_4166	PWY-7238	sucrose biosynthesis II
MC28_4166	PWY-7347	sucrose biosynthesis III
MC28_4166	PWY-7385	1,3-propanediol biosynthesis (engineered)
MC28_4174	PWY-6936	seleno-amino acid biosynthesis
MC28_4175	PWY-6854	ethylene biosynthesis III (microbes)
MC28_4187	PWY-3801	sucrose degradation II (sucrose synthase)
MC28_4187	PWY-6527	stachyose degradation
MC28_4187	PWY-6981	chitin biosynthesis
MC28_4187	PWY-7238	sucrose biosynthesis II
MC28_4187	PWY-7343	UDP-glucose biosynthesis
MC28_4188	PWY-6749	CMP-legionaminate biosynthesis I
MC28_4190	PWY-5988	wound-induced proteolysis I
MC28_4190	PWY-6018	seed germination protein turnover
MC28_4195	PWY-101	photosynthesis light reactions
MC28_4195	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
MC28_4204	PWY-2941	L-lysine biosynthesis II
MC28_4204	PWY-5097	L-lysine biosynthesis VI
MC28_4227	PWY-5484	glycolysis II (from fructose 6-phosphate)
MC28_4238	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
MC28_4238	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
MC28_4238	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
MC28_4245	PWY-6823	molybdenum cofactor biosynthesis
MC28_4245	PWY-6891	thiazole biosynthesis II (Bacillus)
MC28_4245	PWY-6892	thiazole biosynthesis I (E. coli)
MC28_4245	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
MC28_4264	PWY-7310	D-glucosaminate degradation
MC28_4265	PWY-5481	pyruvate fermentation to lactate
MC28_4265	PWY-6901	superpathway of glucose and xylose degradation
MC28_4274	PWY-1361	benzoyl-CoA degradation I (aerobic)
MC28_4274	PWY-5109	2-methylbutanoate biosynthesis
MC28_4274	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
MC28_4274	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
MC28_4274	PWY-5177	glutaryl-CoA degradation
MC28_4274	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
MC28_4274	PWY-6435	4-hydroxybenzoate biosynthesis V
MC28_4274	PWY-6583	pyruvate fermentation to butanol I
MC28_4274	PWY-6863	pyruvate fermentation to hexanol
MC28_4274	PWY-6883	pyruvate fermentation to butanol II
MC28_4274	PWY-6944	androstenedione degradation
MC28_4274	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
MC28_4274	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
MC28_4274	PWY-7007	methyl ketone biosynthesis
MC28_4274	PWY-7046	4-coumarate degradation (anaerobic)
MC28_4274	PWY-7094	fatty acid salvage
MC28_4274	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
MC28_4274	PWY-735	jasmonic acid biosynthesis
MC28_4274	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
MC28_4277	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
MC28_4277	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
MC28_4333	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_4333	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_4334	PWY-6424	MC28_4334
MC28_4351	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
MC28_4351	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MC28_4351	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
MC28_4351	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
MC28_4367	PWY-1042	glycolysis IV (plant cytosol)
MC28_4367	PWY-1622	formaldehyde assimilation I (serine pathway)
MC28_4367	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
MC28_4367	PWY-5484	glycolysis II (from fructose 6-phosphate)
MC28_4367	PWY-5723	Rubisco shunt
MC28_4367	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MC28_4367	PWY-6886	1-butanol autotrophic biosynthesis
MC28_4367	PWY-6901	superpathway of glucose and xylose degradation
MC28_4367	PWY-7003	glycerol degradation to butanol
MC28_4367	PWY-7124	ethylene biosynthesis V (engineered)
MC28_4367	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
MC28_4368	PWY-1042	glycolysis IV (plant cytosol)
MC28_4368	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
MC28_4368	PWY-5484	glycolysis II (from fructose 6-phosphate)
MC28_4368	PWY-5723	Rubisco shunt
MC28_4368	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MC28_4368	PWY-6886	1-butanol autotrophic biosynthesis
MC28_4368	PWY-6901	superpathway of glucose and xylose degradation
MC28_4368	PWY-7003	glycerol degradation to butanol
MC28_4368	PWY-7124	ethylene biosynthesis V (engineered)
MC28_4368	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
MC28_4369	PWY-1042	glycolysis IV (plant cytosol)
MC28_4369	PWY-5484	glycolysis II (from fructose 6-phosphate)
MC28_4369	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MC28_4369	PWY-7003	glycerol degradation to butanol
MC28_4370	PWY-1042	glycolysis IV (plant cytosol)
MC28_4370	PWY-5484	glycolysis II (from fructose 6-phosphate)
MC28_4370	PWY-6886	1-butanol autotrophic biosynthesis
MC28_4370	PWY-6901	superpathway of glucose and xylose degradation
MC28_4370	PWY-7003	glycerol degradation to butanol
MC28_4371	PWY-1042	glycolysis IV (plant cytosol)
MC28_4371	PWY-5484	glycolysis II (from fructose 6-phosphate)
MC28_4371	PWY-6901	superpathway of glucose and xylose degradation
MC28_4371	PWY-7003	glycerol degradation to butanol
MC28_4382	PWY-1081	homogalacturonan degradation
MC28_4382	PWY-7246	pectin degradation II
MC28_4382	PWY-7248	pectin degradation III
MC28_4433	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
MC28_4434	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
MC28_4435	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
MC28_4435	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
MC28_4435	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
MC28_4443	PWY-7310	D-glucosaminate degradation
MC28_4444	PWY-7310	D-glucosaminate degradation
MC28_4447	PWY-6834	spermidine biosynthesis III
MC28_4449	PWY-7310	D-glucosaminate degradation
MC28_4450	PWY-7310	D-glucosaminate degradation
MC28_4461	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
MC28_4494	PWY-3821	galactose degradation III
MC28_4494	PWY-6317	galactose degradation I (Leloir pathway)
MC28_4494	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
MC28_4494	PWY-6527	stachyose degradation
MC28_4494	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
MC28_4494	PWY-7344	UDP-D-galactose biosynthesis
MC28_4510	PWY-3801	sucrose degradation II (sucrose synthase)
MC28_4510	PWY-6527	stachyose degradation
MC28_4510	PWY-6981	chitin biosynthesis
MC28_4510	PWY-7238	sucrose biosynthesis II
MC28_4510	PWY-7343	UDP-glucose biosynthesis
MC28_4515	PWY-5971	palmitate biosynthesis II (bacteria and plants)
MC28_4515	PWY-5973	<i>cis</i>-vaccenate biosynthesis
MC28_4515	PWY-5989	stearate biosynthesis II (bacteria and plants)
MC28_4515	PWY-5994	palmitate biosynthesis I (animals and fungi)
MC28_4515	PWY-6113	superpathway of mycolate biosynthesis
MC28_4515	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
MC28_4515	PWY-6519	8-amino-7-oxononanoate biosynthesis I
MC28_4515	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
MC28_4515	PWYG-321	mycolate biosynthesis
MC28_4524	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_4524	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_4542	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MC28_4544	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MC28_4552	PWY-7183	pyrimidine nucleobases salvage I
MC28_4553	PWY-1622	formaldehyde assimilation I (serine pathway)
MC28_4553	PWY-181	photorespiration
MC28_4553	PWY-2161	folate polyglutamylation
MC28_4553	PWY-2201	folate transformations I
MC28_4553	PWY-3661	glycine betaine degradation I
MC28_4553	PWY-3661-1	glycine betaine degradation II (mammalian)
MC28_4553	PWY-3841	folate transformations II
MC28_4553	PWY-5497	purine nucleobases degradation II (anaerobic)
MC28_4567	PWY-7199	pyrimidine deoxyribonucleosides salvage
MC28_4568	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MC28_4569	PWY-5484	glycolysis II (from fructose 6-phosphate)
MC28_4570	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_4570	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_4571	PWY-1042	glycolysis IV (plant cytosol)
MC28_4571	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
MC28_4571	PWY-5484	glycolysis II (from fructose 6-phosphate)
MC28_4571	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MC28_4571	PWY-7385	1,3-propanediol biosynthesis (engineered)
MC28_4574	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
MC28_4574	PWY-7177	UTP and CTP dephosphorylation II
MC28_4574	PWY-7185	UTP and CTP dephosphorylation I
MC28_4579	PWY-1361	benzoyl-CoA degradation I (aerobic)
MC28_4579	PWY-5109	2-methylbutanoate biosynthesis
MC28_4579	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
MC28_4579	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
MC28_4579	PWY-5177	glutaryl-CoA degradation
MC28_4579	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
MC28_4579	PWY-6435	4-hydroxybenzoate biosynthesis V
MC28_4579	PWY-6583	pyruvate fermentation to butanol I
MC28_4579	PWY-6863	pyruvate fermentation to hexanol
MC28_4579	PWY-6883	pyruvate fermentation to butanol II
MC28_4579	PWY-6944	androstenedione degradation
MC28_4579	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
MC28_4579	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
MC28_4579	PWY-7007	methyl ketone biosynthesis
MC28_4579	PWY-7046	4-coumarate degradation (anaerobic)
MC28_4579	PWY-7094	fatty acid salvage
MC28_4579	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
MC28_4579	PWY-735	jasmonic acid biosynthesis
MC28_4579	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
MC28_4602	PWY-7310	D-glucosaminate degradation
MC28_4603	PWY-40	putrescine biosynthesis I
MC28_4603	PWY-6305	putrescine biosynthesis IV
MC28_4619	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
MC28_4619	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
MC28_4620	PWY-1281	sulfoacetaldehyde degradation I
MC28_4620	PWY-5482	pyruvate fermentation to acetate II
MC28_4620	PWY-5485	pyruvate fermentation to acetate IV
MC28_4620	PWY-5497	purine nucleobases degradation II (anaerobic)
MC28_4620	PWY-6637	sulfolactate degradation II
MC28_4622	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
MC28_4622	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
MC28_4639	PWY-5344	L-homocysteine biosynthesis
MC28_4639	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
MC28_4646	PWY-6910	hydroxymethylpyrimidine salvage
MC28_4646	PWY-7356	thiamin salvage IV (yeast)
MC28_4646	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
MC28_4679	PWY-6854	ethylene biosynthesis III (microbes)
MC28_4683	PWY-3821	galactose degradation III
MC28_4683	PWY-6317	galactose degradation I (Leloir pathway)
MC28_4683	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
MC28_4683	PWY-6527	stachyose degradation
MC28_4683	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
MC28_4683	PWY-7344	UDP-D-galactose biosynthesis
MC28_4699	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MC28_4728	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
MC28_4728	PWY-6596	adenosine nucleotides degradation I
MC28_4728	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
MC28_4729	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
MC28_4729	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
MC28_4730	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
MC28_4731	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
MC28_4732	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
MC28_4745	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
MC28_4745	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
MC28_4745	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
MC28_4745	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
MC28_4745	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
MC28_4745	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
MC28_4760	PWY-7560	methylerythritol phosphate pathway II
MC28_4764	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
MC28_4778	PWY-6599	guanine and guanosine salvage II
MC28_4778	PWY-6609	adenine and adenosine salvage III
MC28_4778	PWY-6610	adenine and adenosine salvage IV
MC28_4778	PWY-6620	guanine and guanosine salvage
MC28_4780	PWY-3961	phosphopantothenate biosynthesis II
MC28_4782	PWY-6936	seleno-amino acid biosynthesis
MC28_4783	PWY-5958	acridone alkaloid biosynthesis
MC28_4783	PWY-6543	4-aminobenzoate biosynthesis
MC28_4783	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
MC28_4783	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
MC28_4783	PWY-6722	candicidin biosynthesis
MC28_4784	PWY-5958	acridone alkaloid biosynthesis
MC28_4784	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
MC28_4784	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
MC28_4786	PWY-6614	tetrahydrofolate biosynthesis
MC28_4787	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
MC28_4787	PWY-6148	tetrahydromethanopterin biosynthesis
MC28_4787	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
MC28_4787	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
MC28_4788	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
MC28_4788	PWY-6148	tetrahydromethanopterin biosynthesis
MC28_4788	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
MC28_4788	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
MC28_4798	PWY-7560	methylerythritol phosphate pathway II
MC28_4799	PWY-7560	methylerythritol phosphate pathway II
MC28_4800	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MC28_4801	PWY-6936	seleno-amino acid biosynthesis
MC28_4801	PWY-7274	D-cycloserine biosynthesis
MC28_4843	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MC28_4865	PWY-31	canavanine degradation
MC28_4865	PWY-4984	urea cycle
MC28_4865	PWY-6305	putrescine biosynthesis IV
MC28_4865	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
MC28_4868	PWY-6749	CMP-legionaminate biosynthesis I
MC28_4869	PWY-6749	CMP-legionaminate biosynthesis I
MC28_4870	PWY-6749	CMP-legionaminate biosynthesis I
MC28_4881	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_4881	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_4897	PWY-3341	L-proline biosynthesis III
MC28_4897	PWY-4981	L-proline biosynthesis II (from arginine)
MC28_4897	PWY-6344	L-ornithine degradation II (Stickland reaction)
MC28_4934	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_4934	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_4935	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_4935	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_4939	PWY-6012	acyl carrier protein metabolism I
MC28_4939	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
MC28_4941	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
MC28_4957	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
MC28_5002	PWY-6123	inosine-5'-phosphate biosynthesis I
MC28_5002	PWY-7234	inosine-5'-phosphate biosynthesis III
MC28_5004	PWY-6123	inosine-5'-phosphate biosynthesis I
MC28_5004	PWY-6124	inosine-5'-phosphate biosynthesis II
MC28_5004	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MC28_5004	PWY-7234	inosine-5'-phosphate biosynthesis III
MC28_5005	PWY-6123	inosine-5'-phosphate biosynthesis I
MC28_5005	PWY-6124	inosine-5'-phosphate biosynthesis II
MC28_5005	PWY-7234	inosine-5'-phosphate biosynthesis III
MC28_5006	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
MC28_5006	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
MC28_5006	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
MC28_5007	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
MC28_5007	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
MC28_5007	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
MC28_5008	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
MC28_5008	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
MC28_5008	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
MC28_5009	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
MC28_5009	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
MC28_5009	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
MC28_5009	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
MC28_5011	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
MC28_5011	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
MC28_5011	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
MC28_5012	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
MC28_5012	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
MC28_5013	PWY-6123	inosine-5'-phosphate biosynthesis I
MC28_5013	PWY-6124	inosine-5'-phosphate biosynthesis II
MC28_5013	PWY-7234	inosine-5'-phosphate biosynthesis III
MC28_5014	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
MC28_5014	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
MC28_5014	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
MC28_5024	PWY-6853	ethylene biosynthesis II (microbes)
MC28_5035	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
MC28_5037	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
MC28_5037	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
MC28_5037	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
MC28_5048	PWY-6829	tRNA methylation (yeast)
MC28_5048	PWY-7285	methylwyosine biosynthesis
MC28_5048	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
MC28_5061	PWY-6754	<i>S</i>-methyl-5'-thioadenosine degradation I
MC28_5062	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
MC28_5062	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
MC28_5067	PWY-101	photosynthesis light reactions
MC28_5067	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
MC28_5076	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
MC28_5076	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
MC28_5087	PWY-4981	L-proline biosynthesis II (from arginine)
MC28_5088	PWY-4981	L-proline biosynthesis II (from arginine)
MC28_5088	PWY-4984	urea cycle
MC28_5088	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MC28_5093	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_5093	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_5095	PWY-7310	D-glucosaminate degradation
MC28_5099	PWY-6897	thiamin salvage II
MC28_5099	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
MC28_5099	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
MC28_5100	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
MC28_5100	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
MC28_5100	PWY-6897	thiamin salvage II
MC28_5100	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
MC28_5100	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
MC28_5100	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
MC28_5100	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
MC28_5109	PWY-6902	chitin degradation II
MC28_5143	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
MC28_5143	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
MC28_5148	PWY-5392	reductive TCA cycle II
MC28_5148	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
MC28_5148	PWY-5690	TCA cycle II (plants and fungi)
MC28_5148	PWY-5913	TCA cycle VI (obligate autotrophs)
MC28_5148	PWY-6728	methylaspartate cycle
MC28_5148	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MC28_5148	PWY-7254	TCA cycle VII (acetate-producers)
MC28_5148	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
MC28_5226	PWY-7310	D-glucosaminate degradation
MC28_5235	PWY-5480	pyruvate fermentation to ethanol I
MC28_5235	PWY-5485	pyruvate fermentation to acetate IV
MC28_5235	PWY-5493	reductive monocarboxylic acid cycle
MC28_5237	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
MC28_5237	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
MC28_5237	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
MC28_5237	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
MC28_5255	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MC28_5313	PWY-1881	formate oxidation to CO<sub>2</sub>
MC28_5313	PWY-5497	purine nucleobases degradation II (anaerobic)
MC28_5313	PWY-6696	oxalate degradation III
MC28_5323	PWY-5381	pyridine nucleotide cycling (plants)
MC28_5335	PWY-5392	reductive TCA cycle II
MC28_5335	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
MC28_5335	PWY-5690	TCA cycle II (plants and fungi)
MC28_5335	PWY-5913	TCA cycle VI (obligate autotrophs)
MC28_5335	PWY-6728	methylaspartate cycle
MC28_5335	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MC28_5335	PWY-7254	TCA cycle VII (acetate-producers)
MC28_5335	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
MC28_5356	PWY-7310	D-glucosaminate degradation
MC28_5393	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
MC28_5393	PWY-5723	Rubisco shunt
MC28_5403	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
MC28_5404	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MC28_5404	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MC28_5427	PWY-3781	aerobic respiration I (cytochrome c)
MC28_5427	PWY-4521	arsenite oxidation I (respiratory)
MC28_5427	PWY-6692	Fe(II) oxidation
MC28_5427	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
