        dnaA    1662 ..    1687 +  -9.1   -4.7078   ACCTTGTTTTACGCA         CAGTCTATCCA CATG TAGATAGACTG          TTTTTACATCCTTCA  90 64
       dnaN1    2956 ..    2991 +  -6.2  -4.33653   TTACTAGGTAAGGAA    TAAGGGTTGCTAGTTT AAAG ATGCTAGTGGCCCTTA     TTTGATTTTTGGGTA  70 34
 CT43_CH0003    3285 ..    3302 +  -6.3  -4.42062   TTCCAAGTTCAGGCA             TAAAGGG GGAG CCCTTTG              TTTATTTCAGAAATA  74 23
        recF NONE
        gyrB    6399 ..    6422 +  -9.7  -3.39803   ATTTAAATGAGTAAT          GACAGGAAT CTAAGT ATTCCTGTC           TTCTACATATAAATC  80 35
        gyrA    8948 ..    8973 + -14.1  -5.67967   GTTTCTTCTGAAGAA         TAAGAGGGGGG ATTT TCCCCCTCTTA          TTTTTTTATAATAAT 100 45
        guaB   16835 ..   16861 + -12.5  -5.98781   TGTCTTATATACAAA         TAGACAGAGAT TTGAT ATCTCTGTCTA         TTTTTTTTGATTATG 100 41
        dacA   18242 ..   18259 +  -4.8  -6.13503   AGGTTGGTTTTAGAA             GCTCCT CATGGT AGGGGC              TTTTTTTTATTCCTA  95 28
 CT43_CH0010 NONE
 CT43_CH0011   20159 ..   20186 + -17.1  -5.65678   GGCAACGCGGGTTAA        CTCCCGTCCCT TTATAT AGGGACGGGAG         TTTTTTGTGTTTTAT 100 288
        serS   21787 ..   21808 +  -8.8  -5.45802   GTGGAGATTGGAGAA           CTCGTTAC CAACAC GTAACGAG            TTTTTATTTTAAAAC 100 314
 CT43_CH0013   22318 ..   22335 + -12.7  -5.79595   AATTTAATAGGAAAA             CCCGTGC ATAT GCACGGG              TTTTTTATTTTACAA 100 39
 CT43_CH0017   25287 ..   25308 +  -8.8  -5.36441   TATATGTATACAAAA           CTCACCTT AATACA AAGGTGAG            TTTTTTGTATAGAAA 100 391
        dnaX NONE
 CT43_CH0019 NONE
        recR NONE
 CT43_CH0021   28289 ..   28309 +  -3.9  -5.67711   GAACAATGGTAAAGG            GTTCTGCTT TCT GAGCAGGCC            TTTTTATTTTATTTG  81 29
        bofA   28706 ..   28729 +    -9  -5.41143   TTAAGCTTTATATCA          TGCCAAGATA AAAT TATTTTGGCA           TTTTTTTAAAAAGTG 100 15
 CT43_CH0023   34314 ..   34333 +    -5   -5.9218   AAGTATCATATTTTT            AAATAGGC ATAT GCCTATTA             TTTTTTTGTTCTGTA  93 24
 CT43_CH0024 NONE
         tmk NONE
        holB NONE
 CT43_CH0027 NONE
 CT43_CH0028   38655 ..   38684 + -15.3  -5.28176   AAATAAAAAGTGAAA       TTACCTTTCCAAT TATA ATTGGAAAGGTAA        TTTTTTATACATGAA 100 28
 CT43_CH0029 NONE
 CT43_CH0030 NONE
 CT43_CH0031   40589 ..   40624 + -13.6   -2.6621   TCTATCATGTCGATA    AAAAATAAGCTTCTCA TAAT TGAGAAGCTTATTTTG     CTGTTTCGATATAAT 100 18
        metS   43381 ..   43425 + -11.7  -4.79756   AAGTAATTAAGACAA GAAAAGAGATGTTTCACGTGT AAC ATGTGTGAAGCGTCTTTTTTC TTTTTACATTCTCTA 100 35
 CT43_CH0034   44310 ..   44327 +  -4.1  -5.79595   GTGTTGAATAAAAAA             GAATGGG GAAA CCTGTTC              TTTTTTATTTTGAAA  86 30
 CT43_CH0035 NONE
        ksgA   45964 ..   45988 + -17.3  -4.45577   CATAAGAATATGAAA          GGGACAGTTCA ACT TGAACTGTCCC          TTTTGTCACCTTTCT 100 36
 CT43_CH0037   46928 ..   46949 +  -7.3  -5.36441   CATTACGAAGAGTAA           GCAGGGTAC ATAT GTATCTTGC            TTTTTTGTATGGAAG 100 26
 CT43_CH0038   47391 ..   47403 +  -7.7  -3.20028   ACATTTTATGGAGAC                CCTCA TGA TGAGG                TCATTTTATAATCCG  69 2
        sspF   47713 ..   47733 + -13.3  -4.95155   TTCTATGCTACGGTA            GCCGAGGAG ACA TTCCTCGGC            TTTTTGTACTCTAAA 100 53
         ipk   48755 ..   48765 +  -5.4  -3.72242   ACGCTTGAATAAAGA                 CGTA TAA TACG                 TTATGATTTGTTTAG  59 29
        purR   49657 ..   49677 +  -7.6  -6.17669   AGAGGCTGAATAAAA            GGTAGAGC AGATA GCTCTATC            TTTTTTTATTTTATT 100 28
 CT43_CH0042   50202 ..   50216 +  -4.4  -4.59853   CAACTACATTAAAAA               TTTTTA TCT TAAAAA               TTTTTAAAAAATTAA  68 78
       spoVG   50642 ..   50671 + -16.7  -6.28631   CTTATAATTTTGTAG       CAAACTCCTGTAA GCAT TTACAGGAGTTTG        TTTTTTTTTGCTTTA 100 72
        gcaD NONE
 CT43_CH0045 NONE
       spoVC   53903 ..   53915 +  -4.1  -5.08255   GTTAAAAATGAGATT                GGGAA TAT TTCTC                TTTTGTTTTACCCAT  70 36
 CT43_CH0047   54196 ..   54216 +  -5.4  -5.30339   GCAATAAAATGTTGT            CGCTTTGG CATGT CCAAAGCA            TTTTTCTGTTTTCCT  80 34
         mfd NONE
       spoVT   58590 ..   58606 +  -8.7  -5.28481   TGTATATTGAATGAA              GGTAGCG CTT TGCTACC              TTTTTTCGTTGAATA  95 119
 CT43_CH0050 NONE
 CT43_CH0051 NONE
 CT43_CH0052 NONE
        yabP NONE
        yabQ NONE
      divIC1   63469 ..   63481 +  -3.4  -2.64739   TTTCGAAGTAGAGTA                TGTC TTATT GACA                CTATATTTTAGGATT  44 30
 CT43_CH0056   64069 ..   64094 +  -7.5   -5.4251   TTAACATATAGAGAG         GTACCCAGAGT GATG GCTCAGGGTGC          TTTTTTATATGTGAA 100 57
      spoIIE   67127 ..   67144 +  -9.9  -5.60993   ATTTGATTTTAAAAA             CCTAGGT GAAT ACCTAGG              TTTTTTTGTGGGAAA 100 66
        tilS NONE
       hpt_2   69312 ..   69322 +    -4   -3.1207   TTTACAATTGTATAG                 GAAA GTT TTTC                 TATGTTACGATTTAC  48 53
        ftsH   71280 ..   71299 + -12.2  -5.80003   TAAGTAAGAAATGAA            GGAGTGAC TATC GTCACTCC             TTTTTTGTTTGTTAA 100 34
        coaX NONE
        hslO NONE
       cysK1   74233 ..   74252 + -10.8  -5.63236   AATGCGATTGAAAAA            GCATCCTT GAAA AAGGATGC             TTTTTCTTTTTGGAT 100 44
        pabB NONE
        pabA NONE
        pabC NONE
        folP NONE
        folB NONE
        folK NONE
 CT43_CH0070 NONE
 CT43_CH0071   80241 ..   80273 + -13.6  -2.75064   ATTACGTGAAAGAAA      GAAGAACTGCCAGT TAGTT GCTGGCAGTTTTTC      TAGTTGAGTAGAAAA 100 86
        lysS   81842 ..   81863 + -13.1  -5.96894   CATAAACAAGACTAA           GCTTTGGAG ATTT CTCCAAAGC            TTTTTTTATTTGAGT 100 26
 CT43_CH0074   89948 ..   89982 +  -8.1  -3.39842   GTGGCCTAAAAATAA    GAGCCGG-ATTTTT-CT TAG AGTAGAAATTCCGGCTC    ATTTTATATTGAAAT  73 79
        ctsR   96813 ..   96824 +    -3  -2.50935   TATAAATAAATATAA                CTTT TGTA AAAG                 ATTGATAACTAAGAT  42 32
 CT43_CH0076 NONE
 CT43_CH0077 NONE
 CT43_CH0078  101068 ..  101088 + -11.2  -4.30719   GTATAGACAAACAAA            GAGGGCTA CGCGA TAGCCCTC            TTTCTTGTACGAGAA 100 41
        radA NONE
 CT43_CH0080 NONE
 CT43_CH0081 NONE
        ispD  105583 ..  105610 + -16.4  -3.88787   ATGGTGTATAACAAA        GAAAAGCTCGGC AATG GCCGGGCTTTTC         TTTGTAAGGATATCG 100 46
        ispF  106192 ..  106202 +    -4  -3.35934   GATAATCACATTTTT                 TTGT TGT ACAA                 TTATAGAATGTGTAG  49 62
        gltX  107984 ..  108012 + -16.1    -5.626   GAACCGCGCTTATAA        GGCGTCTCTGTCA ATA TGACAGAGGCGTC        TTTTTTTATACCGTA 100 307
        cysE NONE
        cysS NONE
 CT43_CH0087 NONE
 CT43_CH0088 NONE
 CT43_CH0089  111835 ..  111856 +  -7.3  -4.58297   AAATTAAGAAGAGGA           GAGCGTTGA AGCA TTGACGCTC            TTTGTCTTTTTACTG  80 17
        sigH  112587 ..  112608 +    -3  -5.18371   AAATAACAAGTGCAA           CAGGTG TAAAATAAAT CACCTG            TTTTCTTTTGTAGAC  71 42
        rpmG NONE
        secE  113125 ..  113137 +  -6.2  -5.37593   AGAACTGTGTAAAAG                CCCG GTGAA CGGG                TTTTTTCATTTGCGC  88 85
        nusG  113782 ..  113801 +   -10  -5.03747   TCTTTTAAGTCAGTA            CGTCTTCG TTAT CGGAGACG             TTTTTTGAAAGATTT 100 77
        rplK  114344 ..  114374 +  -9.1  -4.35885   TTTGTTTTTAAAAAA      GGTTGCGGGTCTGG AATT CCA-ATTCGCAACC       TTTATTATCGTAAAT  89 46
        rplA  115342 ..  115370 + -11.8  -4.75404   TTCTGTGACTATATG        CCTCCATGTCTA CAAGT TGGGCATGGAGG        TTTTTAGTGCACTTT 100 175
        rplJ  115911 ..  115921 +  -2.4  -3.93166   GCAGAACAAAAGGAA                 GAGC AAG GCGC                 TTAATTTTTTAAAAG  51 11
        rplL  116377 ..  116394 +  -8.4     -6.13   GATGCTTTAAAAAAA             GCTCGC TCTCAT GCGAGC              TTTTTTTTTAACTGT 100 50
 CT43_CH0098  117267 ..  117286 +  -9.4  -4.00038   ATTTATTTGTGATTT            TGCACAAA TTTT TTTGTGCA             TTTATAATACTCATG  86 264
        rpoB NONE
        rpoC NONE
 CT43_CH0101  124869 ..  124909 + -13.6  -4.67048   TAATAAGTTAAAACT GTTTTTGTGAGGAGAGAGC ATTT GCTCT-TCCTTGCAAAAAC  TTTGTTTTCAACTAA 100 30
        rpsL NONE
        rpsG  125965 ..  125981 +    -8  -3.90588   ATGGAAGTGTGGAGA              GGGAGA ATGCC TCTCCC              TTTCGTTGGGCGCTC  77 89
        fusA  128231 ..  128256 +  -6.9  -2.65815   ACTTATGTAAGCTTA         GAAAGTGGGAC GTAA GTTTCGCTTTC          TAGTCTAAATATAAA  59 71
         tuf  129511 ..  129531 + -14.1  -5.67283   GCTGATATAAAAAAA            CCTAAGGGA TTT TCCCTTAGG            TTTTTTGTTTGCGTT 100 46
 CT43_CH0106  129740 ..  129770 +  -4.8  -3.65902   TGCTTGCATCTAGAC       GAATAACATTGTAT AAT AGACAATGTTGGTC       TTTGACTGCGATGAA  58 28
        rpsJ  130195 ..  130205 +  -2.6  -2.53581   ATATCGAAATCAAAC                 TATA AAT TATA                 TAACTTAAAAATGTA  40 21
        rplC NONE
        rplD NONE
        rplW NONE
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP NONE
        rpmC NONE
        rpsQ NONE
        rplN  135442 ..  135457 +  -4.7  -2.64155   TAAAGACAAAGGAAA              CAAGG CGTTAT CCTTG               TGGCTTTCCCAAAGC  50 120
        rplX  135682 ..  135692 +  -2.6  -2.54841   AAAAAATCTGGTGAA                 TTAT TAG ATAA                 ATAATTTTCTTAAGA  40 11
        rplE NONE
        rpsN NONE
        rpsH NONE
        rplF NONE
        rplR NONE
        rpsE  138379 ..  138391 +  -3.4  -2.52464   TTACGCGGTAAATCT                GTAG AAGAG CTAC                TAGGTTAAGGAGGGA  44 5
        rpmD NONE
        rplO  139050 ..  139066 +  -2.3  -2.87501   TTGAAGCAGCTGGCG              GATCA GTTGAGG TGATC              TAATGTTTCGTACAA  41 6
        secY  140368 ..  140404 +  -9.6  -2.78384   GGGTTTATCAAGCAG   TGAGTAAGT-GGGAAGA ACCA TCTTCCCTACATGCTCA    TGTACTGAGGGGGAA  74 23
         adk NONE
        maP1  141852 ..  141863 +    -3  -2.90496   GGATTTCAGAGCAGT                GTAA AATG TTAC                 TGATTTGAAGAAGGG  43 56
        infA NONE
        rpmJ NONE
        rpsM NONE
        rpsK  143172 ..  143208 + -11.7  -2.79518   TGCCTAAGGGGGACT    TTCGGTTAGACAGGGGT TAT ACCTTTGTTTAACCGGG    GTTTCGACGTTTTGA  88 139
        rpoA NONE
        rplQ  144621 ..  144631 +  -2.4  -5.83822   TCTTTTCAAGAAACT                 GGTC ATG GCCC                 TTTTTTTTAAATATA  79 65
        cbiO NONE
        cbiO NONE
 CT43_CH0139 NONE
        truA  147966 ..  147982 +  -4.5  -4.06419   AGAAACTCAAAAGTA              TATCATA ACA TATGGTA              TTGTTTCTAAAACCA  60 67
        rplM NONE
        rpsI  148946 ..  148966 + -15.5  -5.88197   TTTGCGAACTACAAA            CCCCAACCA TTT TGGTTGGGG            TTTTTTTATGTTTCA 100 43
 CT43_CH0143 NONE
        cwlD  150287 ..  150305 +    -6  -5.59564   CACGGAAAAAGGAAA             TCCTCC AGAATAA GGAGGA             TTTTTTTGAGTTTCT  90 13
 CT43_CH0145  151607 ..  151659 + -12.5  -4.53398   CTGTTAATAGCAAGA TAA-AGTAATAACGAGTGGACAAT TTATAC ATTGTCCACTCGTTATTATAGTTA TTATTTTTACTGTTC 100 121
 CT43_CH0147  153092 ..  153122 + -15.6  -4.87665   GGTGTGATTAAAAAA       GCTCTACCACCTTT TTG AAAGGTAGTAGAGC       TTTTTATACGTGAAG 100 83
 CT43_CH0149  154297 ..  154311 +  -5.8  -3.10464   ATGTAAGAAAAAGAA               CTTTTT ATT AAAAAG               TGTTGACGTTAATAG  57 15
 CT43_CH0150  161616 ..  161635 +    -5  -5.97979   ATAGCGTCAGAAAAA            CACTTCTA AATG TAGGGGTG             TTTTTTTATTATTAT  93 17
        rocF  162740 ..  162755 +  -7.6  -5.95539   ATAAATGTAAGAAAA              GCAACT GAGA AGTTGC               TTTTTTTATTTGAAA 100 37
 CT43_CH0152 NONE
 CT43_CH0153 NONE
 CT43_CH0154 NONE
        glmM  166630 ..  166670 + -19.4  -4.37886   GTAATTAGCTGAATT  TATATGAAAAAGGAGCAC AAAAA GTGCTCCTTTTTCATATG  TTTTATAGACGATGA 100 37
        glmS  168964 ..  168994 + -16.4  -4.96848   AAATTTACAAATTTG       TACCCCTTTAGATA TTT TATCTAAAGGGGTG       TTTTTGTGTCGAAAA 100 81
 CT43_CH0157  171183 ..  171196 +  -5.3  -4.32579   AGGTTGAAACGGTCT               TCATC TTGA GATGA                TTTATTATAAAATAT  66 62
 CT43_CH0158  171826 ..  171873 + -17.5  -4.11394   AAAAGTTTAAATTAG GATAAATAAGAAAAAGAGCCT ATACTC AGGCTCTTTTTCTTATTTATA TTTTAAAAGTAAACT 100 31
 CT43_CH0161  175077 ..  175106 + -19.5  -5.34055   TTTAAAAGATAAAAA       GAAGGCATCTCAC TCCA GTGAGATGCCTTC        TTTTTTAATCTTTCT 100 29
 CT43_CH0166  179742 ..  179767 +  -7.6  -5.15167   TAATCACTGTCAAGA         GAGGTACCTG AAAGAA CGGGTATCTC          TTTTTGTTGCTAATA  91 38
 CT43_CH0167 NONE
 CT43_CH0168 NONE
 CT43_CH0169  183561 ..  183579 + -11.8  -5.55698   ATGTGAAAAAGTAAA             GCGATAGA ATT TCTATCGC             TTTTTTTACATTATG 100 27
 CT43_CH0170  184944 ..  184976 + -12.3  -5.77856   AGGCTTAACAAAAAA      GAACTGATTCAAA GGGAATG TTTGAATCAGTTC      TTTTTTTCATTTCTT 100 33
 CT43_CH0172  186192 ..  186213 + -11.7  -5.64873   GCAGAAACGAAAAAA           TAACCTTGC CTGT GCAAGGTTA            TTTTTTCTTCTTGCC 100 23
 CT43_CH0174 NONE
 CT43_CH0175 NONE
 CT43_CH0176 NONE
 CT43_CH0177 NONE
 CT43_CH0178  192131 ..  192170 + -16.8  -4.55004   GATACGCAAAAATTA  AAAAATAAAGAAGTAGGC AACC GCCTACTTCTTTATTTTA   TTTCTCTTTTATATT 100 18
 CT43_CH0180  193019 ..  193068 + -27.1  -4.16251   GTTAAAGTTGCAAAA TAACAAAAGTAAAAAGGTATCCT TCGT AGGATACCTTTTTACTTTTGTTA TTTTGCAACTTCTGT 100 23
 CT43_CH0185  199637 ..  199662 + -14.1  -3.79251   AATTAGAATTAAAAA         CCCCTGAAGTA CATA TGCTTCAGGGG          TTTACTAATAGAATA 100 46
 CT43_CH0187  201336 ..  201349 +  -3.1  -3.21416   GAAGCCGATAACAGT               TGGTG GAAG TACCA                TTGGTAATAAAAATA  47 485
 CT43_CH0190  203406 ..  203430 + -15.1  -5.03994   GAAACAAACTAAAAA          GCTGCTTGTCT ATA AGACGAGCAGC          TTTTTCTATATAAAG 100 29
 CT43_CH0192 NONE
 CT43_CH0193  205950 ..  205973 +  -9.6  -5.03994   AGAAAAAATTAAAAA          GACGACCG GGCATAGA CGGTCGTC           TTTTTCTATATAAAG 100 29
 CT43_CH0194  207044 ..  207081 + -12.9  -3.51406   AATCAAATCAAAAAT   AAGAAAAGACGACCG GGCATAGA CGGTCGTCTTTTCTA    TTACTATTTATAATA 100 24
 CT43_CH0195  208500 ..  208533 + -13.4  -5.45726   TCTACAGTTTAATCG     TAATCCGTTATGTG TATAAT CGCATAACGGATTA      TTTTTTTGAAATATC 100 29
 CT43_CH0196  209945 ..  209968 + -11.8  -5.37865   TAAAGCAAGCTAAAA          GGTGAACGAG TAAA TTCGTTCACC           TTTTTTAATTCTTAC 100 28
 CT43_CH0197  210512 ..  210535 + -11.1  -5.60689   AAGATTAACAAAAAA          GCCTTAGTC CATATA GACTAAGGC           TTTTTTATTATATAA 100 100
 CT43_CH0198  211130 ..  211151 + -11.7  -5.93809   ATATAGATGCTAAAA           CAAGAAAGG AAGT CCTTTCTTG            TTTTTTTTATGGGGG 100 40
 CT43_CH0199  212020 ..  212052 + -13.5  -3.11559   GTTTGATATAGGACA      AAAAACCACCAAGCG TTC CGCTCGGTGGTTTTG      TATTAGGATTCTAAT 100 107
 CT43_CH0201  214470 ..  214496 +  -6.6  -5.64274   ATAAAGGTGTAATAA         AAGAGTAGGTTT TCT ATACCTACTCTG         TTTTTTTATGAATAA 100 18
 CT43_CH0204  218118 ..  218151 +  -9.7  -4.78107   AGTAAAGAGTAGAAA     GCCACTTCCTTTCAGT TTT GTTGGA-GGAAGTGGC     TTTTTCATAATGATA 100 36
 CT43_CH0205  220761 ..  220816 +  -2.2  -3.95214   TTGACCTAAATAATA GAAG-ACGTTTTTTC-ACACAGCAAT GAAATG GTAGCTGTTTTGAAAAAATGTTCTTC TATTTTTAAGTAAAT  50 44
 CT43_CH0206 NONE
 CT43_CH0207 NONE
 CT43_CH0208 NONE
 CT43_CH0209  224702 ..  224726 +   -13  -5.99154   TCATGTATAAAAAAA          GGACTCTTTC AAATG GAAAGAGTCC          TTTTTTTATTTACTA 100 31
 CT43_CH0211 NONE
 CT43_CH0212  226492 ..  226530 +  -9.1  -5.92399   TTCAAAAAAAATAAA   GACTCTAACGTATTAGT AAGCA GTTAATATGTTGGAGTC   TTTTTTATTTTCTTC 100 59
        hppD  228003 ..  228036 + -12.6  -4.38116   AACTTATAAGATTTA     TATCCACCAGCAAA AGTCCC TTTGCTGGTGGAAA      TTTCATTTTTATAAG 100 32
 CT43_CH0214 NONE
 CT43_CH0215  230167 ..  230193 + -14.5  -5.26316   AAATAAGTAAAAAAA         GGCATGCTCTC AATAA GGGAGCATGCC         TTTTTTGTGGAATCG 100 35
 CT43_CH0216  231817 ..  231841 + -10.9  -5.95539   TATAAGCGAAAAAAA          TCCATTCTAAT GCT GTTAGAATGGA          TTTTTTTATTTGAAA 100 36
 CT43_CH0217 NONE
 CT43_CH0218  233361 ..  233373 +  -3.4  -4.83615   ACATTTTATTTCAAA                TAGG AACTA CCTA                TTTTTATAAAAAGTG  66 200
         ddl  234525 ..  234558 + -21.3  -2.87463   ATCTAACAAAAAAAG     GAGGAAGCACTATTC GTAG GAATAGTGCTTCCTC      TATGTAAGGAGCGTT 100 35
        murF  236191 ..  236217 +  -7.4  -5.48825   AGCATTCAGGAAAAG        GGC-TTTTCCG CAAATT CGGAAAACGCC         TTTTTTTAAATGATA 100 261
 CT43_CH0221  237858 ..  237882 + -10.1  -6.04953   AAGCTTAATAAAAAA          GAGAATGCC CTTTGTT GGCATTCTC          TTTTTTTATTTCTGT 100 33
        uvsE  238956 ..  238967 +  -4.4  -3.10056   AGTTAAAATGCCGCC                GGTT ATTA AACC                 TGTTAAATGACTGAT  50 75
        acpS  240047 ..  240060 +  -4.5   -5.0916   GTTTTTAGTTCTTGT               CGGTT TGTT GACCG                TTTTTGTGTTGGCGG  73 148
 CT43_CH0225  241040 ..  241066 +  -9.5  -4.84642   GAAGTAAACTTCTTA         GACGTGGTG ATATATGTG CACCACGTC         TTTTCTTAGTTTGAA 100 34
        dal1  242553 ..  242563 +  -5.4  -3.40611   TCTTTGCAACAGGCT                 CCAT ACA ATGG                 TATTATTACAATAGG  58 260
 CT43_CH0227 NONE
 CT43_CH0228  243283 ..  243304 +  -6.6  -6.17268   AAATCGGCAGTTTAA           GTTGCTCT CTTTGA AGGGCAAC            TTTTTTTTATTATAG 100 39
 CT43_CH0229 NONE
 CT43_CH0230  245518 ..  245535 +    -7    -5.626   AATAGTAAGAGAAGA             GAGCAG ATGAAA CTGCTC              TTTTTTTATAGAATA 100 36
 CT43_CH0231  246592 ..  246604 +  -3.3  -3.88946   GCTAACGCGGTGCGA                GGGTT CGA ATCCC                TTCTTCTCTGCCATA  54 282
 CT43_CH0232 NONE
 CT43_CH0233 NONE
        rimI NONE
 CT43_CH0235  255709 ..  255744 + -13.6  -3.64466   ACCACAGCTTGTGGA    TAAAACCCATATTATC TGTT GATAATGTGGGTTTTG     TTGTGTATATAAAGT 100 56
 CT43_CH0237  258905 ..  258948 + -14.1  -4.63048   TTTTTGAAAAACTAT CCACAATAAAACGCAGAGG AAGCGA CCTCTGCGTTTTATTATTG TTTCTTCTTTGTGAA 100 17
       groES NONE
       groEL  262281 ..  262309 +  -8.2  -5.72118   AGTTAATTAGAAGAA        GGCTACTTCCTT GATGA GAGGAGGTAGTC        TTTTTTATGTTTTTT 100 77
 CT43_CH0242 NONE
 CT43_CH0243 NONE
 CT43_CH0244  264774 ..  264832 + -20.3  -2.73529   GGGTGGGATGATGTA ATT-CTTTTCTAAAAAACATCCATTTCT ATAT AGAAATGGATGTTTTTTAGAAAAGGAAA TGAATTTCTGTAGAA 100 299
        guaA  266721 ..  266751 + -10.7  -5.54338   TATTGTAATAAAAAA      GATCCATCTA-TCA TTCA TGAATAGATGGATC       TTTTTGTTTTCGTTG 100 41
 CT43_CH0246  268435 ..  268461 + -11.7   -5.1615   AGGGGTTTTTTAAAA         GGTCTAGACTT AAGGG GAGTCTAGACC         TTTTTTGCGTCTTCA 100 42
 CT43_CH0247 NONE
 CT43_CH0248  270783 ..  270807 +  -4.4  -5.44837   GCTACATGATAAAAA          GGCTTATTTT AAAAA GAAATAAGTC          TTTTTATATTTTTTT  81 54
 CT43_CH0249  277275 ..  277314 + -10.2  -5.87996   TTGCATTTATATAGA  CGATAATCGGAGGGATAA TAGT TAATCCTTTTGATTATCG   TTTTTTTGTTAATTA 100 50
 CT43_CH0250  278198 ..  278225 + -16.4  -3.61239   TTTTATGGTAGAAGA        GCACCCCATAGA TTGT TCTGTGGGGTGC         TTGTATATAACTATA 100 42
 CT43_CH0252 NONE
        dnaI  286175 ..  286195 +  -2.7  -3.76186   CTATCGAATTAAAGA            TCATTTT AGCAAAG AAAATGA            TTGATTTTGTACATG  48 1
 CT43_CH0258  290893 ..  290948 + -14.4  -3.36691   AGTTCTTATATAGTA AAAAATAATAAACCACACTCTACTTG TATT TAAGCAGAGCGTGGTTTATTATTTTA CTTCTTTTTCTATTA 100 18
 CT43_CH0261  300369 ..  300390 +  -8.1  -5.63517   TTGAAATGTTAAAAA           GATACCTTA TATA TGAGGTATC            TTTTTTATTTAGCAA 100 59
        purE NONE
        purK NONE
      purB_2  310287 ..  310314 + -12.9  -4.06419   GCGTAAAATTTCATA        TGGCACAGAAT AGAGTC ATTCTGTGCCA         TTCTTTATAAAAACA 100 35
        purC NONE
 CT43_CH0268 NONE
        purQ NONE
        purL NONE
        purF  315630 ..  315655 +  -6.1  -2.99438   AGAAAAGTGAAAAAA         GCTTCTACTTC TTTT GCTGTAGAAGC          TAGCTTTTTTCTTAA  59 40
        purM NONE
        purN NONE
        purH  319106 ..  319132 + -14.6  -3.07858   ATTGATATGAAAAAG         CAAACTAGGAGC ATA GCTTCTAGTTTG         TACTTATTTAATTAT 100 226
        purD  320425 ..  320446 + -11.7  -5.60993   GGCATGAGATTACGC           GAAGCTAAC ATAT GTTAGCTTC            TTTTTTTATAGGAAA 100 18
 CT43_CH0277  322671 ..  322696 + -15.5  -4.26202   TGCTTTGTATAAAAA         CAGCCCGCTGA AAAT TCAGTGGGCTG          TTTGTTCATGCATCT 100 15
 CT43_CH0281 NONE
        pcrA NONE
        ligA NONE
 CT43_CH0284  330816 ..  330836 + -11.2   -5.9218   AGATTAAATATGAAG            GCTGTTCC TCTAT GGAACAGC            TTTTTTTCTTATGTA 100 34
 CT43_CH0285  331672 ..  331697 +  -7.7  -6.19302   TATACTCATATTTTG         TAGATTCATAC GCAT GTATGAATCTC          TTTTTTTTATTATAT 100 23
 CT43_CH0286  333388 ..  333416 + -20.5  -4.19238   ATAAGAAATAGTAGA        GGAGCTCTTCACA AAA TGTGAAGAGCTCC        TTTTAAAATTGAAAC 100 37
 CT43_CH0288  335720 ..  335732 +  -6.9  -3.25729   CATACTAGATGCGAC                GGGGG ATA CCCTC                TTAATGGTAATTGTA  63 62
 CT43_CH0289 NONE
 CT43_CH0290  337357 ..  337376 + -12.2  -5.64274   TTAAGTAGAGTAATG            GACCAGGA GTTT TCCTGGTC             TTTTTTTATGAATGA 100 168
 CT43_CH0294  340315 ..  340332 +  -9.9  -5.71712   AGAGTAAATTGTAAA             GAAAGGC ATTT GCCTTTC              TTTTTTTATGTAAAA 100 34
        gatC NONE
        gatA NONE
        gatB  343680 ..  343707 + -13.6  -2.56596   TTTAAAGATTAAGCA        GAAAAACACCCG TACA TGGGTGTTTTTC         TAGGTTAATCAAACG 100 52
 CT43_CH0298  345105 ..  345125 +  -9.7  -5.46129   TCCTGAACATCAAGA            GGATGCCCT GTA AAGGCATCC            TTTTTTACTTTGTTA 100 13
 CT43_CH0299  346011 ..  346049 + -19.3  -5.28176   AATGTGTAAGGAAAA   TAAGTCTATAAAGACTC TTAAT GAGTCTTTATAGACTTA   TTTTTTATGCCTGGA 100 32
        gabT  347499 ..  347517 +    -3  -2.71712   GCAAGCTTGTTATGA             GCAAACGA ACA TCGCTCGC             GTTTAAAAACGGAAG  42 1
 CT43_CH0301 NONE
        gabD  350457 ..  350498 +  -2.5  -2.76589   GGACTATAAGTAGTA TACTAGAATCTCTAT AAGGTAACAGAG AAGGAGATTCTAGTA  TGGTATATTGGCTAT  40 32
 CT43_CH0303  350824 ..  350845 +  -8.1  -5.59879   ATCGGCATCATGAAA           GCTATCTTT TGTA GAAGATAGC            TTTTTTCTATTTGTG 100 28
 CT43_CH0304  351450 ..  351470 + -12.7  -4.59944   CAAATAAATAAAAAA            CACATTGGA TTA TCCAATGTG            TTTCTTTATGGTAAT 100 30
 CT43_CH0308  355177 ..  355202 + -10.6   -5.4833   AAAGAATCAAAAAAA         TCACCTTACT CGTTAA AGTAAGGTGA          TTTTTTATTAAATAA 100 39
 CT43_CH0310  358216 ..  358248 +  -5.6  -4.98531   TAGTATAATAGGAAA      GCAGTTGATATAGG GGAAA TCTATACCACCTGC      TTTTTGGTTTACAAA  76 33
 CT43_CH0311  359422 ..  359464 + -11.7  -4.49337   ATAAGCGTAGAGCTG GAAAAGAACAGTGTATTTGA GAAA TCAAA-GCACTGTTTTTTTC TTTTAGTTAATGTTA 100 88
 CT43_CH0312  360257 ..  360280 +  -6.8  -5.72622   ATGATATAATAGGTA          GAGTAGGA CGTTCGTA TCCTACTC           TTTTTTATTTGTAAA 100 61
 CT43_CH0313  361192 ..  361235 +  -9.7  -2.96711   AGGATTGTTCAACAA ATCGAAAAGAGAAGAGGTC ACAGCA GACATCTCCTCTTTTCGAG TATATAGATTATCGC  75 193
 CT43_CH0316  364689 ..  364706 +  -6.3  -3.61398   GTAGTCCTTTTTCTG             TGTATGC ATTT GCGTACA              TTCTTGAAGGGACAA  61 286
        amhX  367238 ..  367257 +   -10  -5.67063   GAAAGTGTTAGAAGA            CAGGGGCT AGAG AGCTCCTG             TTTTTTTGTCGTGAA 100 16
 CT43_CH0319 NONE
 CT43_CH0320  368848 ..  368873 + -19.1   -5.5604   AAATATAATAAAAAA         GACGCGCTACC AATA GGTAGCGCGTC          TTTTTTATTAGTTAC 100 33
 CT43_CH0323 NONE
 CT43_CH0324 NONE
 CT43_CH0325  374561 ..  374607 +  -9.5  -5.00616   GGGCAGCAGTAGAAT GAAACAAAGACACCCTCAAGA AAAGA TCTTGAGGGTGTCTTTTACGC TTTTTTAAGCAACAA 100 29
 CT43_CH0329  379014 ..  379060 + -13.9  -4.51363   TAAGGAACAAGTATA CCCCCACATACTTCTCT-ATTC AAAT GGATGAGAGATGTACGTGGGGG TTTTCCTGTTTACTA 100 41
 CT43_CH0331  380000 ..  380039 +  -8.1  -5.63517   TTAAACTATGGAAAA  TCCCTTATGAAGATATG CAGAAA TGTATATTCATAAGGGA   TTTTTTGTTTGAAGA 100 37
 CT43_CH0332 NONE
 CT43_CH0333 NONE
 CT43_CH0334  382046 ..  382086 +  -9.3  -4.00914   TAGATTAGTTGGAAG GGCT-GACTTTTTCTTTT ATATGC AGAAGAAAAGGTCGAGCC  TATTTGTTTTAGTTT  85 38
 CT43_CH0335  383552 ..  383571 +   -10  -4.11664   AAGTTGTTACCAAAA            GGAAGGGG AGAT CTCCTTCC             TTTCATTATTATAAG  90 39
 CT43_CH0336  385080 ..  385095 +  -6.8  -5.36441   TGAAAAGATAAGAAG              GGGTGC ACAC GCATCC               TTTTTTCTATGCAGA  93 203
 CT43_CH0337  385499 ..  385522 +  -9.6  -5.95166   ATAGAAAATATAGAA          GCAAAGACCA ATAG TGGCCTTTGC           TTTTTTTTAATTCCG 100 12
 CT43_CH0339  387751 ..  387770 +  -7.9  -5.60864   AGACGTTTCATTAGG            CTGTCAG TAATTT CTGACAG             TTTTTTTGGTATGTA 100 39
 CT43_CH0340  388621 ..  388642 +  -5.1  -5.54907   GAAGCATATGAAAAA           GAGCACAAG TAAG TTTGTGCCC            TTTTTATTTTGTAGG  85 14
 CT43_CH0343  393293 ..  393350 + -21.2  -4.44151   TCAGTAAAAATAGAT GTAT-TTTATAGCAAAAAAGCAAGCTC TTAGT GAGCTTGCTTTTTTGCTATAAAGAAAC TTCTTTCTTGTTTTT 100 34
 CT43_CH0345  395408 ..  395421 +  -5.3  -5.44638   GTTTTTTAGTTGCTT               TGAAC GAAA GTTCA                TTTTATTTTTGTTCT  84 109
 CT43_CH0348  398955 ..  398979 +    -8  -5.74086   ATTTTCAATGTAAAA         G-GAAGAACAG AATG CTGTTCTTCTC          TTTTTTATTTAGTTT 100 28
      argR_2  399558 ..  399586 + -14.9  -5.30616   ATTTAGATGCAAAAA        TCCTGTTTTTAAT AAA ATTAAAAACAGGA        TTTTTGTTTAAATAC 100 35
        arcA NONE
      argF_2  402072 ..  402111 + -16.8  -2.91322   TACTTTAGGAAACAT  GGAGTAAAGAAGAAAGGGA GTC TTCCTTTCTTCTTT-CTCC  TCCTTTAGACACTAT 100 19
 CT43_CH0352 NONE
        arcC  404612 ..  404665 + -10.9  -5.33785   ATTATGTACGCTACT TAATAGTAAA-AAAAAGAATGAGGTT AAT AACTTCATTCTTTTTATTTATTAATA TTTTTTGTACTCATT 100 44
 CT43_CH0354  405529 ..  405552 +  -7.6   -5.1925   ATGTATATTAATAAG          GTTCTTTATA TATT TATAAGGAAC           TTTTTTACGTTATCC  91 69
 CT43_CH0355  406389 ..  406426 +  -7.9  -5.84432   GAAAATCAACTTGAA   TCATCCAACATACTG CGAGGTAA CGGTATATTGGATGA    TTTTTTTATGTTATC 100 89
 CT43_CH0357  409701 ..  409717 + -10.9  -5.60993   TTCATAATAAAAAAG              GATGCTC TTT GAGCATC              TTTTTTTATGAAAAA 100 34
 CT43_CH0358 NONE
 CT43_CH0359  412340 ..  412367 +  -7.1  -5.76949   ATATAATAGAAGAAA        TCCTCACAG AGAATAAAAG CTGTGAGGA         TTTTTTTTAGGAATA 100 35
 CT43_CH0360  415490 ..  415545 + -14.4  -3.54105   AAGGAAGTAAAATCA TTCATTAAAATAAAAGGTTCCTACCG ATAG TGGTAGGAACCTTTTTGTTTAATCAA ATTTTAATTTTTTTA 100 18
        thiM NONE
        thiE  419702 ..  419731 + -11.6  -5.27335   CGTTTGATTAAAAAA       GCACAAACCTTT TTAAAT AAGGGTTTGTGC        TTTTTCTTTAAAACA 100 104
 CT43_CH0365  423383 ..  423400 +  -9.9  -4.52143   ATAAGGGATGAAAAA             GGTGTGA ATTT TCACACC              TTTATTATATTTAAG  93 112
 CT43_CH0366  427203 ..  427227 + -17.3  -5.16681   ATAACTTGCATACAA          GGCTTTCCTAC GCA GTAGGAAAGCC          TTTTCTTATTTTTGA 100 213
 CT43_CH0367 NONE
 CT43_CH0368 NONE
 CT43_CH0369 NONE
 CT43_CH0370  430083 ..  430121 + -11.2  -5.45726   GAAAAAATAGAAAAA   GCCTTTTAACAGTTTTTA GTA TAATTACTGTTAAGAGGC   TTTTTTTAGAATATG 100 31
 CT43_CH0371  432015 ..  432058 +   -20  -2.74756   GCTGAACAATATGAA TAAAGAAAAGGCATTAGCTT TTAT GAGCTAATGCCTTTTCTTTG TGATTAACATGATTT 100 23
 CT43_CH0373 NONE
 CT43_CH0374 NONE
 CT43_CH0375  435822 ..  435840 +  -6.7  -4.85782   GGTGATTGATGAAAA             TGCGCCT TATAT AGGCGTA             TTTCTTTTTAAACAA  83 32
 CT43_CH0376  436098 ..  436113 +  -4.7  -5.10877   AAATAAGGAATATAG              CCTCT TGCGAT AGAGG               TTTTTGATTTGTTAT  75 39
 CT43_CH0377  436735 ..  436758 +    -6  -4.63218   TTGTTAAAAGGAATG          GCAGCTGAAT AATA AGTCAGTTGC           TTTTCTTACAAAAAA  74 14
 CT43_CH0378  438053 ..  438070 + -11.3  -5.27335   AAATAACTATTGTAA             GGGAGCA AAAT TGCTCCC              TTTTTCTTTGAGGAA 100 35
 CT43_CH0379  438385 ..  438420 +   -15  -3.42768   GCACCGTTAAAAATA    AAAAAGATCCTCTTCT TATG AGAAGAGGATCTTTTC     TTATAGCGTTTTAGT 100 59
 CT43_CH0382  441860 ..  441886 + -10.9  -5.65678   GGTAACGCCGGCAAA        GCTCG-GTCCCT ATTT AGGGACGCGGGC         TTTTTTGTATTTTCT 100 312
       proS1  443376 ..  443413 +  -9.2   -5.1417   GATAGGTGATAAAAA   GGACTTTGGGCTGCAT AATAAA ATGCAATCCAAAGCCC    TTTTTGGTTTTATAC  95 50
 CT43_CH0385  445512 ..  445528 +  -5.9  -3.00946   GAGAAGAATACAATA              TTTTCCG ATT TGGAAAA              TGCTTTGTAGAAAGG  57 112
 CT43_CH0386  446125 ..  446139 +  -2.8  -2.61582   AAGATAAAAACTTAA               GTGAGA TTG TATCAC               GTTATCAATAAAATA  40 0
 CT43_CH0387  446771 ..  446809 +  -9.8  -4.59773   AATAGATTTGATTTA   TATATCCATCGGTGAA ATGCGTG TATACCGATGGATATA   TTTTTAAAGATAAAA  93 39
 CT43_CH0388  447425 ..  447443 + -11.8  -5.49809   TTGGATGCATAGAAA             GGAAACGA TAT TCGTTTCC             TTTTTTTGACCTTTC 100 29
 CT43_CH0389  448292 ..  448318 +  -2.3  -5.24129   AATAAATAATTGAAA        TGGGTTTGCTCGT TTT GCGAGC-G-CCCA        TTTTTTATAACCAAA  68 32
 CT43_CH0390  450003 ..  450016 +  -3.8  -3.49419   TCACAAACAATAAAA               GGAC TATTTC GTCC                ATTTTTATAAGGAAA  51 2
 CT43_CH0391  451123 ..  451172 + -17.5  -3.17054   AAAAAGAATTACAAG GATAAATGAAAAGGCAATGAGGA ATAT TCCTCATTGCCTTTTAGTTTCTC TTCACTAATTTAATA 100 21
 CT43_CH0394 NONE
 CT43_CH0395 NONE
        yihY  456491 ..  456512 + -10.9  -5.00851   TATCACTAAAAAAAA           CGGGT-CCTC TAT GAGGGACCCG           TTTTATTTGCTTCCT 100 189
 CT43_CH0398  459686 ..  459705 +  -9.4  -5.60993   AAAGCGATTACAATG            GAAGAACA GTAC TGTTCTTC             TTTTTTTATAGAAAA 100 49
 CT43_CH0399  460467 ..  460506 + -18.3   -5.4148   GTGGGATTATAAAAA  GATACTCTCAAAATAGT GAATAG ACTATTTTGAGAGTATC   TTTTTTGCTTGTTTA 100 29
      lepB_3  461200 ..  461223 + -10.4   -5.7946   TAATAAAGTAAAAAA          CCAAGCAAAT TTTA GTTTGCTTGG           TTTTTTTGTTAAACA 100 30
 CT43_CH0402  465069 ..  465081 +  -9.1  -5.47218   AAAGAAAAAGAAAAA                CCGCT AAT AGCGG                TTTTTTTAGCTGAAA 100 19
         cax NONE
 CT43_CH0407  468566 ..  468585 + -12.2  -5.69473   AATAACGTAAAAAAA            CGTCAGCT TATA AGCTGACG             TTTTTTTATAATGTA 100 36
 CT43_CH0409  470126 ..  470150 +  -9.3   -4.9725   ATAATATATTAAAAA          GGCTGCCAATT CCA ATTTGGTAGCC          TTTTTCTGTGCGGAT  95 37
        fumA  471849 ..  471873 + -15.9  -5.25893   TTAAATAAACAAAAA          TGCATCTCGAA TCT TTCGAGATGCA          TTTTTTGGTATATAT 100 33
        pdaA  472744 ..  472765 + -13.1  -4.49981   GTAAAAGGCAATCAA           CCGTAAGCA TGTA TGCTTACGG            TTTTCTCATGCTATA 100 20
 CT43_CH0412 NONE
 CT43_CH0413  475073 ..  475097 + -14.5  -4.52589   AGTAAAGTTTATTAA          TATTCCCTCAT GGT ATGAGGGAATA          TTTTCTATGAAGGAG 100 36
       truA2  475872 ..  475889 +  -7.7  -5.63374   TGGCAAATAAAAAAA             TCGGGCT AAGT AGCTCGA              TTTTTTTAGTATTAC 100 41
 CT43_CH0417 NONE
 CT43_CH0418  479682 ..  479707 +  -4.8  -5.61596   ATAGTGATTAATTAG         GAGACTGT AAAATTGTAA ACAGTCTC          TTTTTTTGTGAAAAT  85 40
 CT43_CH0419  481053 ..  481078 + -11.3  -5.15634   ATTTGTATAGTAAAA         TCGTACGAGTA TGTA TACTTGTACGA          TTTTTTAGTGAACTA 100 41
 CT43_CH0421  482625 ..  482647 +  -4.9  -4.65838   CTTAATAAATAAAAA           GCACCTA CATACTACA TAGGTGC           TTTTTAGCGTATGTC  69 118
 CT43_CH0424  485935 ..  485983 + -15.8  -5.45652   TAAATAATGAGATAA GAGGATGTCC-C-AAAAGATTGAT AAC ATCAATTTTTTAGAGGACATCCTC TTTTTTGTTAACAAT 100 38
 CT43_CH0425  487426 ..  487441 +  -7.6  -6.09133   TTGAAGTGTAAGAAA              CTATCC TTTT GGATAG               TTTTTTTTTGCCCTG 100 30
 CT43_CH0426 NONE
 CT43_CH0427 NONE
 CT43_CH0428 NONE
 CT43_CH0429 NONE
 CT43_CH0430 NONE
 CT43_CH0431  493486 ..  493524 + -13.5  -3.22102   GATGTTTTATAGAAG   TAACAAAAAAGTGTACA ACATG TGTACACTTTTTTGTTC   TGTTATAAAAACTAT 100 29
         pfl  496083 ..  496118 +  -8.3  -3.40597   ATGTAAATGAAAAAA    GTGTCCCTTCGCTTT TAATAC ATAGCGAAGGGAGGC     TGTTTCAATAAAGGA  73 35
        pflA  496869 ..  496893 + -12.3  -5.13137   CATATTTTACAAGCG          GTCTAATCCAA ATA TTGGATTAGGC          TTTTTGCTTTCTTTA 100 20
 CT43_CH0434  498717 ..  498744 + -18.6   -4.9445   TGTCCACAGCAAAAA        GACCCCTTATGC ATAA GCATAAGGGGTC         TTTTTGCTTACTTCT 100 288
        recX NONE
 CT43_CH0440  503256 ..  503278 +  -9.2  -4.51363   CAAGAAAAATAAAAA           CCAGAGAG CACATAT CTCTCTGG           TTTTCATCTTTGGTA  89 29
 CT43_CH0442  504061 ..  504074 +  -8.1  -5.58454   AAACATTAAAAAAAA               GCGAC TTGA GTCGC                TTTTTTTAATGTGGA 100 32
        mutY  506316 ..  506337 + -10.2   -5.1861   GCAATAAACAAAAAA           GTGTTCCC TAAATT GGGAACAC            TTTTTTAATCGTAAG 100 34
 CT43_CH0446 NONE
 CT43_CH0447 NONE
 CT43_CH0448  507449 ..  507469 +  -2.5  -5.10767   GCCTTCAGGTGAAAA            GTCCTTC AAATAGA GAGGGGC            TTTTTCTATTACATG  66 52
 CT43_CH0449  508220 ..  508250 + -16.2  -2.73875   GTACAGAAATTAAAG       CAAACCTGCAGGGG GCT TCCCGGCAGGTTTG       TCCTATTAGAGGGGG 100 28
 CT43_CH0450  510016 ..  510041 +   -12  -5.85737   AACATATAACAGAAA         CAGCTCCTTT AGCATA AAAGGAGCTG          TTTTTTTATTCGTCT 100 9
 CT43_CH0454 NONE
 CT43_CH0455 NONE
 CT43_CH0456  520174 ..  520215 +   -14  -3.36175   TTCTAAGGGATAAAT CA-GTCCTCCACCTCAT ACATATAAA ATGAGGTGGAGGACATG TTATGGGGATTTATT 100 59
         bcP  521229 ..  521245 +  -8.7  -5.43414   ATGATAGTATTCCAA              GTGCGAT TAT GTCGCAC              TTTTTTCTATGTAAT 100 137
 CT43_CH0459  521853 ..  521894 + -23.4  -3.50447   AGGCGTAATATATAA TAAAGAAAGAGGCTGACG GCTATA CGTCAGCCTCTTTCTTTA  TTATATAAGGATTAG 100 33
 CT43_CH0460  522466 ..  522487 +    -6  -4.77157   TAAAACAATTAAAAA           GTTGATTT CTTAAT AAATCAAC            TTTTTAATGAGTTGA  78 56
 CT43_CH0463  531239 ..  531265 + -15.2  -5.63504   AGTAATACGATGAAA         GCCCCTTTTCGT TTA ACGAATAGGGGC         TTTTTTTATGAAGTT 100 36
 CT43_CH0464  531844 ..  531879 +  -9.3  -5.40625   AGATTGTAAAGAAAA    GAGTAGCTGATTTGAG ATACA TTCAAATCA-CTACTC    TTTTTTGTATACTGT 100 32
 CT43_CH0465  533100 ..  533121 +  -9.5  -5.47821   AGCAGTAAGTTAAGA           GAAGTTCCT AAAG AGGAGCTTC            TTTTTTTGAATAAAT 100 28
 CT43_CH0466  533923 ..  533960 + -13.7  -5.09225   GGCCATTGATAAAGA   ATTGAAAAAGTGATGAG GTCT CTCATCACTTTTTCGAC    TTTTTTCGATAAAAT 100 13
 CT43_CH0467 NONE
 CT43_CH0468 NONE
 CT43_CH0469  536951 ..  536966 + -10.4  -5.94713   AATCGTTTATTAAAA              GTCGCC ATAT GGCGAC               TTTTTTTTATAAAAT 100 28
 CT43_CH0470  539158 ..  539178 + -12.7   -5.4251   TAATGCATAAAAAAA            TGATGTGCT AAA AGCACATCA            TTTTTTATGTGTACC 100 38
 CT43_CH0471  541447 ..  541475 +  -5.3  -4.78237   AGTTTGATAACAAAA        CGCTGTCTC TTGTATTTTGC GGGACAGCG        TTTTATTATCCGGTC  74 39
        yhbH  543059 ..  543079 +  -6.9  -5.63504   GGTGAGAAAATGGCA            TAACCTCTT GTA AAGAGGTTC            TTTTTTTGTAAACTT 100 23
 CT43_CH0473  546280 ..  546326 +  -5.5  -5.00616   ATGAGTTTTTGAGAA GACATTATCAT-GGCG-ATTTCA TTT TGAAATATGCTTATGGTGATGTC TTTTTTAGAAGGAGA  76 77
 CT43_CH0474  547247 ..  547292 +   -18  -3.37531   ACTATATAATAGAGT GAAAACCCATTCGTATGAAA ATTATA TTTCATACGAATGGGTTTTA TTAATCTACTTTTCC 100 24
 CT43_CH0476  552171 ..  552185 +   -10  -4.87133   TGTTCTTTTTTAGAG               GCCTGT CTT ACAGGC               TTTTATTTAAAAGGT 100 152
 CT43_CH0477 NONE
 CT43_CH0478  554433 ..  554463 + -12.8  -2.67705   ATAGTAAGGTGGAAA       GAACCTCTAGTA AGTGAAA TACTAGAGGTTC       TCCTATGAATTATAA  95 37
 CT43_CH0479  556661 ..  556689 +  -8.3  -5.61596   ATAATAAACTGTTAA        GAAACGAAGTA GTACTTA TGCTTCGTTTC        TTTTTTTATGAAGAT 100 40
 CT43_CH0480 NONE
 CT43_CH0481  559101 ..  559127 +  -7.4  -5.52909   CTTCATAATAAAAAA         CAGTAGAGGA TTTTATT TCTTCTACTG         TTTTTTTGCATCTTA 100 33
 CT43_CH0483  560959 ..  560982 +  -9.7  -5.99154   TTGTGAGTGATGAGA          GATGTGTAG AAATAA CTACACATC           TTTTTTTGTTTCCTA 100 31
 CT43_CH0484  561590 ..  561629 + -19.8  -3.16564   CATGGTGGACATCAT  TAATAGAAAAAGACAACT ATGT AGTTGTCTTTTTCTATTA   TTACTCAGGTGCAAA 100 23
 CT43_CH0485 NONE
 CT43_CH0486  563781 ..  563794 +  -3.1  -2.76322   TTACATATAATGTGC               CACTT TCTT AGGTG                TGCTCTATTCCCTAG  42 226
 CT43_CH0487 NONE
 CT43_CH0488 NONE
 CT43_CH0489  566470 ..  566480 +    -4  -2.77344   GCTGAGAGAAAGGTG                 CATT ATA AATG                 ATTGTTAAACAGTGG  46 14
 CT43_CH0490 NONE
 CT43_CH0491  568700 ..  568732 + -20.1  -3.86346   GAGTCAAAAATAAGA      GAAAGCCGTATCCTT AAA AGGGATACGGCTTTC      TTTATAGGGAGATAA 100 28
 CT43_CH0492  569852 ..  569885 + -13.5  -5.46657   ATATGTAATAAAAAA     TTGAAAGAGATAAGA GGAA TCTTATTTCTTTCAA      TTTTTTATTAAGCTA 100 22
 CT43_CH0493  570727 ..  570756 +  -2.1    -3.727   AAGAACAATGAAAAA       CGGAAGTATGTTT CAAA AAACACGCATTCG        TTTGACTATAGTGAA  47 30
 CT43_CH0494  571977 ..  572002 + -12.7  -5.44119   GAATATAAGTAAGAA         GACGATCTTGT TTTT ACAAGGTCGTC          TTTTTTTAAGATAAA 100 33
 CT43_CH0495 NONE
 CT43_CH0496  573883 ..  573921 + -19.3  -4.98255   GAAGCTGTTAAGAAA   TAAGAGAACTTTAGCAT ATATA ATGCTAAAGTTCTCTTA   TTTTTATGATTAAAA 100 123
 CT43_CH0497  576061 ..  576092 + -11.8   -5.0916   TATAATAATAGCAGA      TAAGTAAGGTGAAA ATAA TATCACCTTACTTA       TTTTTCTATTCAGCA 100 36
 CT43_CH0498 NONE
 CT43_CH0499  578432 ..  578462 + -18.6  -5.63103   AAAATAGAGTTTTAC       GTATAAGCGACTTA GTA TAAGTCGCTTATAC       TTTTTTTAATTACAA 100 20
 CT43_CH0500  579915 ..  579938 + -12.6  -3.36492   TTCATGATCAAACAA          GCTAGCTATA TTCA TATAGCTAGC           TTGTCAAATTAAGGG  90 34
 CT43_CH0501  581175 ..  581195 + -15.5   -5.0538   TATTAATAGCGAAAA            GCAGTGCCT AAA AGGCACTGC            TTTTTTGAGATAAGA 100 35
 CT43_CH0504  584622 ..  584642 +  -6.9  -5.74288   CAAGAAAGTAAAAAA            CATCCTC CAAACAT GAGGATG            TTTTTTATTATTTAT 100 30
 CT43_CH0508  587964 ..  587991 + -17.2  -5.37865   TATAATATAAAAAAA        GCTGATTGCTTC TTAA GAAGCAATCAGC         TTTTTTCATTGTTAG 100 36
 CT43_CH0512 NONE
 CT43_CH0513  593621 ..  593641 +  -6.9  -5.35354   AGAATAAATGAAAAA            GTGATGG GAAGTAG CCATCAC            TTTTTTCATTATATG  93 39
 CT43_CH0514  595621 ..  595647 + -16.7  -5.60993   TATTTATAAGTTACC         CAGCTGCTAGC TAAAT GCTAGCAGCTG         TTTTTTTGTGAAAAG 100 12
        ald1  597188 ..  597214 + -12.4  -3.71848   AATACAACATGATAA         GAGCTAAGAGAT AAT ACCTCTTAGCTC         TTCTTAGTAAAAGGG  95 77
 CT43_CH0516  598675 ..  598703 + -11.8  -5.62288   ATATAAACACAGTAA       GCCTTGTGCGTCT AGGG AG-CGCGCAAGGC        TTTTTCTTTTGTTGA 100 45
 CT43_CH0517 NONE
 CT43_CH0518  601731 ..  601777 + -16.2  -3.40139   GTATTACGAGTGAAA GATTTATAAAAAAGAGGACGCA ACC TGCGTCCTCTTTTTTATTAGTG ATTTTGTTGAAATTG 100 17
 CT43_CH0520 NONE
 CT43_CH0521  605018 ..  605037 + -12.2  -5.18561   AATTTATAATCTCCA            CCCTTTCC AATC GGAAAGGG             TTTTTTCAATATTTG 100 32
 CT43_CH0522  606916 ..  606943 + -15.8  -5.68039   AAAATACTTCAAAAA        TAAAGAAGGAGC ATAG GCTCCTTCTTTA         TTTTTTTCTCCATTT 100 64
 CT43_CH0524 NONE
 CT43_CH0525  608676 ..  608722 + -17.1  -3.24381   CTTTTTTACTATTAC T-GCA-AAAGAAAAAGGCGTGAT TAA ATCACGCCTTTTTCTTTATGCTA TTCGGTTGATATTAT 100 6
 CT43_CH0529  613170 ..  613199 +    -3  -2.97709   CTTTTTAAAAGGAGG       TGTAACTTTAGCT AAGAA AGCTAAAGG-ACA       TATGTGGATATTTTA  43 101
 CT43_CH0530  614549 ..  614567 +  -3.1  -2.94416   GAAAAATAAATGTTT             GCGCTTT CAAAA AAGGTGC             TATATAGTGAAGGTG  43 73
        aspA  616113 ..  616144 + -14.6  -4.59511   AAAAAATGTAATGTG      AAAAACACCGATCC ATTT GGATCGGTGTTTTA       TTTTTAAAAGATATT 100 30
 CT43_CH0533  618896 ..  618914 +    -6  -6.02919   AATATTATGGAAAAA             GACGTGTG GAA TATACGTC             TTTTTTTATTTGTCA 100 47
        sspH  619253 ..  619276 +   -14  -5.30348   AGAAATAATAAAAAA          GACGCTTCTA ATTT TAGAAGCGTC           TTTTTGTTATTCCAT 100 33
 CT43_CH0537 NONE
 CT43_CH0538 NONE
 CT43_CH0539  625053 ..  625069 +  -6.6  -6.25578   AATGAGATAAAAAAA              CGATGA GTGAG TCATCG              TTTTTTTTATTTGGT 100 31
 CT43_CH0541 NONE
 CT43_CH0542  628224 ..  628253 + -15.9  -2.53903   GTGATGAATTAATAG       GAAGAGTCGATTC TTAG GAATCGGCTCTTC        ATCATTTTTGGAGGG 100 40
 CT43_CH0543  628718 ..  628733 + -10.4  -3.95375   TTGAACGAAAAAACA              GGAGCC ACAA GGCTCC               TATTTTCTATTCAAT  89 41
 CT43_CH0547  633719 ..  633771 + -19.8  -4.56367   TATCAGCAAATACCA TATTCGTATTAAACTAAAAAAGAGG CTAT CCTCTTTTTTAGTTTAATACGG-TA TTTATTTATAAAATA 100 14
 CT43_CH0548  635922 ..  635940 +  -8.9   -4.5123   ATTTTTAATAAAAAA             GAGAAGC CAGCA GCTTCTC             TTTATTTAATCCGTT  89 33
        treR  638508 ..  638535 +   -10  -5.60993   CACGCAGGAAGTAAA        GAGGTGGAACAA AATA TTGTTTCATCTC         TTTTTTTATAAAAAA 100 27
        treB NONE
        treC  641747 ..  641783 + -19.8  -4.07687   TATCGATATACGAAA    TAAAAGGTTGTATGCC GCATG GGCATACAACCTTTTA    TTTTAGGACACCACT 100 23
 CT43_CH0556 NONE
 CT43_CH0557  647323 ..  647351 +  -7.7  -5.60993   ACATTTAGTTCAAAA        CAAAGTATATA AAACAAA TATATACTTTG        TTTTTTTATACAAAA 100 42
 CT43_CH0558  648946 ..  648965 +  -8.6  -5.93809   AATAGAAATGAAGAA            GCAAAGGG GAAA CTCTTTGC             TTTTTTTTATGGACA 100 44
 CT43_CH0559 NONE
 CT43_CH0560  650670 ..  650692 + -12.1  -3.78934   AAATAATAAGAGTGA           GAGGATGAG GGATG CTCATCCTC           TTCTTGTAAAGAAAG 100 60
 CT43_CH0561 NONE
 CT43_CH0562  652223 ..  652233 +  -5.4   -4.4648   GTCCTGTCCCCCAAA                 TTCC AAC GGAA                 TTTTATGATGACAGT  70 206
 CT43_CH0564 NONE
 CT43_CH0565  656690 ..  656726 + -21.9  -4.56597   ACTAATAAAGTGAAA    CATAAAAGCGTGAGAGT ATA GCTCTCACGCTTTTATG    TTTTTAACAGAGGAG 100 28
 CT43_CH0566  657232 ..  657265 +  -9.7  -4.60317   TTCTAATATTAAAAA     GCCCAATTTCTTAGT TACA ATAGAGAAATTGGGC      TTTTGCTTATTCTAT  93 73
 CT43_CH0567 NONE
 CT43_CH0568  659331 ..  659349 +  -7.4  -5.28683   CAACTGAACAAAAAA             GCTGCTTA TAT TTAGCAGC             TTTTTTCGTCTTCAT  91 44
 CT43_CH0570  661080 ..  661110 + -16.4  -3.93963   TTAATGCGGGATAAA       GAAACACGACTATT GAT GATAGTCGTGTTTC       TTTATGGATGGTAAT 100 182
 CT43_CH0573 NONE
 CT43_CH0574 NONE
 CT43_CH0575 NONE
 CT43_CH0576  665616 ..  665635 + -12.2  -3.57572   GTATCTGCATAAAAT            GAGCACTC GAAA GAGTGCTC             TTACTATTTTCATTA  95 29
 CT43_CH0577  667503 ..  667520 +  -9.1  -4.41114   AATTGCTAGTTAAAA             GCCTCCT TTTT AGGGGGC              TTTATTATATAATAC  89 28
 CT43_CH0578  668001 ..  668021 +  -8.3   -5.4251   TAAAATGTAACTAAA            GACCTTAGT ATA GCTGAGGTC            TTTTTTATGTATAAA 100 38
 CT43_CH0579  668365 ..  668398 + -14.1  -5.30448   AATGAAAATAAAAAA     TAGCTCTTAGCATGT ATGT AAATGCTAAGAGCTA      TTTTTATGTTTATTT 100 87
 CT43_CH0586 NONE
 CT43_CH0587  678043 ..  678062 + -11.4   -5.1287   ACTCGTAATGAAGAA            GCATCGCC TTAT GGCGGTGC             TTTTTTGAGTATAAC 100 33
        rbsR NONE
        rbsK NONE
        rbsD  680426 ..  680437 +  -2.2  -3.68256   GCAAATGTAATTTTA                CATG CAGG CGTG                 ATTTTTTAATAAAGG  47 5
        rbsA NONE
        rbsC NONE
        rbsB NONE
 CT43_CH0594  684522 ..  684548 + -10.3  -5.63517   ATAATAGAAAATCAA         GAATCCTAGTT TAATT GACTAGGATTC         TTTTTTATTTAAAAG 100 37
        inhA  687303 ..  687328 + -12.7  -5.04601   GTTAATAACATAAAA         GCACATTCTTC ATAT GAAGAGTGTGC          TTTTTAATTTGTACA 100 36
 CT43_CH0596  687975 ..  688002 +  -8.5  -5.41359   TTATCATTAAAAAAA        GACAACGATGG ATTATC CCATCATTGTC         TTTTTTACTTTGCTT 100 49
 CT43_CH0598  690436 ..  690467 + -16.8  -5.71712   ATAGAATCGAAAAGA      GTAGCCCTTTTCTA GAAA TAGAAGAGGGCTAC       TTTTTTTCTGTACAG 100 42
 CT43_CH0599  690877 ..  690902 + -13.5  -5.54192   TCGAATAGAAAAAAA         GAGTAAAGCAT GTGT ATGCTTTACTC          TTTTTTTACATTAGT 100 20
         plC  692000 ..  692028 +  -4.7  -4.89852   TAAGTATTTGAAAAA       GGTCAAAT-CTC AGAATA GAGTATTTGGCC        TTTTTATGACTATAC  72 38
         sph  693321 ..  693332 +  -2.2  -2.89565   AACGTTTATGAAGGG                TGGC TGTC GCTA                 TACTTGTGTAAAATT  41 236
 CT43_CH0602  696234 ..  696250 +  -6.6  -6.19302   GCTGAAATAAAAAAA              GACAAC CAAAA GTTGTC              TTTTTTTTATTGTAT 100 31
 CT43_CH0604 NONE
 CT43_CH0605 NONE
 CT43_CH0606  698117 ..  698136 +  -5.6  -2.78384   AAGAAACAGGAGAAA            CCGCCAGT TGGG GCTGACGG             TCTAATAAAAACACA  52 1
 CT43_CH0607 NONE
 CT43_CH0608 NONE
 CT43_CH0609  699484 ..  699494 +  -2.6  -3.95071   AATTGTATAAAGCTT                 TTAA GAG TTAA                 TTCTTTAGCAATTTG  51 15
 CT43_CH0610 NONE
 CT43_CH0611 NONE
 CT43_CH0612 NONE
 CT43_CH0613 NONE
 CT43_CH0614 NONE
 CT43_CH0616 NONE
 CT43_CH0617 NONE
 CT43_CH0618 NONE
 CT43_CH0619 NONE
        sigF  707167 ..  707177 +  -2.6  -3.62046   TGAATGGGAATGAAA                 TAAA ATA TTTA                 TTCTTACAGAAGTGA  48 222
 CT43_CH0621 NONE
 CT43_CH0622 NONE
 CT43_CH0623  708954 ..  708977 + -10.4  -3.63569   CGTAAAAAAATAAAA          CGAGCACT-TG TGC CAGAGTGCTCG          TTCTTGAAACCTTAA  87 419
 CT43_CH0624  709855 ..  709894 +  -3.6  -5.16133   TTTATATTCATATAC  CAAGTTGGCTGTGATTCT GTGT AGAAGAGCGGTCAATTTG   TTTTTATATTATGAT  72 276
 CT43_CH0625  710310 ..  710333 +  -9.6  -5.75478   TTAACTCCTTTTTTA          GAGCATCTAC TGGC GCAGATGCTC           TTTTTTTGTCTGATT 100 154
 CT43_CH0626 NONE
 CT43_CH0627  710867 ..  710878 +  -4.4  -2.62091   AAGCCAATTTAGCTG                GATG GAAG CATC                 ATTCTCAATGAATAT  48 3
 CT43_CH0628  711611 ..  711629 +  -8.2  -5.95286   TAACACGCAGTTAAA             GTAGCAAA ATA TTTGCTGC             TTTTTTATTTTTAGT 100 22
 CT43_CH0629  712195 ..  712205 +    -4  -3.17443   ATAGCACGTCGTGAT                 TACT ATG AGTA                 TGTGTGTTATGTACA  48 27
 CT43_CH0630 NONE
 CT43_CH0631 NONE
 CT43_CH0632 NONE
 CT43_CH0633  716461 ..  716481 +  -9.7  -3.19175   CAGAATACAATATCC            GTAGGTTGG AAG CCAACCAAC            TTGGATATGTTCGCA  78 242
 CT43_CH0634 NONE
 CT43_CH0635 NONE
 CT43_CH0636  717286 ..  717303 +  -4.8  -5.36441   GAATTAGCTAAGTAA             GTCGCT ATAAAA AGCGGC              TTTTTTATATACAAA  82 26
 CT43_CH0637  718218 ..  718230 +  -3.3  -3.37975   AACCAACAAATTTAA                GGAGG TAT CCTAC                TTATGGGTGCTACAT  50 26
 CT43_CH0638  719429 ..  719447 + -10.3  -5.09426   TACGAAATAAATTGA             GAGGAGC GACTA GCTCCTC             TTTTTTAAACTTCAC 100 31
 CT43_CH0639 NONE
 CT43_CH0640 NONE
 CT43_CH0641 NONE
 CT43_CH0642  722389 ..  722401 +  -2.7  -3.38218   ATGGGATGAGGTGAG                TTTGT ATG ACGAA                TTATCCAGTGTTTAC  46 32
 CT43_CH0643 NONE
 CT43_CH0644  728100 ..  728117 +  -6.3  -5.09762   CCTGATTATAAGTAA             GAGCTCCT AAA AGG-GCTC             TTTTTCTATTGCCAT  82 26
 CT43_CH0645 NONE
 CT43_CH0646  729162 ..  729189 +  -9.9  -3.82097   GAAGTAAAGGAAAAA        GGACATCGCTC AAATTA GAACGATGTCC         TTTAGTAAGTTTAAA  87 102
 CT43_CH0649 NONE
 CT43_CH0650 NONE
 CT43_CH0651  733257 ..  733273 +  -2.9  -3.67967   CAGTATATTTATTTG              CCTTACG ACT TGCAAGG              TTATGTATCTCTCTA  50 80
 CT43_CH0653 NONE
 CT43_CH0654  737105 ..  737128 + -12.6  -5.59357   TATGTATATAAAAAA          GCTGACAAAT AATT ATTTGTCAGC           TTTTTTTAGTGTAAT 100 67
 CT43_CH0656  738719 ..  738740 +  -3.9  -4.12188   CCGATTGATGAGAGC           TGATTAAAGT TTC ACTTTA-TCA           TTTTGCCCCTCGTAA  58 101
 CT43_CH0660  742649 ..  742675 + -12.5  -5.61596   TAAACTAAAACGTAA         TCCAACTTTAC AATAC GTAAAGTTGGA         TTTTTTTGTAAGAAT 100 33
 CT43_CH0661 NONE
 CT43_CH0662  743428 ..  743485 + -29.1  -2.63382   CACTATACAGAAATA AATTAGCTTAAAAAGAAACCTTCTTGC ACCG GCAAGAAGGTTTCTTTTTAAGCTAATA CTTGTACATATGACG 100 15
 CT43_CH0663  744194 ..  744223 + -18.1   -5.2112   GAAGAAGTAAAAAAA       GAAGGTGAACTCT TTAA AGAGTTCACCTTC        TTTTTTACTAATGTT 100 31
 CT43_CH0664  745456 ..  745476 + -10.5   -5.1675   AACAGCATAAAAAAA            GATGAGGAG AAA TTCCTCATC            TTTTTTAATCCATCC 100 31
 CT43_CH0666 NONE
       brnQ1  748428 ..  748454 +  -6.6  -5.20328   ATAAATGAGTAAAAA         GGTGTTTTCCTA TTT TGGGAAGGCATC         TTTCTTTTTTTGGAA  88 33
 CT43_CH0668  750290 ..  750311 + -13.1  -5.10004   GAGAAGTGAAAAGAA           GGCAATCCA TGTA TGGATTGCC            TTTTTCATTATTTTT 100 32
 CT43_CH0671  755030 ..  755051 +  -5.1  -5.76633   ATAGATATAGGAGAG           TGAGCTTCT TATG AGAGGCTCC            TTTTTTTGTGTATAA  90 42
 CT43_CH0672 NONE
 CT43_CH0673  755852 ..  755897 + -15.1  -4.86001   AAAAGTGAAGATTGA AATATAAGAAAGGCTTTCC-CG TAT TGAGGAAAGCCTTTCTTATATC TTTTTATACAGTACT 100 26
 CT43_CH0682 NONE
 CT43_CH0683  765262 ..  765290 +  -9.7  -4.82333   CTATTTTATAATAAT        GAAAAAGTCATCT TTT GGGTGGCTTTTTC        TTTTTGGATTATTAT 100 30
 CT43_CH0684 NONE
 CT43_CH0685 NONE
 CT43_CH0686  768245 ..  768270 + -11.3  -5.46276   GTAATTCGTTTATTG         GAGCTATCTTT GCAA AGAGATAGCTC          TTTTTTGTATATATT 100 37
       gerLA NONE
       gerLB NONE
       gerLC NONE
 CT43_CH0690  772225 ..  772249 + -11.6  -3.53091   TGATGTACAAAAAAA          GAAACCTGAA TGATT TTCAGGTTTC          TTTCGGGCAAAGCAT  90 13
 CT43_CH0694  776079 ..  776100 + -10.1  -3.35011   TAATAAAGTTTTATG           GGGCTGGCT GCAA GGCCAGTCC            TGTTCATTTCAATCT  82 38
 CT43_CH0695 NONE
 CT43_CH0696  777962 ..  777989 +  -7.8  -4.91977   ATAAATTATAAAGAA        GAACTCTCTATT TATA AGTAGGGGGTTC         TTTTGTATTTTAATA  87 37
 CT43_CH0697  778612 ..  778651 + -16.8  -4.70659   ATATGACTAAGTAGA  GAAAAGACGTTATCTTCA TTTG TGAAGATAACGTCTTTTG   TTTTTAAATATCAGG 100 27
 CT43_CH0699 NONE
 CT43_CH0700  791020 ..  791043 +  -6.1   -5.5112   AATATAAATTAAAAA          GGATCTC-CA GTTTA TGTGAGATCC          TTTTTTGTTAGTAAA  88 65
 CT43_CH0703 NONE
 CT43_CH0704 NONE
 CT43_CH0705 NONE
 CT43_CH0706 NONE
        tenI NONE
        thiO NONE
        thiS NONE
        thiG NONE
 CT43_CH0711  800218 ..  800230 +  -3.4  -2.81208   TAAGCGAAGCAAAAA                CGAT TTATC ATCG                CTATTTTGGATAGAA  45 0
       thiD1  801083 ..  801100 +  -9.9  -5.88197   ATAGATAAGTGAAAA             GCCAGTT TTAT AACTGGC              TTTTTTTCTGTTTAC 100 37
 CT43_CH0713  802461 ..  802485 + -13.7  -5.32699   TGTTGTTCATTTTTT          GAACACTGAGT AGA GCTCAGTGTTC          TTTTTTAATATTTAA 100 456
 CT43_CH0714  802630 ..  802644 +  -7.2  -3.30629   GTGAAAGAAGGAAAG               CAATCA TGA TGATTG               TCTTATCGGTTATTG  66 17
        kdpA NONE
        kdpB NONE
        kdpC  807108 ..  807144 + -23.3  -3.60098   TTAATGAAATAGAAA    CAACGCTACCTCAATCT AAC GGATTGAGGTAGCGTTG    TTTCGAATGAAAGGT 100 29
        kdpD  808317 ..  808342 +    -4  -4.82678   ATCAAAGAGGATAAA         TAGAGCCGACC TTTTT GGG-GGCTCTA         TTTTGCTTTTTGTAC  68 27
 CT43_CH0720 NONE
 CT43_CH0721  811113 ..  811140 +  -6.3   -5.3321   CAAAAATAAATATTA        GGCTGTGGAGA TGGAGT TCTCTGCAGTC         TTTTTATTATTGGTT  88 32
 CT43_CH0722  811503 ..  811529 +   -16  -5.23316   TGTTATAAAAGAAAA         GTAGAGCATCGG ATT TCGATGCTCTAC         TTTTTTAATGTGGTA 100 92
 CT43_CH0724 NONE
 CT43_CH0725  814734 ..  814756 + -10.6   -4.1523   CAATGTTCCGTAATG           GCTACCGTAT TAT AGACGGTAGC           TTATTTATACTTGGA  91 28
 CT43_CH0726  815084 ..  815117 + -12.7  -3.14693   TTTTGGAGAGGAATG     TAAAAAAGCATACGA TTAA TCGTATGCTTTTATA      TCTGTTAATGATGGA 100 23
 CT43_CH0740  827667 ..  827692 + -10.5  -5.19328   AAGGTTAATAGATGA         GACATTCTCGT TTTT ACGAGGGTGTC          TTTTTATTATGCAAT 100 33
       spoVR  829193 ..  829220 +   -15  -5.27335   TATGTGTGAGGGGAA        GAACGGACATAG GATA CTGTGTCCGTTC         TTTTTATTTGGAACC 100 32
 CT43_CH0742  829439 ..  829476 +  -9.4  -5.63517   AAGATGAAATGAAAA   CGAATCCATTTTGA AAAATATGAA TCAAAGTGGATTCG    TTTTTTGTTTACCAG 100 12
 CT43_CH0744 NONE
 CT43_CH0745  831447 ..  831468 +  -8.1  -5.85425   TGCTTCATTCGTAAA           GAACTTGGA GATA TCTAAGTTC            TTTTTTATTTGTTTC 100 66
 CT43_CH0746  833271 ..  833309 +  -9.9  -2.95091   GTTGTATATTGATAT   TTTTCATCTTCTACT TCAAGATTT AGTGGAAGATGAAAA   TCTATAGATTAAGGT  79 29
 CT43_CH0747  833716 ..  833740 +  -6.6   -4.0896   GTAAAAAGCCGATAA         TCTGTCAAACA TAAT TGTT-GACAGA          TTTTCAAAAACGTTT  71 26
 CT43_CH0748 NONE
 CT43_CH0749 NONE
 CT43_CH0750 NONE
 CT43_CH0751 NONE
 CT43_CH0752 NONE
 CT43_CH0753 NONE
 CT43_CH0754  837850 ..  837884 + -15.3  -4.33417   GATATGATATCAAAA    TAAAAGGATGGTGCTG CTTA CAGC-CCATCCTTTTA     TTTATTGTCCGTAAA 100 23
 CT43_CH0757  841011 ..  841064 + -12.8  -4.26461   GGAAGAACAGTTGTT AAAATATAATAAGAAAGAGACGCT TAAGTT AGCGTCTCTTTCTTATTATAATGA TTGTTTTAAATTGAT 100 17
 CT43_CH0760  845692 ..  845734 + -14.5  -2.87132   GAAATAGAGAGAATA TAAAGGGGAAAAA-CTACTG ATTT CAGCAGCTTTTTCCCCTTTA TATATAAAGAGCGAG 100 34
 CT43_CH0761  847706 ..  847743 + -12.3  -4.04576   ATCATTTTGAAAAAG   TATATAAAACTTCCGTT ACAT AACGGAAGTTTTTTATG    TTTAATTGTATGCGT 100 31
       celC1 NONE
       celA1  848455 ..  848480 +  -4.9  -4.23244   ATATCTTTTTAAATA         TAAACATTATA ATGT TATAAAGTTTA          TTTCATTCTTTTATA  64 43
       celB1 NONE
 CT43_CH0765 NONE
 CT43_CH0766  851172 ..  851194 +   -12  -4.87626   ATAGGGAAGATAGGG           GGCGGTCCAA ATT TTGGAACGCC           TTTTTAATATTAAAG 100 37
 CT43_CH0771  857166 ..  857188 +  -9.2  -5.64873   CATGCGCATAAGGAA           TCACTAGGAT CAT AGCCTAGTGA           TTTTTTGTTCTTAAA 100 11
 CT43_CH0772 NONE
 CT43_CH0773  859146 ..  859184 + -18.4  -4.77173   ATACGATGTGAAAAT   AAACAGAAGCAAGCATGG ATT TCATGCTTGCTTCTGTTC   TTTATTTTGTAGAAA 100 30
 CT43_CH0778 NONE
 CT43_CH0779  863054 ..  863075 +  -6.6  -5.34632   GCTTTAAAGAAAAAA           GAGGTCAA TTTTAT TTGGCCTC            TTTTTCTGTTTTATT  93 34
 CT43_CH0781 NONE
 CT43_CH0782 NONE
 CT43_CH0783 NONE
 CT43_CH0784  865956 ..  865987 + -13.3   -3.0263   CGTTATCCAATCTCA      TAAAAAGCATACC ATGAAC GGTATGCTTTTTA       TATTAAGGAAATAAT 100 23
 CT43_CH0786  869265 ..  869286 +  -8.1  -5.58179   TAAGAGAGAAGAAAA           GAAGCTTAT CATG ATAGGCTTC            TTTTTTGTTATACTA 100 38
 CT43_CH0787 NONE
 CT43_CH0788  869705 ..  869752 + -10.7  -5.83211   CGAAAAAATATAATA GTACAGAAAGATAGCTCGCCG TTTTAT CGGCGAGCTATTTTGTTATGC TTTTTTCTTTTCATC 100 12
 CT43_CH0790  872540 ..  872564 +  -7.9   -5.7946   TTGTATAGAGAGGAA          GGGCTTATCTG ATG TAGGTAAGCTC          TTTTTTTATTCCCAA 100 33
 CT43_CH0791 NONE
 CT43_CH0792  873872 ..  873887 +  -7.6  -5.66338   TAAAGTAGAAGAAAA              GATGAG GAGA CTCATC               TTTTTTATTATCTTT 100 33
        murQ NONE
 CT43_CH0794  876293 ..  876312 + -10.8   -5.1244   GGCAGAAAACATATA            GAGAAAGG GATT CCTTTCTC             TTTTTCTATTAATAA 100 25
 CT43_CH0795  877439 ..  877461 + -13.6  -5.95449   TATTTTGTAAGAAAA           CATTATCCGT AAA ACGGATAATG           TTTTTTGTTTTCTTT 100 49
 CT43_CH0796  878071 ..  878093 +  -9.2  -3.49475   TATTTTTTTACACAA           GATGTAACCG CAT TGGTTACGTC           TTGTGTAAAAATAAA  78 124
 CT43_CH0797  878559 ..  878573 +  -7.2  -2.79983   TTGTAGGTATATGTA               TTACCA TTA TGGTAA               TCATCTCTTCTATAG  63 56
 CT43_CH0798  879017 ..  879038 +  -4.4  -5.26875   AAGAGTAAATAAAAA           CATCGCCA CTTGGA TGACGATG            TTTTTTCATTAAGAA  77 29
 CT43_CH0800  880644 ..  880667 +  -6.1  -5.65927   ATACGAAATGAGGAA          CCAAGC-ATC AATTA GATTGCTTGG          TTTTTTGTTTGCATA  93 11
 CT43_CH0801  881262 ..  881292 +  -9.3  -3.20029   TTTATAGAGAAAAAG      TTCCCACTAT-TAT TTAC ATATATAGTGGGAA       TATATATTTCCATAA  77 45
 CT43_CH0803  882638 ..  882659 +  -8.7  -2.52676   GACAAATTACAAAGA           GCAGCTAGC AAAA GCTAACTGC            TCCATTCAAGGGATC  69 76
 CT43_CH0804 NONE
 CT43_CH0805  883658 ..  883680 +  -9.3  -4.77165   TATATTGTATTTTTA           TCTCCTAAT TGTTT ATTAGGAGA           TTTTATTATAAAAAA  93 44
 CT43_CH0806  884375 ..  884400 +  -9.1  -4.56775   AAAGAAGTAGTAAGA         TGAACCTGTCT GAAA AGGTAGGTTCA          TTTTTGAGGAAAACT  90 31
         blT  885790 ..  885809 + -12.2  -5.86976   TGCGAAGTAATAAAA            CCCCTTAC GACG GTAAGGGG             TTTTTTGTTTTATCC 100 31
 CT43_CH0809  886282 ..  886296 +  -5.7  -3.70773   AAAAAAATATCACTA               CTTCC ATAAA GGAAG               TTATTGCATATACAA  62 48
 CT43_CH0810 NONE
 CT43_CH0811  887489 ..  887523 + -11.6  -4.37886   TTTATATTTGTATGT     GAAGAAGGTACTAC TAAGGAT GTAGTACCTTCTCC     TTTTATAAAAAATCA 100 44
 CT43_CH0813  891039 ..  891085 + -20.4  -5.73978   TTTTGGGCGAGAAAA GGGGGGAATCCAAAAGATTATT AAA ACTGAACTTTTGGATTCCCCCC TTTTTTATTTATCCT 100 414
       racE2 NONE
 CT43_CH0820  899279 ..  899306 + -14.4  -4.87786   TATTTATATAGAAAA        GAAGCTGATTTA AAAA TAAATCAGCTTC         TTTTTATAAGATTAA 100 66
 CT43_CH0822 NONE
 CT43_CH0823  905141 ..  905163 + -13.6   -5.5112   AATAGGTATGGAGGA           GAACTTGTGA TTT TCACAAGTTC           TTTTTTATTGATGAA 100 39
 CT43_CH0824  906263 ..  906296 +  -9.8  -4.58283   TGGATAGATATTATG    CAGACTTCCTTCATGC CTAT GC-TGAAGGAAG-CTG     TTTTTACAACAATTC  93 69
 CT43_CH0825  906904 ..  906921 +  -2.7  -5.69262   CTATACGTTAAAATA             ATCCTTT TACA AAAGGAG              TTTTTGTTTTTATGA  75 25
 CT43_CH0826  907676 ..  907701 + -17.7  -4.65838   TCAATAATTAAGAAA         GGTCTCAAGGC ATAT GCCTTGAGACC          TTTTTGCCATATATA 100 34
 CT43_CH0828  908631 ..  908656 +  -9.1  -5.71295   TGTGTAAATAGAAAA         CTTCCACCT TATTATCT AGGTGGAAG          TTTTTGTTTTTGTAT 100 34
 CT43_CH0831 NONE
 CT43_CH0832  912946 ..  912968 + -12.8  -5.63517   AGCGTAATAGTGGAA           GACGCTCCTA GTT TAGGAGTGTC           TTTTTTGTTTAGGGA 100 34
 CT43_CH0835 NONE
        alsS NONE
        alsD  919065 ..  919095 + -17.8  -4.30014   GCGGAAGGTGCAGAG       TAAAAGGGAAGCCG ATT CGGCTTCTCTTTTA       TTTTGAGTTACTCCC 100 23
 CT43_CH0840  921115 ..  921132 +  -7.7  -6.09888   ACGATGAAAGAAAAA             CGTAGCT TTTT GGCTACG              TTTTTTTTGTTGAGC 100 34
 CT43_CH0841  924826 ..  924868 + -13.7  -3.15663   AATAGTTAACAGATG TATAAAAGGCATCCGAGAT ATACA ATCTCTGATGCCTTTTAAA TTAATACAGATAAAT 100 32
 CT43_CH0844  928338 ..  928364 +   -16  -4.91511   TCGCATAAGAAGAAA         GAGGTTGTTCTG AGT CGGAACAACCTC         TTTTTATCCTGCAGT 100 33
 CT43_CH0845  930149 ..  930182 + -19.1  -5.10064   CGAAAAAATAGAAAA     TGAAGGATGCCCCAT ATCT ATGGGGTATCCTTCA      TTTTTCTGTATTAAA 100 30
 CT43_CH0848  933163 ..  933212 + -13.3  -3.64164   TTTAGATGGTAATTA GAATATCTCACAATTTTACAT ACATTATA ATGTAGAGTTGTGGGATATTC TTATAATGTTTTTAG 100 36
 CT43_CH0849  935018 ..  935028 +  -2.6    -3.272   TATAAAAATTTAATT                 TTTT ATT AAAA                 TTCATATGAGCTGAT  44 50
        csaB  936213 ..  936239 +  -6.7  -5.40279   GATCATATGGAAAAA         GGCACTTTATT AAGAA AGTAAAGTGTC         TTTTATTTTGTTTTG  93 5
 CT43_CH0851  938255 ..  938285 + -15.6  -4.84017   TAATTAAATAAAAAA       GAAGGTGCTACTAA TAT TTCGTAGCACCTTC       TTTTTATCCCGCATT 100 38
 CT43_CH0853  941005 ..  941038 + -11.2  -5.41143   GATAAAGGGGAGAAA     GTGCTAACACATTT TAGTAT AATTGTGTTAGCAC      TTTTTTTAAGGAGTA 100 82
 CT43_CH0854 NONE
 CT43_CH0855  941733 ..  941759 + -13.9  -5.46657   AGTTTTATAGGAAAA         GCATAGCGTTA ATGAG TAACGCTATGC         TTTTTTGTTGCAATG 100 39
 CT43_CH0857  943115 ..  943143 + -10.5  -5.27335   CATAGATAATAGAGA        GCTGATAAAAAAT AAT ATTTTTAATCAGC        TTTTTATTTGGCGAA 100 44
 CT43_CH0858  945008 ..  945059 + -22.2  -4.50993   AACGTGTCTTCTTTC CGTTAATAAATAATAAGAGATTGCC ATT GGCAGTCTCTT-TTATTTATTAACG TTTCTCTTTATTTCC 100 20
 CT43_CH0859  946127 ..  946146 + -13.6  -4.85177   GAATAGAAAGAGAAA            GGTCACCC GTTT GGGTGACC             TTTTTAGTGTAGTTT 100 35
 CT43_CH0861 NONE
 CT43_CH0862  948737 ..  948765 + -13.3  -4.66833   TTGGTATATGGAAAA        GTTGCACCTCTAA TTA TTAGAGATGCAAC        TTTTTACCATTCACG 100 157
 CT43_CH0864  951024 ..  951045 +  -9.5  -3.75153   ATAAGAAACAATAAA           GAAGCTGGT GGAA ATCAGCTTC            TTTAGCTTGAGGGGG  82 37
 CT43_CH0865 NONE
 CT43_CH0866 NONE
 CT43_CH0867  953935 ..  953951 +  -3.7  -2.60496   CTTAAAAAAGTATTT              TCCTATT AAA AAAAGGA              CTATTTGGCAGGAAA  44 65
 CT43_CH0868  954868 ..  954887 +   -10  -5.48213   TGTTTTAGAGGGAGA            GCACTAGG GGGA CCTGGTGC             TTTTTGTTTTACATG 100 33
 CT43_CH0871  957238 ..  957253 +  -4.6  -5.10497   TTCAAATGAGAAAAA              GGCACC TTAA GTTGCC               TTTTTTAACTAGATT  73 66
 CT43_CH0873 NONE
 CT43_CH0874 NONE
 CT43_CH0875  960246 ..  960272 +  -8.1  -3.49419   CCCCTGACATTACAT         TTTGGGGAAGG TTTCT CCTTCTTCAAA         CTTTTTATAGAAGAA  73 100
 CT43_CH0876  960991 ..  961016 + -14.9   -5.4505   CTCTTTAATAAAAAA         TCCGACTCATT AAAA AATGAGTCGGA          TTTTTTATTAAAGAA 100 174
 CT43_CH0879 NONE
 CT43_CH0880 NONE
 CT43_CH0881  967455 ..  967471 +  -5.9  -3.27476   AAAGGGCTAGATAGG              GTTAGAT AAA ATCTAGC              TTACTGATTAAAAAT  59 125
 CT43_CH0882  967994 ..  968014 +  -6.2  -5.59879   GTAATCTTAAAAAAA            CTATTCGT TTTAT ACGGATAG            TTTTTTATGTTTGTA  93 37
 CT43_CH0883  971001 ..  971016 +  -3.4  -3.79866   AATGTTTTGTAGGTA              TATTAA ATTT TTAATA               TCTTTATGTTTCTAA  54 29
 CT43_CH0884 NONE
      dnaB_2  973596 ..  973610 +  -2.2  -2.78463   CCAAAGTTGTAACGC               TAATTT TAT AAGTTA               TATAATAAAGAAAAT  40 80
 CT43_CH0886  974610 ..  974627 +  -6.3  -3.15583   TGTTAGGTTTAATAC             GCAAATC TTTT GGTTTGC              TCTTGAATATATTCC  59 132
 CT43_CH0888  976507 ..  976517 +  -3.2  -4.33739   ATAAGAAGATACTAA                 GGAG AGA TTCC                 TTTTAACATTTTTTA  57 88
 CT43_CH0891  980366 ..  980390 + -10.1  -5.72118   GGTTTATATAAAAAA          GACATCTTTCC CTA GAAAAGATGTC          TTTTTTATATTTTTT 100 41
 CT43_CH0892  981288 ..  981313 + -14.9  -4.13767   TCAATTATAAGAAAA         GCCTCAAGTAT TCAT ATACTTGAGGC          TTTTCCAATGGAAAG 100 51
 CT43_CH0894  982879 ..  982898 +   -10  -4.14243   AATAGTTCCTTAAAA            CGGCAGGA GAAA TCCTGTCG             TTTTCAAATGGAGTG  90 41
 CT43_CH0895  983654 ..  983669 +  -2.5  -5.75478   ATCGAGTCGGAGAAA              GGCAC CTTAGA GTGTC               TTTTTTTATGTAATT  79 85
 CT43_CH0896  984361 ..  984407 +  -9.7  -5.25154   TCTCTGAATCGCCAG TTTCAAAAAGCCTTCACGCAAT GATA ATTGCATGAAGGCTTTT-GATG TTTTCTTATTTTTTT 100 69
 CT43_CH0899  987286 ..  987309 + -12.6  -4.49389   AAAAATATAAGAAAA          GAAGACATCT AGTA AGATGTCTTC           TTTTGCTTGTACAAT 100 39
 CT43_CH0901  990035 ..  990058 +  -8.3   -5.9362   TTGAGGAAGTTTAGA          GAATCAACT TATAAC AGTTGATTC           TTTTTTTGTATTTTA 100 27
 CT43_CH0902  990835 ..  990850 +  -7.6   -3.3506   AGTTCATAAAGAAAA              GACACT TTAA AGTGTC               TTCTACAGATTTGAA  69 156
 CT43_CH0904 NONE
        pssA NONE
 CT43_CH0906  993533 ..  993550 +  -5.6  -6.02919   CATATAAGAAAAAAA             GACATC AATTAA GATGTC              TTTTTTTCTTTGTAA  95 387
 CT43_CH0910  997042 ..  997067 + -10.6  -4.49311   TTCAATTTGTAAAAA         GCCTTTAACT TGTTAT AGTTAAAGGC          TTTTATCATCATGAT  95 78
 CT43_CH0913 1000617 .. 1000638 + -10.1  -3.61421   AGGAATTAGAAAGTC           CCCTCTGCC TTAA GGTGGAGGG            ATTTTTATATAGTTG  86 39
 CT43_CH0914 1001216 .. 1001242 + -13.2  -5.47431   AGCTTTGGATATATT         GAGCTAATCTCT TCT AGAGATTAGTTC         TTTTTTATCTCTTAG 100 57
 CT43_CH0916 1002968 .. 1003013 + -15.7  -4.17132   AGTATTTGAAGGAGT TCCACCTCAAACATACTCCTA TGCA TATAGGTATGTTTGAGGTGGA TTTATTAACGAATTT 100 383
 CT43_CH0918 1004786 .. 1004806 +  -9.8  -5.36689   AATAGTAGATTTTTT            GAACCTCA TTTAT TGAGGTTC            TTTTATTTTTAGTTT 100 36
 CT43_CH0921 1007933 .. 1007952 +  -3.6  -3.82353   TAGACTTTCATGTGT            CATCACTA TTAA TAATGATG             TGTTATTTTTACATA  54 95
 CT43_CH0922 1009473 .. 1009487 +  -2.1  -5.76237   ATATAAATAAAAAAA              CG-CTC AGAT GAGTCG               TTTTTTATTTATATA  78 260
 CT43_CH0923 1011426 .. 1011442 + -10.9  -6.19302   AAGAATGAGAAAAAA              GCATCTG TTT CAGATGC              TTTTTTTTATTATAT 100 39
 CT43_CH0924 1012179 .. 1012227 + -13.5  -3.39749   CGAAGAATAAGCAAG GGTAAAACAAAAACGCTATCTTT TAA AAAGGTAGCGTTTTTGTTTTGGG TTATAAAGTTATTCC 100 21
 CT43_CH0925 NONE
 CT43_CH0926 1013289 .. 1013312 + -10.4  -5.24989   ATGATAGGAGAAATC          CCCTTAAAGT AGAT ACTTTGAGGG           TTTTTTAATGTATAA 100 37
 CT43_CH0927 1013913 .. 1013945 +  -6.4  -4.47786   ATTTTAAATACAAAA      TAACCGATTCCTTA TACGT TAAGAAACCGGTTA      TTTATTTCCCTACTT  74 365
 CT43_CH0930 1017044 .. 1017067 + -10.3  -5.68023   TGTAATAAAGATAAA          GCCTGCCTA CGGAAA TAGGCGGGC           TTTTTTTACTTATAA 100 202
 CT43_CH0931 1018643 .. 1018686 + -15.8  -3.09681   TCTATTTATTGAGCA TGATTAAAAAAAGAGTAGGAT GTA ATCCTACTCTTTTTTTAA-CG TTAACTAGAATTTTA 100 53
 CT43_CH0934 1020024 .. 1020044 +  -9.8  -3.18582   ATACATGTTTATCAA            GCTTTGGT TACAT ACCAAAGC            TTGATAAATCAAATA  78 40
 CT43_CH0935 1020414 .. 1020439 +  -8.5  -5.59357   AATATACATAAAAAA         GCATCC-AATTA AAC TAATTTGGATGC         TTTTTTTAATGTAAT 100 103
        rsbV NONE
        rsbW NONE
        sigB NONE
 CT43_CH0940 1023167 .. 1023196 + -10.9  -4.84914   ATTTATAGAGTGAAA       GAACAAATTCCTA TTTC TAGGGGTTTGTTC        TTTTGTTGTATAAAT 100 49
 CT43_CH0941 1024463 .. 1024493 + -12.8  -5.66338   ATGCGAAATAAAAAG       CGTATGAAATCC AAACAGA GGATTTCATACG       TTTTTTATTGTATTT 100 30
 CT43_CH0944 NONE
 CT43_CH0945 NONE
 CT43_CH0946 NONE
 CT43_CH0947 NONE
 CT43_CH0948 1031033 .. 1031044 +  -2.2   -3.2614   CTCGAAAGGAGGCGT                CGTT AACA AGCG                 TTCGTCTACAAAATA  44 20
 CT43_CH0949 1031913 .. 1031923 +  -3.2  -5.72254   ATACAGGGTTCAAGC                 CGCT TAA AGTG                 TTTTTTATTATTTCC  81 19
 CT43_CH0950 1032478 .. 1032490 +  -4.9  -2.60238   AATAAAGGACAGTTA                CATAT TTT ATATG                ATTACTATGTACTGT  50 75
 CT43_CH0954 1037663 .. 1037707 + -13.2   -5.0916   GAAAACTGATAAAAA CACCTCCATTGAATTTGCATAC TTA GTATGCGAATTCG--GGAGGTG TTTTTCTATTAAGCC 100 32
 CT43_CH0956 1038378 .. 1038394 +    -8  -5.76949   TAGTAGAGTGAAAAA              GAAGCG GATGA CGCTTC              TTTTTTTTAGCGCTG 100 30
 CT43_CH0958 NONE
 CT43_CH0959 NONE
 CT43_CH0960 1043958 .. 1043992 + -11.6  -5.09762   AAAGTGTGAATAAAG     TGGCCTCATTAAGTTT TAA AAGCTTAGTGAGGCTG     TTTTCTTTATTAAAA 100 40
 CT43_CH0961 1044820 .. 1044860 +  -9.9  -4.12901   CTCTAAAAAGAGCAA  GGCGTTATTCTTTCTGA GAAATCA TAGGAAAGGATAACGCC  TTTATATCAATTTTA  90 268
 CT43_CH0963 NONE
 CT43_CH0964 NONE
 CT43_CH0965 1048536 .. 1048570 +   -13  -5.73978   ATAGTAAGTAGGAGA     GCAAGTAGTTTTAGCG GAG TGCTGGAACTGCTTGC     TTTTTTATTTATCCT 100 49
 CT43_CH0966 NONE
 CT43_CH0967 1050164 .. 1050184 + -14.1  -5.28983   ATAATAACAAAGAAA            GGGACTTCA ACA TGAAGTCCC            TTTTTCTATTTTCAG 100 37
 CT43_CH0968 NONE
 CT43_CH0969 1051559 .. 1051597 + -14.6  -5.55769   ATAGAAATTTTGAAA   GGCTACCACCTAGTAGGA TTT TACATCTAGGTGGTAGCC   TTTTTTCTTCTGGGG 100 40
 CT43_CH0970 1052648 .. 1052673 +  -9.9  -4.99568   TTTTCCTTAAGCTGA         GAAGTTAACAA TTTA TTGTTAGCTTC          TTTTCTTTGCTATTA 100 62
 CT43_CH0971 NONE
 CT43_CH0972 1054662 .. 1054683 +  -5.2  -5.61689   ATAATTGGTGAAAAA           CTCTGTAA TAAATT TTACAGGG            TTTTTTATTAGTTTT  87 41
 CT43_CH0973 1056260 .. 1056274 +  -5.8  -3.30854   TTAGTGAGGGCTGAT               TAAAGT TTC ACTTTA               TTAGTATCCATTCTT  59 208
 CT43_CH0974 NONE
        glpP 1057733 .. 1057744 +    -3  -3.15231   TCTTTTGACAAAAAC                GAAT GGCC ATTC                 ATTTTACCTCTATCA  45 190
        glpF NONE
        glpK 1060176 .. 1060226 + -11.5  -5.32944   GGTAGGAGATTTGGA GAGACCAC-AACGC-GCTATAGA GGCGAAA TCTATAGCGGAGTTTGTGGTCTC TTTTTTCGTTATCAA 100 79
        glpD 1061948 .. 1061973 + -14.1  -5.66684   GCATAAAATAGAGAA         CCACCTGAAGG GGAG CCTTTAGGTGG          TTTTTTTATGGGTTA 100 35
 CT43_CH0979 NONE
 CT43_CH0980 1063407 .. 1063433 +    -8  -5.48063   GCATAAAATAGAGAA         CCACCTGAAGGG GAG CCTTTTAGGTGA         TTTTTTCTCTTGACT 100 278
 CT43_CH0982 NONE
        lstR NONE
 CT43_CH0984 1066243 .. 1066264 + -11.7  -5.19328   TTAGAATGAGAAAAA           CACCTTGAT AATC ATCAAGGTG            TTTTTGTTATAAGCT 100 18
 CT43_CH0986 1069277 .. 1069335 +  -9.9  -5.31275   TACAATTTCCCCCTG GAAGAGGGGACATAA--AAAAGCTCGGGC TTA GCCCGAGCTTTTCATTATTTCTTTTCGTC TTTTTTATCGTCAGC 100 185
 CT43_CH0988 NONE
        ecsA NONE
        ecsB NONE
        ecsB NONE
        ecsC 1076339 .. 1076365 + -13.2  -5.83211   GGGATTAAAAAGAAA         GCATCCTAAATT TGT GATTTAGGATGC         TTTTTTGTTTTAATG 100 33
 CT43_CH1002 NONE
 CT43_CH1003 1081120 .. 1081153 +  -7.6  -3.68619   GGCCTAAATATTAGA     TTACAAGAAGCACT CACAAC GGTGCTTTTTGTGA      TTTAACTGGATTAAA  73 27
 CT43_CH1004 NONE
 CT43_CH1005 NONE
 CT43_CH1006 NONE
 CT43_CH1007 1084080 .. 1084103 +  -7.4  -5.55769   GAATAATTTGAGAAA          GCTTGCCTAT TCTG AAGGGCAAGC           TTTTTTGTTATAGGG 100 35
 CT43_CH1008 1085019 .. 1085049 +  -9.9  -6.22802   TTTTTATATAAAAAT      TATGCCCTCTATGT TTTA GCATAGAGGGC-TA       TTTTTTTTTGTGAAA 100 121
 CT43_CH1009 NONE
 CT43_CH1010 1085828 .. 1085859 +  -6.8  -5.74122   AGATTTAAATAAAAA      TGTTATTACTCGATG TAA CAA-GAGTAATAACA      TTTTTTTATGTAATG 100 43
 CT43_CH1012 1087162 .. 1087198 +    -6  -6.09888   TATATAATGCGAAAA    TAATTCACCATTGCTT CTTTA ATGCAGTCGTGAATTA    TTTTTTTTATTAGAA 100 52
 CT43_CH1013 1093758 .. 1093784 + -16.8   -5.0538   TAATAAAAGTGAAAA         GGTATCCTCAAA GTA TTTGAGGATACC         TTTTTTAGCATAAAA 100 54
 CT43_CH1014 NONE
 CT43_CH1015 1095725 .. 1095748 +  -3.1  -4.89852   GTTTTTGAGGAAAAG          CACCTGTCCT TTTTT AGG-CTGGTG          TTTTTCTCACTATAA  65 47
 CT43_CH1016 1096758 .. 1096786 + -15.5  -3.94746   TTGTGTATAAAACGA        TAAACCTTGCATG AAT CATGCAGGGTTTA        TTTGGTTCAATATAA 100 50
 CT43_CH1017 NONE
 CT43_CH1018 1098827 .. 1098854 +  -9.2  -5.30348   TGGTACAAAGAAAAA        GGAAACACCGGT GTGT AATGGTGTTTCC         TTTTTGTTATTAAAT  95 8
        pbpF 1101840 .. 1101851 +    -3  -2.83668   TTAATGAACAACGTA                CATA ATAT TATG                 CATTTTGTTTTTACA  43 108
        hemE NONE
        hemH NONE
       hemY1 1105370 .. 1105410 + -25.9  -3.51137   GAATTAATCGCACAA  TAAACGAAACGCCTTCAAT TAT ATTGAAGGCGTTTCGTTTA  TTATATAAAATACTT 100 23
 CT43_CH1025 1109391 .. 1109414 +   -14  -6.25242   GCTTCTTAAAGAAAG          GAACGCTTAG GTGA CTAAGCGTTC           TTTTTTTTTCATTGT 100 32
 CT43_CH1026 1109840 .. 1109891 +   -14  -4.16371   TGATTATATGTAATG ATAATAAGAGCGTAATTCTCTATG TTAA CTTAGGGAATTACGCTCTTATTCG TTTAATTATTTAGTC 100 50
 CT43_CH1028 1111785 .. 1111801 +  -3.8  -2.91912   ACTACATTTTCTTTA              TACAAA CTTGC TTTGTA              TGTGTGGCTAGCTGG  47 424
 CT43_CH1029 1113327 .. 1113368 + -18.5  -4.76213   TCTATGTCAAAATAA TAGACAGTGTTCTT-AAACT TTT AGTTTTAAGAACACTGTCTA TTTTATTAAATTTCT 100 26
 CT43_CH1030 1114151 .. 1114183 +  -8.7  -3.22113   TTGAACTTTATTTAC      TAAAAGGATTGTC AAACTAA GATAATCCTTTTA      ATTTTATAAAAAAAT  74 6
 CT43_CH1031 1116997 .. 1117011 +  -7.1  -5.83211   TGAAGCGTAAAAAAA               GCACC TTTTT GGTGC               TTTTTTCTTTTAATA 100 31
 CT43_CH1032 NONE
 CT43_CH1033 1117660 .. 1117681 + -14.5  -3.32521   AGTTAAAATAATGAA           TCAGCGAGG GGAT CCTCGCTGA            TTATAAGCCTGTGCT 100 30
 CT43_CH1034 NONE
 CT43_CH1035 1119882 .. 1119904 + -12.8  -5.80817   ATAAGATGTTATTAG           CCTAGTAGAC TAT GTCTGCTAGG           TTTTTTTATGTTCAC 100 21
 CT43_CH1037 NONE
 CT43_CH1038 1121997 .. 1122027 + -15.5  -5.10601   TATTCTTCTAAAAAT       GAGGGAGGCTGCC ATAAA GGCAGCCTCTTTC       TTTTTATAGTTTTGT 100 30
 CT43_CH1039 1122677 .. 1122700 +    -4  -4.38712   TTTTAATATAATTAA          TTTAGAATTT TTAA ATATTCTAAA           TTTTATAAAGGTGGG  62 142
 CT43_CH1040 1124258 .. 1124289 + -18.2  -5.66684   ATGCAAGTGTAAAAA      TGAGGCAACCATCT TTGA AGGTGGTTGCCTCA       TTTTTTTGTGCATTG 100 29
 CT43_CH1041 1124702 .. 1124739 +  -5.8   -5.1764   ATCAGATAAACTGAA  GGCGCAC-A-ATGTTCAC ATTT GTGAATATATTGTGTGCC   TTTTTCTATTGTATA  83 129
 CT43_CH1042 NONE
 CT43_CH1043 NONE
 CT43_CH1044 NONE
 CT43_CH1045 1128644 .. 1128690 + -11.9  -5.36441   GAGGATTTTGTAATT TAAATAAAAACCGAACCGTCAT CTAA GTGGCGGTTCGGTTTTC-TTTA TTTTTTCTCTACCAA 100 23
 CT43_CH1047 1131108 .. 1131128 + -10.5  -5.08824   ATAGGGGTTATGAAA            TAGAGAGCT GAT GGCTCTCTA            TTTTTTCAATAAAAA 100 37
 CT43_CH1048 1132211 .. 1132242 +  -9.6  -5.52023   ATTTCGAATTAAAAA      GAAGTAGCGCATC GTTTTTA GA-GCGCTACTTC      TTTTTTATTAATAAT 100 29
 CT43_CH1051 1134910 .. 1134931 +  -5.9  -5.96219   GTAATAGGGTAAGAG           CGAATCATT GGGA GATGGTTCG            TTTTTTTTATAAGTG 100 37
 CT43_CH1055 NONE
 CT43_CH1056 1141173 .. 1141194 +  -5.3   -4.4773   AATGAAATGATATCA           TCAAATAAG TTTT TTTATTTGA            TTTTACTTAGTCTAG  69 75
 CT43_CH1057 1141449 .. 1141459 +  -3.2  -5.53436   TTAATAGATGTACTT                 CCTT AAA GAGG                 TTTTTTATGTTATCT  77 20
 CT43_CH1058 NONE
 CT43_CH1059 1142960 .. 1142975 +  -4.7  -5.93809   ACAAAGAAAAAAGGA              GTAGC TATTAT GCTAC               TTTTTTTTATAGAGA  93 22
 CT43_CH1060 1144859 .. 1144885 +   -11  -5.84381   ATAAATATAAAAAAA         GCATCCTCTTTT AAT AAAAAAGGATGC         TTTTTTTATTGCTAC 100 59
 CT43_CH1061 1146118 .. 1146139 + -10.3  -5.85425   GAGTGAAATATGAAA           GCACAAATA GAAA TATTTGTGC            TTTTTTGTTTGTTTA 100 40
 CT43_CH1062 1147054 .. 1147077 +  -9.6  -5.37043   AAAATAATACAAAAA          GGTCGTTGTT GTAT AACAGCGGCC           TTTTTTGTATGAAAT 100 70
        aceB NONE
        aceA 1150127 .. 1150151 + -18.7  -4.12603   ACGAAATAAAAGGAA          GGGGCACCTTT TTG AAAGGTGCCCC          TTGTTATTTCCTAAA 100 32
       cspA1 1152047 .. 1152064 + -11.3  -5.55698   TGATGATAAAAAAAA             GGATGGC TAAT GCCATCC              TTTTTTTAGGTTGTG 100 50
 CT43_CH1070 NONE
 CT43_CH1071 1153827 .. 1153846 + -12.2  -6.02919   AGGCGAGGTGTGAAA            GAATGGGG GAAT CCCCATTC             TTTTTTTGTTTATCC 100 28
 CT43_CH1072 NONE
        sipT 1155437 .. 1155456 +  -6.5  -5.23316   TAGAAGTATAGAAAA            GACAAAC AACTCA GTTTGTC             TTTTTTCGTGTACTA  84 51
        addB NONE
        addA NONE
 CT43_CH1076 1163179 .. 1163197 + -11.8  -5.46629   AGATAAAAGAAAAAA             GTAGGAGA ATA TCTCCTAC             TTTTTTTAAGCTGTT 100 139
 CT43_CH1084 1166612 .. 1166646 + -17.5  -2.86475   AATGTAGTGAAATGA     GAAAAGAGCTATCTT GTATA AAGATAGCTCTTTTC     TATGGTCTCGGATTA 100 26
 CT43_CH1087 1168756 .. 1168792 +  -8.2   -5.8096   CAAATAAAAATAAAA   CCACCTTATAATCTCAA AGAC TTGGGAG-ATAAGGTGG    TTTTTATTTTTTATG 100 34
       asnO1 1171451 .. 1171474 + -11.8  -5.06414   AGGAATAAGGGAAAA          GCGGCTTACA ATTA TGTAAGTCGC           TTTTTATTAAAGAAA 100 33
       hemH2 NONE
        katB 1174125 .. 1174148 + -11.8   -5.4251   AAATAAATAGGAAAA          GACGACTGTT ATGA AACGGTCGTC           TTTTTTATGTGTAAA 100 35
 CT43_CH1093 1177199 .. 1177230 + -14.6  -4.99035   TTTGTTCGGTGGGGC      CAGGTTAGGGAGAA AGTC TTCTTCCTAGCCTG       TTTTTGTGTCAATAC 100 91
 CT43_CH1094 1178289 .. 1178311 + -14.2  -4.21936   TGAAATATAATAAAA           CCTACAGGGG AAA TCCCTGTAGG           TTTTACACTTATAAA 100 58
 CT43_CH1096 1180618 .. 1180649 + -13.2  -5.41359   ATAGAAGATTAAAAA      GCACAACCTTATGT AAAA AGATAAGGTTGTGC       TTTTTTAATTTCCTT 100 42
 CT43_CH1099 1182731 .. 1182750 + -12.2  -5.22312   TTCGGAAAGATTAAA            GAGGACCA AAGT TGGTCCTC             TTTTTTAATGTACAT 100 27
 CT43_CH1103 1184685 .. 1184704 + -12.2  -5.37345   AAAACCGTAACAGAA            GCCGCAAT CGTT ATTGCGGC             TTTTTTGTCATTACA 100 31
        clpB 1187501 .. 1187523 + -12.8   -5.6473   AATGAAAATAAAAAA           GAGTTCGGAT AAA ATCCGGACTC           TTTTTTTAGTGTTGT 100 36
 CT43_CH1106 1188604 .. 1188628 +  -3.6  -3.81557   AAGAAGAATTGTGAA         GCTCC-CATAT ACAT AAATGAGGAGC          TATTTGTTTCAAAGG  54 27
 CT43_CH1107 1189499 .. 1189518 +  -2.8  -3.37198   AAAGAGTTATACGAA            GAGTAGCA CGCG TGTTACAC             TATTGTATGTGAAAG  44 20
 CT43_CH1108 1189761 .. 1189792 +    -8  -5.28942   TTTTGATGGAGGAGA      GGCTCGAATCGT GAGTAGAA GCGGTTCGGGCC       TTTTTATTTGGAATG  93 51
 CT43_CH1109 NONE
        fabH NONE
        fabF 1192179 .. 1192218 + -15.3  -4.89966   AAATAATAGATAAAA  TAAGGAGTTTTTCCGCA TTATAT TGCGAAAAAACTCCTTA   TTTATTTTTACGTCT 100 35
 CT43_CH1112 NONE
 CT43_CH1113 1193960 .. 1193973 +  -9.5  -5.81622   AGGTAAATTAAAAAA               CCGCC AATT GGCGG                TTTTTTTAATTTTGT 100 30
 CT43_CH1116 1197806 .. 1197834 + -11.1  -4.17316   TTCCATCGTTTACAG        GGGTATATGCCTA TGA TGGGCATATGCTC        TTATTTTAAAAAAAT 100 48
 CT43_CH1117 NONE
 CT43_CH1118 NONE
 CT43_CH1119 NONE
 CT43_CH1120 1201852 .. 1201878 + -13.1  -5.40625   TCAATAATAAAAAAA         GCCATTCTTCC ATTAA GGAAGGATGGC         TTTTTTCTATACTAT 100 34
 CT43_CH1122 1205412 .. 1205428 +  -5.1  -5.54894   AGGAAAATAAAAAAA              GCAGG CTAACCA CCTGC              TTTTTTTAATACGTT  85 31
        spxA 1206643 .. 1206668 +  -8.5   -5.9663   ATAATAATATGAAAA         CCTTCTACCTAT TAT ATAG-TAGAAGG         TTTTTTTTAATGTTT 100 43
        mecA 1208379 .. 1208404 +  -9.1  -4.96848   CCTGCTAAAACGTAG         GCCGATTTC TGTAGTAT GAAATCGGC          TTTTTATATGAAGAA  95 26
         cls 1209999 .. 1210023 + -11.5  -5.00884   CCATTATTATAAAAA          GAGATGTCCGA AAT TGGGACATCTC          TTTTTTAAAAGGAAT 100 29
 CT43_CH1128 NONE
       pepF1 1213206 .. 1213227 +  -8.1  -5.47821   AAAGTAATGAAAAAA           GACGAGGGAT TGT AT-CCTCGTC           TTTTTTTGAATAGAT 100 34
 CT43_CH1133 NONE
 CT43_CH1134 NONE
        ppnK NONE
 CT43_CH1136 1218682 .. 1218719 + -15.3   -5.4505   AGGAATGCTTAAAAA   GGGAACAAAATTCTTATA TTA TA-AAGAATTTTGTTCCC   TTTTTTCTTAGCGGA 100 29
 CT43_CH1139 1222605 .. 1222623 +  -6.8  -2.73124   TGACTTAAAGGCTCA             GAAATGTA TAT TGCATTTC             CTTTAGAAAGTAAAG  57 447
 CT43_CH1144 1226057 .. 1226067 +  -5.4   -2.8371   GATAAAGATTCATCG                 GGAT TTA ATCC                 ATTTGAATAATTATT  53 5
 CT43_CH1147 NONE
 CT43_CH1148 NONE
 CT43_CH1149 NONE
 CT43_CH1150 NONE
        rfbC NONE
        rfbB NONE
        rfbD 1232784 .. 1232809 +  -9.2  -5.67283   TTATAGAAACCAAAA         GTCATTAACA AATTTC TGTTAATGAC          TTTTTTGTTTGCCTT 100 18
        fabI 1233691 .. 1233718 +   -10  -5.50774   ATATTAATTTTTAAA        GGACAATCTC TAAATGCT GAGATTGTCC         TTTTTATTTGTTCTG 100 46
 CT43_CH1155 1234188 .. 1234199 +    -3   -5.4505   GGATATGAATAATGA                TGAA AAAA TTCA                 TTTTTTATTAAACCG  74 156
 CT43_CH1157 NONE
 CT43_CH1158 1235714 .. 1235740 + -14.6  -4.75372   TATTATATATAAAAA         GCGGTATTTCTG TAT TAGAAATACCGC         TTTTTACTAACTAAT 100 68
 CT43_CH1165 1242093 .. 1242112 +  -6.5  -5.54907   TGTTAGGGGAGAAAA            GAGAAGT TGTGAT ACTTCTC             TTTTTGTTTTATAGA  93 41
 CT43_CH1166 1242541 .. 1242583 + -12.3  -4.01888   AACTCAAATATTGAA ATC-AAGTAAAAGAGTGGCT ACAA AGCCACTCTTTTACTTTGGA TTTGTCATATAAGGT 100 17
 CT43_CH1169 1245281 .. 1245316 + -14.1  -5.03994   TTAAGGTGGCACCAC    GGGAGTACCCGTCCT TTCTAT AGGATGAGTACTCCC     TTTTTGTGTATAAAA 100 37
        trpE NONE
 CT43_CH1171 NONE
        trpD NONE
        trpC NONE
        trpF NONE
        trpB NONE
        trpA 1251996 .. 1252014 +  -9.6  -5.48213   GCAACAAAACAAAAA             GAAGAGGC GTA GTCTCTTC             TTTTTGTTTTGCGTA 100 14
 CT43_CH1177 1252448 .. 1252463 +  -8.2  -5.15381   GGGAGTGAATGAAAA              GGGGCC GTTT GGCTCC               TTTTTTAAATCTGTT  93 33
 CT43_CH1178 1254058 .. 1254076 + -11.8  -5.96219   TTGAGAAATTAAAAA             TCCTCCTA ACA TAGGAGGA             TTTTTTTTATGAGTG 100 29
 CT43_CH1179 1254829 .. 1254865 + -22.6  -4.36914   AAGGGGAATAATTAA    TAAGAAGAGGGCGTTC AAAAA GAACGCCCTCTTCTTA    TTTTATAAAACGAAA 100 26
 CT43_CH1181 NONE
 CT43_CH1182 1257902 .. 1257943 +  -7.6  -6.30182   TCAAGAGAATAGAAC ACATGAAAAAAGGTACGGT GCATA ACTGTACCTTTTTT-ATGG TTTTTTTTTATCTGA 100 29
 CT43_CH1183 NONE
 CT43_CH1184 1259902 .. 1259921 +  -9.4   -5.7946   GCAAGGAGAGCAGAA            TAGCACTT TTTA AAGTGCTA             TTTTTTTGTTAAAGG 100 23
 CT43_CH1185 1260671 .. 1260685 +  -5.8  -4.23758   AAGACCCCTATTGAT               TAAAGT TTC ACTTTA               TTTTGAATATACCGT  69 203
 CT43_CH1186 1261207 .. 1261226 +  -7.1   -5.4148   TTAATTTAGTAAAAA            GCAGGCC CATAAA GGTCTGC             TTTTTTACTTATTTC 100 32
 CT43_CH1193 NONE
 CT43_CH1194 NONE
 CT43_CH1195 1273360 .. 1273375 +  -7.6  -5.82036   AATGTAAAAACGGAA              CCTTAC TTCG GTAAGG               TTTTTTCTTTATTGT 100 41
 CT43_CH1196 1273892 .. 1273904 +  -4.9  -3.60186   ATCCGTGGGTGTTAA                GAAAA ACT TTTTC                CTTTGTTTTATTTTG  58 155
 CT43_CH1197 1274122 .. 1274143 + -10.2  -5.52079   TGAATAAGAGCTAAG           CCAGCAAC CTTAAA GTTGCTGG            TTTTTATTTTGCTAT 100 27
 CT43_CH1198 NONE
 CT43_CH1199 NONE
 CT43_CH1200 NONE
 CT43_CH1201 NONE
 CT43_CH1202 1276747 .. 1276793 + -13.2  -4.33151   TTATGGAAACAAAAA GAGGACTACCCCTGAGTCAGC TGGTTT GCTGACT-AGAAGTAGTCCTC TTTTAACTTGTGGTG 100 391
 CT43_CH1206 1280098 .. 1280120 +  -4.2  -5.28561   GATAGATGAGAAGGA           TAAGAAAGAG TAA TTCCTTCTTA           TTTTTATTGTATATT  74 13
 CT43_CH1207 1281564 .. 1281589 +  -4.7  -5.39721   ACGTAGTAGTAAAAA         GACTGTGGAGA GATT TTGTCACAGTC          TTTTTTATATGCTAA  82 40
        sipW NONE
 CT43_CH1209 1282976 .. 1282996 + -11.2  -5.38398   AGATAATAACAAAAA            GGGCTATC ACATG GATAGCCC            TTTTTCTATTTTTCT 100 35
 CT43_CH1210 1283953 .. 1283981 +  -6.8  -4.88646   TAGTAATATTTATAC       GAGTGTGAGGG AAAGTTAG CCCTCAC-CTC        TTTGTTTTGCTTTTT  83 107
        calY 1284858 .. 1284872 +  -8.5  -5.60993   AAAAATAATAAAAAA               GCGGG TATCC CCCGC               TTTTTTTATAAAGAA 100 33
 CT43_CH1214 1288195 .. 1288219 + -13.7  -5.60993   GTTAATACAGTAAAA          CTACCGAGAGA TTT TCTTTCGGTAG          TTTTTTTGTGAGCAA 100 36
 CT43_CH1215 1289763 .. 1289782 +  -9.3   -5.0916   GCCGTATGATAATAG            CCCCTTC GCGATG GAAGGGG             TTTTTCTGTTCGACG  95 65
        potA NONE
        potB NONE
        potC 1292578 .. 1292591 +  -4.5  -3.96148   GGTGAAGAAAACTCT               GGAGG ACAC CTTCC                TTTATAATACGAACG  60 5
        potD 1293696 .. 1293720 + -12.3   -5.1861   AAATAAGTAAGAAAA          TGCGGTTTCTA AAG TAGAAATCGCA          TTTTTTCATAGTAGG 100 35
 CT43_CH1220 1294400 .. 1294435 +  -9.8  -5.76237   GAGAGATAGAAAAAA    CGCCTGGAAAAACTAT CATT ATAGTGTTCCTAGGCG     TTTTTTGTTTGTATA 100 32
 CT43_CH1221 1296703 .. 1296723 + -12.7  -5.64274   ATCATCGTAAAAAAA            TGCTCATCA TAT TGATGAGCA            TTTTTTTATGAATAG 100 31
 CT43_CH1222 1297218 .. 1297241 +  -8.9  -3.54256   GACTTAGAGCTTGAG          GGGCAGTCT ATTATA AGACTGTCC           TCTATTTTTGACGGT  78 27
 CT43_CH1223 1298321 .. 1298331 +  -5.4  -3.17763   TAAGAGAAAAGAGAG                 GTGA GAA TCAC                 TTGATCAAATATAAG  54 106
 CT43_CH1224 1298937 .. 1298971 +   -16  -2.62988   AAGTTATGAAACTTA     AAAAAGAGTCTTCTCA TTA TGAGAAGACTCTTTTA     ATCTATTTACTTTGT 100 25
 CT43_CH1229 NONE
 CT43_CH1230 NONE
 CT43_CH1231 NONE
 CT43_CH1232 1307381 .. 1307403 +   -10  -4.21773   ACAGGATGAGGGGGG           CATGTTCTAA TTT TTAGGACATG           TTCTTTATATTGAAG  93 16
 CT43_CH1233 1308541 .. 1308559 +  -3.9  -4.41114   AGAAGAGGGAGAGGA            TAGGC-CA TGGT TGAGCCTA             TTTCTTCTCTACTCA  62 104
 CT43_CH1234 1309359 .. 1309369 +    -4  -2.88663   CTCATGAAGGGGGAA                 CATA AGC TATG                 TCTATGAAAATCAGT  47 34
 CT43_CH1235 NONE
 CT43_CH1236 1311510 .. 1311530 + -12.6   -4.7373   ATAAAAGAGGGGAAA            GCAGGCCA GAAAA TGGCCTGC            TTTTTAGTAGAATAA 100 37
        comC NONE
 CT43_CH1238 1312662 .. 1312682 + -12.7    -4.946   GTGGGAAGCTAAAAA            CTCCAAAGT AAA ACTTTGGAG            TTTTTAATGTTTCAT 100 29
 CT43_CH1246 1318877 .. 1318887 +  -3.2  -4.16943   CAGGAAAAAGAGAGA                 GGGA GAA TCTC                 TTTTCACATGTAAAC  57 60
        phbB 1319749 .. 1319779 +  -3.4  -5.00616   TAATGAAGTAAGAAA      AAAGTGCATATCC ATAGCA GGA-ATGCACTTC       TTTTTTAAGAAGGAA  69 38
        phaC 1320915 .. 1320938 + -10.4  -5.60993   ATTAAAAATAAAAAA          TCCAACTAGC CTAT GTTAGTTGGA           TTTTTTTATGGAAAA 100 36
 CT43_CH1249 NONE
 CT43_CH1250 1323573 .. 1323599 + -16.8   -5.2189   TTGGATAGTATGAAA         CCATTCTACCTA CGT TAGGTAGAATGG         TTTTTTAGTCGTTAA 100 33
 CT43_CH1252 1324238 .. 1324262 +   -13  -5.63504   AAAGGGAAACAAAAA          TGAGGCGTTT TTTAC AAACGCCTCA          TTTTTTTGTGGGATT 100 23
 CT43_CH1253 NONE
 CT43_CH1254 NONE
 CT43_CH1255 NONE
        phnX NONE
 CT43_CH1257 NONE
 CT43_CH1258 NONE
 CT43_CH1259 1332278 .. 1332302 + -12.9  -4.84311   GTGAAAGTACCTAAA          CTCCCGCCTAA TTT TTAGGAGGGAG          TTTTATTGTCTGCAA 100 46
 CT43_CH1260 1332532 .. 1332561 + -10.9  -5.56264   CTTCATACGATAGGT       AAAAAAGCCCTTT GAAT AAAGGGCTTTTTA        TTTTTTATCTTTAAA 100 11
 CT43_CH1261 1335043 .. 1335072 + -15.3  -5.71712   AAAAAATGAGGAAAA       TACGCTATTCTTT AATT AAAGAATAGCGTA        TTTTTTTATGTGCAA 100 90
 CT43_CH1262 1335881 .. 1335895 +  -3.4  -3.32202   GTTATTAATGATTAA               GGGCGC AAG GAGCTC               TGTTATATAAAAATG  48 1
 CT43_CH1263 1336669 .. 1336697 + -14.8  -5.27923   AAGTTAAAAAGAAAA        GTACCTATCTGT TATAT ACAGATAGGTAC        TTTTTTGTCCCGTTA 100 39
 CT43_CH1265 1338349 .. 1338383 + -13.2  -2.98942   GGTTTTATGAAATAA     GTATAATTACCCTTAT AGG ATAAGGATAATTATAC     TATGTGTAACGGAAT 100 26
 CT43_CH1267 1340534 .. 1340557 +  -5.3  -5.64421   ATATGTTCCAAAGGA          GCTTTGGAT AAATAA ATCCAGGGC           TTTTTTATTTGCAAT  87 43
 CT43_CH1268 1342454 .. 1342479 + -10.5  -4.07568   ATTCAGAATACTAAA         GAGGTGTTTCT AATA AGGAGCACCTC          TTTTCACCAACAAAA  91 109
 CT43_CH1269 1343051 .. 1343068 +  -9.9  -5.53991   AGCGCTAAAGTGGAA             GAAGTGG GAAA CCACTTC              TTTTTTTGATACGTG 100 33
 CT43_CH1270 1343258 .. 1343278 +  -9.8  -5.38047   AAGGAACAGAAAAAA            CGTGATGA TTATT TCATCACG            TTTTTTGTATGAGTG 100 21
 CT43_CH1272 NONE
 CT43_CH1273 NONE
 CT43_CH1274 NONE
        queF 1347202 .. 1347250 + -30.9  -3.32984   ACAATTGATAATCGT TAATAGAAAGAAAGGGCCTGTAT ACT ATACAGGCCCTTTCTTTCTATTA TATTATGCATTTTGA 100 23
 CT43_CH1277 NONE
 CT43_CH1278 1348548 .. 1348573 + -14.9  -4.87389   GAATTTAACATAAAA         GCACACGATTT ATAT AAATCGTGTGC          TTTCTTTTTAAGATA 100 28
 CT43_CH1280 1349702 .. 1349723 +  -3.7  -3.18681   AAAGGGGAATTTTGA           TCAG-CAGGG CAT CCCTCACTGA           TTAGTAACCTTCACC  48 39
 CT43_CH1281 1350277 .. 1350311 + -11.7  -2.52946   TCTGTTCTTTTTTGC    GT-GATGCTGGAGAAA TATA TTTCTTCAGCATCTAC     CGTTTTATGACAAAA  87 197
        nrdI NONE
 CT43_CH1283 1353031 .. 1353062 + -13.2  -3.50454   TAAAAAGTGAGACAT      G-ATGAGCAGGGTTT TCT GAACCCTGCTCATGC      TTAGTTATCATATTT 100 43
        nrdF 1354071 .. 1354120 + -23.5  -4.90778   ACTTTTAATATAGGA TTATAAAGAAAAGCTGTCTTATT CATT GATAAGACAGCTTTTCTTTATAA TTTTGTTTACATAAC 100 33
 CT43_CH1285 NONE
 CT43_CH1286 NONE
 CT43_CH1287 NONE
 CT43_CH1288 NONE
 CT43_CH1289 1357836 .. 1357857 +  -8.7  -5.10461   TTATAATAAAAGAAA           TCCCCGCTT GTAA AAACGGGGA            TTTTTATTACATAAA  95 35
 CT43_CH1290 1359088 .. 1359119 + -16.2  -4.04811   GCACATAATAGATAA      TTAAAAAGTAGCTC TTAG GAGCTACTTTTTAA       TTTGTAATAATTTCT 100 26
 CT43_CH1293 NONE
 CT43_CH1294 1360948 .. 1360958 +  -2.6  -2.74019   GAAGTGTTAAAATTA                 TTTT AAG AAAA                 TAATTGCGAATTATG  40 20
 CT43_CH1295 1361441 .. 1361474 + -19.9  -5.00138   TTATTATAAGTAAAA     GTAAAAGGAAAAGCG TAAT CGCTTTTCCTTTTAC      TTTTTAATTTGAATA 100 28
 CT43_CH1297 1363593 .. 1363617 +  -9.3   -4.5287   AAATATATACAAAAA          GACCACTTGAG TAA TTCAAGCGGTC          TTTTCATTAGTTTGC  89 16
        amaA 1369471 .. 1369494 + -12.5  -5.18866   GAAAAACAAAAAAAG          GCAACTGCG CTCTAT CGCAGTTGC           TTTTATTTCTTTCCG 100 40
 CT43_CH1304 NONE
 CT43_CH1305 NONE
 CT43_CH1306 1371096 .. 1371113 +  -9.9  -5.64873   ATATAGTTCATTAAA             GGATGCA ACTT TGCATCC              TTTTTTGTTATTGAC 100 27
 CT43_CH1307 1371832 .. 1371846 +  -3.6  -4.18782   AACGAAGTAAGATTG               TTAGTA ACA TACTGA               TTTAATTTAGTTTGT  61 449
 CT43_CH1309 1373401 .. 1373424 +  -9.6  -4.77867   TATGCATAAAGAAAA          CAGCCGCT TTATTATT AGCGGCTG           TTTTGTGTTGTATAT 100 511
       bacA2 1375745 .. 1375793 + -13.6  -5.02476   ATTCTATTTCTTCAT TA-TGTAATAAAAAAACCTGCCG AGCT CGGCAGGTTTTTTTATTTTACTA TTTTTTCCACCATAT 100 19
 CT43_CH1316 1377454 .. 1377483 + -10.1  -3.89956   TTACGTGATGAAAGA       GAAGATCTTCCTT ATAT ATGGAAGGTCTTC        TTTCGTGTGTAATAG  87 63
 CT43_CH1317 1377721 .. 1377740 + -10.8  -5.37593   GAGTAAATCAAAAAA            GGAGTGAA TATA TTCACTCC             TTTTTTGATTTACGA 100 19
 CT43_CH1319 1381512 .. 1381548 + -10.2  -5.00616   GAAGATGTGTTTACA    GGATAAGGTATCCCGC GTTAA GCGAGATACCTTTTTC    TTTTTTAGAAAAGGG 100 20
 CT43_CH1321 NONE
 CT43_CH1322 1383034 .. 1383069 +   -12  -5.08824   CGTTAGGTGAATATA    AAAAAGAGGACTCCTT TTAA AAGGAGTCCTCTTTCA     TTTTTTAAGTGCGAC 100 338
       ilvE1 1384938 .. 1384950 +  -3.4   -5.0538   TACGAAGAAAATAAA                GTTG GATAA CAAC                TTTTTTAACATAAGA  69 17
        ilvB NONE
        ilvH NONE
       ilvC1 NONE
        leuA 1390040 .. 1390057 +  -3.5  -2.89564   TAAATATTTGATAGG             TGAGAGAA GCT TTC-CTCA             TCTATCAAATCAAAG  45 38
        leuB NONE
        leuC NONE
        leuD 1393292 .. 1393327 + -15.7  -2.78463   ACCTAGCGTGAAAAC    GTGTAGGTACAA-GGG TTATT CCCGTTGTACCTACAC    TCTACTGAAGAGCCT 100 195
        hisZ NONE
        hisG NONE
        hisD NONE
        hisB NONE
        hisH NONE
        hisA 1398498 .. 1398508 +    -4  -3.01712   AAGAAGTGTTACAGG                 TAAC GAA GTTA                 TGTTAGCGAAACGAA  48 9
        hisF 1399259 .. 1399270 +  -4.4  -3.23708   CAAATGTTGGGGTGC                GGTT ATGA AACC                 TAATTTTTCAAAAGG  52 18
        hisI NONE
        hisE NONE
 CT43_CH1342 NONE
 CT43_CH1343 1401173 .. 1401192 +  -5.7  -5.14563   AAAAGCGTAAGAAGA            GGGGAGA GTTGCA TCTCCTC             TTTTTTCATGGAAAA  83 31
 CT43_CH1344 1402284 .. 1402316 +  -8.6  -5.47159   TTAGTCACAAAATAA     AAAGAAA-CCTTCCG GACT CGGAAGGTTTTCTTA      TTTTTCTTTATTCGC 100 26
 CT43_CH1347 1406087 .. 1406110 +  -9.6   -5.4492   TTTCCTAATAAGAAA          CGCGTGTGAAC ATT GTTC-CGCGCG          TTTTTTGTCTATCTA 100 372
        lysA 1407752 .. 1407771 +  -2.9  -5.96219   TATATTACCGAACAG            TCTTTTC GAAATG GGAAAGA             TTTTTTTTATGAATA  85 269
 CT43_CH1349 1407973 .. 1408009 + -16.1   -5.0925   ACTAGAAAAACTAGA    GGCGGTTTTAACCTATT TTC ATTAGGTTAAAACCGTC    TTTTTGCTTTTACAG 100 50
        cysH NONE
         sat NONE
        cysC NONE
 CT43_CH1353 NONE
 CT43_CH1354 1412548 .. 1412573 +  -9.1  -4.24384   ACGAAAAAATAAAAA         CTTCCATTCTT ATAT ACGAATGGAAG          TTTCATTTTAATAGT  88 52
        cysG NONE
 CT43_CH1356 NONE
 CT43_CH1357 1415033 .. 1415064 +   -16  -5.86976   TACATTACATATATC      GTCCTCTACATGCA TATT TGCGTGTAGGGGAC       TTTTTTATTTTCTAA 100 330
 CT43_CH1358 1416513 .. 1416529 +  -7.9  -5.86465   TGTTTGCATAAAAAA              GGCGGGG ATC TCCCGTC              TTTTTTTATGTTGTT 100 30
 CT43_CH1361 1419855 .. 1419877 + -12.8  -4.64844   TTATAATATGAACAA           GCTCTCACAT AAT ATGTGGGAGC           TTTTCTGTATATAGA 100 41
 CT43_CH1363 1422094 .. 1422117 + -12.5  -5.47218   TAGTAATTAAAAAAA          CGTGCAGAG AATAAA CTCTGCACG           TTTTTTTGCGTAAAG 100 55
 CT43_CH1364 NONE
 CT43_CH1365 1423351 .. 1423389 + -12.7  -3.05022   CTTATGATATAGTGA   TAGGAGAAAAGGTGTTG GAAAG CAATGCCTTTTCTTCTA   TGTATATGTGACAAG 100 63
 CT43_CH1366 NONE
 CT43_CH1367 NONE
 CT43_CH1368 NONE
 CT43_CH1369 1425859 .. 1425886 +  -9.2  -3.07935   GATAAAGTGAAGCTT        TAATTGGCGGGG AATT CCTCGCTGATTA         TTGGCTCGCTACAAT  74 39
 CT43_CH1370 1426271 .. 1426285 +  -2.1  -5.40474   TCAAATGTAAAAAAA              CT-CCC TTTT GGGTAG               TTTTTTTAGGAGGCT  71 31
 CT43_CH1373 1430387 .. 1430420 +  -9.8  -4.67038   TTTCCTAGGAAATGA     TAATAGAGAGGG GAGAAGAACA CCCTCTCTATTA      TTTTGCTTTTGCAGA  93 192
 CT43_CH1375 1431923 .. 1431951 +  -3.4  -3.44848   ATTTCTACGAGAGAA       TGTTACAA-GTAT AGTC ATACATTGTAATA        TCTTTAGTAGAGAAG  50 85
 CT43_CH1376 1432497 .. 1432524 + -12.2  -5.19275   ATACAAACAAAATAA        TAAGCTAGCTAG AATT CTAGTTAGCTTA         TTTTCTTTTGTAAAT 100 26
         hmp 1433889 .. 1433909 +  -6.9  -5.82036   GAATAAATAAAAAAA            CGAGGTA TTTATTT TACCTCG            TTTTTTATTTGTTCT 100 50
 CT43_CH1379 1434812 .. 1434828 +  -9.5   -5.8187   TTCTTCACTAAAAAA              GATGTCA ATA TGACATC              TTTTTTTATTAAATC 100 30
 CT43_CH1383 1440030 .. 1440053 + -11.1   -4.0162   ATTATGGTAAAAAAA          GAGGCGAAT TTCATT ATTCGCCTC           TTTCTCGTGTGAAAA  93 31
 CT43_CH1387 1443507 .. 1443547 + -15.6  -2.87132   AATGATAATAAACAA  GAAAGGCACTGTACAAAC AGGGG GAATGTACAGTGCCTTTC  TATATGAAAAAGAGG 100 36
 CT43_CH1392 1448456 .. 1448473 +  -8.5  -5.95286   TCAAAAAAGAAAAAA             CAGCTAA GAAT TTAGCTG              TTTTTTCTTTTTCCT 100 19
 CT43_CH1394 NONE
 CT43_CH1395 1452138 .. 1452171 + -19.9  -4.43859   ACAAATATTGATTGC     GGAAAAGAAGCTAAG GTGA CTTAGCTTCTTTTCC      TTTTGTACAGTTATA 100 30
 CT43_CH1396 1453153 .. 1453171 +  -7.4  -5.14563   ATGGACACCATATTA             GACGCAAA TTC TCTGCGTC             TTTTTTAATGGAAGC  91 25
 CT43_CH1397 NONE
        spmA NONE
 CT43_CH1399 1455551 .. 1455578 + -11.5  -5.74122   ATAATACGTATACGA        CCACTATTAAG GTGTAG CTTAATAGTGG         TTTTTTTATGTGGTA 100 70
        rluB 1456541 .. 1456566 + -10.5  -4.20516   TATAGAGTTAAAAAT         TCACCAGTGGA GTGC TCTGCTGGTGA          TTTATTCAATACAAC  95 43
        resA NONE
        resB NONE
        resC 1460076 .. 1460110 + -13.9  -4.90296   ATATGCATAGAGAAA     TAAAATAGGAGAGTG CATGT CACTTTCCTATTTTA     TTTTTGTCAACTTTT 100 31
        resD NONE
        resE 1462896 .. 1462949 +  -5.6  -5.47431   TTGATAATGAATAAA GTTCTGCTGTTTTTTATTTTTTTG TAAACT CAATTAAATAAAGAATGGTAGAAC TTTTTTCTATGTTGC  84 57
 CT43_CH1406 1463570 .. 1463591 +  -5.9  -5.43487   TGATAAGAAAGAGAA           GGAAGTGGA GTGA TTCACTTTC            TTTTTTGTATACTTT  86 13
 CT43_CH1407 1464402 .. 1464427 + -16.3  -4.64861   ATATTTAAAAGAAAA         CCGTCCCAAAA TTTA TTTTGGGACGG          TTTCTTTTACCAAAA 100 147
 CT43_CH1409 1466262 .. 1466288 + -12.5   -5.4505   TAATATATATTAAAA         CCATTAGTAGT GTGGA ACTACTAATGG         TTTTTTATTAAGGAA 100 38
       recQ1 NONE
 CT43_CH1413 NONE
 CT43_CH1414 1470574 .. 1470586 +  -4.1  -3.29511   AGCTAGTGAATTAGG                CGAAC GCA GTTTG                TTATAAAAGCCTAGG  49 35
 CT43_CH1415 NONE
 CT43_CH1416 NONE
 CT43_CH1417 1472955 .. 1472990 +   -15  -5.30616   TACTTTGTGAAAAAA    CAAAACCTCAGCTA ATACAACA TAGCTGAGGTTTTG     TTTTTATTTGGATAA 100 11
        gudB 1474588 .. 1474613 + -12.7  -5.80364   TATATCTTGAGAAAA         CGTGATTTCCT TTCG AGGGAATCACG          TTTTTTTGTTGAAGT 100 46
 CT43_CH1419 1474875 .. 1474897 +  -6.3  -2.69178   TAAAAATAAAAAGAA           CGCTTGTTC TGTAC GAACAAACG           TGCTATACTCTCCTT  57 43
 CT43_CH1420 NONE
 CT43_CH1421 1475833 .. 1475850 +  -5.6  -5.80727   CAATAAAGATAGGTG             CCTACT GCTGTA AGTAGG              TTTTTTCTTGTTTTT  91 62
 CT43_CH1422 1476889 .. 1476917 +   -11  -5.14163   AGAGAAAAATAAAAA        TGAGCTGTCGGG AAAAC CTCGACAGCTCC        TTTTTATTCGTGCAT 100 29
         cmk 1479058 .. 1479078 + -10.5  -5.80364   TGTTTGCGAAATAAA            GAAAGGGGA TAA TCCTCTTTC            TTTTTTTGTTGAAAT 100 27
        rpsA NONE
 CT43_CH1426 1481606 .. 1481621 +  -7.6  -6.17669   GTAGGAGATAAAAAA              TCAACC GTTC GGTTGA               TTTTTTTGTTTTGTT 100 30
 CT43_CH1428 NONE
 CT43_CH1429 NONE
 CT43_CH1430 1483877 .. 1483897 +  -9.8   -5.1101   TTCTGGAATGCAAAT            CCCTTCTT GCACA AAGAAGGG            TTTTTTACATAATAA 100 85
        engA NONE
        gpsA 1486300 .. 1486329 + -19.5  -5.86976   TTACTGTAAAGAAAA       GCGACAGAAGTAC ATTT GTACTTCTGTCGC        TTTTTTATTTTATGG 100 32
 CT43_CH1433 1486746 .. 1486772 +  -9.5  -5.38839   GGCATATTTGGTCAA         CCGAAGCGA GAGATATAA TCGCTTCGG         TTTTATTTTTATCTA 100 111
 CT43_CH1434 NONE
 CT43_CH1435 1487917 .. 1487950 +  -6.2   -5.5208   ATCATAAGTCATGAA     CCTTTCTTTTAG TGAATAAGTT CTAGAAGAAAGG      TTTTTTATGTTATAC  93 34
      spoIVA 1489636 .. 1489655 +  -7.9  -6.04324   ATACTATAAGAAAAA            TCCCTCT CACTGT AGAGGGA             TTTTTTGTTTTTTCG 100 32
        hup1 1490221 .. 1490247 + -11.7   -5.0925   CATATTAACAGGGAA         GAAGAGTTTCC TTTTT GGGAACTCTTC         TTTTTGCTTTTAAAA 100 47
        folE 1490891 .. 1490912 +  -9.5  -6.41805   TTAAAGCGAAGTAAA           GAAAAGCGG GAAA CTGCTTTTC            TTTTTTTTTTAGTAA 100 27
 CT43_CH1439 NONE
        ubiE NONE
        hepT NONE
         ndk 1494182 .. 1494213 + -15.4  -6.09196   TGATAATAGTAAAAA      GTGCAAGGAGAATA GGGG TATTCTTCTTGCAC       TTTTTTTATTTTCAA 100 77
       aroC1 NONE
        aroB NONE
       hisC1 1497909 .. 1497927 + -13.2  -5.36965   TTAAGAGATTGTGAA             GGCTCCTA TTA TAGGAGCC             TTTTTTATCGTATTA 100 37
 CT43_CH1446 NONE
 CT43_CH1447 1500146 .. 1500174 + -14.1  -5.54264   TCAGACTTTCACCAA        GAAAAACTACCTA TAT TGGGTAGTTTTTC        TTTTTTTACCTCTTT 100 73
 CT43_CH1448 1500874 .. 1500886 +  -3.4   -3.4398   AGAAAGAACATCGCG                TGTC AAGAA GACA                ATTTTTAAATTACAC  50 185
        qcrA NONE
        qcrB NONE
        qcrC 1502852 .. 1502886 +   -16  -3.55604   ATAATAAAAAATAAT     AAAAAGCTGACTACAA AAT TTGTAGTCAGCTTTTC     TATTTAGTTGGATGA 100 27
 CT43_CH1452 1503541 .. 1503552 +    -3  -4.02022   CTTACGTGAGCACAG                GAAA CAAT TTTC                 TTTATGATGGTTAGA  55 7
 CT43_CH1453 1504253 .. 1504284 + -11.9  -3.86346   GAAAAGGATGTCAAA      GAAAAAATTCTCT GCTTAA AGAGAATTTTTTC       TTTGTAAAACGATAA 100 7
 CT43_CH1454 1505253 .. 1505264 +  -2.2   -3.3341   GTACTATAATTAAAA                CTTC AATG GAGG                 TTCATGATGTTTTAT  44 112
 CT43_CH1455 1505953 .. 1505972 +  -9.4   -5.9218   GTAGCGACGACTAAA            GACTATCA ATTT TGATAGTC             TTTTTTTGTTGTGTG 100 27
 CT43_CH1456 1506691 .. 1506716 + -10.6   -3.3447   ACTTGTAATAAAAAA         CTAGAAAAGC TAAGGC GCTTTTCTAG          TTACATTTAATTATG  83 22
 CT43_CH1458 NONE
        dapB NONE
        mgsA NONE
 CT43_CH1461 NONE
 CT43_CH1462 NONE
 CT43_CH1463 NONE
        birA 1513425 .. 1513446 +  -8.8  -5.31519   CGAAATTAAGTAAAA           GAAGTTCC TCTTTT GGAACTTC            TTTTTATTTCAATAT  95 28
        panB NONE
        panC 1516202 .. 1516212 +  -2.4  -3.24411   TTAACGGTTAAATAA                 GGGG GAG CACC                 TATGTTTCGCACAAT  44 26
        panD 1516606 .. 1516628 + -12.1  -5.30686   ATTATAAGTAGAAAG           GCTATCTCC ATTGC GGAGATAGC           TTTTTTGTGCATCTT 100 34
 CT43_CH1469 1519590 .. 1519614 +  -5.1  -3.88232   GCGTAAAAAATGTGG          GTAGGAGGAAT TTT ATTTTTCTTAC          TTCTTGTATACAAAA  60 82
 CT43_CH1470 NONE
 CT43_CH1471 NONE
        aspB 1521702 .. 1521721 +   -10  -5.41746   ATGTAATATAAAAAA            CCTCCCTA TTGA TGGGGAGG             TTTTTTTGACGAATT 100 56
        dnaD NONE
         nth NONE
 CT43_CH1475 1523666 .. 1523698 +   -15  -5.80003   AATGATAACAAAAAA      GAAGTCCGCTTCTC GTTAA GAGAAACGGACTTC      TTTTTTGTTTATTAG 100 7
 CT43_CH1478 1528212 .. 1528245 + -19.8  -3.51411   TGATATAATAAAAAA     GAAGTCCCGTCTTC CATTTT GAAGACGGGACTTC      TTAATTTGAAACAAT 100 33
 CT43_CH1480 NONE
 CT43_CH1481 1529220 .. 1529245 + -14.9  -5.02439   GTTGAGCAATGTAAA         TAACAAGAGGG AGAA CCCTCTTGTTA          TTTTTATGCTTCTGT 100 23
 CT43_CH1483 NONE
 CT43_CH1484 1530771 .. 1530791 + -10.5  -5.71983   GTAAATGATATGTTA            GAACTAGCG AAA TGCTAGTTC            TTTTTTTGTAATTGG 100 37
 CT43_CH1485 1531441 .. 1531451 +  -2.6  -2.75844   TTTAGTTAATGAAAG                 TTTT GGT AAAA                 ATTTGAGGTGAAGAA  40 96
 CT43_CH1486 1531851 .. 1531863 +  -4.9  -3.64599   TAGAAAAAAACGTTG                CAAAA TCT TTTTG                TTTCCACTATACTAA  58 73
 CT43_CH1487 NONE
 CT43_CH1488 1533852 .. 1533873 +  -8.9  -5.86965   TAATATAGAAGAAAA           TTTTCCTTT TTCG AAAGGAAAA            TTTTTTTTCGTGAAT 100 33
 CT43_CH1490 1537545 .. 1537564 +  -9.3  -5.06414   TGAGTTGTAAAAAAA            GAGCTGC TTAATT GCAGCTC             TTTTTGTTAAAGGGG  95 31
 CT43_CH1491 1538059 .. 1538087 + -12.7  -4.55128   ATATGTAAACATGAT        TAAAAAACAGAGG GGT CTTCTGTTTTTTA        TTTTGATTTAGAAAT 100 23
        maP2 1539218 .. 1539266 + -14.8   -5.8187   TCTTTTTTTGCGAAA CTCCAAAAGCGCGTCTCTCACTTG TAA CGAGTG-GTGGCG-GCTTTTGGAG TTTTTTTATTGCATA 100 273
         xpt NONE
        pbuX 1541216 .. 1541250 + -15.2  -4.66609   AGTAAGAGAAGCGTA     AAAAAGCAAGGTCTCG TTA TGAGACCTTGCTTTTC     TTTTTAAGTGGCATC 100 25
 CT43_CH1496 1542767 .. 1542797 + -10.6  -5.95286   TGATATGACATAAAA       TCCCTTTCATTTGT AAA AAGAATGAAAGGGA       TTTTTTATTTTTAAT 100 42
 CT43_CH1497 1546870 .. 1546904 +  -9.5  -3.54424   TTGTCCATGGTGAAT    CCCTCCTT-TCTATTA TTTA TGGTAGACAAGGAGGG     TTTAGAACAATAGAG  80 291
 CT43_CH1499 NONE
 CT43_CH1500 NONE
 CT43_CH1501 1548778 .. 1548792 +  -4.9  -4.64657   CTGTGAGGGCATCCA               CCTGC GAGTA GCGGG               TTTTTGGACATTTAC  69 271
 CT43_CH1503 1549983 .. 1550000 +  -2.7  -4.07868   ATTTTATTTAAAATA             TCCGA ATTTTTGG TCGGA              TTTATATGAATGTGA  53 73
 CT43_CH1504 NONE
 CT43_CH1505 1551560 .. 1551579 +  -9.4  -5.86976   ATAACTTATTAAAAA            CTTTACGT TTAA ACGTAAAG             TTTTTTATTTTATCC 100 29
 CT43_CH1506 1553065 .. 1553097 +    -8  -5.52384   GAATGGTAATCTATT     TATATAACCTTACGT GATA ACGTGAGGTTAT-TA      TTTTTTTAATAGGAG 100 103
 CT43_CH1507 1553999 .. 1554041 +  -2.9  -5.69262   TAAATAGTTTGGAAA GAGGGATGTTGCATAAGTCGA AAT TTGACTTG-GTGACA-CCTTC TTTTTGTTTTTGTAA  77 38
 CT43_CH1508 1554484 .. 1554528 + -15.6  -3.01791   GTGCCAGTAATTAAA TAAAATAAAAAAAGATAGCCT ATAT AGGCTATC-TTTTTTATTTTA TATTGAAAAAACGCT 100 27
 CT43_CH1509 NONE
 CT43_CH1510 NONE
 CT43_CH1511 NONE
 CT43_CH1512 NONE
 CT43_CH1513 NONE
 CT43_CH1514 NONE
 CT43_CH1515 NONE
 CT43_CH1516 1562542 .. 1562564 +  -8.5  -5.88565   TATATATGAGTTAAA           CAAATGACC GGGTA GGTCGTTTG           TTTTTTTATTATAGA 100 19
 CT43_CH1517 1564252 .. 1564287 +   -15  -5.67283   ATAGGTAATGAAAAA    GAGATTGTAATTTGGT TTCA ACCAAACTACAATCTC     TTTTTTGTTTCAATT 100 89
 CT43_CH1519 1580309 .. 1580357 +   -15  -2.60496   TTGCAGCACAAATTT TTGGATAAAAAAAGAATCCTTT TAAAT GAAGGATTCTTTTTTTATCCCG CTATTTGCCGGGCAG 100 18
 CT43_CH1521 1581474 .. 1581487 +  -2.3  -6.09196   CAAGCGTAACTTCAC               GCAGC CTGC GCTTC                TTTTTTTGTTTTGGA  81 32
 CT43_CH1525 1584395 .. 1584418 + -11.8  -5.05601   ATGTAATAGATGAAA          GAGCTATTCC TATA GGGATAGCTC           TTTTTGTATGTAATC 100 35
 CT43_CH1526 NONE
 CT43_CH1527 1585391 .. 1585414 +   -14   -5.5943   GTTGTCATAAAAAAA          CATCCAGAGA AAAT TCTCTGGATG           TTTTTTTAGTGCTTT 100 31
 CT43_CH1530 1586976 .. 1586996 + -11.2  -4.78933   AAGATAAAAAAGTAA            GAGCCATC ACCTA GATGGCTC            TTTTGTATATTTTGG 100 26
 CT43_CH1531 NONE
 CT43_CH1532 1588075 .. 1588099 +  -5.7  -5.00616   AGAATAGAAAAGAAA          TAGTCGTAACG ATA TGTTGCGGCTG          TTTTTTGGGAAAAGG  80 54
 CT43_CH1533 1588736 .. 1588768 + -13.6  -3.14132   GGAAAAGGAAAAAAA      GACAAAAGTAGTGC GTTAA GCGCTGCTTTTGTC      TTAATGAAGAAAAAA 100 7
 CT43_CH1534 NONE
 CT43_CH1535 1590880 .. 1590906 +  -6.7  -5.86976   CATTAAATAAAAGAG         GAGCTTTTC GATAGATAA GAAAAGCTC         TTTTTTCTTTTGTCA 100 35
 CT43_CH1536 1592425 .. 1592451 + -11.6  -4.00042   AATAAATAGAGAGAG         GAGCGAGCTGTA ATA TAAGGCTCGCTC         TTGTTTAGTAGGAGG 100 39
 CT43_CH1537 1592764 .. 1592805 + -13.3  -3.46178   GTTTAAAGATAAAAC AAAAAGGAGATTGCTATCT TATA AAATAGCAATCTCCTTTTA  TTATAGTAAATTTAT 100 35
 CT43_CH1539 1595164 .. 1595182 + -11.8  -3.59979   TTAATTCTCTATTGA             CCTTCAAG TTA CTTGAAGG             TTTAAACTGAGGAAA  95 94
 CT43_CH1540 1596592 .. 1596613 + -11.7   -5.9003   ATATGATGAAGAAAA           TCCCCTTAA GCAA TTAAGGGGA            TTTTTTTATTCCTTT 100 35
 CT43_CH1542 1598034 .. 1598057 + -15.4  -4.05788   ATATAGTGAAAGTGA          TCCCGTCTGA AACT TCAGACGGGA           TTTAATTTGAGGAAA 100 35
 CT43_CH1543 1598567 .. 1598589 +  -6.3  -5.01535   GACGTTTTAAAAAAA           GAGCACTTC AAAAA GAATTGCTC           TTTTTGTGCTTATAA  82 102
 CT43_CH1544 1599409 .. 1599432 +  -9.6  -5.00616   AGAAGTGAGTAAAAG          GGTAAACCTG AATG CGGGTTTGCC           TTTTTTGAAAGGAGA 100 33
 CT43_CH1545 NONE
 CT43_CH1546 1600778 .. 1600805 + -12.9  -3.04026   TATTTAATGTGAAAA        TAAAAAGCGGC ATAATA GCCGCTTTTTA         TCGTTTGGTTAGTAT 100 29
 CT43_CH1553 1605926 .. 1605946 +  -4.9  -3.11218   GACAAAGTGCATAAA            TAAAAAATT TAT AGTTTTTTA            TATTAAGATGTTTCA  52 23
        hfq1 1606156 .. 1606204 + -20.8  -3.05384   AAGCAGGCTATATCA ACAATAATGAAATAAGACACTC TTGTT GAGTGTCTTATTTCATTATTGC TTGCATGCCCCAACA 100 11
 CT43_CH1556 NONE
 CT43_CH1557 NONE
 CT43_CH1558 1610139 .. 1610179 + -11.5  -5.14563   TTTTAATTCGAGTTA TGTAAAA-AGGTCGTCAC TCCATT GTGACGACCTCTTTTATA  TTTTTTCGTAGAAGA 100 21
 CT43_CH1561 NONE
 CT43_CH1562 NONE
        flgK NONE
        flgL NONE
        fliD NONE
 CT43_CH1566 1616592 .. 1616605 +  -2.3  -2.83772   AACAATGATATTTAT               CGGAC GTTT GTCAG                CTGTTTTAATGAAAT  41 33
 CT43_CH1567 1616865 .. 1616887 + -10.6  -3.31914   TAACGTCTGGAAGCA           GATCCCCCTT TTA AAAGGGGATC           TATTCCTTCGTTTAC  83 44
        flgB NONE
        flgC NONE
        fliE NONE
        fliF NONE
        fliG NONE
        fliH NONE
        fliI 1622964 .. 1622988 +  -9.4  -6.28401   ATACACCATATAGTA          TAAGGCCTCT GCCGA AGAGGTCTTA          TTTTTTTGTTTTTTA 100 23
 CT43_CH1575 1623497 .. 1623514 +  -2.7  -3.07895   ATGAATGGATGAGGT             GAATGTA GTGA TACAGTC              TGTATTACCGGTGCA  43 29
 CT43_CH1576 NONE
        flgD NONE
        flgE 1626411 .. 1626427 +  -2.3  -3.12606   AGATGAAGTATTAAA              TGAAGTT GTA AACTTAA              TTCGATAATATATCG  42 1
 CT43_CH1579 NONE
 CT43_CH1580 1627640 .. 1627672 +  -9.4   -3.5221   TATAAAATGAATCGT      TCGACTATCTATAT TTTTT ATATAGGTAGTTGA      CTTTTTCGCTTTTAT  80 51
 CT43_CH1581 1628953 .. 1628984 +   -14   -4.9181   TGTTAGAGAGAGGAA      GGAATTAGCCATATG TAT CAT-TGGCTAATTCC      TTTTTAGTATTCTAT 100 331
 CT43_CH1582 1630356 .. 1630394 + -15.7  -4.54047   AAATTGGGTACAAAA   TAAAAGGGAGATACATA GTTTA TATGTATTTCCCTTTTA   TTTTGTATGGAATCG 100 44
 CT43_CH1585 NONE
 CT43_CH1586 NONE
        fliM NONE
 CT43_CH1588 NONE
 CT43_CH1589 NONE
        fliP NONE
        fliQ NONE
        fliR NONE
        flhB 1638571 .. 1638581 +  -3.2  -4.44046   ATAATAGCGCGTTTG                 GAGG AGA TCTC                 TTTGTTTAAGATAGA  60 37
        flhA NONE
        flhF NONE
        flgG 1642793 .. 1642812 +  -8.6  -5.66229   AATATTGAGATAAAG            GACTTCCA AAAG TGGGAGTC             TTTTTTGTTATTGCT 100 28
 CT43_CH1597 1644278 .. 1644294 +  -5.1  -5.95539   AGTATGTAGAAAAAA              GCCTTAT TAT AAAAGGC              TTTTTTTATTTAAAA  93 46
 CT43_CH1598 NONE
 CT43_CH1599 NONE
 CT43_CH1600 NONE
 CT43_CH1601 NONE
 CT43_CH1602 1647197 .. 1647233 + -14.7  -3.68988   CTAAAGGTAAACATA    GAAGGAAGAAAAGTTGA AAG TTGGCTTTTCTTCCTTC    TTCTATTACATCCCC 100 9
 CT43_CH1608 1654126 .. 1654152 +  -3.8   -5.1244   GAAAAGGAGACAACA         GCATGAAAAAAT TAA GTTTTGTTATGC         TTTTTCTATTAGTCG  70 150
 CT43_CH1609 1654662 .. 1654696 + -16.7  -5.45652   AAATAGATTTATAGT     TTGAAAGGCTGTCGT GCATA ACGACAGCCTTTTAA     TTTTTTGTTGCAAAT 100 35
 CT43_CH1611 NONE
 CT43_CH1612 NONE
 CT43_CH1613 NONE
 CT43_CH1614 NONE
 CT43_CH1615 1661551 .. 1661573 + -10.7  -5.03994   AGTAAATAGTAAAAA           GGAATCCAT ATGCC ATGGATTCC           TTTTTATATATGAGC 100 36
 CT43_CH1618 NONE
 CT43_CH1619 1664389 .. 1664411 +  -9.2   -5.9218   AAGAATATCACAAAA           CATGCTCTCA TCA TGAAAGCATG           TTTTTTTGTTATGTG 100 69
 CT43_CH1620 1665676 .. 1665688 +  -3.5  -3.48395   AGAAATAAATTATAA                TAAAA TAA TTTTA                TTATGTAAACAACAT  50 26
 CT43_CH1621 1666382 .. 1666407 + -13.4  -4.75472   GTCTATTTTAAATGA         GGGAAACACC ATATGG GGTGTTTCCC          TTTTATTAATATGAA 100 46
 CT43_CH1622 NONE
 CT43_CH1623 1667566 .. 1667587 + -10.9  -6.02919   TGAATAGATAAGTAA           GGAAGCAGC TTTA GTTGCTTCC            TTTTTTTATTTGTAA 100 34
 CT43_CH1627 1670150 .. 1670178 + -14.7  -5.06816   CTAATTAATATAAAA        GGAGTTCAAGGTT TTT ATCCTTGAACTCC        TTTTTGTTAAGCAAT 100 33
 CT43_CH1629 NONE
 CT43_CH1630 1673941 .. 1673966 + -14.9  -5.63103   AAGAAATAAAAGAGA         GACTGCCTAAA ACCA TTTAGGCAGTC          TTTTTTTCGTTAAGA 100 32
 CT43_CH1632 1676304 .. 1676318 +  -3.6  -4.24963   ATCAAAAGTGGTAAT               TGATAG AGA TTATCA               TTTTCAATGATTGTA  58 170
 CT43_CH1633 1676536 .. 1676583 + -18.1  -3.17486   TAGCTATATAGATTA GTAAAAGGAGAGCTGGTTACG ATTTTG TGTAACCAGCTCTTTTTTTAC TTCGTAGAAATTATT 100 38
 CT43_CH1636 1678684 .. 1678703 +  -7.9  -4.84262   GCTATAAAGTAAAAA            GGCTTCA TTCTAC TGAAGCC             TTTTATTAATTATTA  87 29
 CT43_CH1638 NONE
 CT43_CH1639 NONE
 CT43_CH1640 1682738 .. 1682771 + -15.5  -5.71712   ATGTATAAATAAAGA     TAGGGCATGCATCAT TTTT ATGATGTGTGCCCTA      TTTTTTTATGTAGAA 100 29
 CT43_CH1641 1683157 .. 1683169 +  -4.8  -2.55061   ATTACATACATGTAA                GACG ACATA CGTC                ATGTTATCGACTTGT  50 85
       nhaC2 1684611 .. 1684637 + -16.8  -6.28401   ATCATAAAATAAAAA         TCACCTTCTACA ACA TGTAGAAGGTGA         TTTTTTTATTTTTTA 100 34
        fumC 1687339 .. 1687366 +  -9.2  -5.28683   AGAGTAATAGAAAAA        GCCAGGGTTCTG AGTA TAGAATCTTGGC         TTTTTTGATGTTCAT  95 34
 CT43_CH1647 1688176 .. 1688199 +  -8.3  -5.37345   ATATAAAAAGTAAAG          GATGTTTTC TTATAC GAAAACATC           TTTTTTGTAGTTAAA 100 28
 CT43_CH1648 NONE
 CT43_CH1649 1690820 .. 1690847 +  -7.8   -5.1675   AGTTAAATAGAAAAA        TGTCCCTAAGTT ATTA GACTTAGAGACA         TTTTTTCGTAAGTGC  91 35
 CT43_CH1651 1692393 .. 1692409 +  -3.7  -3.74781   TAGGTAGTTAATTTT              CGTATAT ATC ATTTACG              TTTGACCTTTCATTT  52 62
 CT43_CH1652 NONE
 CT43_CH1653 1693715 .. 1693731 +  -6.6  -3.53444   TTTTTTTAGAATAAA              CACTAC TCATT GTAGTG              TTTCAGGGGGAATAA  65 46
       ccdA1 NONE
 CT43_CH1655 NONE
 CT43_CH1656 1695735 .. 1695765 + -13.5  -4.39828   GTCGAAAAAATAAAA       GATAGCCATGTAC AGAGA GTATATGGCTATC       TTTTATAAGCATATT 100 28
 CT43_CH1659 1697394 .. 1697426 +  -4.9  -5.17744   CTTATTTAATAAAAA      CAGGATAATCCTCAT TTT ATAAGAATCATCCTG      TTTTTATTGATATAT  79 18
        dsdA 1699475 .. 1699494 + -10.8  -5.22312   ACGGTATAAGAAAAA            TGAGGCTA GTTG TAGCCTCA             TTTTTTCATGTACAT 100 32
 CT43_CH1662 1700877 .. 1700896 + -13.6  -5.93252   ATTATATGAGAAAAA            CCTTCCGC AATT GCGGAAGG             TTTTTTATTTTTCGA 100 32
 CT43_CH1667 NONE
 CT43_CH1668 1705926 .. 1705956 +  -4.2  -5.40464   ATTCTCATGTGAAAA      GAATGAACTTCTGC ACTGA GCAG--GTTCATTC      TTTTTGTTTATAATA  77 85
 CT43_CH1669 1706967 .. 1706987 +    -4  -3.19293   AAGAAAAGGTAAAGG            GAGGTTCA TCAAT TGAACATC            TTCAATATTGCAATT  49 51
 CT43_CH1670 NONE
 CT43_CH1671 1709244 .. 1709266 + -12.1  -5.36441   TGTTTAATGTGAAAA           GGATGTGAC GTTAA GTCACATCC           TTTTTTGTATGAAGC 100 34
 CT43_CH1672 1710573 .. 1710593 + -12.6   -4.7254   TGATGAATTAGGAAA            GGGTGCCT ACAAA AGGCACCC            TTTTTGGTGGGGAAT 100 41
 CT43_CH1674 NONE
       aspA2 1714472 .. 1714490 +  -7.4  -5.64421   GAAAAATTAAAAGAA             GAGGGG GGACAAG CCCCTC             TTTTTTGTTTACAAT 100 31
        malS 1716257 .. 1716290 + -13.3  -3.18024   GGTTAGAATATAGAA     AGAAAGCCCGTTTAT AACA ATAAGCGGGCTTTCA      CTTTTACTACTGAAA 100 28
 CT43_CH1677 NONE
 CT43_CH1678 1718556 .. 1718575 +  -9.4   -5.8187   AGATAGAGTGAAGAA            GATGCTTA TAAA TAAGCATC             TTTTTTTGTTAAATC 100 30
 CT43_CH1679 1721874 .. 1721903 +  -9.4  -5.58179   ATTTAATATAAAAAA       GCTATGTCTTCA AATGTA TGAGGGCATAGC        TTTTTTGTTGTAATA 100 35
        asnA 1723827 .. 1723859 + -14.3  -5.69379   TGTTTTAATAGAAGT      GAGGGAATAGCTTAA ATA TAGAGCTATTCCCTC      TTTTTTTAATTGTGT 100 33
 CT43_CH1682 1724456 .. 1724472 +  -4.5   -4.1721   GTATAACGAATATTT              TCATTGT ATT ATAATGA              TTTTGGGATATCGGT  62 70
 CT43_CH1685 NONE
 CT43_CH1686 NONE
 CT43_CH1687 1730331 .. 1730350 +  -7.9   -5.4251   ACAGAAGTAAGAAAG            GCTTGGA TGGGTT TCCAAGC             TTTTTTATGTATGGG 100 31
 CT43_CH1690 1732294 .. 1732346 + -27.1  -2.91429   AATTAACAGAATAAG GTATATAATCAATAATCATATTAAC ATT GTTAATATGATTATTGATTATATAC TATGTGGGGGTTTTA 100 108
 CT43_CH1691 NONE
 CT43_CH1692 1734696 .. 1734712 +    -8  -5.73672   AAGCGTAAAGAAAAA              CAGGCT ATAGC AGCCTG              TTTTTTTCATTGTTT 100 33
 CT43_CH1693 1736180 .. 1736206 + -12.4  -4.87786   AAATTAAATGAAAAA         GAGGTTCTAGTT ACT GACTAGAGCCTC         TTTTTATACACTTAA 100 34
 CT43_CH1695 1738365 .. 1738382 +    -7  -5.80951   ATCCGTTTACGAAAA             CACAGG CAGCGA CCTGTG              TTTTTTATTTTACGT 100 453
 CT43_CH1696 1739688 .. 1739714 +  -9.5  -5.70829   CAATTTAATGTAAGA         GGCAACCCAGT ATGTG ATTGGGTTGTC         TTTTTTTGTACTGTT 100 33
         fsR NONE
       cysK2 1742044 .. 1742075 +  -8.9  -4.77775   TAAAAAGGATAGAAA      CACCTTAATAGTG AATAGC TGCTATTAAGGTG       TTTGTTTTATGGAAT  93 38
 CT43_CH1699 NONE
 CT43_CH1700 NONE
 CT43_CH1701 1744599 .. 1744624 + -17.7   -5.7946   ACCGCGATATTTTGT         CGTCCCTACGT ATTT ACGTAGGGACG          TTTTTTTATTAGGGA 100 483
 CT43_CH1702 1746074 .. 1746102 + -13.3  -5.52079   TTATATAAAAAGAAA        GGTAGCGTATC ATACATA GATACGCTACC        TTTTTATTTTGCTCT 100 33
 CT43_CH1704 1747409 .. 1747442 + -11.2  -5.58522   TAAATAAGAGGAAAA     GAGTCTGATTCATA TATTAC TTTGAATCAGACTC      TTTTTGTTTTATGTG 100 34
 CT43_CH1705 NONE
 CT43_CH1706 1749008 .. 1749029 +  -6.6  -5.75538   GAAATAACGAGAAAA           CCTCTAGT ATTTAA ACTGGAGG            TTTTTATTTTTTGAA 100 34
 CT43_CH1707 1750121 .. 1750155 +   -11   -4.7373   AAACTTAAATCTGCT     GAATAAGAATCTCTTT TGA AAAGGGATTCTTATTA     TTTTTCATAAAATGA 100 117
 CT43_CH1708 1750586 .. 1750612 + -10.9  -5.54403   TATCAAAAATAAAAA         CGCATCGTACT CAAAA AGCACGATGCG         TTTTTATTATTTTTT 100 156
       ilvE2 NONE
       ilvB2 NONE
 CT43_CH1713 1755819 .. 1755830 +    -3  -3.29144   AAGGAGTGTATGGAA                TATG AAAA CATA                 TTATGAAAAAGATGC  46 39
       ilvC2 NONE
        ilvD NONE
        ilvA 1760238 .. 1760261 +  -6.8   -3.9777   TTTTCCCTGTATCAT          CAATTTCTAC ATCA GTTGAAATTG           TTTGTAAATATTGAA  68 421
 CT43_CH1718 NONE
 CT43_CH1719 1763106 .. 1763128 +  -5.6  -4.77567   ATAAATAATAAGTAA           CCAACTTC ATATAGA GGAGTTGG           TTTTATTATGAAAAT  74 26
 CT43_CH1720 1764510 .. 1764534 +   -13  -5.28942   AATGAAAAAGAAAAA          GGATGAAGCA ACATG TGCTTCATCC          TTTTTCTTTAAAATC 100 48
 CT43_CH1722 1766446 .. 1766475 + -13.1  -4.30719   AATAAATGAGAAAGA       TAATCCCAAACTG TTTG TAGTTTGGGATTA        TTTATTATACAGAAA 100 32
 CT43_CH1723 1767366 .. 1767401 +  -4.3  -3.99878   TTATTTCCGTAAGCT    TCTAGGATTCTAAA TTTTTCTGC TTTAGAA-CCTAGA    TTTGCTGTTCTGTCT  60 13
 CT43_CH1724 1769084 .. 1769110 +  -8.7  -5.27335   AATTTTAGAAAAAGA         GAACGCCAACT TTTAT GGATGGCGTTC         TTTTTCTTTAAAAAA  95 89
 CT43_CH1725 NONE
 CT43_CH1726 1770076 .. 1770095 +  -3.6  -3.61517   CTTAATCTTTGATAA            GTTACTAT AATG GTGGTAAC             TTATTAAAGGGAACT  52 36
 CT43_CH1727 1771451 .. 1771482 + -18.2  -4.17701   CAAAGATAACTTTTT      TAGGCTGTGGAGAG AATC TTCTCCACAGCCTA       TTTCTAATTTGTAAA 100 32
 CT43_CH1730 1775461 .. 1775481 + -11.3  -5.03314   AATAAATACAAAAAA            CCTTACTTT TTA AAAGTAAGG            TTTTTTACACATAAA 100 36
 CT43_CH1732 1777019 .. 1777029 +  -2.6  -4.07346   AAAAATATTCATTTT                 TATA CTT TATA                 GTTTTTTTGATTTTT  53 169
 CT43_CH1733 1777960 .. 1777970 +    -4   -4.1347   TTTCTTTTATATGTC                 GTAA TTT TTAC                 TTTGTATCATTGAGA  58 44
 CT43_CH1734 NONE
 CT43_CH1735 1779759 .. 1779793 + -13.8  -5.27477   TTATAATTCAAAAGA    GAAGGCTGTCTCCAA ATAATC TTGG-GACAGCCTTC     TTTTTTCATTACCCT 100 63
 CT43_CH1737 1782557 .. 1782586 + -12.3  -5.88565   TCGTATAATAAAAAA       GGGTATTCCAAGT TTTA ATTTGGAGTACCC        TTTTTTTATTATCCA 100 48
       panE1 1785313 .. 1785340 + -10.8  -6.07374   TGAAAAAATAAAAAA        GATAGCAATATA TAAG TGTATTGCTATC         TTTTTTATTTTTTGT 100 38
 CT43_CH1741 1787763 .. 1787790 + -13.6  -5.07275   AAGAAGATTTTTGAA        GGATAGCTTCGT GAAA ATGAAGCTATCC         TTTTTGTGTATATGC 100 39
 CT43_CH1742 NONE
 CT43_CH1743 1790801 .. 1790826 + -14.1  -4.39889   GATGAATGATTTGAA         GCTCCTGTTCA GTTG TGAGCAGGAGC          TTTTGATATCCTTAT 100 72
 CT43_CH1744 1791939 .. 1791965 +  -6.7  -5.70829   GAAGGTGTGGCAAAG         TAAACAGTGGA CTAGT TCTGCTGTTTA         TTTTTTTATCCTGTT 100 23
 CT43_CH1746 NONE
 CT43_CH1747 1796462 .. 1796472 +  -3.2  -3.13504   CGGTGCAACTATATA                 GGTG TTT CATC                 TGCTTTTGCTCAGGC  45 90
 CT43_CH1748 1797964 .. 1797976 +  -3.5  -4.29829   CTTGTATTTATTACA                TTAAA GAA TTTAA                TTTCTTCATCGTTAT  59 79
 CT43_CH1750 NONE
 CT43_CH1751 1799613 .. 1799634 +  -7.4  -5.03314   CTCTATATAAAAAAA           CACAGTTT ACACTC AAACTGTG            TTTTTTCGACGTACA  88 193
 CT43_CH1754 1802286 .. 1802298 +  -4.1  -5.47218   TTCAGTTAAATAAAA                TTCGG TAG TCGAA                TTTTTTTGCATAAAG  77 220
 CT43_CH1755 1803321 .. 1803362 + -22.1  -4.87592   CAAAAAGGTTAGAAA TAAAAGGAGTTCTCAAAAT GTTA ATTTTGAGAACTCCTTTTA  TTTTGTTATGTATGA 100 29
        deoC 1804307 .. 1804349 + -18.2  -2.71144   CTAATCGATAAAAGC TTAAAGCAATAGATATACGT TTA AAGTATATCTATTGCTTTAA TAATTGAAAAAAATG 100 37
 CT43_CH1757 1805565 .. 1805579 +  -2.2   -2.5844   GCAACGATCGTTGGC               TTATTA TTT TAATAG               ATTCATATCATATAA  39 14
        pyn1 NONE
        cdd1 1807352 .. 1807382 + -16.4  -5.54885   AAAATAAGTTAAAAA       GCCATTTTGCAATT ATT AATTGCAGAATGGC       TTTTTTGTTCATATT 100 34
 CT43_CH1760 1808005 .. 1808048 + -19.2   -3.9504   AATTAGAAAAGACAA TAAACAGAGCTGGAATTTCT ATAT AGGAAATCCAGCTCTGTTTA TGTTTTATTGAAATT 100 0
 CT43_CH1762 1809501 .. 1809528 + -10.1  -4.39002   TTTTAATTAGTAAAA        TAAATAGACAC CTGTGA GTGTCTATTTA         TTTTATGAAAAATTT  93 57
 CT43_CH1764 1811275 .. 1811315 +   -10  -3.07895   AAATGAATATAATAT  TACAAAAGATAAGCTC ATTTCACTA GAGCCTATCTTTTGTA  TGTATTACCAATAAA  81 35
 CT43_CH1767 1814565 .. 1814619 + -13.2  -4.64676   ATCACTAATTTATTT GAACTTTATCTCGAATCGTGGA CAATTAAAAAA TCCATGATTCGGGATAGGGTTC TTTTCTTCGAAATAC 100 51
 CT43_CH1769 1817279 .. 1817301 + -12.8  -4.06335   CCAGAATAATAGGAA           GCAGTTATCC TTT GGATAGCTGC           TTATTCATTTTTGTT 100 32
       topB2 1820353 .. 1820388 + -14.3  -4.35474   TGAGAATTAATTTGT    TAAAAGAGCATGACA TAAAAC TGTCATGCTCTTTTG     TTATTCTTTTATTTA 100 31
 CT43_CH1772 1821950 .. 1821993 + -20.8   -3.1916   TTGTATGTAATCTTT C-CATAATAAAAAACGTCCCA AAA TGGGACGTTTTTTATTATGCG TATTGCCGTTTTTTC 100 176
 CT43_CH1774 1823948 .. 1823993 + -12.1  -4.87626   TTTAATTTATGATAG TAAATCGAAAAACCAACATGG ATGA CCGTGTTGGTTTTTCAGTCTA TTTTTCATGTTAAAA 100 36
 CT43_CH1775 1825543 .. 1825565 +  -7.9  -5.85737   AGGTTAAATAAAAAA           GTTATAGAA CTTGT TTCTATAAC           TTTTTTTGTTACTAT 100 34
 CT43_CH1776 1826058 .. 1826081 +   -14   -5.4433   GGGTATTTTTAAAAA          GGTGTTACGT AATA ACGTAACACC           TTTTTATTTATGTAT 100 46
 CT43_CH1777 NONE
 CT43_CH1778 NONE
 CT43_CH1779 1828675 .. 1828713 + -23.5  -4.62772   TCGTAAAAAGTAAGA   CGTAAGAAAGAGCCTAC AAACA GTAGGCTCTTTCTTACG   TTTATTTCATTTCAA 100 28
 CT43_CH1781 1830594 .. 1830619 +  -6.3  -5.04222   GCAGAATAAAAAGAG         GTGTCTCAT-AT GTC ATAATGGGACAC         TTTTTAATTTACTTA  82 32
 CT43_CH1782 1831137 .. 1831149 +  -3.5  -4.48967   GAAAAAATGAATGCT                TAAAT AAT ATTTA                TATTTTTTTATCATT  61 23
 CT43_CH1783 1831838 .. 1831857 +  -2.2   -2.8237   TTGAAGGTATGCAAT            GTAATA-CC GAT GGATATTGC            TAATTCGCTTGTTAT  41 3
 CT43_CH1784 1832543 .. 1832568 + -10.5  -5.32882   AATATGTAACGATAA         GGAAGCTGTGT TTAA AAACAGCTTCC          TTTTTTGTAGTGGTG 100 48
 CT43_CH1785 1832785 .. 1832796 +    -3  -5.95539   AAGAAGTAATTAGAT                TGAA ATCT TTCA                 TTTTTTTATTTAGCA  85 32
 CT43_CH1786 1833960 .. 1833986 +   -11  -5.13473   TTCTCCAAAAGTGTT         CATGCCTTTAGT ATA AATAAAGGCATG         TTTTTTAACTATAGT 100 463
 CT43_CH1787 NONE
 CT43_CH1788 1835653 .. 1835690 + -18.7  -2.59927   GCTAACTGTTAAAAG   AGAAATGCCACTACACT TTCG AGTGTAGTGGCATTTCG    TACGTTATAGAGGTT 100 36
 CT43_CH1789 1835932 .. 1835952 +  -5.4  -5.37865   ATTGCAACAAAAAAA            GGAATAGC ATCTG GCTAATCC            TTTTTTACTTATTGC  84 19
 CT43_CH1791 NONE
 CT43_CH1792 1837361 .. 1837375 +  -3.6  -3.15027   TTCCTTGCTTTCGTT               TCTTTT CAT AAAAGG               CTTTTAATACAGGGT  48 363
 CT43_CH1794 NONE
 CT43_CH1795 NONE
 CT43_CH1796 NONE
 CT43_CH1797 NONE
 CT43_CH1798 NONE
 CT43_CH1799 NONE
 CT43_CH1800 NONE
 CT43_CH1801 NONE
 CT43_CH1802 NONE
 CT43_CH1803 1844454 .. 1844467 +  -3.8  -3.01791   AACATCCGAATAAGA               GGTG CTAGTA CACC                TCTTAAGGCGGCAAT  48 46
 CT43_CH1804 NONE
 CT43_CH1805 NONE
 CT43_CH1806 NONE
 CT43_CH1807 NONE
        polA NONE
 CT43_CH1809 NONE
 CT43_CH1810 NONE
 CT43_CH1811 NONE
 CT43_CH1812 NONE
 CT43_CH1813 NONE
 CT43_CH1814 1854597 .. 1854607 +  -2.4  -3.14132   ATCAATCATGATCGT                 CAGG CAT CCGG                 TTACTAAAAGGAGGC  43 8
 CT43_CH1815 1855571 .. 1855586 +  -4.8  -3.96705   CATGGTATTGAAGAT              TTTGAT GAAA ATCAAA               TTTGAATTTTATAAG  62 191
 CT43_CH1816 NONE
 CT43_CH1817 NONE
 CT43_CH1818 1857348 .. 1857369 +  -3.7  -3.01712   TTTGAATTAAAAAGA           GCACCAT TAGAGAGT GTGGTGC            TCTTAGACCAAGAAC  46 53
 CT43_CH1819 1858081 .. 1858091 +  -2.6  -3.72576   TAATTTGAAATTTAA                 TAAA ATC TTTA                 TTTGATAGGAGGAGA  48 47
 CT43_CH1820 1858588 .. 1858612 +  -7.1  -3.96148   TATTAAAATGATAAA          GCAGCTAGCTC AAT GAACTAACTGC          TTTATCGTCCAACAA  74 335
 CT43_CH1821 NONE
 CT43_CH1822 1860548 .. 1860559 +    -3  -4.63218   TACAAATAGTGTCTC                CATA TTTT TATG                 TTTTATTCGAAAGAG  62 107
 CT43_CH1823 NONE
 CT43_CH1824 NONE
 CT43_CH1825 NONE
 CT43_CH1826 NONE
 CT43_CH1827 NONE
 CT43_CH1828 1862864 .. 1862874 +  -2.4    -3.767   TAGGAGGAGAAATTC                 CAGC TAC GCAG                 TTTGATACGTGGCTG  51 77
 CT43_CH1829 NONE
 CT43_CH1830 NONE
 CT43_CH1831 1864216 .. 1864230 +  -5.8  -3.33037   TTATTAATAGTTATA               TAGTAT GTA ATACTA               TTAATGGTTTAAGGT  59 213
 CT43_CH1832 1865778 .. 1865802 + -10.8  -5.19879   ATATACGAATTTCAA          GGCAATCGAT ACTAA ATCGGTTGCC          TTTTTCTATTTCACG 100 164
 CT43_CH1833 NONE
 CT43_CH1834 NONE
 CT43_CH1835 NONE
 CT43_CH1836 1870374 .. 1870394 +  -4.7  -5.37593   CGAAGAAATAACGGA            TCGTTGATT AAA AGTCAGCGG            TTTTTTAATTTAAAA  82 30
 CT43_CH1837 1871557 .. 1871574 +  -7.7  -5.63645   AACAATGGCTTAAAA             GGTAGCG TGTA TGCTACC              TTTTTTGTATTTTGA 100 28
 CT43_CH1838 NONE
 CT43_CH1839 NONE
 CT43_CH1840 NONE
 CT43_CH1841 1873384 .. 1873399 +  -2.6  -2.96444   TTGTAAAGAGGGTGA              TTTGAT GAGA ATCAGA               GTTGTTGTTAAAGGA  42 21
 CT43_CH1842 NONE
 CT43_CH1843 NONE
 CT43_CH1844 NONE
 CT43_CH1845 NONE
 CT43_CH1846 1875278 .. 1875293 +  -4.7  -5.79595   TTGAGATTTGAATAA              GCGTT CATATA AACGC               TTTTTTATTTTGAAC  90 41
 CT43_CH1847 1875784 .. 1875794 +  -2.4  -3.65991   GCGTATTAGTCTCAA                 GGAG TAT CACC                 TTATGTTGAACGGAT  48 102
 CT43_CH1848 NONE
 CT43_CH1849 NONE
 CT43_CH1850 NONE
 CT43_CH1851 NONE
 CT43_CH1852 1886918 .. 1886937 +  -8.6  -5.45802   CAATTCATCAATCAA            GAGGAGTG ATTT CACTTCTC             TTTTTATTTTGAGGA 100 80
        xerD NONE
 CT43_CH1854 NONE
 CT43_CH1855 1889209 .. 1889236 + -15.6  -5.20606   TAGTAGTTTCATTAA        CAAGAGCCGCCC ATTA GGACGGCTCTTG         TTTTTATTAGTATTT 100 38
 CT43_CH1860 NONE
 CT43_CH1861 NONE
 CT43_CH1862 1892873 .. 1892883 +  -5.4  -2.87931   TAAAGAGCAACTATA                 TCCT TTA AGGA                 TATATAAGGAGTGAA  53 110
 CT43_CH1863 NONE
 CT43_CH1864 1894644 .. 1894660 +  -2.3   -3.1739   TTATGTGGTTCCAGG              TGTTTCA TGA TGAAAAA              TTACTGGACTCGTGT  42 16
 CT43_CH1865 NONE
 CT43_CH1866 1895528 .. 1895547 +  -7.9   -4.7629   ATATATTTTTATTTT            GACGACT GTAGAA AGTCGTC             TTTTTACATTGGTAA  87 236
 CT43_CH1867 1896812 .. 1896828 +  -9.5  -2.53015   GTAAAAGTCATGTAT              TTGTTCC ATC GGAACAA              TCCCTTCAGGCGTAT  71 514
 CT43_CH1869 1898937 .. 1898966 +  -7.9  -2.79188   CAGAAACGACGGGAT       C-GATTGTTGCACC AGC GGCGCAGCAATCAG       TAGTTGGGTTACGTC  66 195
 CT43_CH1870 NONE
 CT43_CH1871 NONE
 CT43_CH1872 1900757 .. 1900770 +  -2.3  -3.65529   AATAGTCATAAGCCA               CCTTC TACA GATGG                TTTGCGTAAGCCTGT  47 114
 CT43_CH1873 1902065 .. 1902087 +   -10  -3.40134   GAGCATTTTCTTTTT           CATGTTTTCG AAT TGAAAACATG           TATTTGGCATGCTTT  84 80
 CT43_CH1874 1902681 .. 1902704 +  -9.7   -5.1485   AATTAAGATAAAAAA          GCAATCCAA AATAAA TTGGATTGC           TTTTTATCTTAATTA 100 77
 CT43_CH1876 NONE
 CT43_CH1877 NONE
 CT43_CH1878 1906337 .. 1906360 + -11.2  -5.01497   TAATTAAGGGGAAAA          GACTAACTTA AAAA TAAGTTAGTC           TTTTTGTATGGTCAT 100 34
 CT43_CH1879 1907827 .. 1907859 + -15.1  -4.51743   GAATTTTCTGTTGTT      TTTGTATAAAGAGGG GGA CCCTCTTTATACATA      TTTCTTTCATACTCA 100 44
 CT43_CH1880 NONE
 CT43_CH1881 NONE
 CT43_CH1882 1910273 .. 1910286 +  -3.1  -3.28256   TTAAAGTATACTTCG               GAGTA TGTA TGCTC                ATTTGTTTAAGTGTA  46 67
 CT43_CH1883 1911261 .. 1911288 +  -7.8  -5.45802   TATACAAAATAAAAA        TCCCTCTTTTAT ATTC GTTAAAGAGGGA         TTTTTATTTTGAAAA 100 52
 CT43_CH1885 1912775 .. 1912787 +  -4.9  -4.90002   ATGAGATTTTACACA                TTTCA CGA TGAAA                TTTTGTTGTATATTA  72 15
 CT43_CH1886 NONE
 CT43_CH1887 1913564 .. 1913611 + -21.2  -3.90586   ATGAAAAGTTAAGAA TAATGATAAGTAAGAATTCATG TTTA TATGAATTCTTACTTATCATTA TTTATGCAATACTCT 100 29
 CT43_CH1888 NONE
 CT43_CH1889 1915342 .. 1915364 +  -9.9  -6.08342   AAATAAATAAAAAAA           CTGGGAGTC TAATT GACTCTCAG           TTTTTTTATTTGTTA 100 35
       cydA1 NONE
       cydB1 NONE
 CT43_CH1892 NONE
 CT43_CH1893 1921799 .. 1921822 +  -7.4  -6.11243   CAATAATTGTAAAAA          TAGCTACGCC TAAT GGTGAAGCTA           TTTTTTTTGTTAGAT 100 51
 CT43_CH1894 NONE
 CT43_CH1895 NONE
 CT43_CH1896 NONE
 CT43_CH1897 NONE
 CT43_CH1898 NONE
 CT43_CH1899 1928414 .. 1928436 + -16.4  -5.30348   GGTCAATAACAAAAA           GCTCCGTTTG TTA CAAACGGAGC           TTTTTGTTATTGGAT 100 32
 CT43_CH1903 1931457 .. 1931497 + -14.4  -5.49568   TCGCTACATAAGTAA GACTGTTTGTTGTTA-CTA ATTT TAGATAACAACAAACGGTC  TTTTTATTTTAACTT 100 63
 CT43_CH1904 1932284 .. 1932310 + -12.4  -5.28778   AATAATTTGATAAAA         GGTGAACAGG AATATAA CCTGTTCACC         TTTTTTATACGTAAT 100 41
 CT43_CH1906 1933025 .. 1933041 +  -8.1   -2.9914   CACGGATTTCACTTT              GTTCATT TAA AATGAAC              TCTGTGTGAAAAATA  70 68
 CT43_CH1907 1934502 .. 1934527 + -14.1  -5.02439   TTCGTATAGAGAAAA         GGCTTTCCAAG GAAA CTTGGGAAGCC          TTTTTATAATTGTAT 100 63
 CT43_CH1909 1937324 .. 1937334 +  -2.6  -3.11316   ATTAAAGAGGGTGCA                 TTTT AAA AAAA                 TATATTAGATGCTAA  43 20
 CT43_CH1910 NONE
 CT43_CH1911 1939101 .. 1939158 + -19.7  -2.66326   TTGTGTGTATTCTTA ATTATGAAGAAAAATAGTGTTAGAAGG AGAG CCTTCTAACACTATTTTTCTTTAAAAA TGCATTTACCGTTAC 100 9
        fabG 1940663 .. 1940708 + -12.1  -5.47159   AGTAAATTTAACTTT AAAAGAAGGGATATCTATTCT GTAA GGGGTAGATGTCCCTTCTTTA TTTTTTGTATTCGAG 100 43
 CT43_CH1914 1941516 .. 1941530 +    -5  -3.09635   AAATTATAACATGTA               TCTTGT ATA ACGAGA               TTAGCTCGTGGGCCT  52 77
 CT43_CH1915 1942484 .. 1942512 + -14.8  -5.38958   AATAATAGTAAGCAG        TAAGACTGTCCT AATTA AGGACAGTCTTA        TTTTTGTTTATGAAT 100 39
 CT43_CH1916 NONE
 CT43_CH1917 1943837 .. 1943870 +    -6  -4.99645   AACAATAATAAAAAA     TAGGACTCTACGCA ATATTA TGCTAGGAGTCCTA      TTTTATTTATAAACT  80 33
 CT43_CH1920 1945655 .. 1945685 + -10.5  -6.15536   GTGGAACCACGAAAA       CACATTCGTCCCT TTCCT AGGGATGGGTGTG       TTTTTTTTATTACTT 100 475
        hom1 NONE
        thrC NONE
        thrB 1949064 .. 1949086 + -12.8  -3.75153   ATATTGGATCGTAAA           GAAAGCTGGC ATG GCTAGCTTTC           TTTACGTTGCAAACC 100 27
 CT43_CH1924 1949524 .. 1949554 + -14.2  -5.03145   AACTTTTAATACTCC       AAATAGAGCTAGCA AAA TGCTAGCTCTATTA       TTTTTTGCCACATTC 100 144
 CT43_CH1925 1952143 .. 1952160 +  -8.5  -3.14211   GGGTTTAAGTAGTAA             CCTTACA AAAT TGTAAGG              TTACTGAAAGGAAAT  72 252
 CT43_CH1926 1953247 .. 1953264 +  -9.9  -6.09133   CGAATAATAAAAAAA             GATTGGC TTTT GCCAATC              TTTTTTTTTGGAATG 100 34
 CT43_CH1927 NONE
 CT43_CH1928 NONE
 CT43_CH1929 NONE
 CT43_CH1930 NONE
 CT43_CH1931 1958328 .. 1958359 +    -6  -5.16572   AAGTGTAATAAAAAG      CCGGAGAAACAT AGTTATAA ATGTTTTTTCGG       TTTTTTACGTTAAAT  83 52
 CT43_CH1932 1959155 .. 1959173 +  -7.5  -5.67283   AATTGTGATAAAAAA             GAGTGAA GTGAA TTCACTC             TTTTTTATTTGGATT 100 39
 CT43_CH1933 1959809 .. 1959834 +   -12  -4.88405   ACTTTATGTTTGAAA         GAGGTATACC AATTAA GGTATACCTC          TTTTGTTTAACCATT 100 58
        asbA NONE
        asbB NONE
        asbC NONE
        asbD NONE
        asbE NONE
        asbF 1967199 .. 1967217 +  -6.7   -5.9873   TGTGAAATGATGTGA             GAGTCTC GTTTA GAGGCTC             TTTTTTTTATGGTAA 100 41
 CT43_CH1940 1967533 .. 1967554 + -11.7  -6.15259   TAGAAGGTTATAGGA           GAAAGGAAG GATT CTTCCTTTC            TTTTTTTTTCAATTA 100 44
 CT43_CH1941 1968983 .. 1969027 + -13.1  -2.60723   CCTACTTCATAATTT GTAAGAGAATTGCATGATGTT TTG AGTAACATGCAATTCTCTTTC GTTCATTAAGAATAA 100 29
 CT43_CH1943 NONE
 CT43_CH1944 1971405 .. 1971461 + -17.9  -3.66028   CAATGTACGAGATTA TATAATAATAAATAAGCCTAGTAATAT AAG AAATTACTAGGCTTATTTATTATTAAG TTGTTAAACGTTCTC 100 42
 CT43_CH1947 1973685 .. 1973709 + -14.5  -5.00642   ATGCTAATGAAAAAA          GGTTGTTCTTT TAA AAAGAACAACC          TTTTTATGTGAATTA 100 34
 CT43_CH1948 1974999 .. 1975019 +  -9.8  -5.28414   TTAAGCAATGAGAAA            GAGCATCT GTAAA AGATGCTC            TTTTTATATTTGTTG 100 37
 CT43_CH1949 NONE
 CT43_CH1950 1975783 .. 1975832 + -13.4  -4.41616   GTAGGGGTATATCGT TAACATATAAAAAAGAAGCTAA ATGAGA TTAGCTTCTTTTTTATGTTTTA TTTATTTCCACCAAT 100 23
 CT43_CH1952 NONE
 CT43_CH1953 1979261 .. 1979287 + -10.3  -4.47217   TCTTTTAAAAGACTG         TAAGAGGACCA TTAAT TGGTTCTCTTA         TTTTGGTTAGTAGTT  95 76
 CT43_CH1954 1980433 .. 1980482 + -27.1  -2.90941   TTTATTAAAAGAATA GCCATATTAAAAAACATCTCATA TGAA TATGAGATGTTTTTTAATATGGC TCTGTCGCATGTAAT 100 25
 CT43_CH1956 1981829 .. 1981848 +  -9.3  -4.03234   AGAAGATTAGTGAAA            CAGAGGG ATAGTA CCCTCTG             TTTATATAAGGAGAA  85 31
 CT43_CH1957 1983315 .. 1983357 +   -21  -3.54146   GAAAAATGTTGTAAT AAAAAGCACTGTTTTAGCTA ATG TAGCTAAAACAGTGCTTTTC TCTTTGATTGAACAG 100 294
 CT43_CH1960 1984903 .. 1984913 +    -4  -2.80098   TAGGGAGGATATCAA                 TTTG AAT CAAA                 ATATTTTAGAATCGT  47 207
        rsgA 1985957 .. 1985975 +  -9.6  -5.59879   AAAAAAATGTAAAAA             CCAAAGGG TGC CCTTTTGG             TTTTTTCTATTTGTA 100 29
 CT43_CH1962 1988145 .. 1988187 + -18.6  -4.84311   AAGTTTAATAGAGAA CAGACTATCCCCTAGTAGCA TTA TGCCACTAGAGGGTAGTCTG TTTTATTGTGTAAAA 100 33
 CT43_CH1963 1988641 .. 1988664 +  -7.4  -5.73978   GGGAAGTTCTTTTAA          GGGGAGTGGT ATAA GTCACTCTCC           TTTTTTATTTGTGGT 100 26
 CT43_CH1964 1989330 .. 1989367 + -17.4  -5.11937   ATGATTGTGAATGAG   CATAAAAAAGCATCCA ATAACA TGGATGCTTTTTTATG    TTTTTTGAAGTTGTT 100 27
        dps1 1991098 .. 1991144 + -12.7  -4.91084   AAATAACGATAAAAA ATATAAAGAAACCCATTGAAA AATTA TTTCAATGGGTTTTTTTATGA TTTTTCAGTTTTCTT 100 35
 CT43_CH1967 1991660 .. 1991683 +  -5.4  -6.08342   GGTAAACGTAATGAA          AACAACAATA CATA TATTGTTGTC           TTTTTTTGTTTGTTA  95 36
 CT43_CH1968 1992830 .. 1992855 + -14.9   -4.6902   AAGTAGTAAGAAAAA         GAGATGCATCA TATG TGATGCATCTC          TTTTTAGAGTTATAA 100 35
 CT43_CH1971 NONE
 CT43_CH1972 1996462 .. 1996487 +   -12  -4.93318   AATACATATGAAAAA         GAAGAGCTGT AAGAAA ACAGCTCTTC          TTTTTATGCATTATG 100 14
 CT43_CH1974 1998513 .. 1998537 +  -7.2   -4.8543   GAAGAGTGTGTGAAA          TAAGTCTGCG TAAAT TGCAGGCTTA          TTTTTATGAGCATTC  86 23
 CT43_CH1977 2000601 .. 2000632 + -15.4  -3.41602   GAGAAAAAAGAGTGA      GTAAAGCACTATGC GTAC GCATAGTGTTTTAC       TTGTGGTAAAATAAG 100 26
 CT43_CH1978 2001373 .. 2001411 + -19.3   -3.3287   ATTACAACGATAGAA   TAAATAAAACCGAGAAG AATGA CTTCTCGGTTTTATTTA   TTCGTATGAATTTTT 100 23
        ogt1 2002915 .. 2002929 +  -2.9  -3.12668   CAAATAGTCGAAATC               CAATT TCAAT AATTG               TTCCATGTCACCGTG  45 107
 CT43_CH1981 NONE
 CT43_CH1982 2005797 .. 2005828 +   -14  -4.03234   AAAAAAATAGTATAA      TAAAAGATGAGTGA ATTT TCGCTCATCTTTTA       TTTGTATAAGGAGGA 100 31
       fosB1 NONE
 CT43_CH1984 NONE
 CT43_CH1985 2007462 .. 2007476 +  -8.5  -5.11613   AATAAATGTAAAAAA               GGCCG CAAAA CGGCC               TTTTTTGGGTGGTAT  95 36
        cotH 2009342 .. 2009364 +  -7.8   -6.0427   GGATTAATTTTGAAA           GAGATTGAAA CGT TATCAATCTC           TTTTTTTTGTATAAT 100 34
 CT43_CH1988 2010095 .. 2010108 +  -3.7  -4.10164   TAAAATGAAGATATT               GGCAG ATTG CAGCC                TTTATGTAATAATGG  56 65
 CT43_CH1989 2010764 .. 2010783 +  -7.2  -6.11392   AAGCAGCGCGTTAAA            GTCAATGA TTTT TCATTGGC             TTTTTTTGTTTGTTT 100 27
 CT43_CH1990 2012248 .. 2012265 +  -7.7   -5.1634   AACATAAGCTTTTAA             GGCAGAG AGCA CTCTGTC              TTTTTCTATGTTTAT  91 34
 CT43_CH1991 2013525 .. 2013562 + -20.1  -5.21709   TTTAACGATAAAAAA   GCTGCTCTAGCATAGTT ATAT AACTACGCTAGAGCAGC    TTTTTTGCTATGAAA 100 36
 CT43_CH1992 2014612 .. 2014626 +  -3.6  -3.29576   GATGGGGTGGTAGGT               TATGTT TCG AGCATA               TATATTATTAGGTTT  48 28
 CT43_CH1993 2015472 .. 2015494 +  -8.5  -5.26316   AATATGTATTTAGAG           GAGCCGATT GATAA AATCGGTTC           TTTTTTGTGGACTAA  95 15
 CT43_CH1994 2016160 .. 2016200 + -11.4  -5.14965   GGAAATGGTTTTAAA ATG-AAAAGCGGACACCTA AAAA TAGGTGTCCGCTTTTATAG  TTTTTTCATCCACAT 100 77
 CT43_CH1995 2017691 .. 2017715 +  -3.6  -3.17941   CCTAGAGAAGGGAGG          CACTTTCATG GATTG TATGAAAGAG          TTAATGAGATATAGT  46 50
 CT43_CH1996 2018161 .. 2018186 +  -7.6  -5.72616   AGTTTGCATGAGAAA         CTAAGGCGGA ATGGTA TGCGCCTTAG          TTTTTTTATGTCCAT 100 30
 CT43_CH1997 2018573 .. 2018596 +  -8.2  -5.56673   TAAAGTAATAATAAA          GCTTCCTC TCATATAT GAGGAAGC           TTTTTTGTTGTAAAT 100 38
 CT43_CH1998 2019293 .. 2019306 +  -8.1  -2.74741   CATATTAAAAAACCA               TCCCG AAGT CGGGA                TGGTTAAAATATGAT  67 33
 CT43_CH2002 NONE
 CT43_CH2003 2023788 .. 2023798 +  -2.6  -5.61596   TTCAGAAAAATAAAA                 TAAA TTA TTTA                 TTTTTTTCTGAAAAT  75 128
 CT43_CH2004 2024514 .. 2024546 + -14.4  -3.67052   CGATAGAGTAACATA      CAAAAGCCATCTAA TTATC TTGGATGGCTTTTG      TTATGTTACGCGTGT 100 30
       brnQ4 2026290 .. 2026311 + -13.1  -5.40072   AAGTGAATTACAAAA           GAAAGGTGC TTAG GCACCTTTC            TTTTTTTGAAGGGGA 100 13
        csaA NONE
 CT43_CH2007 2027573 .. 2027583 +    -4  -3.22777   TGAGACATAAGTAGG                 TACA ACG TGTA                 TGTTCCTATATACGC  48 354
      spoIIP 2029131 .. 2029149 +    -6  -5.50925   TCAATCTTGGAAAAG             CGTAAGTG TAA TGCTTACG             TTTTTTGTGTTGGTT  86 90
 CT43_CH2010 NONE
 CT43_CH2011 NONE
 CT43_CH2012 2031060 .. 2031093 + -13.4  -5.61881   TGTAAAGTAATAAAA     TAGTCTGAAGCGAA AGTTCA TTCGTTTCAGACTA      TTTTTATTTTTCGGG 100 31
 CT43_CH2013 2032721 .. 2032751 + -13.5   -4.3534   CATGAATAGAATAAA       TAAAAAGGACAGG GAATG CCTGTCCTTTTTG       TTTTAGTGATTAAAG 100 36
 CT43_CH2015 2034758 .. 2034776 +  -4.5  -3.64283   ACAATTAAAATTATT             CCTCAGC AAAAA GTTGGGG             TTGTTGAAAGATTTG  56 103
 CT43_CH2016 2035663 .. 2035684 + -11.7  -5.65177   AATAAAAGTGAGGAA           GAGAAATGG GATA CCATTTCTC            TTTTTTTGTGCGTAT 100 36
 CT43_CH2017 2036787 .. 2036804 +  -9.1  -5.46706   AAAGTGAATGGATGA             GGGACGG AAGA CCGTTCC              TTTTTATTTTGAAAT 100 26
 CT43_CH2018 NONE
 CT43_CH2019 2038277 .. 2038295 +  -3.9   -5.7946   AGTCAGTGTGAAAAA             TCCTGTT TTAAT AATAGGA             TTTTTTTGTTCAACA  86 52
 CT43_CH2020 2038943 .. 2038975 + -10.2  -3.60006   TTAGGAGAAGGTAGG      TAAATAAGTTGATT ATGAA GATCAACTTATTTA      TTTGGACATATAATT  86 23
 CT43_CH2021 2040547 .. 2040562 +  -4.7  -3.02829   CTTCAATCATCGTTT              GTTGC ATTTGA GCAAC               TGTTACGGGCGTATG  52 249
        dal2 2042137 .. 2042155 +  -7.5  -6.20267   TATATTAAGAAAAAA             CTGAATC ATTTA GATTCAG             TTTTTTTATTTTTGG 100 22
 CT43_CH2027 2046275 .. 2046301 +  -6.7  -4.06384   ACTAGATGTTAAAAA         CACACTTAC TTTTAATTT GTAAGTGTG         TTTCTAGTATTACGC  71 36
 CT43_CH2028 2047297 .. 2047332 + -14.3  -5.92399   GGTGAATAACTAGAA    GAAGGCTG-TCCAAAA AGTTA TTTTGGAACAGCCTTC    TTTTTTATTTTGTTG 100 32
 CT43_CH2030 2049352 .. 2049395 + -14.2   -5.2166   AAGAATTATAAAAAA TAAGAAGAAGTTGTCCCGCAA AAG TTG-GGAACAGCTTCTTCTTA TTTTTTAAGTTATTA 100 30
 CT43_CH2031 2050622 .. 2050642 +  -6.9  -5.49234   TTGCTTGAGCTGAAA            TAGGAGG GATGTAA CCTCCTA            TTTTTTATTGCCTAT  93 23
 CT43_CH2033 NONE
 CT43_CH2034 NONE
 CT43_CH2035 NONE
 CT43_CH2036 NONE
 CT43_CH2037 2053922 .. 2053948 + -15.4  -2.61912   GAAAATGAGTATGTA         TAAAAGCCGATT TTA AATCGGCTTTTA         ATTATCGATACATCG 100 81
 CT43_CH2038 2054122 .. 2054137 +  -2.6  -3.33696   AAGTTTGAAAAAGGA              TAG-GGA TAA TCCACTA              TTAATTAGGAAAAGA  44 43
 CT43_CH2039 2054504 .. 2054518 +  -2.8  -4.08692   CGGAATATAGTTCGC               GCAAGT ATG AATTGC               TTTTAGAGAAAATTG  53 110
 CT43_CH2040 NONE
 CT43_CH2041 NONE
 CT43_CH2042 2055464 .. 2055485 +  -8.7  -4.22338   AATCGTTTTACTTGG           GAGGTGACC TACT GGTTGCCTC            TTTTAACGTTATGCT  87 89
 CT43_CH2043 2056000 .. 2056012 +  -7.7  -3.78934   TCGTTTATAAATACG                TCCAG CAG CTGGA                TTGTTATAAAACAAA  72 295
 CT43_CH2045 2057290 .. 2057309 + -13.6  -5.58179   GAAATCCTTTAAAAA            CGCCTGCT TATG AGCAGGCG             TTTTTTCTTGTAATC 100 29
 CT43_CH2046 2058217 .. 2058258 + -10.5  -3.53811   GTGGCAATGGGTTGT TGACTAAGAAAACTTGGC GCATGAA GTCAAGTTTTCTT-GTCA TTTGAAAGGAGTACA  85 19
 CT43_CH2047 2058586 .. 2058607 +  -8.1  -6.02345   TTTTGTTTCAGAGAA           GACTTTCTA GTAA TAGAAGGTC            TTTTTTTTATGCTTA 100 16
 CT43_CH2048 2058879 .. 2058901 +   -15  -5.40474   TGCATCATGAATAAA           CACACCAAGT ATA ACTTGGTGTG           TTTTTTTAAAACGCT 100 27
 CT43_CH2050 NONE
         fhs 2062091 .. 2062118 +  -9.8  -5.00884   CTATATATACATCAA        GTGGCGCCTTTC CATC GAAAGGCGCCTG         TTTTTTGGAGGAAAT 100 72
 CT43_CH2052 NONE
 CT43_CH2053 2063863 .. 2063886 + -10.4  -5.64421   ATAAATGATGGAGAA          GGCGTAACTA TTTG TAGTTACGTC           TTTTTTATTTGCAAT 100 37
 CT43_CH2054 NONE
 CT43_CH2055 2065309 .. 2065333 + -14.4  -3.24289   ATTGCTATGTGAAAA          TCCCCCTCAA ATATA TTGAGGGGGA          TTAAATCTTTGAAGT 100 45
 CT43_CH2058 NONE
 CT43_CH2059 2068461 .. 2068482 +  -9.5  -4.67607   GAGATAAGTAAAAAA           GCTCAAAGC TTTA GTTTTGAGC            TTTCTTTATTAAAAG  93 34
        bsaA 2071034 .. 2071075 + -16.2  -3.61371   AGTTTCACTTTATTA AAAAACGTCTCAAAGAAC AATGTA GTTCTTTGAGACGTTTTC  TTTAAACTCAAATTT 100 46
        narG NONE
        narH 2081134 .. 2081144 +    -4  -4.20516   AGGTGGTCCAGGCTC                 TTGT ATG ACAA                 TTTCTTAAATAAAGG  60 7
        narJ NONE
        narI 2082450 .. 2082473 +    -6  -5.30616   GCAGCTAAAACGAAA          CGAGGTCT CATATGGC AGGCCTCG           TTTTTGTTTACATAG  83 66
       narA1 2084589 .. 2084604 +    -4  -2.57132   ATAGTGAAAGGCGGA              GTTCTT ATGC AAGAGC               GTTATGCAAGACAAG  45 37
 CT43_CH2073 NONE
       moeA1 NONE
       moaE1 NONE
       moaD1 2087665 .. 2087681 +  -5.8  -3.68798   GTCGTAGCAATGATT              CCGCCA GTAAG TGGTGG              TTGATTCTTTTCAGC  62 5
        narK 2088946 .. 2088975 + -12.3  -4.91511   ATTAATAAGGAAAAA       GAACTGTCCCAAA GTAT TTTGGGATGGTTC        TTTTTGTAATAGGCT 100 36
 CT43_CH2078 2090748 .. 2090759 +    -3  -3.53012   TAAATCTTTAAAGCA                TCTA CATA TAGA                 TTTGCGAAAAAAGAC  48 214
 CT43_CH2079 2091299 .. 2091318 + -10.8  -5.38047   AAACCTGTATTGAAG            CAGTTGCT CTCA AGCAACTG             TTTTTTATGTCCGTA 100 40
 CT43_CH2087 2099108 .. 2099145 +   -10  -3.12378   TAATTTAAATCTCTA   TAGTAGAAGGGGGAGG GACATG CCTTCCTTTTCTGCTA    TTACATAATATAATT  81 38
 CT43_CH2088 2099567 .. 2099598 + -16.2  -3.35283   TAACAAAATATAAAA      TAAAGCAGATTCTA AATA TAGAATCTGCTTTA       TTATGAAATACTTGT 100 69
 CT43_CH2090 2102642 .. 2102675 +  -8.3  -5.48825   AAGCATAATATAAAA     GTGCAGAAATCTT GAGTTAGA AAGAATTCTGCAC      TTTTTTTGCGTGATG 100 53
 CT43_CH2092 2104314 .. 2104346 + -11.6  -4.40132   GCAAAATGAAAATTA     TAAAAGCAGAACTCT CATA AG-GTTCTGCTTTTA      TTTGTTGTAATTAAT 100 130
 CT43_CH2096 NONE
 CT43_CH2097 NONE
 CT43_CH2098 NONE
 CT43_CH2099 2110607 .. 2110625 +  -8.9  -6.34616   GACTAATAAAAAAAA             CCTGCAT GAAAA ATGCAGG             TTTTTTTTATTTTCA 100 35
 CT43_CH2100 2110966 .. 2110998 + -11.6  -6.14618   AGTGTAATAAATTTT     GAAACCATACAT-GT TTGA ACTATGTATGGTTTC      TTTTTTTGTTTTGTA 100 34
        ssb2 NONE
 CT43_CH2102 2111671 .. 2111702 +  -6.6  -5.44198   GATAGAAAATAAAAA      AGGGGA-TCCTTTCT GAG AGTAAGGAATCCCCC      TTTTTATTGTTTCTT  93 107
 CT43_CH2104 NONE
 CT43_CH2105 NONE
 CT43_CH2106 2114591 .. 2114611 +    -9  -5.05113   AGAATTGCTAAAGAA            GGGGGAGA GTAAA TCTCCCTC            TTTTCTTTATATAGA  95 30
 CT43_CH2107 2115656 .. 2115678 + -12.1  -5.63645   TACCACGGGTTCAAA           CTCGTCTCT TTTTT AGAGACGAG           TTTTTTGTGTTTTAA 100 269
       argS1 2117409 .. 2117438 +  -2.2  -5.35815   AGATGTAGCATAAAA       GGTGTATGTATC ATTACA GATATGTATGCC        TTTTTATTTGGTATA  71 33
 CT43_CH2109 2118488 .. 2118499 +  -4.4  -3.05521   GATTGTCGTTTAATG                TCGA TAAG TCGA                 TATTCGACATATAAT  50 58
 CT43_CH2110 2123317 .. 2123341 + -15.8  -5.43487   GGTAACGCGGGTAAA          CCCGTCCCTA CTTCA TAGGGACGGG          TTTTTTGTGTGCTTT 100 347
        ileS 2126493 .. 2126517 + -15.9   -4.8048   TAATTAAAGAAAAAA          GGAAGTTGGAA TGA TTCCAACTTCC          TTTTTCGTATGGAGG 100 34
 CT43_CH2114 2130060 .. 2130080 + -12.6  -5.04222   GAATTAATATAAAAA            GTCGTGGC ATTAA GCCACGAC            TTTTTAATTTGCTTA 100 34
        murF 2132350 .. 2132373 + -13.2  -5.23765   TACCGCGGAAAAAAA          TCCGTCCCTA TTTA TAGGGGCGGA           TTTTTGTATTCTTTG 100 294
        aspC 2133769 .. 2133800 +   -14  -3.25204   CTTATACCATAATAT      TAAAACCCTTCTAT GAAT ATAGAAGGGTTTTG       TATATTTAAACATAA 100 29
 CT43_CH2118 NONE
 CT43_CH2119 NONE
 CT43_CH2120 NONE
 CT43_CH2121 2139957 .. 2139999 + -11.6   -3.5882   AAAAAATATAAAACT GGGGTAATTTGCAAAAAAAT ACT ATTTTTTTGTAAACTAACCC TTTAAAAATAGTGTG  93 30
 CT43_CH2122 2140359 .. 2140392 + -13.3  -3.58522   ATAGCAGAACAATTG     CAAAAGACCAGGAGC TATT GTTCCTGGTCTTTTC      TTTAAAAATCGTCAT 100 40
 CT43_CH2124 2146031 .. 2146063 + -21.5   -3.9392   AAATAAAGTAATAAA      GTTCGCCATCTTACC CTA GGTAAGGTGGCGAAC      TTATTTCAAATAAGG 100 35
 CT43_CH2125 NONE
 CT43_CH2126 NONE
 CT43_CH2127 2148684 .. 2148716 + -22.3  -2.90212   GGTGTTTGAGAATAC      GTACTCCATGATGGT TGT ACCATCATGGAGTAC      TATGTGCAATGATAG 100 355
 CT43_CH2128 2149565 .. 2149576 +    -3  -2.69545   TAGATGTGAAAGCAA                TTGA ACAA TCAA                 ATTATAGTATATACA  42 138
 CT43_CH2130 2151187 .. 2151197 +  -2.6  -3.57144   AGGGCGCTACACGCT                 TTAT TTT ATAA                 TTTAGCAGTACAGCA  48 10
 CT43_CH2131 NONE
 CT43_CH2132 NONE
 CT43_CH2133 2152879 .. 2152911 + -15.1  -2.89564   GCTGTTAGAAAGTAC      GTACTTCATGATGGT TGT ACCATTATGGAGTAC      TGTGTGCAATGAGAG 100 341
 CT43_CH2134 2154269 .. 2154320 + -15.5  -3.48276   AGGGTGGTACCGCGT TAAGTAAATGGCTTAGCGTCTCT TTAAAT AGAGATGCTAGGCCATTTTTTTA TTATATGGAAGAAGA 100 355
 CT43_CH2135 2155749 .. 2155763 +  -5.8  -2.75992   GTAATAGGGATTATT               TAACAT TAA ATGTTA               TAATATTCAGTAAAA  55 23
 CT43_CH2136 2156710 .. 2156736 +    -8  -4.31166   TTGAAATGAAGAAAA         GGGTGCTTCT ATAAATG AGGGGCACCC         TTTCTATATTTCTGG  83 32
 CT43_CH2139 NONE
 CT43_CH2140 2160683 .. 2160695 +  -3.5  -2.54574   TCATCAAATCGATAA                TTTAT ATC ATAAA                ATATTAATTAGGATA  44 60
 CT43_CH2141 2162037 .. 2162069 + -15.3   -4.0911   CCAAACTTAAAGTCT      TGTTTTATTATGTAT AAT ATACATAATAAAACA      TTGTTATTAGTTTTA 100 133
 CT43_CH2142 2162868 .. 2162881 +  -3.9  -3.53444   GAAAATATTTTATAA               TGTAA GTGG TTACA                TTTAAGGGGGAATGC  51 90
 CT43_CH2143 NONE
 CT43_CH2144 2163844 .. 2163867 +  -4.7  -5.93252   CATTTTCAAGAAAAA          GAATTTCTT TGTAAT GAGAAATTC           TTTTTTATTTTTGCC  93 60
 CT43_CH2145 NONE
 CT43_CH2146 2164729 .. 2164756 + -10.7  -3.81428   ATAGAAGTCAATAAA        GAAGGGATAGC CACTAA GCTATTCCTTC         TTTACGTTAATTGCT  89 63
 CT43_CH2149 NONE
 CT43_CH2150 2167982 .. 2167997 +  -6.1  -4.96762   TTTACCATTAAAAAA              GAGCC ATTGAC GGCTC               TTTTTCTAGTCTGTA  82 16
 CT43_CH2151 2168851 .. 2168871 +  -8.4  -5.98675   TGGTTGTCTTAAAAA            GAACAAGA GAAAA TCTTGTTC            TTTTTTATTTTTATA 100 29
 CT43_CH2152 2169745 .. 2169759 +  -2.8  -4.31433   AAATCGTAAGGACGT               TAGGTC CTA GACATA               TTTGTTATCAAGCTA  55 175
 CT43_CH2153 NONE
 CT43_CH2154 2170890 .. 2170920 + -13.4   -5.0538   ATTGATATGAAATAG       AAAAGGTAGGTGTG ATT CGCACCTACCTTTA       TTTTTTACCATCAAA 100 26
        thyA 2173565 .. 2173583 +  -3.2  -3.96624   TAATTGTAGAGGAGA             TGAAAAAA TGA TTGTTTCA             TTTATGGTCGCAATG  55 38
        dfrA 2174068 .. 2174093 + -11.3   -5.4659   AACAATAATAAAGAA         GATTGATGTGA GAAT TCGCATCAATC          TTTTTATTTATATTC 100 33
        pbpC 2176214 .. 2176242 + -15.5  -4.96848   TAATATGTAATAAAA        GGCTATCTCTATA ATT TATAGAGGTAGCC        TTTTTGTATGAGAAG 100 38
 CT43_CH2159 2177094 .. 2177116 + -10.7  -6.04419   TAGAATGCTTAAAAA           GTCCAAACA CTTGC TGTTTGGAC           TTTTTTTCTTCTTTT 100 43
 CT43_CH2160 2177914 .. 2177940 + -16.8  -5.58179   ATAAGTAATAAAAAA         GGTTTCAGCTTA TAG TAAGCTGAAACC         TTTTTTATTATGCTG 100 33
 CT43_CH2162 NONE
 CT43_CH2163 2179773 .. 2179792 +    -5  -5.85425   AAATGCAGTCGAAAA            GTGCCT CGTTATAA AGGCAC             TTTTTTATTTATTTG  90 12
 CT43_CH2164 2180379 .. 2180399 +  -8.3  -5.10154   ATGATATAGAGTAGA            GACAGGGTT AGG AGCTCTGTC            TTTTTCATTTTAGAT  91 37
 CT43_CH2165 2181370 .. 2181397 +  -6.5  -5.72616   CAGAGTAATAAAAAA        GCTACTTAGAAA ATATA TTTC-AAGTAGC        TTTTTTTATGTAAAT 100 33
 CT43_CH2167 2183596 .. 2183616 + -14.1  -5.86332   TTAGTGGATTAAAAA            TAAGGGTGC TAT GCACCCTTA            TTTTTTTTGCATTAG 100 29
       asnO3 2186218 .. 2186243 + -12.7  -5.53991   GTTTAATTAGAAAAA         CCTTAAGATCG CATA CGGTCTTAAGG          TTTTTTTCATAAATA 100 35
 CT43_CH2170 NONE
 CT43_CH2171 2187031 .. 2187046 +    -9  -6.28967   CAAGATGATAGAAAA              CGCCTT ACAT AAGGCG               TTTTTTTTATTTGTA 100 14
 CT43_CH2172 2188158 .. 2188191 + -18.5  -4.25283   ATAATGCAATATGGA     TGCGTATCTTTGTTA TGTA TAACAAAGATACGCA      TTTTAATAACAACAT 100 52
 CT43_CH2173 2189343 .. 2189367 + -10.9  -5.72622   AAATAAATGATAAAA          TACATCACTTT TAC GAAGTGATGTA          TTTTTTGTTTGTGAA 100 35
        dat1 2190350 .. 2190366 +  -4.3  -5.56568   ATCATGAAGAAAAAA              GCTGGTA TTC TTCCGGC              TTTTTTTCATGATAT  83 40
 CT43_CH2175 2191098 .. 2191118 +  -6.2  -5.61881   GTGCTACATAGAAAA            GACATTGG ACATA TCAATGTC            TTTTTATTTTTGAGC  93 42
 CT43_CH2176 2191845 .. 2191870 +  -4.8  -5.64421   TAATAAGAATAAAAA         GTACATTACT CAAAAA AGTAGTGTGC          TTTTTTATTTGGACT  85 38
 CT43_CH2177 2192961 .. 2192980 +  -8.6  -5.22039   AAGTGAAATGAAAAA            GAGGCCTT TAAA AAGGTCTC             TTTTTTGCGTTTAAA  95 30
 CT43_CH2179 2194645 .. 2194664 +  -2.8  -6.02919   ATTGATATAAAGAAA            GGGCTGAA GGGA TTCGGTTC             TTTTTTTATTTATAG  82 105
 CT43_CH2180 NONE
 CT43_CH2181 2196563 .. 2196573 +  -5.4  -5.38549   AAATTTATAGTAATC                 CCTA ATA TAGG                 TTTTTCTTCTTTCAA  84 90
 CT43_CH2182 2197521 .. 2197538 +  -5.5  -3.59262   GCGAATATAAAAAAA             GCTCTTC AAAT GAAGTGC              TTTCAGACTGTAGAC  59 31
 CT43_CH2183 2198577 .. 2198589 +  -4.9  -2.96598   AGTTTGTTACTTTAT                TTTCT TTT AGAAA                TGTATGACTTACTTA  51 62
 CT43_CH2184 2199935 .. 2199969 + -16.7  -4.80453   AGTTAGACAGCATAA     GAAGATGATCCCTGT ATTTA ATAGGGATCATCTTC     TTTATTTTCTACTAA 100 89
 CT43_CH2187 NONE
        dnaI 2203932 .. 2203976 +  -2.2  -4.15565   AAAATGGCCAAACTT CGGGTCTGATCCTAT-AATCA CTAA TGATTCAGGGGAGAAGACCTG TTTTAACATGGTAAC  54 93
      gntK_2 NONE
 CT43_CH2190 NONE
         gnd 2208524 .. 2208549 + -12.7  -5.42265   GGATGTTTTTGAAAA         GAAACTTGTGC ATAA GCGCAAGTTTC          TTTTTTATAGTTTAA 100 41
 CT43_CH2193 NONE
 CT43_CH2194 2211898 .. 2211921 +  -6.8  -5.73978   CGAAGTAATTGTGCG          AAACTCATAC GAAA GTATGAGTTC           TTTTTTGTTTATCAT 100 33
 CT43_CH2195 NONE
 CT43_CH2196 2213814 .. 2213857 +  -3.3  -3.07135   TTGAAAAAACACTTC TGC-CTCCCTTTCTTTTTCT ATATA ATAACAAGAAAGGGAGTGAA TACTTATTTATGAAC  46 37
 CT43_CH2197 2214424 .. 2214441 +    -7  -5.37593   ATTGTTCGACCGTTA             GAGCTC AAATGC GAGCTC              TTTTTTAATTTAAAA  93 25
       proV1 NONE
 CT43_CH2199 2217026 .. 2217047 +  -9.5  -5.64274   ATATGTTTGAAATGA           CCGTTCATT ACAA AATGAGCGG            TTTTTTTGTGCATAC 100 64
        arcD 2218632 .. 2218651 +  -4.3  -5.85425   ATAAAAATGTAAAAA            GTCCTTT TCATTT AAAGGGC             TTTTTTCTTTGTTTA  87 29
 CT43_CH2201 2218986 .. 2219004 +  -8.1  -5.73978   CGTTTTAATTTTGAA             CCTGGCG GATAA CGTCAGG             TTTTTTATTTCTAGT 100 45
 CT43_CH2202 NONE
 CT43_CH2203 2222736 .. 2222752 +  -5.2  -5.53288   GAGAAGTAAAAGAAA              TCCTTT TTCAT AAAGGA              TTTTTTTAGATTAAG  87 32
 CT43_CH2204 2223960 .. 2223994 +  -6.1  -3.71686   TAATTGATCAGCTAA    TTGTTCAAAATCAT-TC GAT GATATG-TTTTGAACAA    TTGTATTGACTTGAG  63 383
 CT43_CH2206 2225953 .. 2225970 +  -9.9  -5.42259   AAATTAGCTCGTAAA             CTCTGCT ATAT AGCAGAG              TTTTTTTGAGCATAA 100 27
 CT43_CH2207 2227539 .. 2227569 +  -8.4  -5.51165   ATTTGCGCTAAAAAA       CGAGTAGGGAAT GTTTACG ATTCCATACTCG       TTTTTTTACGCTTTT 100 56
 CT43_CH2209 2229375 .. 2229404 + -15.2  -4.62475   CATTTCAAAAATAAA       CAGTCTACACCA AATGAA TGGTGTAGACTG        TTTTAATTTGTAAGT 100 27
 CT43_CH2211 NONE
        atoD NONE
 CT43_CH2213 NONE
 CT43_CH2214 NONE
 CT43_CH2215 2236063 .. 2236082 +  -2.1  -4.07568   TAGGTGTGCCTAAAA            TTCGGCA TGTAAT TGCTGGA             TTTTCGGCAAGAGGG  52 151
       rocR2 2237476 .. 2237493 + -12.7  -5.14985   GCAAGTACGACAAAA             CCGCCGA ATAA TCGGCGG              TTTTTGTGTGTTTGC 100 15
        kamA NONE
 CT43_CH2218 2239388 .. 2239403 +  -6.1  -6.28401   TATTTCGACTTTTAA              CCAGC TTTTAT GCTGG               TTTTTTTCTTTTTTG 100 26
 CT43_CH2219 2239690 .. 2239733 + -16.4  -5.55769   AAAACTATTTGAAAA CATACAGAATACATTACTTT GTTT AAAGTGAAGTATTCTGTATG TTTTTTATTATGAAA 100 40
 CT43_CH2220 2240770 .. 2240780 +    -4  -2.65993   CCCCCTTTGAATAGC                 TTGT ACT ACAA                 TCGTATGCATCTCGT  46 209
 CT43_CH2222 2241082 .. 2241100 +  -8.1  -5.32699   GATGAATGAAAGTAA             CGACGGG CATAA CTCGTCG             TTTTTTACTCTTTAC 100 32
 CT43_CH2223 NONE
 CT43_CH2224 NONE
 CT43_CH2225 NONE
 CT43_CH2226 2243625 .. 2243646 +  -7.4  -5.28481   ACGTTCATAAAAAAA           GAACCTAT GTCATA ATAGGTTC            TTTTTTCATTGGCTC  91 11
 CT43_CH2230 2246900 .. 2246915 +  -2.6  -5.86976   TAAGAAGGAGTCAAA              GTAGTCT AGC AG-CTAC              TTTTTTATTTTGTCA  79 41
 CT43_CH2231 2247573 .. 2247594 +  -5.3  -3.57144   TCAAAATGTTCCTGC           TAATACTTT TGTG AAAGTGTTA            TTTCAAAATGAACAA  59 318
 CT43_CH2232 2248199 .. 2248210 +  -4.4  -5.92337   GAATACATAAAAAAT                CGTA TCAT TACG                 TTTTTTTTACTATAT  91 270
 CT43_CH2233 2249709 .. 2249733 +  -7.3  -5.24129   ATTAAACTGTAAAAA          GACATTTTC ATTAATA GAAAATGTC          TTTTTTATGCACCAA  91 36
 CT43_CH2234 2251226 .. 2251272 + -18.5  -3.57263   TGTTTTTGAGGTGTA TGTAAAGAGTCTTCTTACTAT ACATA ATAGTAAGAAGACTCTTTATG TTTAAAAATGGAAAT 100 56
        prsA 2252265 .. 2252301 + -19.8  -3.33708   TGATTGTAATCATAA    TTAGAAAAGGGAACTC ATATA GAGTTCCCTTTTCTAA    TTAGTGTGTGAGTTA 100 41
 CT43_CH2236 2252941 .. 2252977 + -15.5  -3.04203   GTTTCATAGAGTATG    TAAGAAAAGAGAGTGTT GTA AATGCTCTCTTTTCTTA    TGCTTTGTGAGTTCG 100 81
 CT43_CH2238 2254193 .. 2254228 +  -6.4  -4.17701   ATTATTGAAATAACG    TAAAAGAAGCTGAATAT TAA ATGA-CAGCTTCTTTTA    TTTCTGATTTATGAG  70 23
 CT43_CH2240 2255413 .. 2255429 +  -9.5  -5.76237   GATATATAGCAAAAA              GTAACCA TGA TGGTTAC              TTTTTTATTTATGTA 100 276
 CT43_CH2241 2256251 .. 2256281 + -17.2  -3.15758   CATGCCCAGCATGCA       TATAAAAAGCACCT TTA AGGTGCTTTTTATA       TTAGTAGCACATTAT 100 21
 CT43_CH2242 NONE
 CT43_CH2243 2257613 .. 2257627 +  -7.1  -5.53991   TGTTTTTAAAAGAAA               GGAGG ATTAA CCTCC               TTTTTTTAGTGGGTG 100 54
 CT43_CH2245 2260845 .. 2260897 + -11.8  -4.25104   TTTATAGAAAAGTTT TCAAAAGAGCACTTAAGATTTGTAG GAAT TTACA-ATCTTAAGTGCTTTTTTTA TTTTGCTACAGAAAA 100 47
 CT43_CH2246 NONE
 CT43_CH2247 2263265 .. 2263288 + -11.8  -6.02919   AATATCATATAGTAA          CGAGCTGTAT TTAT GTACAGCTCG           TTTTTTTATTTCTCA 100 101
        mmgD 2264739 .. 2264763 + -10.8  -2.52516   TAGCACCGCCCGCCA          GATGGGTGTT TGACC GACACCCATC          ATTAATAATAACGAA  82 59
        prpD NONE
        prpB 2267184 .. 2267197 +  -2.4  -3.54424   TAAAGCAGCGAAGGC               GATG AAAATA CATC                TTTGGCAAAATAAAA  46 42
 CT43_CH2251 NONE
 CT43_CH2252 NONE
       mmsA1 2271443 .. 2271499 + -15.6  -4.79949   AAACAGCCAAATCAG CTATTAA-ATGAAAACCACCACCACTA TTAA TAGTGGTGGTGGTTTTCATCTTGTTAA TTATTTTTTTCAAAA 100 49
 CT43_CH2256 2274022 .. 2274047 +  -3.4  -4.08394   GACTTTATACAAAAA         TAAAGATGTC ACAATA GGCATTTTTA          TTTTGGAGAAAATAT  56 23
 CT43_CH2257 NONE
 CT43_CH2258 NONE
 CT43_CH2259 2278765 .. 2278801 + -12.5   -4.4195   CATATATATGAATAA    TAAAACGTCGTCTCT TCATATT GGAGGCGACGTTTTA    TTTTATAAAATATCT 100 83
 CT43_CH2261 2279642 .. 2279681 + -19.6  -4.45187   AGTGAAATATTTTTA  TATAAAATAGCCCCTGCT GTTG AGCAGGGGCTATTTTGTG   TTGTTTTATGTATTT 100 39
 CT43_CH2263 NONE
 CT43_CH2264 2281468 .. 2281493 +  -6.2  -5.66684   TATGATTACGAAAAA         GCATCCTATT CTATTA ATTAGGATGC          TTTTTTTATGAGTTA  93 63
        bacA NONE
        bacC NONE
        bacE 2285719 .. 2285737 +  -7.5  -3.74077   CCGGAAGGAAGTGAT             TAGATGG CTATC CCATCTA             TTTCAGTATATAAAA  73 47
        bacB NONE
        bacF NONE
 CT43_CH2270 NONE
 CT43_CH2271 2295472 .. 2295483 +    -3  -2.64806   ACAATATACGTATGC                TTTC TTAT GAAA                 ATTGATATTCGTTGA  42 40
 CT43_CH2272 2296277 .. 2296290 +  -2.3  -3.13403   TAAAAAAATTATAGA               AGAGG TGTT CCTCA                TGTTAGTAGCGGAAA  42 38
 CT43_CH2273 2296835 .. 2296870 + -18.6   -3.9243   ATTGCTTAAATAAAA    CCAAGAAACCAGCCTAT AAA AT-GGCTGGTTTCTTGG    TTATTTAACAGCTTC 100 28
 CT43_CH2275 NONE
 CT43_CH2276 2298667 .. 2298701 +   -13  -3.93768   TAATATAGTTTGTAA     GAAGGAGAGGCTTTAA TTA TAGAAGTCTCTCCTTC     TATTTTATTCCGCAT 100 38
 CT43_CH2280 2303042 .. 2303083 +  -2.5   -5.2696   ATTGATGATAAAAGG GATAGGGAGTAGATGAT AATGTAAG ATTGTTTACTTTCTATC  TTTTTTGGATTTTAA  69 40
 CT43_CH2281 NONE
 CT43_CH2282 2304934 .. 2304959 + -13.5  -5.28481   TGGTAAAATTGTGAA         GTGAAACCAAA AAAA TTTGGTTTCAC          TTTTTTAATTAAATA 100 35
       thrS1 2307502 .. 2307533 + -11.8  -5.47159   AATATTGATTGTAAA      GAAAACACACTATT AGAA ATTAGTGTGTTTTC       TTTTTTATCTTACAA 100 33
 CT43_CH2284 NONE
 CT43_CH2285 2310414 .. 2310440 +  -5.2   -5.9667   AATAGTTTATGAAAA         GAGTCCTTGT GTTGAGA ATAAGGGCTC         TTTTTTTATGTTTTT  95 36
 CT43_CH2286 NONE
 CT43_CH2287 NONE
 CT43_CH2288 2313753 .. 2313783 + -13.5  -5.15969   ACAAAAGTAAAGAAA       GATAGCTGAAGAC AAATC GTTTTCAGCTATC       TTTTTTCGCTTAAAG 100 31
 CT43_CH2291 2317429 .. 2317454 +  -9.2  -4.23892   TAAATTGCACAAAAA         GAGTATTGAA ATTTAA TTCAATACTC          TTTTCAATAGTTAAA  88 65
 CT43_CH2294 2319942 .. 2319958 +  -5.9  -4.88407   ACATTTGTCCTTTTG              CCATTAT AGG ATGATGG              TTTTTAATTAAGTCA  78 138
 CT43_CH2295 NONE
 CT43_CH2296 NONE
 CT43_CH2297 NONE
 CT43_CH2298 2321905 .. 2321947 +  -8.6  -3.75897   CTCGATTGGTGAGGG CTAATAATCAGTGGGGGAT GAGCAA AGCCCCCACTGATTAA-AG TTTCACTTCACAATT  77 105
 CT43_CH2301 2324335 .. 2324349 +  -5.8  -3.78629   AAAACCCCCACTGAT               TAAAGT TTC ACTTTA               TATTTTCAGTTTACT  64 72
 CT43_CH2302 2325134 .. 2325163 + -16.7  -4.63218   AAATAAATTATAAAA       GAGCATGTTTGAA AAAA TTCAAACATGCTC        TTTTATTAAAGCAAA 100 100
 CT43_CH2304 2328160 .. 2328198 + -13.4  -2.98014   AAAGGTGGATGCATA   GTGAAAAAAGCCAAGG ATATTTC CCTTGGCTTTTTTCAA   TGTAGTTAATTAATT 100 25
 CT43_CH2306 2329391 .. 2329442 +   -15  -3.22476   GGATAAAATTGAAAA TGAATAA-AAGAAGAGACCATGT TTATATT ACATGGTCTCTTTTTATTATTCA TTAATACTAAGTAAT 100 179
 CT43_CH2307 2330102 .. 2330117 +  -3.3   -3.6363   GAATTGATAATTATG              CCATT CACAAA AATGG               TTGGTTTGTAATAAT  52 34
 CT43_CH2308 NONE
 CT43_CH2309 2331749 .. 2331770 + -13.1  -5.45652   AATGAATAGTTAAAA           GCATGACAG TATA CTGTCATGC            TTTTTTATTAGAACT 100 32
 CT43_CH2311 NONE
 CT43_CH2312 NONE
 CT43_CH2313 2334736 .. 2334765 +  -2.3  -4.16016   TTTTTTATTAGGTAA       TTTGAAAATATAT TAAA ATATATTGTCTAA        TTTCTTACAGAATGC  54 77
       hemY2 2336259 .. 2336316 + -24.2  -3.66095   AAATAAATAATACTG TAGAATAAATAAAAACTGTTCCTTCA GCAAAA TGAAGGAACAGTTTTTATTTATTTTA TTTGAATGGAAATTT 100 31
 CT43_CH2316 2337731 .. 2337748 +  -5.6  -6.41881   TATAATAAAAAAAAA             CCTCTT AATTAA AAGAGG              TTTTTTTTTATTATA  95 36
 CT43_CH2319 NONE
 CT43_CH2320 2340197 .. 2340224 +  -7.8  -6.00814   TGCATAAAGTAAAAA        CAACGAGTGTTGT AGA ACG-CGCTCGTTG        TTTTTTTTGCTTCTT 100 34
 CT43_CH2321 2341072 .. 2341098 + -13.2  -5.06505   CTAATTAATGTAAGA         GAGTAATTGCTT ATT AGGCAATTACTC         TTTTTATATGTACTT 100 45
         asd 2343177 .. 2343202 +  -9.7  -5.34309   ATATAGTTTAAAAAA         CTGGGGAATCG TTAA TGACTCCCCAG          TTTTTATTTCATAAT 100 40
 CT43_CH2325 NONE
 CT43_CH2326 2345585 .. 2345609 + -10.1  -4.91977   TTTTCTATAAATTAG          CCCTATTTCAA TTA TTGGAGTAGGG          TTTTCTATTTTAATA 100 212
 CT43_CH2328 2347244 .. 2347256 +  -3.5  -3.39036   GAAGGGATAAAAGAA                TAAAA AAA TTTTA                TTATAAATAGTGTAT  50 23
 CT43_CH2329 2348402 .. 2348412 +  -2.6  -3.29263   TTTTAAATGTCTATA                 TAAA TGC TTTA                 TTATGGAGGAGCTAT  44 35
 CT43_CH2330 2349031 .. 2349056 +  -8.4  -5.20783   AATATAGATTAAAAA         CCGTATTCTT TTCATT AAGAATGCGG          TTTTTGTATTTACAT  93 34
 CT43_CH2331 NONE
 CT43_CH2332 2352797 .. 2352825 + -12.6  -6.02919   ATTTAATAAAAAAAA        TGAGGTTTCTCT AGAAA AGAGAAGCCTCA        TTTTTTTATTTGTAA 100 35
 CT43_CH2334 NONE
 CT43_CH2335 NONE
 CT43_CH2336 2354799 .. 2354832 + -10.5  -3.62224   CTTTTTACATAACAA     TTTAATCCTTTGTAG AAAA CTACGAGGGGTTAAA      TTGTTCAAAGAGTAT  87 236
 CT43_CH2339 2357291 .. 2357342 +   -14  -5.45802   GGCTAGAAAACTAGA GGACACCAATTCATTAAGGCAGC CATTAAA GCTGCTTTAG-GAATAGGTGTCC TTTTTATTTTGAAAA 100 253
 CT43_CH2340 NONE
 CT43_CH2341 NONE
 CT43_CH2342 2358940 .. 2358956 +  -9.5  -3.49077   ATGTTATTATCAAAA              TAAGGGT TTT ACCCTTA              TTCCCTTTTTATAGG  80 372
 CT43_CH2343 2360015 .. 2360038 +  -7.6  -5.80817   AAAGATTTGGAAAAA          GGGTTACA-AT CGA ATCTGTAACCC          TTTTTTTCTATTAAA 100 66
 CT43_CH2345 2361907 .. 2361922 +  -6.8  -5.49568   ATAACCAATTTCAAA              GCATCC ATAC GGGTGC               TTTTTATTTTGGATT  93 354
 CT43_CH2346 2362462 .. 2362476 +  -2.8  -2.95091   GTGTGGACAGCCTAA               TGATAC AAG GTAACA               TATATGACTTGCAAT  42 372
 CT43_CH2347 2363037 .. 2363055 +    -6  -4.00868   ATATGTATTTGTAAT             CAGTGG ACCGTCG CCACTG             TTTCCTTCTAAGTAA  67 311
 CT43_CH2348 NONE
 CT43_CH2349 2364361 .. 2364377 +  -2.3  -2.86343   TGTCCGAGGTGGTAT              GTAATGT TTG AAATTAC              TGTAATGATTGGAAT  41 22
 CT43_CH2350 NONE
 CT43_CH2351 2365655 .. 2365689 + -14.4  -2.72977   TGTGCGTTAATTTAA     CGAAAAGGGCCCCTTA TTA TAGGCGGCCTTTTTCG     TGCTGTATGTAACAT 100 31
 CT43_CH2356 2370665 .. 2370681 +  -6.6   -5.8096   TAACAAAAGATAAAA              CCATCT ATAAG AGATGG              TTTTTATTTTTTATC 100 55
 CT43_CH2357 2372714 .. 2372743 +  -7.3  -5.56673   TTATTAATTAAAAAA       GACAGATTCTT AATGAAAA AGGAATCTGTC        TTTTTTGTTCTGAAT 100 30
 CT43_CH2359 2374912 .. 2374946 + -17.5   -5.0133   AAACAGGGGTTTGTA     TATAGTCCTTCCTAA TAAAT TTAGGAAGGACTATA     TTTTTTGAGGAAATA 100 67
 CT43_CH2361 2376645 .. 2376689 + -10.9  -4.79352   TATTTTCATGTCACA TCCCTCCTTAATCGTTCGTC TTGTAT GTAGAACGAT-AAGGAGGGA TTTTATTATGAATAC 100 67
 CT43_CH2362 NONE
 CT43_CH2363 2378850 .. 2378890 + -11.6  -4.89393   ATTTAAATGTAAAAA T-ATAAAAAAGCGCATTTC TTTA GAAATGCGTTTTTTTATTA  TTTTTCTAACATTTC 100 21
 CT43_CH2365 2380136 .. 2380147 +  -5.8  -2.80512   AGAAACAGGGAATGA                CTGC ATAA GCAG                 GTATTTCTTGAAAAT  56 218
 CT43_CH2366 NONE
 CT43_CH2367 2382234 .. 2382269 +  -9.8  -5.63504   AATAAATAACAAAAA    GCGCCTTAAAAGCTAAG TAT CACAGCTT-TAAGGCGC    TTTTTTTATGAGGTT 100 32
 CT43_CH2369 2384382 .. 2384411 +  -5.1  -3.15758   TTAATAAGTTAGGGG       GAAACGTTATGAA TAAG TTTGTCACGTTTC        TTGATAAAAACTTAT  52 29
 CT43_CH2370 2385694 .. 2385716 + -10.7  -3.96618   ACGCTGTTATTTTGA           GTGATAGAC TTTTT GTCTATCAC           TTCTTTCACATTAAA  91 46
 CT43_CH2371 NONE
        anmK NONE
 CT43_CH2373 NONE
 CT43_CH2374 2388802 .. 2388830 +  -9.7   -5.4833   AATAAAATAAATGTT        TAATAAGTGGGGA TAA TCTCCACTTATCA        TTTTTTATTAAATAG 100 36
 CT43_CH2375 2390607 .. 2390621 +  -5.8  -3.09516   CGTAAAACGCCATTA               GTAAAA TCT TTTTAC               TTGACTAGTAAAACG  57 187
        tdcB 2391532 .. 2391563 +  -6.8  -4.98522   AATAGTTTTATAAAA      G-AAGAGCTAAGA GAAATGA TCTTAGCTCTTAC      TTTTTGTCTACCGTT  85 36
 CT43_CH2377 2392314 .. 2392342 +  -8.2  -5.36965   ATCGGGCTTTTACGG       GCAGCCT-TACTC TAAT GAGAATAGGCTGC        TTTTTTATCATGTTA 100 115
 CT43_CH2378 2393694 .. 2393731 + -14.3   -4.4784   TATAAGAACAAATAA   TAGGGTGACAGAACTTA GGAA TAAGTGCTGACACCCTA    TTTGTTTACAGTTTG 100 49
 CT43_CH2380 2395098 .. 2395125 +  -6.3  -5.31059   ATAAACTAATGAAAA        CCGGTCTTTCC TAAATC GAAAAGATCGG         TTTTTTAGTTCATAT  84 37
 CT43_CH2381 NONE
 CT43_CH2382 2396982 .. 2397003 +  -7.3  -6.04953   GTTATAATTGTAAAA           GAGTCGCAA AATA TTGTGGCTC            TTTTTTTGTTTGTAT 100 44
 CT43_CH2384 2399126 .. 2399140 +   -10  -3.01712   CATATAATTTTAATA               GACCGA CAG TCGGTC               TATTAGGAAGGAGAA  81 99
 CT43_CH2385 2399788 .. 2399806 +  -3.2  -3.79071   GAAGTTTTAATTAAA             CAGAAA TAGTGAT TTTCTG             TTTGAGTATTATCGA  52 17
 CT43_CH2386 2401171 .. 2401182 +    -3  -4.08706   ATTTATTTCAATTAC                GAAT CTAT ATTC                 TTTGTCTAATAGCCA  55 92
 CT43_CH2387 2402226 .. 2402244 +  -5.3  -5.85425   TTTAAAGGGAAAAAA             CTCCTAT TGAAT GTAGGAG             TTTTTTCTTTGTTTG  91 191
 CT43_CH2388 2403068 .. 2403081 +  -3.9  -2.61341   TTTTTATAGACAATA               TATTC ATAG GAATA                TACGTTCGGTTTTTG  46 68
 CT43_CH2389 2403622 .. 2403651 +  -4.3  -5.61596   AAATAACATAAAAAA       GCGTTCCAACTGT CAAC AGATTTGGAATGC        TTTTTTTGTGGAAAT  83 97
 CT43_CH2390 2404725 .. 2404752 + -12.9  -2.89304   AATGCTCTTAAAATA        GAAAAGGATGG TGCTTT CCATCCTTTTC         CTTATGTATTTTGAG 100 76
 CT43_CH2392 2407255 .. 2407268 +  -2.4  -3.44051   CAATAAAATTCACAT               TTCC GAAAGG GGAA                TTATAATGATAAAAC  46 173
         gpm 2407993 .. 2408004 +    -3  -4.72272   TGAAGGGGAAATTCC                GAAA CATA TTTC                 TTTTTAATACGAAAA  62 7
 CT43_CH2394 2408988 .. 2409008 +  -9.8  -4.84914   TATTTTAGTAAATAA            GGACAGAA TCTTT TTCTGTCC            TTTTCTTCTATACAT 100 26
 CT43_CH2395 NONE
 CT43_CH2396 2409455 .. 2409498 + -20.1  -4.19414   AGTATATAAAAGAGG GTAATTTAAAAGAGAATGC GTAAAA GCATTCTCTTTTAAATTAC TTCTTTATGATTTGT 100 3
 CT43_CH2398 2410465 .. 2410497 + -19.5  -4.98522   ATGAGAGCAAAAAAA      GAGAAAGAAAATGCA TAG TGCATTTTCTTTCTC      TTTTTATATGCAATT 100 8
        pepD 2412113 .. 2412138 + -14.9  -5.47159   ACGACGAAATAAAAA         GGAGCCTATAA AAAT TTATAGGCTCC          TTTTTTGTATTGGAA 100 43
 CT43_CH2400 NONE
 CT43_CH2401 2413842 .. 2413875 + -15.7  -2.62263   TAATATGAAATTTCA     TGTACTGTATTATTT TCGA AAATAATACAGTACA      TAGTATAAAAAGGAT 100 89
 CT43_CH2402 2415320 .. 2415359 + -13.2  -4.23386   GAACCTGTTTATCCA  TAGGATAGGTAAAGATGC GATG GCATTTTTACCTATTTTA   TTATATTTTTTATCC 100 81
 CT43_CH2404 2417301 .. 2417312 +    -3  -3.30212   AACAAGAAATAATTC                TAAC ATAA GTTA                 TTCCTAATTGGTATT  46 40
 CT43_CH2405 2417747 .. 2417772 +  -6.9  -5.34365   ATATACTTGGAAAAA         GGTCCTCTA TCACCATT TAGGGGACC          TTTTTATTGTTATCA  93 67
 CT43_CH2406 2419502 .. 2419537 +   -12  -3.66742   GAGAGGAGGGGCGAT    GGGG-AGGTTTGGGTTA TAA TAGCTCAAGCCTGCCCC    TATTCTTTGTATGGA  95 47
 CT43_CH2407 2420324 .. 2420334 +    -4  -2.90387   GTAATCAATATATTA                 TTTG GAT CAAA                 GTTTGAGTGTTTTCA  47 43
 CT43_CH2408 2421233 .. 2421254 +  -6.6   -5.7946   AATCAGTTAGAAAAA           CTACATCC AGTATA GGGTGTAG            TTTTTTTATTACAAA 100 40
 CT43_CH2409 NONE
 CT43_CH2410 2424381 .. 2424416 + -14.2  -4.32482   AGTAAATATATGAAT    ATGACCGATTCTTAAG TATA CTTAGGAATCGGTCAA     TTTTGGATTCTAAAT 100 65
 CT43_CH2411 2425275 .. 2425298 +  -6.8  -3.69455   AGAATCACAAAGAAA          GATCACTTAT GGAA ATAGGTGGTC           TTTAAACATTTTTAT  67 166
 CT43_CH2412 NONE
 CT43_CH2413 NONE
 CT43_CH2414 NONE
 CT43_CH2415 2453589 .. 2453636 + -15.2   -3.5947   CTTGATGATATAACT GAGGAAAGGTGTATATTTTCAT TGAT ATGTAAATATGCACCTTTCCTA TTGTATATGAAAGTT 100 241
 CT43_CH2416 NONE
 CT43_CH2417 2455251 .. 2455299 + -17.2  -3.85864   TAAGTATTATGTACT TTAAAACCAAAACTTTCTCAAT TTAAT GTTGAGAAAGTTTTGGTTTTTA TTATTCTAGTAGTAA 100 126
 CT43_CH2420 2459029 .. 2459054 +  -6.3   -5.2204   GTGTAATAAGAAGGA         TATTCAGAC TGCAATAT GTCTGAATA          TTTTTCTTGGTTCTA  84 35
       glsA2 2460166 .. 2460193 +  -5.7  -4.78149   GAGCGAGTCCAAAAG        TGTTCAGAC CTTATATTGT GTCTGAACA         TTTTTGAGTTATAAA  78 67
 CT43_CH2422 NONE
 CT43_CH2423 2462858 .. 2462876 +  -7.5  -5.95539   TTGAATTTAAAAAAA             GATGCTA TCTTC TAGCATC             TTTTTTTCTTTAAGA 100 260
 CT43_CH2424 NONE
       gerAA 2464908 .. 2464931 +  -6.8  -3.84808   AACCTAAAGACCGAA          TAACAACTTC GCAA GCAGTTGTTA           TTATTGTAAATTACA  69 77
 CT43_CH2426 NONE
       gerAC 2467204 .. 2467237 + -11.4  -5.89659   GCATCAAAACAAAAA     GTTACAAAAATTTT AATTTA AAAATTTTTGTAAC      TTTTTGTTTTTTTAT 100 65
       proC1 NONE
 CT43_CH2429 NONE
 CT43_CH2430 2471018 .. 2471039 + -10.3  -5.05577   ACTACACTAAGAAAA           TAATCCGTA TATA TACGGATTA            TTTTTCCTTTAATTT 100 380
 CT43_CH2432 2473621 .. 2473651 +  -6.2  -5.42265   ACAAAAAGACAGAAG       GCTGCAAAGTGT TTCAAGT AAGCTTTGCAGC       TTTTTTGTAATTTAA  88 135
 CT43_CH2433 NONE
 CT43_CH2434 NONE
 CT43_CH2435 2478552 .. 2478587 + -12.7  -2.76261   AAATCCTTATATAAC    AGAAAGGCGGAGTCT CATTAA AGACTTCGCCTTTCA     ATTATATATAAGTAT  95 122
 CT43_CH2436 2480477 .. 2480499 +  -7.8  -3.22678   TCGACCTTGAAGAAC           TACTTCGCTT CCT AAGTGGAGTA           ATTTTATGCAAAATT  69 272
 CT43_CH2437 2483449 .. 2483479 + -14.2  -4.90906   AGCCTGTTATAAAAA       CATCCTTTCTTTAG AAC CAAAAGAAAGGATG       TTTTTAATATTGTAA 100 160
 CT43_CH2438 NONE
 CT43_CH2439 2485543 .. 2485569 +    -6  -5.47218   GAACAGTATAGATTA        CAAAA-CCCCT GTATTA AGGGGATTTTG         TTTTTTTACATGACG  86 436
       sasP1 2486629 .. 2486647 +  -8.9   -5.8901   TATAAAGTAGAAAAA             GGAGAGA TTATT TCTCTCC             TTTTTTGTTTTGTAT 100 48
 CT43_CH2443 NONE
 CT43_CH2444 2488216 .. 2488232 +  -6.6  -5.86976   AACATTAAGAGCAAA              GCATCT AGTTC AGATGC              TTTTTTATTTTGTAG 100 70
 CT43_CH2447 NONE
 CT43_CH2448 2491873 .. 2491897 +  -7.8   -4.9218   TAATTAGTAGAAAAA          GGAAGGGACC TATTT GGCTCCTTCC          TTTTTCTCATACATA  87 271
 CT43_CH2449 2493576 .. 2493596 + -13.3  -5.88471   TTAATCGACCATAAA            GCCGAGTGC AAT GCACTTGGC            TTTTTTTTAATCGTC 100 27
 CT43_CH2450 2494298 .. 2494334 +  -9.1  -4.56597   AATGTGAATGTATTT    ATAATTATAGTTAGTTA AGC TAACTAATTATAATTAG    TTTTTCAACACAGGA  90 423
 CT43_CH2452 2497499 .. 2497536 +  -9.3  -5.77988   GATAAAATAAGAAAA   CGCTATTCTTTTTGTAG AAAT TTACAGAAAGTATGGCG    TTTTTTTGTATCTAT 100 36
 CT43_CH2453 2499766 .. 2499788 +  -4.2  -5.14965   TTAAATTTCAAAAAA           GCATTCTT TCTAATC GAGAATGC           TTTTTTGCTGCGACT  74 127
 CT43_CH2454 NONE
 CT43_CH2455 2501452 .. 2501489 + -14.4  -5.35365   TAGATTCTATTTGGT   AAAAGAGGAAGGTTCA CTTTAA TGAACCTTCCTCTTTG    TTTTTATTCTCTTTT 100 24
 CT43_CH2457 2505810 .. 2505843 +  -6.8  -4.72497   AAATGAAATATGAAA     TAGGAGATAGAGGC GTCGTA GCTACTATCTCTTA      TTTTGTTAATAACTC  79 94
        bla1 2506935 .. 2506963 + -10.5    -5.252   ATAAGAACTTGGAAA        GTGATTCTTTTTA ATG TGAAAAGAATCGC        TTTTTTATAAGCATG 100 75
 CT43_CH2460 2508834 .. 2508859 +  -6.2  -5.26316   GGCCAGAGATTGTAG         TCGTGCAGCT AAATTA AGTTGTACGA          TTTTTTATACAATAA  84 9
 CT43_CH2461 2509336 .. 2509386 + -17.2   -4.0648   AATTTATAGTTTAAA TGAAACAGAGTCGACTTTAGGA AATGAAA TGCTAATGTCGACTCTGTTTCA TTGTTTCATATCGTT 100 46
 CT43_CH2462 NONE
 CT43_CH2463 NONE
 CT43_CH2464 2511958 .. 2511995 + -14.5  -3.90352   TACATTACTTTTAAG   TAAAAATAAATCGCCTT TAAA AAGGCGATTTATTTTCA    TTATATATTTTTGAT 100 61
 CT43_CH2466 2513575 .. 2513604 +  -5.1  -5.66684   AATTCGACACAAAAC       CTCCTATGTTGTT GTAG AACAATGTAGGAA        TTTTTTTGTGCATTA  85 55
 CT43_CH2467 NONE
 CT43_CH2468 NONE
 CT43_CH2469 NONE
        mvaB NONE
 CT43_CH2471 NONE
 CT43_CH2472 2519775 .. 2519788 +  -8.1  -4.24342   ATATCCAGTTTAAAA               GCCCT ATTT AGGGC                TTTCTTGCTCAAAAA  83 28
 CT43_CH2473 2521772 .. 2521795 +  -9.6  -5.59879   TTATAAAATTAGAAA          GGAGCTCTAT ATAA ACAGAGCTCC           TTTTTTATGTTTATA 100 35
 CT43_CH2475 NONE
 CT43_CH2476 2524262 .. 2524276 +  -3.6  -3.84585   AACCTACTATTTTAT               CTTTAT ATG ATAGAG               TGTTTTCTACTCGAT  54 292
 CT43_CH2477 2525134 .. 2525159 + -13.5   -4.6038   TATGCTGCTTTTTTG         TAAAGCCATTC ACAT GAATGGCTTTA          TTTTAATTTCATATA 100 42
 CT43_CH2478 2526230 .. 2526251 +  -4.5  -3.75665   ACTTATCAATTCGCT           CTTTTTTTC CTTT GAAAAACAG            TTTGATAAGATGTGG  57 499
 CT43_CH2481 2529505 .. 2529529 +  -7.2  -3.38183   GATAGAATTAAAAAC          CGACTTGC ATCTTAAGC GCAAGTCG          ATTTTATATATATAA  68 449
 CT43_CH2485 NONE
 CT43_CH2486 NONE
 CT43_CH2487 2534812 .. 2534827 +  -4.8  -3.23538   GTAAATAATAGATAG              TTTGTT ATAA AACAAA               TTAATAGTGGGTTAT  54 26
 CT43_CH2488 2535806 .. 2535828 +  -4.9  -5.52079   TTTATTACTCTAAGA           GCGGAAAGA TTTAT TCTTTTTGC           TTTTTATTTTGCTGT  85 28
 CT43_CH2489 2536433 .. 2536473 + -12.9   -3.0464   AGGGATATTACATAT  TGAAGAGGTGGCTTTTGTA GAT TACAAAAGTCATCTTTTTA  TGTTAGGAATAGATT 100 89
 CT43_CH2490 2539409 .. 2539448 +   -14  -5.37593   ATATTACATATAAAA  CACGTTACTATTCTT-TTA TTT TAATGAGAATAGTAACGTG  TTTTTTGATTTGAAA 100 209
 CT43_CH2492 2543069 .. 2543091 +  -8.4    -4.323   TAACTATGGGAAAAG           GGGAGAAGCA AAA TGCTTCCCTC           TTTTCGATATTTAAG  83 56
 CT43_CH2493 NONE
 CT43_CH2494 2546081 .. 2546124 +  -8.4  -4.07568   TTGCGTTAGAGAGTT TTTAG-GACATGAGTTCGGTA TTG TACTGGACGCATGTTACTAAA TTTTGAAGGAGGAAG  79 68
 CT43_CH2495 2546804 .. 2546817 +  -5.9  -6.02919   CCTATGATTTCATAA               GTCGC AAAT GCGGC                TTTTTTTATTTGTAC 100 73
 CT43_CH2496 NONE
 CT43_CH2497 NONE
 CT43_CH2498 2551723 .. 2551753 + -11.4   -3.9398   GTTAATGATGATAAA       GAAAAAAGGCAT TAATTAT ATGCCTTTTTTC       TTTATAAACTTATCC  95 11
 CT43_CH2500 2553234 .. 2553260 +  -3.8  -3.08992   TTCAATTGGATTCTC         CATACTGACT CTGAGGT GGTTAGTATG         TATATTAAGCTAGAT  48 88
 CT43_CH2501 NONE
        dnaI 2555271 .. 2555291 +  -2.7  -3.76186   CTATCGAATTAAAGA            TCATTTT AGCAAAG AAAATGA            TTGATTTTGTACATG  48 1
 CT43_CH2503 NONE
 CT43_CH2504 2556478 .. 2556504 +  -6.6  -5.36441   TATTTTATCGTAAAA         GTTGCTTTTCAT TTA AGGAAAGGCAGC         TTTTTTATATGGAAA  93 43
 CT43_CH2506 2558436 .. 2558478 +  -9.5  -3.73872   CAGCTAATTAATAAA TGCTGTTGTTTAAC--CAAAG TTT CCTTGCAGTTAAACAACAGCA TTCTTAAATATTGAT  82 58
 CT43_CH2508 2560831 .. 2560869 + -13.3  -3.54029   GATTAATAAAATAAA   GAAGAAAGCTACACCCA AAATA TAGGTGCAGCTTTCTTC   TTATAATTGCTCAAG 100 1
 CT43_CH2510 NONE
 CT43_CH2511 NONE
 CT43_CH2512 2565224 .. 2565247 +   -14  -4.76041   TATATATTTTTTTAA          GAGCACTCTT AGCA AAGAGTGCTC           TTTTTCATCAATGTA 100 106
 CT43_CH2515 2567617 .. 2567627 +  -2.6  -3.22653   TTGGGCGGCAACAAC                 TTTT CTT AAAA                 TGTTATCAGAATAGT  44 1
 CT43_CH2516 2568761 .. 2568786 +  -3.4  -3.18264   TATTTGTCACATACC         TCACAAATGT TTCGTC ACATTTATGA          TTACTAAATGAGGAG  48 58
 CT43_CH2517 NONE
 CT43_CH2518 2570237 .. 2570262 +  -7.7  -5.98675   TTCTCGTGAGAAAAA         GCCAATACT ATAACGGA AGTATTGGC          TTTTTTATTTTTCTA 100 42
 CT43_CH2519 2571246 .. 2571269 + -11.1  -4.91429   CAAAATCCCCAAAAA          GAGCACTTG CGGAAA CAAGTGCTC           TTTTATTTGGGATTT 100 165
 CT43_CH2520 2572072 .. 2572123 +  -8.5  -2.92496   ATAATTTTATGAAAA TAAAAGGTAAGGGTG-TTCCT-ATG AATA TATGAGGAAATATCCTTACCTTTTA TAGTGTTATTTCTGA  71 94
 CT43_CH2523 2574354 .. 2574390 + -12.4   -5.8187   CCGCGAAGCTAACAA    CTCTCGTCCTCAAGAT GAATA ATCTTGGGGGTGGGAG    TTTTTTTGTTGCATA 100 338
      lysS_1 2576045 .. 2576055 +  -5.4  -3.21778   AAAATTTCTAAGTAC                 TTGC GTT GCAA                 ATTTTACTATCGTGA  56 68
 CT43_CH2526 2577571 .. 2577594 +  -6.8  -5.37593   ATAAGGGACGAAAAA          GGATACTTTT GTAT AAAAGCATCC           TTTTTTAATTTACGG  93 41
 CT43_CH2527 NONE
 CT43_CH2528 2579382 .. 2579414 + -10.1  -4.31397   TAGATAATTGATCTA      GGCTAAAGAACTT TGGAGAT AAGTTTTTTAGCC      TTATTTTATAGCAAT  93 38
 CT43_CH2530 NONE
 CT43_CH2531 2583287 .. 2583308 +  -8.8  -5.50925   ACGAGATCATTAAAA           GCTTAGAG CTAAAA CTCTAAGC            TTTTTTATATTCATT 100 52
 CT43_CH2532 2584374 .. 2584404 + -14.3  -3.14602   TATAATATTTGAAAG       TAAAAAGACCGAT AAAAA ATCGGTCTTTTTA       TATTAATAAAATAAA 100 90
 CT43_CH2533 NONE
 CT43_CH2534 NONE
 CT43_CH2535 2588042 .. 2588080 +   -17  -5.04601   AAAAATCTTAAAAAA   GAGTTCGAGGTTGATAGA AAG TTTATCAGCTTCGAACTC   TTTTTAGTTTATAGA 100 30
 CT43_CH2537 2589982 .. 2590019 + -15.8  -3.65812   ACCGAAATAGGTAAT   AATAAAGCGCTCTCGA TGGAAT TCGAGAGCGCTTTATA    TTATATTGAAAGAGG 100 31
 CT43_CH2538 NONE
 CT43_CH2539 NONE
         ddl 2593759 .. 2593782 + -11.2  -6.09196   ATACTGTCAATTTCA          CTTTCTTTAC GCCT GTAAAGAAAG           TTTTTTTATTTTACA 100 238
        tenA 2594890 .. 2594915 + -13.5  -5.57054   ATGAAGTGCTGTTAA         CACAATATGCA TATT TGCATATTGTG          TTTTTTTGAGTTCTT 100 373
 CT43_CH2543 2595315 .. 2595328 +  -8.1  -5.72622   GAAATAGAATGAAAA               GCCCT AATA AGGGC                TTTTTTCTTTGTAGG 100 85
 CT43_CH2544 2596382 .. 2596416 + -10.2  -4.88258   AAGAGGTGATGGATA     AAGCAATGACTAGATT TAA AATCTAATCATTGCTC     TTTTCTTATGGTTTT 100 274
 CT43_CH2545 2597122 .. 2597142 +  -2.5  -5.62552   TGATATTTGTAAAAA            GGGCACC GAATTAA GGTGTTC            TTTTTTGGTTTTTTT  75 45
 CT43_CH2546 2598360 .. 2598377 +  -2.7   -4.8667   TTATACCTACTTTGT             GTGTCAT CCTA ATGAAAC              TTTTTCTGAAATGTG  65 270
 CT43_CH2548 2599972 .. 2599988 +  -8.7  -5.76237   TATAACATGTAAAAG              GCGCTCA TTA TGAGTGC              TTTTTTATTTGTATA 100 29
 CT43_CH2549 2600668 .. 2600684 +  -8.7   -5.4492   ATAATTTGTAAAAAA              GCGCTCA TTA TGAGTGC              TTTTTTGTATATATA 100 30
 CT43_CH2550 2602557 .. 2602571 +  -2.1  -4.13304   AAAGGGTGGTGAAAC               GCTTG AAAAA TAAGC               TTTTGAAAATAGTTT  52 50
 CT43_CH2551 2602726 .. 2602764 + -15.6  -3.86897   GTAATTAATATAATA   TTAGAAATGACACTATCA AAT TGATAGTGTCATTTCTGC   TTTATAGGGAATGGA 100 37
 CT43_CH2553 2603891 .. 2603914 +  -3.2  -3.04517   GACGTAAAATCAGCG          TTTGCAGTAA ACAG TTATTGCAAC           ATTTTACAGAAAGAT  45 111
 CT43_CH2554 NONE
 CT43_CH2555 NONE
 CT43_CH2556 NONE
 CT43_CH2557 NONE
        dnaI NONE
 CT43_CH2559 NONE
 CT43_CH2560 2606805 .. 2606830 +  -9.8  -3.42699   AGATGGAAAAAATAA         CTCTCCGTAG CGCCCA CTATGGAGAG          TTATGATCAATAAAT  80 26
 CT43_CH2562 2607508 .. 2607523 +  -6.2  -3.69734   CAAAGATAGTTTTCT              TCTCAT ATCG ATGAGA               TTTCCGTCCATTCTT  63 211
 CT43_CH2564 NONE
 CT43_CH2565 NONE
 CT43_CH2566 NONE
 CT43_CH2567 2610444 .. 2610456 +  -4.8  -3.26471   TTTGACAAGGGGAAT                TCCG TATCT CGGA                TTGGTATAACCGTGA  53 415
 CT43_CH2571 2613698 .. 2613711 +  -5.3  -3.11812   ACAAGAGTGAAAAGA               GCAAT TCGG ATTGC                TTCAGTCATCTACAT  55 261
 CT43_CH2573 NONE
 CT43_CH2574 2614173 .. 2614224 + -10.4  -5.45802   GGCTAGAAAACTAGA GGACACCAATTCATTAAAGCAGC AATTAAG GCTGTTTTAC-GAATAGGTGTCC TTTTTATTTTGAAAA 100 44
 CT43_CH2575 NONE
 CT43_CH2576 NONE
 CT43_CH2577 2615477 .. 2615487 +  -2.6  -3.90038   TTTAAATGTGATTTG                 TATT CTC AATA                 TTTCGGTTATTTAGT  51 49
 CT43_CH2578 2616514 .. 2616535 +  -2.3   -2.6547   AAAGTTAAAAAGAAT           TCACGAAAT CAAG ATTTCATGG            CTTATAAGTATATTT  40 305
 CT43_CH2580 2619077 .. 2619092 +  -6.8  -5.45802   ATAATCTATAAAAAA              GCATCC ATTC GGGTGC               TTTTTATTTTGAGGA  93 363
 CT43_CH2581 NONE
 CT43_CH2582 NONE
 CT43_CH2583 NONE
 CT43_CH2584 NONE
 CT43_CH2585 NONE
 CT43_CH2586 NONE
 CT43_CH2587 NONE
 CT43_CH2588 NONE
 CT43_CH2589 NONE
 CT43_CH2590 NONE
 CT43_CH2591 2627517 .. 2627535 +  -4.5  -4.72729   ATAAATTCTATCAAA             GGTGCTC TTTAT GAGTGCC             TTTTAATTTTGATTA  68 37
 CT43_CH2592 2627931 .. 2627944 +  -2.4  -3.38291   AAAACTTCCTAAATT               CGAA ATTGAA TTCG                TTGTGGACTTATACA  46 39
 CT43_CH2593 NONE
 CT43_CH2594 NONE
 CT43_CH2595 2635324 .. 2635342 +  -4.5   -5.4833   ATTGATAAGAAACCG             GAGCAGC CATAA GCTGGTC             TTTTTTATTGCCTAA  81 14
 CT43_CH2596 2635830 .. 2635843 +  -3.9  -3.15027   TCCTTGCTTTCGTTT               CTTTT CATA AAAAG                CTTTTAATACAGGGT  48 249
 CT43_CH2598 NONE
 CT43_CH2599 2638493 .. 2638506 +  -2.4  -2.80113   GTATATGTAAGATAA               CTGT CATACC ACAG                TATAGTACACTCATA  42 26
 CT43_CH2600 2639628 .. 2639661 + -10.4  -2.78384   GAATAGTTTGATGTA     TAACAAAGTCGCCC TTAATT GGACGGCTTTGTTA      TGTAATACGAAGAAA  80 211
 CT43_CH2604 2643434 .. 2643465 + -11.7  -3.58446   TTAAATACTAGTAAA      CAAATCCTGCTCG TTATAT CGATCAGGATTTG       TCATTTTTTTATGTA  95 37
 CT43_CH2605 2644407 .. 2644448 +  -7.5  -5.42131   AATGAAGTTTAATAA TCCCGTAATGACTTATC TTAATATT GATAAATCATTACGGTA  TTTTTTATGTAATTA 100 39
 CT43_CH2606 2644934 .. 2644946 +  -3.5    -4.431   TTATCTTTATCTTTC                TTATT AAC AATAA                TTTTGTGAGTAAATA  61 5
 CT43_CH2607 2645502 .. 2645530 +  -9.7    -5.252   AAACCTCTAATCACA        TAAGAGCATCC AATTGCA GGGTGCTCTTA        TTTTTTATGAAAATC 100 249
 CT43_CH2608 2647058 .. 2647081 +  -9.7  -4.75776   TTCTATTTTTGAAAG          GCTCGTATT TTTAAT AATACGAGC           TTTTTAAGTTGAATT 100 46
 CT43_CH2609 2647591 .. 2647621 +   -12  -5.93252   TTCGCATAAAGAGAA       GTGGGAGAGTAAAA CGA TTGTACTCTCTCAC       TTTTTTATTTTTCAA 100 32
        cypA 2649214 .. 2649243 +    -8  -5.36441   TATATGATTTGTGCT       GCCTCCTGT-TCA GAACA TGAAATAGGAGGC       TTTTTTATGTCGACA 100 260
 CT43_CH2612 2651176 .. 2651221 +  -4.1  -2.62184   GGATGACAAAGAGTA TCATACCTCCGAATTTTGTTA ATGA TAATAGAACAAGGAGGTGTGA TACTATGGCACAAGA  46 46
 CT43_CH2613 2651391 .. 2651413 +  -7.7  -4.81852   GTGTAAATGTTTGAA           GGGTAGCCA AATCG TGGTTGCCC           TTTTATTAATTATAG  87 35
 CT43_CH2615 2653346 .. 2653369 +  -7.5  -6.02919   AAATAAAAATCTTAA          CAAGGTGCA TACATT TGCATCTTG           TTTTTTTGTTTCTCA 100 35
 CT43_CH2616 2654027 .. 2654068 + -18.5  -5.05712   TTATAATTCATAGTT TAAAATCCAAAGCTTTTTT AAAA AGAAAAGCTTTGGATTTTA  TTTTTAATTATTTCT 100 28
 CT43_CH2617 2655061 .. 2655090 + -15.3  -5.45652   ATGTAATTAAAAAAA       GAAAAAAGAATCC AAAT GGATTCTTTTTTC        TTTTTTATTAGGGGT 100 35
 CT43_CH2618 2657271 .. 2657320 + -16.1   -5.5762   TCTTAAATCAATTAA TACCCAATAACAAAGCGATTAGT GAAA ACTAAGCTTTTTGTTATTGGGTA TTTTTTATATTTAAT 100 35
 CT43_CH2619 2659634 .. 2659663 +    -3   -4.9725   TTAAAATGGACGAAA      CGTCTCTAGCATTC ATGT GAA--CTAGAGGCG       TTTTTATCTGGGGAT  67 37
      lepB_2 2660333 .. 2660352 + -10.8  -5.82172   CCTTATCACGGTTAG            GCATCTAC ATAG GTAGATGC             TTTTTTTATGTTGAT 100 130
 CT43_CH2621 2661724 .. 2661761 + -13.7  -3.78934   AAATAGTCATAACTT   TATACAAGCATAGAGGT TCTC ACCTTTATGCTTGTAGA    TTCTTATCCAGCAAA 100 84
 CT43_CH2623 NONE
 CT43_CH2624 NONE
 CT43_CH2625 2665910 .. 2665928 +  -7.4  -4.70739   GGTATCCATTTTAAA             GCACTCTT TAA ACGAGTGC             TTTTACTTATTTTTA  80 27
 CT43_CH2626 2666205 .. 2666260 + -18.8  -2.76098   ATTGAAGATACTTAT GTATCGAAACAAATAAAAAAGGAGCG ACTA TGCTCCTTTTTTATTTGTTTTAATGC GTATTCTTATTATAT 100 78
 CT43_CH2629 2668636 .. 2668652 + -10.9  -6.04953   TATAACCTTTAAAAA              GCACTCA TAA TGAGTGC              TTTTTTTATTTATAT 100 53
 CT43_CH2632 NONE
 CT43_CH2633 2671472 .. 2671493 + -13.1  -2.62184   TTGTAGAAAATAAGA           GCAGTTAGC AAAA GCTAACTGC            TCATCTCCAAGGGGG 100 174
 CT43_CH2635 2674113 .. 2674143 +  -4.8  -5.45652   GTAGAAATAGAAAGA       GTGGATTCCT TGTGAGAGAGT AGGGATCCAC       TTTTTTCTTGCCACT  82 199
 CT43_CH2636 2674866 .. 2674879 +  -5.3  -2.94622   GCCCATTTTATTTAT               GTAAG GTTT CTTAC                TGTATAAATCTATAT  53 344
 CT43_CH2638 2676128 .. 2676158 +  -9.1  -6.12458   CTAACTAGTTTTGAA       ACCTCTTCCTATA CTTTT TATAGGGAGAGGA       TTTTTTGTTTTTTTC 100 57
 CT43_CH2639 2677475 .. 2677486 +  -4.4  -2.87132   GTATACTGTGTAAAT                CAAG AACA CTTG                 TATGTAAGGAGAGAG  49 242
 CT43_CH2640 2678120 .. 2678145 + -14.1  -5.60993   ATTTTCCTAAAAAAA         TTCCCCTTTGG ACAT CCAGAGGGGAA          TTTTTTTATAGGAAA 100 40
 CT43_CH2641 2680544 .. 2680571 +  -7.1  -3.66356   TAATCCAGGCATTTG        GAAGGAGCTGT ATGCAA ATAGCTCTTTC         TTTAGAGTTGCGAGT  70 38
 CT43_CH2642 2680938 .. 2680972 +   -13  -5.97979   CACCGCGATGATAAA     TCTCGTCCCTAAGATT AAA AATCTTGGGGGTGGGA     TTTTTTTATTGTTGT 100 209
 CT43_CH2643 2682258 .. 2682275 +  -8.3   -2.8294   AAGTGAAACTTTAAT             GAGGGGG GCAT CCCCCAC              TGATTATCAGCCCTC  68 35
 CT43_CH2644 2683627 .. 2683649 +   -10  -4.98255   TTAGTTAACGAGGAA           CCCTTTATTT ATT AAATAAGGGG           TTTTTGTAATTCCGC 100 115
 CT43_CH2645 2684417 .. 2684439 +  -2.7  -5.69262   AAACGAGTTATTAAA           GGCGTAC GAGTAAAAA GTACGTC           TTTTTATTTTTATAA  75 47
 CT43_CH2646 NONE
 CT43_CH2647 2685640 .. 2685666 +  -7.4  -5.72622   AGTATATGATAAGAA         GAAAATCGAGCA AAT TCCTTGATTTTC         TTTTTTATTTGTGAA 100 39
 CT43_CH2648 2686640 .. 2686658 +  -9.6  -5.72053   GTTATTAAAGTAAAA             CCCGTGAA TTA TTTACGGG             TTTTTTATTTAATTA 100 33
 CT43_CH2649 NONE
 CT43_CH2650 2687761 .. 2687772 +    -3   -2.6342   ATACTATATAGGATA                GTTT TTCA AAAC                 TCAGTTCATTTACAA  42 25
 CT43_CH2651 2688775 .. 2688814 + -25.4  -3.06915   CGCACATATAAAATA  GTCAAAGAAAAGGCACTC TAAG GAGTGCCTTTTCTTTGAC   TTGAATCACGTCCAT 100 54
 CT43_CH2652 2690481 .. 2690498 +  -7.7  -5.26247   CATTTTTCGGAAAAA             GATGGGG TTAA CTCCATC              TTTTATTTATTTTCC  91 15
 CT43_CH2655 NONE
 CT43_CH2656 2694957 .. 2694982 +  -2.5  -5.87996   AGAAAATACCAAAAA         CCGCAACTGGA AGAC TTAGGTTGTGG          TTTTTTTATTACTTC  79 103
 CT43_CH2657 2696001 .. 2696018 + -10.5  -3.65475   AAAGTAAAAATAAGA             GCCGTCC TGTT GGGCGGC              ATTTTATTTTAAATA  87 34
 CT43_CH2659 2697781 .. 2697797 +  -2.9  -3.63922   ATTATCCATCCAATT              CTAAGTC CTG GGCTAAG              TGTTTTAGAGAGACT  48 522
 CT43_CH2661 2699919 .. 2699929 +    -4  -4.57353   ATTTCAGTTAAATAT                 TGTA TGT TACA                 TTTTATGTAGTAAGC  65 114
 CT43_CH2662 2701359 .. 2701380 +  -9.5  -4.99972   TGGTTACTGAAGAAA           GGAATTAGC ATTC GCTAGTTCC            TTTTTAATGTTTTGT 100 54
 CT43_CH2663 2702395 .. 2702405 +  -2.6  -3.77639   AAAATTCATTCAAGA                 TTTT ATA AAAA                 TTATGTTATAAGTTG  51 4
 CT43_CH2664 NONE
 CT43_CH2665 NONE
 CT43_CH2666 2703939 .. 2703952 +  -2.5  -3.54935   TTGTTTAAAAGAATT               TATTA ACTT TAATA                TTTGGACGGAATTTA  46 172
 CT43_CH2667 2704285 .. 2704324 + -15.4   -2.7624   CCAAGTTATTTTATA  TGAAAGAAAGGTGTAAAA ACTA TTTTGCACTTTTCTTTCA   TGCTGTAATTTTGAT 100 52
 CT43_CH2668 2705380 .. 2705398 +  -3.1  -2.72344   AATAGGGCATAATTA             CTCCTAT AACAA AAAGGAG             TGATTGAAAATGAAA  42 29
 CT43_CH2669 2705700 .. 2705720 +  -7.6  -5.07275   ATATAACCTGCAAAA            GGCACTTC TTTAT GAAGTGTC            TTTTTGTGTATATGA  89 174
 CT43_CH2670 2707049 .. 2707068 +  -5.7   -5.5074   GCTTAATTTTAAAAA            GAGTCCT CATACT AGGGCTC             TTTTTTATTCCATTA  86 35
 CT43_CH2671 2707694 .. 2707728 +  -8.8  -5.72616   ATTCTAAAACTGCAA    GAACGTACTTT-GGA TAATCT TCCTAAGGTACGTTC     TTTTTTTATATCAGT 100 124
 CT43_CH2672 NONE
       dnaN2 2709522 .. 2709537 +  -4.8  -3.23711   CAAGCAGACTTTTGT              TTTATG AAAT CATAAA               TTAATACATTATAAG  54 68
 CT43_CH2674 2710644 .. 2710672 + -15.5  -5.28983   TAAATACAGAAAAAA        GAGCGAATTCTTT ATA AGAGAATTCGCTC        TTTTTATATTTTAAA 100 44
 CT43_CH2676 2712935 .. 2712956 +  -8.1  -4.86621   TAAAAATGCAAGAAA           CCTTAGTAT ATCT ATGCTAAGG            TTTTTAATTCGGGAT  90 38
 CT43_CH2677 NONE
 CT43_CH2678 2714311 .. 2714348 +  -7.4  -5.64304   TATGAATCATATCCA  TGCAATTCGTT-T-AATG CGTT CATTTAAAACGAATTGCA   TTTTTTATTGTCTTA 100 55
 CT43_CH2684 2720149 .. 2720183 + -12.4  -5.31877   ATCTAAAATAACATA     AAAAGGTAAAGCGTAT TTT ATATGCTTTACCTTTC     TTTTTTGTAATAAAT 100 120
 CT43_CH2690 2724318 .. 2724343 +  -9.8  -5.85737   AATCTAAATAAAAAA         CAATCCTGGC ATATTA GCTAGGATTG          TTTTTTTATTAATGT 100 47
 CT43_CH2695 2728007 .. 2728020 +  -3.9  -4.06582   AGGAAAATATTGATT               TGTAA TGCG TTACA                TATTTTCTTGTTAAA  58 28
 CT43_CH2696 2728305 .. 2728341 + -11.2  -4.13767   ACAAAAATATGTATA    AATAAAAAGATTAGGA TTCAC TCCTAATCTTTTTATA    TTTTGAGGTAGCACC  93 55
 CT43_CH2701 2732357 .. 2732401 +   -19  -3.22884   CATTTACACCAAAAA TAATAAAGATAGCCGCTTCT GAATA AGAACCGGCTATCTTTATTA TTCATAACTTAATAG 100 66
 CT43_CH2706 NONE
 CT43_CH2707 2737723 .. 2737759 +  -3.1   -4.9218   TATCTAGACCAAAAA   CAAACAACCTC-CCCT CTTAGT AGGACGAGTTTGTTTG    TTTTTGTAGTAACTA  65 6
 CT43_CH2709 2739211 .. 2739245 +  -8.2  -4.68424   TAACGGACAAAACAG    GCTATTCTTTC-TAT ACAATA ATAGGAAAGAATAGC     TTTTTCAATAAATTG  85 104
 CT43_CH2710 NONE
 CT43_CH2711 2740832 .. 2740870 + -11.9  -5.43414   CGATACATAGGGAAA   CGGGACATCATTTAGAT CATAC ATCTAGGTAATGTCCCG   TTTTTTATGTGTAAT 100 46
 CT43_CH2714 2745091 .. 2745116 +  -7.7  -5.63012   TACATATGAAAAAGA         GAGAAGAAC ATTGGTTA GTTCTTCTC          TTTTTGTTTATTTTT 100 328
 CT43_CH2715 2746443 .. 2746469 +  -8.9  -3.32498   ATCATTTAAATATAA        TAGCCGATTCTC ATTT GA-AATCGGCTA         TTAATATGTAAAATC  77 92
        secY 2767372 .. 2767398 +  -7.4   -5.8901   ATTAATTATAAAAAA         CACACTATATTT TAA AGACATAGTGTG         TTTTTTATTTTATAT 100 36
 CT43_CH2729 2772054 .. 2772068 +  -2.2   -3.2756   GCAAATGAAAATGTA               TAGTAT GGG ATATTA               TCTATTGTTGAGCTT  44 77
 CT43_CH2731 2774188 .. 2774213 +    -9  -3.27525   CAAATAATTAACAGA         AGGGGCACAA ATTGTA TTGTGCCCCC          TTCCATTTACAAACA  77 46
 CT43_CH2734 2776420 .. 2776451 + -17.6  -5.20783   CAATATAAGTAAAAA      GATGAGGTTTTCTA CATG TAGAAAACCTCATC       TTTTTATATTTACAT 100 29
 CT43_CH2742 2782439 .. 2782449 +  -8.2  -3.14931   TCAGCCCTCACCAAT                 CGGG CTG CCCG                 TTAATGCGGGATAAA  70 54
 CT43_CH2748 2787748 .. 2787777 +  -7.3  -4.26188   ACCGGGTTATATAAA       TAGCACACCTT CAATAAGT AAGGTGTGTTA        TTTTACATCTATAAA  76 23
 CT43_CH2750 2789291 .. 2789326 +  -9.3   -3.2964   TATGGTAAATAAAAA    GAATCCATTTTGA AAAAGATTGA TCAAAATGGATTC     TTATCCAGCAGGTTT  77 210
 CT43_CH2758 2796204 .. 2796225 + -10.2   -4.7629   GTATCTAAATAGAAA           GACCAGTC TTATAC GACTGGTC            TTTTTACATTCATAC 100 29
 CT43_CH2762 2798913 .. 2798945 + -12.2  -4.52143   TAATAAAAAATCAAA      CCACTATTCTCTTA TTTGT TTAGAGAATAGTGG      TTTATTATATTTCCA 100 54
 CT43_CH2769 NONE
 CT43_CH2770 2805842 .. 2805889 + -12.4  -4.17987   ACTAAAATAAATGCT TAAATAAACAAGAAACCATTTA GTAG TAAATGGTTTCTTGCTTATTAG TTATTTCATTATTTG 100 23
 CT43_CH2777 2809223 .. 2809246 +  -6.2  -5.22794   GGATGCAATAAAAAA          CACACTTTGTA GTA TA-AAAGTGTG          TTTTTTGGTCATTAT  84 44
 CT43_CH2780 2812328 .. 2812355 +  -6.3  -4.94672   AAGGATTAATAAAAA        GGCTAGAGAAT TAATAT GTCCTCTAGCC         TTTTTCATCTTATTT  82 32
 CT43_CH2783 NONE
        rpiA 2814790 .. 2814809 +  -7.2  -4.88711   GGAATTGTAATAAAA            GCTAACTT TTTA AAGTTGGC             TTTTTAGTATGTTCT  86 31
 CT43_CH2785 2815337 .. 2815373 + -16.9   -5.5112   TTATCATAATAAAAA    GGGTAGTGTATGAAT CTTATGT ATTCATACACTACCC    TTTTTTATTAATAGA 100 32
 CT43_CH2802 2828119 .. 2828129 +  -5.4  -3.73224   AGAATACTAGATTCT                 GCTT CAA AAGC                 TTTAATAAACGCTCC  59 355
 CT43_CH2803 2829026 .. 2829044 +    -6   -4.1964   CCGCAATTGTTTTCA             CATCTGCA TTT TGCAAATG             TTTTACCGTCTTCAC  69 480
 CT43_CH2805 2832040 .. 2832064 + -15.1  -5.10154   GCAGCTTGATAAAAA          TGAGTCCGGTA TTG TACCGGGCTCA          TTTTTAATTTTGCCT 100 103
 CT43_CH2812 2838641 .. 2838660 +    -8  -3.15663   CTTTAATCAGAGTAG            GTATTACT ACTA AGTAATAC             TTAATAAAAATAAGT  70 48
 CT43_CH2813 2839171 .. 2839196 +  -9.9   -5.4505   AAAAATACAAAAAAA         GAAAGCATCTA ACTC TAGATGTTTTC          TTTTTTATTGAAAAC 100 43
 CT43_CH2817 2842019 .. 2842042 + -12.6  -4.50193   ACGAATAAACAATTA          TAAGGATAGC TAAC GCTATCCTTA           TTTTAATTCGTTAAT 100 33
 CT43_CH2822 2847120 .. 2847144 + -10.2   -5.4833   ATTTCACATAAAAAA          CGTTTTAAAC ATAAA GTTTAAAACG          TTTTTTATTCAATGC 100 106
 CT43_CH2830 NONE
 CT43_CH2831 NONE
 CT43_CH2832 NONE
 CT43_CH2833 2858586 .. 2858613 +    -7  -4.58424   TGCACATACTAAAAA        GAGCTGCTGATA TTAT TCTCAACAGCTC         TTTTCTCTACTCATC  79 16
 CT43_CH2836 2860393 .. 2860412 +  -7.2  -5.60993   TGAAGCCTTAAAAAA            TAGGAGCA GAAA TGCTTCTA             TTTTTTTATAACGGA 100 30
 CT43_CH2839 2863143 .. 2863172 + -10.1  -4.87328   AGAATATAATAAAAA       CCGCTATAAATTC ATTC GGAATTATAGCGG        TTTTCTATTTATATA 100 40
 CT43_CH2840 2863527 .. 2863551 + -12.9  -4.20027   TCTATACTAAAAAAA          TCGGAACGGCT CAT AGCCATTCCGA          TTTCTATACTTTATT 100 31
 CT43_CH2848 2871772 .. 2871796 + -11.6   -2.7263   TATATTCATTCAATA          TAAAAAGCCC AATCC GGGCTTTTTA          ATTTGGCAAACTAAT  86 23
 CT43_CH2858 2881349 .. 2881359 +    -4  -3.87627   ATCTCCTTAACCGCC                 CAAT CTT ATTG                 TCTTTTGTGTACGGA  56 430
 CT43_CH2866 2888471 .. 2888496 +  -9.7  -5.42198   TTCTCCCTTGGAGAG         GAGCAGTAAGC TTTT GCTAGCTGCTC          TTTTATTTTTTCAAA 100 246
 CT43_CH2869 2891055 .. 2891078 + -15.4  -4.87893   CATACATACGAAAAA          GCTCCTTTCC AATT GGAAAGGAGC           TTTTTCATTACGCTT 100 49
 CT43_CH2875 2898038 .. 2898062 +   -13  -4.63184   GTTTACAACTAAAAA          CACCTCACTT AAAGA AAGTGAGGTG          TTTTTGAAATCACTT 100 133
 CT43_CH2887 2904537 .. 2904589 + -16.7   -2.7165   CTAGTATTTGTCCAA GCTA-ATTCGTCACCTCCTCATAT TCTAGT ATATGAGGAGGTGACGAATATGAC TCATATCATTGATTA 100 145
 CT43_CH2888 2905054 .. 2905078 +    -8  -5.80951   TTGCACTTGAGAAAA         GCAAG-ACGTA GTTA TACGTTCTTGC          TTTTTTATTTTCCCT 100 60
 CT43_CH2889 2906509 .. 2906548 + -10.2   -4.4648   AATTTATAAAATAAA  CAAAGAAGTATGGATATA ATAT TGAAGCCATACTTCTTTG   TTTTATAATACGCCT  93 32
 CT43_CH2890 2906968 .. 2906998 +  -6.3  -4.18676   TAGGCTATGGTACTA       GCATGAATCTG ACTTTACAC TAGATTCATGC       TTATTTAATTTCTCC  70 38
 CT43_CH2891 2907505 .. 2907524 + -10.8  -4.05026   ACATTTCAGAGGAAA            CGCAGAAA ATAT TTTCTGCG             TTATTTCACTTTAGA  93 43
 CT43_CH2892 2908991 .. 2909013 +   -12  -3.49048   AAATTAGTTCCCACT           CCCCTGCTTA AAT TTAGCAGGGG           TATTATTAATTGGAG  91 34
 CT43_CH2893 NONE
        coaA 2910347 .. 2910362 +    -9  -4.59773   GCTACGAAATAAAAA              GCTGAC TTTT GTCAGC               TTTTTAGAAATGGCA  90 29
 CT43_CH2902 2915246 .. 2915259 +  -3.9  -5.42198   AAGGAGGAATTCATT               TATGA CTTT TCATA                TTTTCTTTTTTACGA  77 52
 CT43_CH2903 2915383 .. 2915397 +  -2.2  -4.08945   CATACTACACTCAAA               TGTATT AAA AATATA               TTTTAAAGGGGTAAT  52 18
 CT43_CH2904 2915639 .. 2915653 +  -2.8  -3.44848   TTCAAAAAAATAAAT               TTTCTG AGT CTGAAA               TGTTTCATGAACGAC  46 102
 CT43_CH2905 2916099 .. 2916125 + -12.4  -3.95219   TATTTATAAACAAAA         GATACACCACTT AAA AAGCGGTGTATC         TTTCTCAGGTTTCAC 100 225
 CT43_CH2907 2918623 .. 2918645 + -10.6  -5.26918   AATTTACGATGAAAA           CCCGCAAG CGAATAA CTTGCGGG           TTTTTTATCCCGTAT 100 452
 CT43_CH2921 2930584 .. 2930600 +  -2.4  -3.76402   TAAAGAATATGTAGT              TTATAT TCTCT ATATAA              TTTCCTCAATCGACT  48 74
 CT43_CH2932 2937486 .. 2937507 +  -8.9  -5.58209   ATACTTTTGAGTAAA           CTTTTTTAC ACTT GTAAAAAAG            TTTTTTTGCATTTCC 100 84
 CT43_CH2933 2938406 .. 2938448 + -15.2  -3.09718   GATAATCGTATGTAA TGAAAAGACTTGATTCCC TTTAGCT GGGAATCAAGTCTTTTTG TCGTTTTGGGAATTA 100 26
 CT43_CH2934 NONE
 CT43_CH2935 2940028 .. 2940061 + -14.1   -4.0098   TGGTATATTTACAAA     TAAAAAGCGCTATTC ATAT GAATAGCGCCTTTTA      TTATTTAGCTTCCCC 100 47
 CT43_CH2947 2960967 .. 2960996 +  -4.3  -5.53079   TAACATTTTAATGCA       GGAGCACC-CTT TTTAATT ATGTGGTGCTCC       TTTTTTGTATATTTT  83 38
 CT43_CH2951 2963151 .. 2963177 + -11.8    -3.675   GTTGCGATACAAAAA         CAAGACTAATAT AAT ATGTTAGTCTTG         TTATGTACTTTGTGT  95 17
 CT43_CH2956 2968665 .. 2968695 + -13.6  -2.84732   TAATATATCAAAATA       TAAAACATCCATTT TTT AAATGGGTGTTTTA       TATACTAAGTTTACA 100 56
 CT43_CH2957 2969438 .. 2969455 +  -2.8  -3.06696   TTGGGCTCCCGATGA             GTTTAT CGATAA ATAAAC              TGTCTTCACGAAGAA  43 10
 CT43_CH2958 2969941 .. 2969962 +  -2.9  -5.47431   ATGTAATTCAAAAAA           AGCTTAGGA TTTC TCCGAAGCA            TTTTTTGTATGTTAC  74 41
         mqo 2973007 .. 2973025 + -10.3   -6.0427   AAGAAATAAAAAAAA             CGTCCGA TATAT TCGGACG             TTTTTTTTGTCTACT 100 43
 CT43_CH2965 NONE
 CT43_CH2966 NONE
 CT43_CH2967 NONE
 CT43_CH2968 2981377 .. 2981399 + -10.7  -5.37593   GAATTAATGTAAAAA           GACAGACTA TTTAT TAGTCTGTC           TTTTTTACTTTACAG 100 34
 CT43_CH2973 2986238 .. 2986282 +   -14  -4.26189   TATGGTAAATAATTT TTATAATAAAAGACACTCAG GCCAA TTGAGTGTCTTTTATTATTA TTTTCGAATTTGTCC 100 33
       proC1 2990351 .. 2990367 +  -6.7  -4.69027   TATGATTGTGTAATT              TTATTAG AAA CTAATAA              TTTTTCAATGCATTT  79 221
 CT43_CH2979 2994509 .. 2994551 + -14.4  -2.88731   ATATTTGACGATACA TAAAAGACCACACATGGCGT TTC ACTTCATGTATGGTCTTTTA TCGTTCCTTCTCTCA 100 40
 CT43_CH2980 2995263 .. 2995301 + -13.5  -2.87289   AAAAAAGTCGATTCC   TTTAACTCCACAGGAAA TCGAT TTTTTTGTGGAGTTAAA   CTTCTTAGCTTTGTA 100 97
 CT43_CH2981 2996195 .. 2996227 +  -4.9    -4.652   AATTCCCCCCAAAAA      CGAAATTTCGCCACA AGT TGTCACAAAATTTCG      TTTTTGGGGTAGTTT  69 121
 CT43_CH2982 NONE
        accA 2997977 .. 2997987 +    -4  -3.29263   TAAACTGGGATATGC                 TGAT ACT ATCA                 TTCTACAAAAGATGT  49 116
 CT43_CH2984 2998562 .. 2998592 +  -9.9  -4.54047   CTCTTTAAACAAAAA      CTCCCCTTAAATCG AAAA TGAT-TAAGGGGAG       TTTTATATACGATGC  93 245
 CT43_CH2989 NONE
 CT43_CH2990 3006748 .. 3006771 + -11.1  -5.29846   GATACCAAGTAAAAA          GAGTCCTTC ATACGA GAAGGACTC           TTTTTATTTCACATT 100 29
 CT43_CH2997 3010018 .. 3010050 +  -9.3  -4.82855   ACAATGTCATTACTA      TCCCTTTTAGAAATA GAT TTTTTCTATAAGGGA      TTTTTCCATTTAATA  93 40
 CT43_CH3001 NONE
 CT43_CH3002 NONE
 CT43_CH3003 3014789 .. 3014810 + -11.7  -5.01535   ATAACGTAACAAAAA           GACTCCTAT ATTC ATAGGAGTC            TTTTTATACTTCTAC 100 37
 CT43_CH3006 3019523 .. 3019564 + -19.1  -3.11096   TTTAAAAATATAAAG CCAATATATCCCTGTTCTA TAAT TAGAACAGGGATATATTGA  TATAGTTTAATTTTT 100 122
 CT43_CH3015 3031452 .. 3031470 + -10.3  -4.74453   TTATTAAAAGTAAAA             GAGGTGC AATTC GCACCTC             TTTTTGCATGTATTG 100 34
 CT43_CH3018 3033620 .. 3033648 + -14.8  -5.01732   GGTAGATTCATATTA        GGACTCTGTTTA ACCAA TAAACAGAGTCC        TTTTTTCACAAGATT 100 36
 CT43_CH3022 3037945 .. 3037988 + -12.8  -4.55625   ATAGATTAAAAAGTA CTTCAACACCT-TGCAATTAT TTA ATAATCGTATAGGTGTTGAAG TTTTATAATCTTAGT 100 92
 CT43_CH3028 3041447 .. 3041473 +  -9.5  -5.30348   TTACAAAAACCAAAA         GGATCTCCTTC TATAT GAAAGAGATCC         TTTTTATTGTTAACT 100 8
 CT43_CH3030 3043962 .. 3043973 +    -3   -3.0771   GGTATGTGAAAATAA                CTTT AAAT AAAG                 CTTTCTCGTTTGACA  45 16
 CT43_CH3031 3044938 .. 3044960 +    -2   -4.7497   GGTAGTGGTTTTATG           TACTTTTCTC TTA GAAAAACGTA           TTTTTAATACCTACG  62 481
 CT43_CH3039 3050806 .. 3050827 +  -5.8  -5.98675   CATAACTATAAAAAA           TACCGCCC AATTTA GAGCGGTA            TTTTTTATTTTTCTA 100 36
        lysP 3053446 .. 3053469 +   -14   -5.4505   TAAAATAAAGTGAAA          CGAGCAAACA AATT TGTTTGCTCG           TTTTTTGTTGCAAAC 100 33
 CT43_CH3042 NONE
 CT43_CH3043 3054677 .. 3054713 +  -6.1  -5.55664   TATATTAAACAAAAA   CGCTA-TCTTTTCCTA TGATTC TAGAAAAAGAATAGCG    TTTTTTTACTCGTCC  93 42
 CT43_CH3050 3062738 .. 3062770 + -17.9  -3.30038   GCGATTCGTGACTAA      CGGAAAAGAGGTGGC AAA GCCACCTCTTTTTTG      TTCCGTTTACGTATG 100 26
 CT43_CH3052 3064234 .. 3064262 +  -6.1  -3.69359   AAAGTGAAACTTTAA        TAAGTGGGG TTTTGCTCATC CCCCACTTA        TTCTATCATTTTCAT  64 34
 CT43_CH3067 3077948 .. 3077978 + -11.2  -3.53563   TCCTGCACATAAAAA       GCACGCGTTCGATT ACT AATCAAACACGTGC       TTTCAAAACAACTAT  87 161
 CT43_CH3071 3081353 .. 3081401 + -14.9  -4.34263   TAAGAATATCCCGCT TTTAAACAAAAGAAGCCCTCTTT TTT ACAGACGGCTTCTTTTGTTTAAC TTTATCTTATTAAAA 100 38
 CT43_CH3077 3086280 .. 3086306 + -18.2  -5.77853   TTTCATCACAAAAAA         GCCGTTTCACTA ATT TAGTGAAACGGC         TTTTTTTTAAGCGTT 100 98
 CT43_CH3079 3088349 .. 3088376 + -12.8  -3.47751   GTTTCTGTAAAAAAA        GCTGTTGAAAGG ACTC CCCTTCAACAGC         TTCTACATTATTAAC 100 91
 CT43_CH3085 3096290 .. 3096308 + -11.8  -3.44792   GATAGTATACATTTA             GTGCTGAT TAA ATCAGCAC             TCTCTTTTAAATTAA  91 63
 CT43_CH3086 NONE
 CT43_CH3087 3097756 .. 3097768 +  -3.4  -3.76402   AGGTATCTGCTATCG                CCAT AACTG ATGG                TTTAGTCACTGCAGT  52 118
 CT43_CH3088 3099514 .. 3099544 + -13.4  -3.89346   CTTTGCTTTCTAAAT       CAAAACCACCGGTA TAA TGCCGGTGGTTTTC       TTTCTACAATAAGGA 100 28
 CT43_CH3101 3111468 .. 3111491 + -11.8  -4.46254   AGCAAATAAATAAAA          GAGCCAATTC ATAC GAGTTGGCTC           TTTATTCTCTCTTCC 100 28
 CT43_CH3110 3122369 .. 3122404 + -13.5  -3.33509   AAACTCAAAATAAAA    CCCCAATTTCTCTAT ATTAAA ATCGAGAAATTGGGG     TTAAGTTATTTAAAA 100 61
 CT43_CH3117 3127882 .. 3127911 + -12.3  -5.63103   TAACGAGAATAATGT       AAATAAGCTGTCC ATGT GGACAGCTTATTG        TTTTTTTGCTTAGCG 100 108
 CT43_CH3120 3131351 .. 3131371 +  -6.9  -5.86465   TTTTAAAGAAAAAAC            CTTACAGAA AGA TTCTGCAAG            TTTTTTTCTCTTATT 100 143
 CT43_CH3121 3132570 .. 3132582 +  -6.3  -3.09933   ATTCTCCCGATACTT                GGTAT CAT ATACC                TTGGATAAATTAGAC  59 176
 CT43_CH3122 3133756 .. 3133769 +  -3.8  -3.15574   CAAGCGTATTAAACG               GGAG TACCTT CTCC                TCTTCATGGGATTCA  48 519
 CT43_CH3126 3136133 .. 3136149 +  -6.7  -3.00774   ATTTTTTAGCACGGC              TAATTAC ATG GTAATTA              TCTATCGTTAAACTG  62 91
 CT43_CH3127 NONE
 CT43_CH3131 3140809 .. 3140830 + -10.3  -5.07275   ACTAGTAAACAAAAA           GAACATTGA TATT TCAATGTTC            TTTTTGTATCTCTAC 100 112
 CT43_CH3134 3145545 .. 3145559 +  -7.2  -3.18634   CCGCTACACTATCTG               TAGCAA AAG TTGCTA               TCTCATTTTCTTCAA  66 397
 CT43_CH3135 3146264 .. 3146293 + -12.3  -5.95166   TAACAAGAATTATGT       AAATAAGCTGTCC ATGT GGACAGCTTATTG        TTTTTTTTGCTTAGC 100 61
 CT43_CH3136 3147448 .. 3147473 +  -9.1  -4.84492   ACAACAATACTAGTG         GAGTTTTGCCT ACAG AGGTAAGACTC          TTTTATTGTACTTGA  93 48
 CT43_CH3145 3159128 .. 3159150 +  -9.2   -5.0538   ATAAACATGAAAAAA           CTCCTAACAA ATT TTGTTCGGAG           TTTTTTCAAATACGC  95 311
 CT43_CH3148 NONE
 CT43_CH3149 3162462 .. 3162487 +  -9.7  -2.72581   ACTATCAAAATAAAA         CCCCAGAAATC CAAT GGTCTCTGGGG          CTTCATTATATATTT  74 186
 CT43_CH3154 NONE
 CT43_CH3155 3170619 .. 3170646 +  -8.5  -3.30124   AAAGTGAAACTTTAA        TCAGTGGGG TTTGTTCATC CCCCACTGA         TTATGAGCCCTCACC  74 104
 CT43_CH3162 NONE
 CT43_CH3163 3179860 .. 3179889 + -15.2  -5.68438   AATGTCTATGTGAAA       CAGGACCTGATA GATGCA TATCAGGTCCTG        TTTTTTATTTAGTAG 100 84
 CT43_CH3166 3186649 .. 3186697 +  -7.5  -3.06831   TTGATAAGTTCATAA CAAAAACGCCATCTCTTCCTTTG ATT CTAGGGAAAGAATAGCGTTTTTG TTACGTAACAATTAA  67 245
 CT43_CH3178 3197809 .. 3197821 +  -4.9  -3.32268   ATTATAAAAATTACA                TAATC ATA GATTA                TTATGCAAATACTTC  54 34
 CT43_CH3179 3199095 .. 3199108 +  -6.7  -3.61398   TCCCTTCTCTAAGAA               GCCTA TGCA TAGGC                TTCTTAAGGAAGAGA  67 73
 CT43_CH3180 3200940 .. 3200963 + -12.6  -5.55664   AAAAAACAAAAAAAA          GAACTCTTAC AATT GTAAGAGTTC           TTTTTTTCATCATAC 100 47
        arsR 3203512 .. 3203522 +  -5.4  -5.81412   AAAAAAGAAGAAAAA                 TCGT AAT ACGA                 TTTTTTTTACATAAA  91 20
 CT43_CH3184 3205322 .. 3205334 +  -4.9  -3.59202   TGATTAACATTCTCC                CAAAT GGT ATTTG                TTGTCTCTCCAGCTG  57 501
 CT43_CH3191 3211582 .. 3211596 +  -5.8  -2.90075   ATGTCTGTGAATTGG               TACTTT TTA AAAGTA               TATAATTGGAGGGAG  56 62
 CT43_CH3192 3212043 .. 3212071 + -11.1  -5.06816   ATAATTTAGTGGAAA        GGACATTTCTTGT AAT ACTAGGAATGTCC        TTTTTGTTGACGAGT 100 37
 CT43_CH3201 3219745 .. 3219781 +  -8.1   -3.1382   TATTTCGAAGATGGA    AACAGCCTACTATCA AATTAAA TGATAGTAGGCTGGC    TGTTAAAATTATTTA  70 5
 CT43_CH3206 3226823 .. 3226848 +  -9.8  -5.58454   TAGATTATTAAAAAA         GGTGTCAATC AAGAAA GATTGGCACC          TTTTTTTAATGTAGA 100 38
 CT43_CH3214 NONE
 CT43_CH3215 3234979 .. 3235012 + -14.2  -4.84539   TCCGCTTAACGTTAA     TAAGGAAAGTAAAC TTCCCC GTTTACTTTCCTTA      TTTTGTATTTCCTTC 100 32
 CT43_CH3216 3236420 .. 3236445 + -14.9  -5.71638   CAATATAATAAAAAA         GGATCTCTCTT GATA AAGAGAGATCC          TTTTTTTACTTCTTC 100 113
 CT43_CH3217 3238269 .. 3238282 +  -5.3  -3.53761   GTTTCAACGCTGTTA               TCCTT AAGT AAGGA                TTTAAAAACAGCTTG  58 292
 CT43_CH3220 3240008 .. 3240024 +  -6.6  -5.48825   TTATTTAAACGAAAA              GCTAGT TTTAT ACTAGC              TTTTTTTACATAATA  93 33
 CT43_CH3225 3242417 .. 3242438 + -10.9  -5.44119   ACAAGATTGAAAAAA           CTTCCCATC ATAA GGTGGGAAG            TTTTTTTCAAATGGC 100 31
 CT43_CH3233 3251844 .. 3251868 + -15.9  -3.49951   GTAAAAATATAAGAA          GGGATTGATCA TAA TGATCAATCCC          TTCTATCAAAATATA 100 117
       hisS1 3260801 .. 3260818 +  -8.4  -5.32599   TATTTATAATACGAA             CCACCC TCGTTT GGGTGG              TTTTTCTATTTTATA 100 32
 CT43_CH3242 3261322 .. 3261342 +  -5.5  -5.85011   TAGGTCGGCAAAAAG            GATTTACTT TTT AAGTAAACC            TTTTTTTCATTTTTA  91 79
 CT43_CH3243 3262093 .. 3262144 + -15.6  -2.63853   AGTTAAAAAGTAAAA ATATAGAAATAAAAGGTGTTTTCA CGTA TGGAAACACCTTTTATTTCTACAA CTATTTCACATATCT 100 28
 CT43_CH3245 3263457 .. 3263471 +  -3.6   -3.1793   TACGTATGAATTTGG               TTTTTC ATG GAAAGA               TATGTTAGTATGTAT  46 108
 CT43_CH3246 3263814 .. 3263837 +   -11  -5.88471   AACAAGAGTAAACAC          GAGGGGGGAT GCAT ATCCACCCTC           TTTTTTTTACTCATC 100 30
 CT43_CH3248 3265671 .. 3265713 + -15.2  -2.97058   AAGCCTTCTGGTAAG AAAGAGAAAAAAGATATGCA TCT TGCATATCTTTTTTCTCTAA TACTTTACATATATT 100 27
 CT43_CH3249 3266712 .. 3266731 +  -7.9  -4.11216   ATAACAACCAAAAAA            GCCTACT GACACG AGTAGGC             TTTTGAAACTACGAA  77 58
 CT43_CH3256 3271893 .. 3271924 + -15.4  -3.99806   AGGATAAATAAAAAA      TACCGTCATTCTTT CCAA GAAGAATGACGGTA       TTTCTCATCGATTAT 100 30
 CT43_CH3262 NONE
 CT43_CH3263 3278377 .. 3278415 + -14.8  -3.51329   AAAATAGAAATCAAA   CAACCTCATTTCCCGT CATTACA ACGTGAAATGAGGTTG   TTATCGTTCACCGTA 100 34
        dxr1 3285476 .. 3285505 + -16.7  -5.62219   ATTGTTAATAAAAAA       GAGCTAAAACAGT TCCC ACTGTTTTAGCTC        TTTTTTTCATGTATT 100 19
 CT43_CH3274 NONE
 CT43_CH3275 3288066 .. 3288098 + -14.3  -5.57729   TTTAATATTAAAAAA      CACAAGGTGTGTCTT ACA AAGACATTCCTTGTG      TTTTTTATATTCTTT 100 53
 CT43_CH3280 3292810 .. 3292821 +  -4.4  -3.70102   ATTCTCCCTTAAATT                GGAT ATAC ATCC                 TGTTTCATTTTACAT  56 51
 CT43_CH3281 3293300 .. 3293312 +  -6.3  -3.14353   AACAAGTTAGATATA                CAGTT AAA AACTG                ATTTTAAAGTTGTTT  59 12
 CT43_CH3282 3293669 .. 3293700 + -11.8  -4.35926   TTTTTCATAAAAAAA      GAGAGGAATCTA CATCAAAA TAGATTCCTCTC       TTTTACATTTAGACT 100 65
 CT43_CH3287 NONE
        rfbF NONE
      rfbG_2 NONE
 CT43_CH3290 NONE
 CT43_CH3291 NONE
 CT43_CH3294 3304102 .. 3304124 + -12.8  -3.12749   AAGAAATAAAAAGCA           GGCAGAGATT CTT AGTCTCTGCC           TGTTCGCATTATTGG 100 32
 CT43_CH3297 3305857 .. 3305894 + -20.3  -4.52803   AGACCGAAAAAGAAA   TAATAAAAAGCAAAGCG ATAT CGCTTTGCTTTTTATTA    TTTTCTAAGTTTATG 100 23
 CT43_CH3309 3320242 .. 3320276 +   -11   -3.7108   ACAAGTAAAAAATAA    CAGCCGAATTTTTCT TATAGT AG-AAAATTCGGCTG     TTTGCATGTCGCAAT  89 136
 CT43_CH3317 3331671 .. 3331695 +   -13  -3.52918   ATGTAAGAAATAAAA          CAAGGTGATC AAAAC GATCACCTTG          TTCCTTTAAAAATTA 100 151
 CT43_CH3336 3349385 .. 3349432 + -11.6  -3.73262   ATAATAACTGTAGAA GACATAA-AATAGGTTGAGACAA TAC TTGCCTCAACCAGTTTTTATGTC TCTTTATAATTTTTT  93 37
 CT43_CH3338 3352093 .. 3352104 +  -5.8  -4.78512   AGAAACGACCATAAT                CACC AAGC GGTG                 TTTTAATTTGTTTTT  78 356
 CT43_CH3343 3356960 .. 3356988 + -14.7  -3.57792   ATAATAATGAAACTT        TAATCAGTGGGAG CAT CCCCCACTGATTA        TTTACCCGTAAATAC 100 37
 CT43_CH3344 3357574 .. 3357598 +    -8  -5.84381   ACAAGAAATAAAAAA         TACTACC-TCC AAAT GGAAGGTAGTA          TTTTTTTATTAATCA 100 154
 CT43_CH3351 3363510 .. 3363536 + -10.2  -5.47159   TGTTGAACAGATAAT         GAAAGTCCGG ATGTATG CCGGGCTTTC         TTTTTTATATTAAAA 100 27
 CT43_CH3358 3369631 .. 3369667 +  -3.9  -5.79595   CTTAAAAATAAAAAA   CGCTATTC-TCTCTGT AAAATC ATAGAAAAGAATAGCG    TTTTTTATTTTGAAA  86 404
 CT43_CH3370 3382366 .. 3382385 +  -7.8  -4.46155   TGATAAATAATAAAA            GCACGGAA AATC TCCCGTGC             TTTTCTAAATATATA  82 123
 CT43_CH3379 3389709 .. 3389728 +  -2.8  -5.43621   TGGTGCAGTGAAAAA            GATTACCC AAAT GGATGATC             TTTTTTATAATTTAT  72 30
 CT43_CH3381 3391624 .. 3391643 +  -5.8  -3.46913   TCCAAATGTTCTAAC            TGCACTTCA ACA TGA-GTGCA            TTCTAAATTATGTAT  61 165
 CT43_CH3386 NONE
 CT43_CH3387 NONE
 CT43_CH3388 3395928 .. 3395951 + -11.1  -4.79756   TTTTTAAACGAAAAA          GTCATGAGC ACGTAA GCTCATGAC           TTTTTGCATTATATA 100 34
 CT43_CH3392 3401226 .. 3401248 +  -7.8  -4.21462   CTCATTTACATAAAA           GAAAGAGG AAGCTCC CCTCTTTC           TTTTAAATCATCCCT  80 44
 CT43_CH3396 3403622 .. 3403643 + -10.1  -5.03994   CTTCAACAAGAAAAA           GCGCCATCA CAAG TGACGGCGC            TTTTTCTATGTAAGA 100 77
 CT43_CH3399 3406338 .. 3406362 + -17.3  -5.14563   TCGTCAAATCCAAAA          GGTTTGCAGCA TCG TGCTGCAAACC          TTTTTTCATCACCAA 100 64
 CT43_CH3405 3411504 .. 3411543 + -20.3  -4.81734   CTGATTATGTAAAAA  CAGTTAGCCCATCATTC ATTAGA GAGTGATGGGCTAACTG   TTTTTAGTAATATTT 100 43
 CT43_CH3408 3414029 .. 3414057 + -10.5  -3.10474   ATGAATACAAAACGA        GCATGTTTTGA AATCCAA TCAAAACATGC        TCTTAAAATATTCTA  83 73
 CT43_CH3412 3417395 .. 3417428 + -14.1  -4.27843   CATAATTCACAAAAT     GAAAAGGAAGCTAGA TTTC TCTACCTTCCTTTTC      TTATTTCTATTTGAG 100 36
 CT43_CH3416 3422139 .. 3422172 + -15.5  -4.72272   TGCACAATATAAAAA     GAAGAGGTAGACTTA TATT TCAGTCTACCTCTTC      TTTTTCATCACCAAA 100 132
 CT43_CH3418 3424733 .. 3424753 + -10.5   -4.4267   ACTATAAGTATGTAA            GCCTTGTTA TTT TAGCAAGGC            TTTTCAATTTTCAGC  95 34
       pepF2 3426633 .. 3426658 + -14.1  -5.01042   TCAGCATTATAAAAA         GCATGCAGAGT ATAT GCTCTGCATGC          TTTTTCATTTGAATT 100 29
 CT43_CH3427 3434829 .. 3434852 +  -3.9  -3.76534   CAACAAATAAAAAAA          GAAATGTCG CTCATT CAACATTTC           TTTAGACTTTCTTCA  56 70
 CT43_CH3429 NONE
 CT43_CH3430 3437568 .. 3437594 +  -8.1  -4.26634   GAGTTAAATTAAAAA         GGGTATACC TAAAACACT GGTATACCC         TTTTCCACTTATTTT  83 29
 CT43_CH3434 NONE
 CT43_CH3435 3442424 .. 3442457 + -12.7  -2.95787   AAAAATTAAATAATA     ATAAAACCTCCATTT TTAA AAATGGAGGTTTTAA      ATTTGCTGTTAAATA 100 28
 CT43_CH3436 3444084 .. 3444114 +  -9.8  -5.36441   TTTAATATGTAAAAA       GATGCGTTCATATA AAT TGTGTGAACGCACC       TTTTTTATATCCCCC 100 44
 CT43_CH3437 NONE
 CT43_CH3438 3445610 .. 3445629 +  -7.9  -4.67011   CTTTAAAAAATGAAA            GACCTTC AATTAA GAAGGTC             TTTTTAAATACGCTT  82 35
 CT43_CH3444 3450201 .. 3450226 + -11.9  -3.96216   ATAACGCATAGTAAA         GAAGGTCGCCG TGAA TGGTGACCTTC          TTCTTTCCATACAAG 100 30
 CT43_CH3445 3451929 .. 3451962 + -12.7  -4.21607   ATTCATTATATGTCA     CAAAATAGAAGTCTT TTTT AGGACTTCTGTTTTG      TTTGTATTCAATACG 100 173
 CT43_CH3446 3453617 .. 3453633 + -10.9  -5.41359   CAAATTAGAAAAAAA              GAATCCC ATT GGGATTC              TTTTTTGATTTCATT 100 33
 CT43_CH3448 3457646 .. 3457669 +    -4  -4.30827   CCTGAGGTTCACAAA          TTCAATAATA ACTT TATCATTGAA           TTTCATTTTCCTTTT  60 57
 CT43_CH3449 NONE
 CT43_CH3450 NONE
 CT43_CH3451 3462414 .. 3462443 + -13.8  -4.74103   TGACATAGCGTCAAA       GCCTAAATTCCT AAATTA AGGAATTTAGGC        TTTTTGAGTTCGCAA 100 248
 CT43_CH3453 3463880 .. 3463902 +  -9.2  -3.71873   TAAATAAAAGCCAAA           TAGCCGTTCA TAA TGAACGACTA           TTTGCATCTAACTAA  80 127
 CT43_CH3459 3476546 .. 3476580 + -10.2  -3.69323   GACGTGTTGAAAAAA     GCCTAATTTCTCTA CAATACA TTGAGAAATTAGGC     TTTAAATAGTAATAA  86 104
 CT43_CH3464 3482496 .. 3482529 + -10.6   -5.4387   CTAAAATGATAAAAA     TAAGCACATCTTGTT ATAAA AACA-GATGTGCTTA     TTTTTTAATTTCTAT 100 59
 CT43_CH3466 3486827 .. 3486844 +    -7  -5.19879   AATAATTACTAAAAA             CCACTC ATATAA GAGTGG              TTTTTCTATTTCCCC  88 104
 CT43_CH3468 3489623 .. 3489650 +  -8.6  -3.21194   ACTTAATATTTATAA        CTATTCTTACAT CGTG ATGAAAGAATAG         TTCATCGACTTTATC  74 215
 CT43_CH3471 NONE
 CT43_CH3472 3495315 .. 3495348 +   -17  -4.51699   ATTACGTATCAAAAA     GAAGCTAGAAAGTG ATTAAA CACTTTCTAGCTTC      TTTTATACTGCTTCT 100 11
 CT43_CH3478 3500684 .. 3500712 + -19.1  -2.52543   GAAAAATAAAATTTA        TATAAGGAAGGGG CTC CCCCTTCCTTATA        TAAATTGACGAAAGT 100 44
 CT43_CH3479 3501898 .. 3501918 +    -9  -5.10163   ATATCTGTTTTTACT            GGGCGCTT TTAAT AAGCGCTC            TTTTATTTTGAGCTT  95 51
 CT43_CH3489 3508003 .. 3508054 +  -7.6  -5.38047   AATGAATCTATATGA TTAAAACAAAAAGAGCATCC AATTATTTTTCA GGATGCTCTTTCTGTTTTTA TTTTTTATGTCCATG 100 26
 CT43_CH3491 3516385 .. 3516429 + -14.5  -3.49951   ATTATTAGAATTGAT GAATAACAAAAAGGTGTGCTA AAA TTGCACACCTTTTTGTTTTAC TTCTCTAAAAATATA 100 20
        dhaS 3524690 .. 3524733 + -17.9   -3.2313   TGGCTTAACTTAAAT TAATGAGAAAGAACCTGACC TATCC GGTCAGGTTCTTT-TCATTA TGTATTCCTTTAAAC 100 23
 CT43_CH3500 3525809 .. 3525851 +  -7.3  -5.48825   AAGGGACCTACTACC CA-ACAAAATAAACCGAGAG ACAT CTCTCGGTTTATTTTCTATA TTTTTTTGCATAATG 100 68
       gerSA NONE
       gerSB NONE
       gerSC 3545400 .. 3545443 + -14.9  -2.85056   GGATTATTAAATAGA AAAAACACGCTACTTGTTC TTATAT GAATAAGTAGCGTGTTTTC ATTTCCATTACAAGT 100 27
 CT43_CH3527 3554632 .. 3554655 +   -14  -5.63012   ATTTAACATAGTAAA          GAGTTGGCTA CCTT TAGCCAACTC           TTTTTCTTTATTTTT 100 35
 CT43_CH3540 3568369 .. 3568396 +  -4.1   -4.8048   TAGAATCACCAAAAA        GCCCTTTGGAT ATTTAA ATCGCAAGGGC         TTTTTCATATCAAAA  68 58
 CT43_CH3542 3569930 .. 3569958 + -11.9  -4.38712   TCACATATTCCTAAT        AAAAAAGACACGA AAT TCGTGTCTTTTTA        TTTTATAGAAATGAC 100 55
 CT43_CH3551 NONE
 CT43_CH3552 3582141 .. 3582158 +  -6.9  -6.07374   ATGAAAAATAAAAAA             ACGTGGC TTCT GCCACGC              TTTTTTATTTTTTCT 100 30
 CT43_CH3554 3583980 .. 3583999 +  -7.8  -5.63374   TACGATTACGAAAAA            AGGCTGAC AAAA GTCAGCCC             TTTTTTTCATATTAC 100 19
 CT43_CH3558 3585506 .. 3585543 + -21.6  -3.70902   CTAGAAAACAAATTA   GCCCCCATCATTTTAG ATATGA CTAAAATGATGGGGGC    TTTCAATATCAAACC 100 77
        sspO 3592815 .. 3592842 +   -10  -4.40181   ACCAGTAAAGAAAAA        TCCCAAAAGG TCTATTTT CCTTTTGGGA         TTTCTTCTAATGTTT  93 33
        sspP 3594200 .. 3594225 +  -4.2  -3.53779   ATTCTTCACCTCTGT         TTCAT-TCATG CATAA CATGATATGAA         TTGATATTTTACGGA  51 97
        cotM 3594652 .. 3594678 + -15.3  -3.55946   TAATATAATTCAAAC         TAAGCCCCAGT TGGTT ACTGGGGCTTA         TGTTATTTCGCATGC 100 45
 CT43_CH3570 3597745 .. 3597771 + -16.8  -3.00298   TGTAAAGCATTTTTA         GTAAGGATAGCT AAC AGCTATCCTTAC         TCTATACTTACAAAC 100 36
 CT43_CH3572 3598896 .. 3598927 +  -2.3  -3.90318   TATGTTCCTCAAAAA      GTAGACAACTAGT TACCTC GCTAGTCTTCTAC       TTTCTCAAATAATAG  50 14
 CT43_CH3579 NONE
 CT43_CH3580 3606781 .. 3606822 + -17.7  -3.60395   AAAGAACACAAGAAA GAAAAATAAAAAAAGAGCC CATC GGCTCTTTTTTTATTTTCC  TTCATTCTTCTCTAG 100 17
 CT43_CH3584 3609305 .. 3609336 +   -19  -4.21275   CTTTTCAGAAGAAGT      TAAAGACTAGGTGG GAAT CCACCTAGTCTTTA       TTTTGCATAAATTCA 100 23
        kinA 3611475 .. 3611505 +   -20  -5.44721   GTCTTAAGTAAAAAA       GAAGCATCTGCTAA TCG TTAGCAGATGCTTC       TTTTTTTAAAATGCT 100 34
 CT43_CH3598 3626339 .. 3626354 +    -9  -4.54477   GTAAAAAAGAAAAAA              GCTAGC ATTC GCTAGC               TTTTATACATTTTCA  90 21
 CT43_CH3601 3628063 .. 3628085 + -16.4  -3.95007   TCGTTTAAACTATAA           CGCTTGGTCA AAA TGACCAAGCG           TTCTTGCTTTCTATG 100 33
 CT43_CH3602 3628615 .. 3628635 +  -8.3  -5.33405   ATTTTCGATAAAAAA            GACAGCG CCTTTAA CGCTGTC            TTTTTATTTAGTACA 100 50
 CT43_CH3607 3631412 .. 3631439 + -13.6  -4.97957   TTATGGGATAAACGA        GAGAGGATTTTC ATTT GAGAATCCTCTC         TTTTATTGTTGTATA 100 75
 CT43_CH3608 3632638 .. 3632687 + -13.8  -3.19192   CTTAAACAATTCTCA TAAAAAAAGCCGTTCAAAGTGC ATCTCA GCACCCTGAACGGCTTTTCTTA TTAAGTTAAATCACG 100 23
 CT43_CH3612 3635966 .. 3636009 + -27.2  -3.75665   GAGCTAAAAAAAGAA CAATAAAGCGGAAATGCAAC TTAA GTTGCATTTCCGCTTTATTG TTTAATAAGGTGTAC 100 20
 CT43_CH3614 NONE
 CT43_CH3615 3638155 .. 3638188 + -11.3  -4.22927   TTGTCTTGGATACAT     TAAAGAAGCAAGTAT TTAC ATACTTACTTCTTTA      TTTATATATTGGTAC 100 23
 CT43_CH3617 3638923 .. 3638943 +  -6.8  -3.83998   TCGAACAAAAAGAAA            GCTGACCA TAAAT TGGGCAGC            TTTCATATCCGATCA  69 21
 CT43_CH3632 3654378 .. 3654415 +  -5.8  -5.30686   CCAAGTGTAAAAAAA   CGTTATTCTTTCTA AAAAGCTAAC TAGAAAGGATGACG    TTTTTTATGAATCTT  83 31
 CT43_CH3633 3656075 .. 3656108 +  -8.3  -3.15742   AAGACTACAAAAAAA     TGGGTTTCTTATATT CGCG AACATGAGAAACCCG      ATTTATTAGTCGTAG  70 242
 CT43_CH3634 3657134 .. 3657150 + -12.3  -4.65819   TTACAAATAAAAAAA              GATGGGC TTC GCCCATC              TTTTAATTTAATTTT 100 47
        lexA 3658869 .. 3658906 + -14.5  -5.63645   TAAAAATAATAAAAA   GAAGATAATTACCTTAT TTAT ATACGGTAATTATCTTC    TTTTTTGTATTTTGA 100 38
 CT43_CH3645 3666439 .. 3666461 + -10.7  -5.54907   TAAATAGCAATCTAA           CCTCTTTAC ATATC GTAAAGAGG           TTTTTCTTTTCTAAC 100 34
 CT43_CH3646 3666689 .. 3666714 + -13.4  -2.74192   TTATACACAAAAATA         GACGCACAGT TTATGT ACTGTGCGTC          TCCTCTTCGAGCATC 100 47
 CT43_CH3648 3668864 .. 3668898 + -20.4  -5.63517   TCAATACGCAGAAAA     TAGAAAAAACGCCTTA TTG TAAGGCGTTTTTTCTA     TTTTTTCTTTAAACA 100 4
 CT43_CH3649 3669658 .. 3669671 +  -3.7  -3.41051   GGTATAGGAGTTACT               GGACC TACT GGACC                TTCTGGTGGACCTAC  50 34
 CT43_CH3654 3673275 .. 3673304 +    -5  -5.13344   AATAATCCATAAAAA       GCGGCTGCTT ACATAATTTC AAGCAACCGC        TTTTTATATTAATAT  79 36
       chi36 3683669 .. 3683696 + -12.2  -5.28942   AAAAATAATAAAAAA        CAACAATAGGTT ATAG GACCTATTGTTG         TTTTTATTTACCGTA 100 33
 CT43_CH3666 NONE
        hup3 3686093 .. 3686118 + -13.5  -5.52986   TAAAATAATGAAAAA         TATCCTTCTCA TTTA TGAGAAGGATA          TTTTTTTCATAACAT 100 33
 CT43_CH3674 3692688 .. 3692705 +  -9.9  -5.22312   ACAATAAGGAAAAAA             GGTAAGC AATT GCTTACC              TTTTTTCCTATACGT 100 34
        adaA NONE
        ogt2 NONE
        alkA 3700629 .. 3700660 + -14.6  -5.10029   AGTACTATATTAAAA      GAACCAAGTAGCAC ATTC GTACTACTTGGTTC       TTTTTTACGCTTGCT 100 28
 CT43_CH3685 3702757 .. 3702790 + -12.6  -4.62163   TAATACAAATAAATC     CACCCTATTTACGA CTCTCA TCGCAAATAGGGTG      TTTCTGTTTTTATCT 100 50
 CT43_CH3689 3708219 .. 3708250 + -11.8  -5.20783   TTGAACAAATATAGT      AAAAAGGAAAGAAG ATAC CTTCTTTCCTTTTG       TTTTTCTATTTACAT 100 73
 CT43_CH3694 3713171 .. 3713186 +  -4.8   -3.2313   TGTTTAGATGCTTTT              TTTGTT CATA AACAAA               TATATTCCTTTCCAG  54 90
 CT43_CH3704 3723525 .. 3723549 +  -7.2  -5.76633   ATTTAAAATCATTAA          CAGACCTCTT CACTT AAAAGGTCTG          TTTTTTTCTATGTAA 100 42
 CT43_CH3705 3725266 .. 3725321 + -13.1  -3.05268   TGTAATATAACTACA TATTTAAAACTGTTGGTATTCAATT CTAATA AATTGAATGTCAACAGTTTTAAAAG TCTCTATCCATTTTC 100 180
 CT43_CH3706 3727537 .. 3727584 + -15.9   -3.4082   CAGAAAAATAATCTA TATATGAAAAAGGGAGCAACT TATTAC AGTTGCTCCCTTTTTCTTTTA TTCTACGCTTGTTTC 100 30
 CT43_CH3745 NONE
 CT43_CH3746 NONE
 CT43_CH3747 3776240 .. 3776259 +  -5.7  -5.17576   GAAGATAGATAAAAA            GGTTCTC TTAACT GAGAGCC             TTTTTTCACTTGATC  83 50
 CT43_CH3748 3776817 .. 3776836 +  -2.7  -5.60993   AACTTGTATAAAAAA            GCCGTCC AATTAA GGGCGAC             TTTTTTTATACACCA  75 103
 CT43_CH3751 3779493 .. 3779525 + -11.5  -3.39036   CCTTGACTTCTCATA      GTTGGTCTTTTTTGA CAA TAAAAAAAGACCAGC      TTATGGCTGCTCTAT  90 125
      gerPF1 3803228 .. 3803253 + -14.1  -4.80882   ACACATCCCTGTTTG         GAGCAGTTAGC TTTT GCTAGCTGCTC          TTTTTGGTATGGAAT 100 110
 CT43_CH3780 3804375 .. 3804399 + -11.6   -5.3104   CACACCTTGTGGGAA          GAATCCGTTT ATAAC AAACGGATTC          TTTTATTTTTGCTCA 100 246
 CT43_CH3793 NONE
 CT43_CH3794 NONE
 CT43_CH3795 3812315 .. 3812325 +    -4  -4.66537   ATTGATTACTGCTTA                 TCAA ATC TTGA                 TTTTATATTAACAAA  65 36
 CT43_CH3796 3813589 .. 3813615 + -10.9  -4.58644   CACTTAGTACTATCC         GAAAAGCCCTC TTTAT GCGGGCTTTTC         TTTTAATTATTACTT 100 257
 CT43_CH3798 3815654 .. 3815666 +  -3.4  -4.27584   GTGAACCCGTAAATC                CGAA ACCAA TTCG                TTTTCCCTTCAAACT  59 453
 CT43_CH3816 3834439 .. 3834452 +  -3.1  -3.35176   AAAAGAATTGTTCCG               TTTCC ATCT GGAGA                TTGGTCTCCTTCTTG  48 517
 CT43_CH3821 3839034 .. 3839046 +  -4.9  -4.09628   GAAAGTCAGTAATCG                CATTT AGC AAATG                TTCTTCTTTGAAGTC  63 29
        rpmB 3874735 .. 3874748 +  -8.1  -5.58454   TAATAATAAAAAAAA               GAGCC GATA GGCTC                TTTTTTTACTATAAC 100 38
 CT43_CH3875 3894564 .. 3894600 + -13.4  -3.24329   AATTAAAAGCGTAAA   TACAAAAATGCGTTGCT TATA AGCAACGCATTTTT-TA    TATTCGTTCACACTA 100 27
 CT43_CH3877 3897215 .. 3897225 +  -3.2  -3.33151   TTGCACATAGAATTC                 CTTC TCT GGAG                 TATTCATTTAAAGAG  46 69
 CT43_CH3878 3898000 .. 3898012 +  -4.9  -5.08169   GACAAATTCGATGCT                GAAAA CCA TTTTC                TTTTTTCGACTATAT  75 197
 CT43_CH3880 3900112 .. 3900137 +   -12  -5.32944   ATGTTTATCCTATAA         CGTAAGCAAG TGTTCT CTTGCTTACG          TTTTTTGCTTGTAAA 100 26
 CT43_CH3881 NONE
 CT43_CH3882 3901238 .. 3901259 +   -13  -5.63374   CAATAATATAAAAAA           CGACCGCG TTCCCC CGCGGTCG            TTTTTTTCATGTTAC 100 30
 CT43_CH3922 3945733 .. 3945785 + -31.3  -3.56558   ACAAATGAAGAATCG GCTTAAGAAATAAAAAAACAGCTGT ATA ACAGCTGTTTTTTTATTTCTTAAGC TTCTCTAACTTCTCA 100 20
 CT43_CH3926 3948544 .. 3948562 +  -8.9  -3.55296   AATTCCTATAAAAAA             CCTCTCT ATTTC AGAGAGG             CTTTTTCCTTATCCA  78 30
 CT43_CH3929 3951699 .. 3951718 +  -9.3   -3.6834   ACGTATAAAGAAAAA            CCCCGTT CACTTT AACGGGG             TTTGAAACTTTTCTT  80 11
 CT43_CH3932 3953668 .. 3953691 +   -11  -5.48063   ATTTCAATTAAAAAA          TCCCCCGCTA AATT TAGCAGGGGA           TTTTTTCTATTAGCT 100 47
 CT43_CH3939 3957819 .. 3957862 +   -25  -4.99035   GCGCATCAATATGAA CTGCACC-CCAATTGTTAGAC ACA GTCTAACAATTGGAGGTGCAG TTTTTCTATGGCTAA 100 50
 CT43_CH3941 3959492 .. 3959508 +  -3.7  -3.41013   AATCCCCATCCTAAT              CTAGC CTGATCT GCTAG              TTCTGGATATACTTC  50 293
        ctaA 3970557 .. 3970579 + -13.5   -5.0538   AATTTAAAACTAAAA           TCCCTTGCC AATTC GGCAAGGGA           TTTTTTGCAATAAAG 100 39
 CT43_CH3956 3976661 .. 3976682 + -14.5  -4.62783   ATTATTTAAAGAAAA           GGAGTGAGC TTAA GCTCACTCC            TTTTTACAATAAATC 100 32
 CT43_CH3959 3979065 .. 3979106 + -10.6  -4.59773   AGACGATTGGTAAAA TGTAAATAAGTCCTTA-CT CATAT AGATAAGGACTTATTTATA TTTTTCAGGCTCACG  95 28
 CT43_CH3963 3982014 .. 3982040 +  -5.2  -5.65177   CAATAACGCTAAAAA         GTAAGAAGCT TATACAT AGCCTCTTAC         TTTTTTTGTGGCTCT  87 35
 CT43_CH3966 3983957 .. 3983976 + -10.8  -5.01845   ATCGATAGTAGAAAA            CGGACAAT ATAT ATTGTCCG             TTTTTAGTTGTTATC 100 33
        speA 3986126 .. 3986143 +  -9.9  -5.82388   TATTAAAGAGTACAA             GCCTATC AGTT GATAGGC              TTTTTTTTCACCTTT 100 13
         tgl 3987049 .. 3987068 + -13.6   -5.3798   CAATTTATTAAAAAA            GCGCCTAC ACAT GTAGGCGC             TTTTTCTTATTATTA 100 30
 CT43_CH3974 3989001 .. 3989031 + -21.4  -3.81027   TGATGAAAATAAAAA       TAGCCCCTCTCTTA CAA TAAGAGAGGGGCTA       TTTACATTACTTAAA 100 441
 CT43_CH3979 3994628 .. 3994658 + -15.6  -3.89822   CGAAACAACTATGGA       AAGAAAAAGACGGC TTT GCCGTCTTTTTCTG       TTTATCACATACATA 100 48
         def 3995332 .. 3995364 + -19.4  -3.33969   CTAGAGCGATAATAA      TAAAGAGGCGGAAG TTAAT CTTCCGCCTCTTTA      TTATGAAATGGGTTC 100 29
 CT43_CH3982 NONE
 CT43_CH3983 3998596 .. 3998630 + -10.9  -4.79373   TTATGGAAATATAAG     AAAAAGGACAATGCT ATGAA GGCATTGTCCTTTTC     TTTTCTCTTATCTTA 100 27
 CT43_CH3994 4006134 .. 4006165 + -17.6  -3.34029   CAACTACTCAATATA      GAATAGGAATAGGT AAAT ACCTATTCCTATTC       TTATCCCGCTATTTG 100 20
 CT43_CH3998 NONE
 CT43_CH3999 4010669 .. 4010701 + -10.2  -5.71638   TATGAGTAGAAAAAA     GTAAAAACCTCTTAT GTCC ATAAGAGG-TTTTAC      TTTTTTTCATTATTC 100 144
 CT43_CH4002 4015100 .. 4015136 + -18.3  -5.57729   ACTTATACAAAAAAA    TAAAACAGTTTGGCCAA GTC TAGGCCAAACTGTTTTA    TTTTTTCTCTTCTTT 100 23
 CT43_CH4006 4019958 .. 4019989 + -14.6  -4.05389   AATATAAAAAAGAAG      CGGCATATCCCTTT ATGA AAAAGGATATGCCG       TTTATAATATGTATA 100 39
 CT43_CH4007 4020583 .. 4020636 + -16.6  -4.95758   GAAGTTGCTATAGAT GA-AAATTGAGCTATGAAAGAAG ACATCCCTA CTTCTTTCATAGCTCAATTTCTC TTTTTATACTGTAAT 100 17
        metE 4023398 .. 4023425 + -12.9  -5.72254   AACGCATAACAAAAA        TGGGTTATCCT TTTCTC AGGATAACCCA         TTTTTTATTCTTTAC 100 32
 CT43_CH4011 NONE
 CT43_CH4012 4025283 .. 4025301 +  -4.6  -4.85618   AATATAAAATAAAAA             GTTACC TTCCATC GGTAAC             TTTTATTCCTTATTT  70 43
 CT43_CH4014 NONE
 CT43_CH4015 4027093 .. 4027107 +  -7.8   -5.9362   TACGGATATTAAAAA               GTCGCT TAT AGCGGC               TTTTTTTCTCTTTTC 100 29
 CT43_CH4016 4028364 .. 4028384 + -12.7  -5.28778   TTTCTAATGAAAAAA            GCTAAGAGT TAA ACTCTTAGC            TTTTTTATGCATAAT 100 14
 CT43_CH4021 4035256 .. 4035280 + -15.9  -5.38549   TGGTAACCCAAAAAA          TCCTTATGCCA AGG TGGCATAAGGA          TTTTTCTTATTTCAA 100 35
 CT43_CH4023 4038361 .. 4038383 +  -6.9  -4.59414   TAACATACAAAAAAA           CCGTCCACA TATAT TGAGGGCGG           TTTTCATTATTATAC  79 58
 CT43_CH4025 4040288 .. 4040316 +  -6.8  -5.14645   AAAGAAATAAAAAAA        CAGTCAGCAT AATATTTGA GTGCTGACTG        TTTTTCTTACATTAT  88 14
 CT43_CH4028 4042822 .. 4042841 + -12.2  -5.33785   TGAGTCATAAAAAAA            GAAGCAGC AATA GCTGCTTC             TTTTTTATAGTGCTT 100 31
 CT43_CH4032 4045800 .. 4045819 +  -6.5  -3.54638   CTACAAAGAAAAAAA            CAGTAAC CCTCAT GTTACTG             TTTAAAACAACTTGT  62 20
 CT43_CH4036 4048951 .. 4049009 + -25.9  -2.53273   TCGATGGTGGCTATA CTGCGCAATAAAAAATAAAGTTTGCTC AAGAA GAGCAAACTTTATTTTTTATTGCGAGG ATCTTCGTACTTTAG 100 15
 CT43_CH4041 4054008 .. 4054026 +    -6  -5.96894   TGGTTGTAAAAAAAA             CCTCTC CTTAGCT GAGAGG             TTTTTTTATTTAACT 100 213
        mtnW NONE
        mtnX NONE
        mtnB NONE
 CT43_CH4045 4057161 .. 4057192 + -13.2  -5.68438   ACATCCTCCTATGGA      ACAGGCTTATTTCA CTTT TGAAATAAGCCTGA       TTTTTTATTTACTCA 100 105
 CT43_CH4046 4057654 .. 4057687 + -17.1  -4.77567   CTTATAATGACTAAA     TAAATAAAAGTCCTC AAAT GAGGACTTTTATTTA      TTTTCTTCTAGAAAT 100 34
 CT43_CH4051 4062374 .. 4062396 +  -8.5  -5.99154   CAAAATAATAAAAAA           CGAAGGTAA CTACA TTGCCTTCG           TTTTTTTATTTCCTG 100 33
 CT43_CH4053 4063439 .. 4063466 +  -7.8  -5.87996   TTCTCATAGAAAAAA        CCTGAGACCGATT TCA AATCGA-CTCAGG        TTTTTTTATTGGTTA 100 83
 CT43_CH4059 4069794 .. 4069824 + -12.1   -5.5454   TGCTCATAATAAAAA      TACGACTCATTCCT TATA AGGA-TGAGTCGTA       TTTTTATTTCTTTAC 100 7
 CT43_CH4066 4076017 .. 4076044 +    -5  -3.57119   ATTACAAAAAAGAAA        GCAGAGATAA-TA AAC TACTTATCCCTGC        TTTCACGAATGTATA  58 16
 CT43_CH4069 4078370 .. 4078392 + -13.4    -5.252   TATTCAAGTAAAAAA           GAAGCCCGCC AGT GACGGGCTTC           TTTTTTATACAAGTA 100 30
 CT43_CH4084 NONE
 CT43_CH4085 NONE
 CT43_CH4086 NONE
 CT43_CH4087 4092596 .. 4092634 + -21.4   -3.6336   TAAATTTTCTTGGCG   TGTGAAATAACCTCCTCT TAA AGAGGAGGTTATTTTACA   TTCTCTCTCCTATCC 100 16
 CT43_CH4090 NONE
 CT43_CH4091 4095938 .. 4095987 + -16.2  -3.44801   TGTATTACATGCTAT TGG-TTAAG-AAAAAACACCGGGG AAAT CCTCGGTGTTTTTTACTTAAACCA TCCTTTTTTATAAAA 100 19
 CT43_CH4101 NONE
 CT43_CH4102 4104692 .. 4104718 + -13.8  -5.01535   GCAAAAATCAATTAA         AAAACACTCGCC TTT GGCGAGTGTTTA         TTTTTGTAGTTGTAA 100 26
 CT43_CH4104 NONE
        lolS 4106499 .. 4106525 +    -8  -5.26918   ACCGATAAAACAGAA         GACTGCCTCC AGTATTA GGAGACAGTC         TTTTTTATAACGTAT  93 53
 CT43_CH4109 4110219 .. 4110250 +  -3.8  -5.98781   TATACATCATAAAAA      GGATACT-CGTTCTT CCA ATGAACATAGTATCC      TTTTTTTTAGTTATC  90 113
 CT43_CH4111 4111906 .. 4111946 +  -2.9  -3.02511   TATAATAATATGTCG CAAGTATGTAT-AAACAT AGCAAA ATGTTTCATATTTACTTG  TCTTAACAGAATAAA  45 78
 CT43_CH4112 4113302 .. 4113332 +  -6.9  -5.67529   GCCGCAATTACATTA       TAAAAAGGTGCGT ATAAA ACGCACCTTTTAC       TTTTTATTTTTCCTT 100 23
 CT43_CH4114 4115766 .. 4115783 +  -9.9  -5.80364   GAAAGAAACAAAAAA             CAGGCTT GCAT AAGCCTG              TTTTTTTATTGCGCT 100 13
 CT43_CH4116 4116542 .. 4116563 +  -8.8  -5.93252   TAATTTTACATGTGA           CATGCACA TTTTTT TGTGCATG            TTTTTTCTTTTTAGC 100 38
        ribD NONE
        ribE NONE
       ribBA NONE
        ribH 4120598 .. 4120611 +  -8.1  -5.75538   ATGGACATAAAAAAA               GAGGC TGCG GCCTC                TTTTTATTTTTTCAC 100 31
       nhaC3 4129408 .. 4129428 +  -9.8  -5.24799   ATAATATAACAAAAA            GGATTACC AAATC GGTAATCC            TTTTTATATTTCTCG 100 37
 CT43_CH4131 NONE
 CT43_CH4132 4133452 .. 4133481 + -16.7   -2.8076   TTGAAAACAAACGTA       TAAAGCTGCTTCT AAAT AGAAGCAGCTTTA        TGATTCGTAATAATT 100 23
 CT43_CH4147 4145081 .. 4145108 + -15.8  -5.30155   GAAAACAATAAAAAA        TAGGAGATTTCC ATAT GGAAATCTCCTA         TTTTTTACTTAATGA 100 30
       proC3 4147875 .. 4147898 + -11.8  -5.04175   GAAAAATAAAAAAAA          GGAGCTCAAG TTTA TTTGAGCTCC           TTTTTCTATAATTAC 100 32
 CT43_CH4155 4151515 .. 4151544 + -15.3  -4.17537   TCTCGTAATCTATAA       TAAAAAAGCACTG GTTA CAGTGCTTTTTTA        TTTATACTTATTTAG 100 33
        mgtA 4155464 .. 4155484 +    -9  -3.29144   TTGTAAAAATAAGAA            TGAGTGGG TATTC CCCGCTCA            TTCTAAAAGACATAA  77 35
 CT43_CH4158 4156382 .. 4156399 +  -3.4  -5.48825   ATTAATTTGATCAAT             G-ACCGC AAGTA GCGGTTC             TTTTTTTGCATCCTC  79 178
 CT43_CH4181 4179023 .. 4179045 +  -9.9   -5.7946   TTATAAATAAAAAAA           TGAGACCGT TACAC GCGGTCTCA           TTTTTTTATTGGCAA 100 55
 CT43_CH4183 4179973 .. 4179989 +  -6.5  -5.08601   ACGAAGAGTAATACA              GTCCTGT TTT GCAGGGC              TTTTTATTGCCCTCC  82 30
 CT43_CH4209 NONE
 CT43_CH4210 4202887 .. 4202920 + -15.5  -2.62184   CCCTATTTCCTATAA     AAAAAGCACTCGTGA ATTA TCACGAGTGCTTTTC      TACTATGCACGAGAA 100 26
 CT43_CH4215 4206727 .. 4206739 +  -3.3  -3.82031   TAATTATTTAAAAAT                GGTGT TCA ACTCC                TTTCCTCATCGTTAA  54 38
 CT43_CH4216 4207170 .. 4207214 + -13.1  -2.90992   AAGGCAAAAAAAGTA AAAAGAAAGACCGTGCTTCCT TTT AGGAAATACGGTCTTTTTTTA TACTTTGAAGCACTT 100 0
 CT43_CH4220 NONE
 CT43_CH4221 4210811 .. 4210821 +  -5.4  -5.95946   GTGAGCAATTATTTT                 TCGT TAT ACGA                 TTTTTTTATTATTAC  95 177
 CT43_CH4222 4211703 .. 4211728 + -12.7  -5.37345   TTTACTATAAAAAAA         TAAGAGGTGGC AATT GCCATCTCTTA          TTTTTTATAATTCCA 100 31
 CT43_CH4224 4213131 .. 4213151 +  -9.8  -5.40004   ATAACATACAAAAAA            CTAGCTGA ATAAA TCAGCTAG            TTTTTTCATTTCATC 100 40
 CT43_CH4226 4214990 .. 4215009 + -10.8  -4.66953   GAGACTGTCTAAAAA            GAGCGTTA CCTA TAACGCTC             TTTTTCAGCTCTTCA 100 29
 CT43_CH4227 4215662 .. 4215689 +  -6.3  -4.60924   CGCGGACTTTCAAAC        TGACGGATTGC TCCTTT GCAATGCGTCG         TTTTTAAGCCCTTTA  76 23
       sugE1 NONE
       sugE2 NONE
 CT43_CH4230 4216633 .. 4216663 +  -4.7  -5.50925   TAAGTTATTTAAAAA       GGACAGTACTTCT GAAAA AGAGTAACTGTCC       TTTTTTGTATTCATT  82 1
 CT43_CH4231 4217086 .. 4217105 + -12.2   -4.2361   GTCGTTATTGAAGAA            GGTGCCTT TTTT AAGGCACC             TTTTAAAATTCTCTT 100 30
 CT43_CH4242 NONE
 CT43_CH4243 4227948 .. 4227976 + -12.5  -4.23434   ATTTTCTATCTTGAA        GAAGCTCCTTCTG CTT TAGAAGGAGCCTC        TTTTGAGCTATTTTC 100 27
 CT43_CH4246 4229422 .. 4229453 + -17.5  -4.72007   CGTGCAGTAAACAAA      GATCCCCTAGTGT ATTACG ACACTAGGGGATC       TTTATTTTGCTAGAC 100 31
 CT43_CH4257 4236009 .. 4236024 +  -7.6  -4.11141   TATCATATAAAAGAA              GCCAAT AATA ATTGGC               TCTTTTTATATGAAC  77 43
 CT43_CH4258 4236361 .. 4236377 + -10.9  -5.86061   GGCTGGACATTAAAA              GATGGCA TTT TGCCATC              TTTTTTTTAATCCCG 100 28
 CT43_CH4259 4237870 .. 4237895 +   -12   -5.5074   TCATAATGAAAAAAA         GACGCTAACA TACAAT TGTTAGCGTC          TTTTTTATTCCGTTC 100 35
 CT43_CH4263 4239206 .. 4239226 + -12.7  -5.35354   TATTATGTAAAAAAA            GAACGTGAT TGA ATCACGTTC            TTTTTTCATTATATG 100 31
        metI NONE
 CT43_CH4273 4251821 .. 4251850 + -11.7  -4.89393   TGCATAGGGAAAAAA       GAAGATATGAGAA TAGG TTTTCATATCTTC        TTTTTATGCGATTTA 100 34
 CT43_CH4274 4252561 .. 4252582 +  -6.7  -5.09259   CATTATCACCATAAA           GAAGC-GAAT TAC ATTCAGCTTC           TTTTCTTTTAACCTG  85 97
 CT43_CH4275 4253326 .. 4253351 + -14.9  -5.55695   AGTCGTATTAAAAAA         CAAGACACAGT ATAT ACTGTGTCTTG          TTTTTTATATTGTTA 100 138
 CT43_CH4278 4255488 .. 4255519 + -14.6   -2.6162   ATCGAGATTTCACAC      AAAAAGAGGAAGGG TTCC CCCTTCCTCTTTTC       ATATTTCAAAACTTA 100 62
 CT43_CH4292 4270038 .. 4270054 +  -5.1  -3.22091   TGTAAATATAATATA              TCTTGAG ATT CTCTAGA              TTCCTACGTTACAAT  54 70
 CT43_CH4293 4270865 .. 4270878 +  -6.7  -6.34424   AGAAAAATAAAAAAA               TGCCT AAAT AGGCA                TTTTTTTTTTGGACA 100 31
 CT43_CH4294 4271349 .. 4271361 +  -5.5  -4.04474   ATAGTAAAAGTGAAA                CCGAG CAC TTCGG                TTTCTATAGCCCTAT  64 84
        ispG 4272562 .. 4272593 + -15.4  -4.42386   CAAGAACAATAAAAA      GAAGGTTGC-CACAA TAT TTGTGAGCAACCTTC      TTTTCTACGTAAAAA 100 29
 CT43_CH4300 4276131 .. 4276148 + -12.7  -3.71321   CAATTACTAAAATAA             GGAGGGG AAAT CCCCTCC              TTATTGCGCTTTAAT 100 26
 CT43_CH4303 NONE
        ispH 4280489 .. 4280522 + -12.7  -5.18726   AAAAAAGAACAATAA     TAAAAACCGTTGC CTATATGA GCAACGGTTTTTA      TTTTTCTTATACAAA 100 26
 CT43_CH4324 4298120 .. 4298140 +  -9.8  -5.67967   AGAACAATAAAAAAA            CGTCTCAT ACGAA ATGAGACG            TTTTTTTATGCTAAT 100 134
        rpsT 4312980 .. 4312995 +    -9  -5.71712   AAGGCGTTTAAAAAA              CGATCC ATTT GGATCG               TTTTTTTATATACAA 100 39
 CT43_CH4341 4314544 .. 4314564 +    -9  -4.08349   TTATCGGTTCTTAAA            GGCTGCCA CTTCA TGGCAGTC            TTCTCTTTTTCACCT  85 27
 CT43_CH4345 4319173 .. 4319209 + -18.4  -4.79683   AATACATCTTCTTTA    TAAAACAAAAGCAACC TTCTC GGTTGCTTTTGTTTTA    TTTGTTTTATCCGTT 100 163
 CT43_CH4354 4324869 .. 4324882 +  -3.8  -3.84961   CGAATAAACAAGTAC               TCCC ATCTAG GGGA                TTTCATCATTAAGTA  56 140
 CT43_CH4357 4327815 .. 4327840 +  -7.8  -5.04222   TTATAAAAATAAAAA         GAGTTATTTT CTTTGA AAAATAACTC          TTTTTACTTTACTTA  89 35
 CT43_CH4361 4331360 .. 4331379 +  -8.6  -5.28826   ACCACTATAAAAAAA            GGTTCTCG CCAA TGAGAACC             TTTTTTGTACCATTT  95 31
 CT43_CH4364 NONE
 CT43_CH4365 4335343 .. 4335367 + -17.3  -4.43213   GAAAAATAACATAAA          CGGGTATCTCA TTT TGAGATACCCG          TTTTCATATATTAAG 100 32
 CT43_CH4369 NONE
 CT43_CH4370 4337995 .. 4338019 + -11.6  -5.70522   AATAACAGTAAAAAA          CTGCCTAAAA CGATC TTTTAGGCAG          TTTTTTATTCTTCTT 100 36
         vpR 4342509 .. 4342520 +  -4.4  -2.78216   ACTTATATCACTGTC                TCAG AGAA CTGA                 TGGTTGGTGCGAATC  48 290
 CT43_CH4373 4342685 .. 4342711 + -19.6  -5.09895   ACCGCGATTTTTATC         GTCCCTATCGGA TTT TCCGATAGGGAC         TTTTTTGCGTCCATC 100 47
 CT43_CH4374 NONE
 CT43_CH4375 4345182 .. 4345215 + -19.9  -4.14739   GCAATTATAAGAAAA     TAAAAGGAGAAGCCT TTTT AGGCTTCTCCTTTTA      TTTTGAAATGGATAC 100 23
 CT43_CH4378 4347199 .. 4347219 + -14.1  -5.27923   AATAACAAAAAAAAA            GAAGCCTGT TAA ACAGGCTTC            TTTTTTATCCCCTTA 100 40
 CT43_CH4386 4352849 .. 4352867 + -11.7  -5.22794   TTTCCAACAAAAAAA             GAGCCGC TTTCT GCGGCTC             TTTTTTAATCATTAT 100 354
 CT43_CH4393 4359582 .. 4359633 + -19.2  -3.54741   AAATTAAAGAAATTG CGTT-AACTAAAAAAGAGAAGCTCC TAA GGAGCTTCTCTTTTTTAGTTTAGAG TTTGAACAAGTACTG 100 20
 CT43_CH4406 4372586 .. 4372610 + -11.5  -3.59946   ATAAATATATGATTA          GCCCTCTATTT CTT ACATAGAGGGC          TTCTATACTTACACA  93 37
 CT43_CH4408 4374081 .. 4374100 +  -8.6  -4.84529   GAGTGCATAAAAAAA            CTCCCTTG TCTA TAAGGGAG             TTTTTCACTTTATCG  93 31
 CT43_CH4416 4382109 .. 4382125 +  -4.3  -3.23274   AACATAAACGAAAAC              GTCACCA TTA TGGAGGC              TTCGCTTATGAAAAC  52 39
 CT43_CH4417 4382778 .. 4382813 +   -15  -4.64861   GCAGAGAATTAAAAA    CAAGGATGTCACTT TTTTGACT AAGTGACATCCTTG     TTTGTTTTCGGAAAA 100 29
       spoVB 4399591 .. 4399618 + -13.6  -3.34013   AATAAGATGAAACTT        TAATCAGTGGGG TAAT CTCCACTGATTA         TTAGTTAAACCAATC 100 36
 CT43_CH4431 4401157 .. 4401167 +  -5.4  -3.02144   TATTAAAGCCATACT                 GTTC AAA GAAC                 TCTTCGCGGAAATCG  53 388
 CT43_CH4438 4406296 .. 4406330 + -13.8  -4.19746   TAGCTAAAAATAAGT     AAGAAAAAGCAGCTCA CCA TGAGCTGCTTTTTTTC     TTATTTTGCACTGCG 100 24
 CT43_CH4440 4407682 .. 4407703 + -14.5  -5.16132   ACAACGATGAATAAA           GAGGAAGGG CTAC CCCTTCCTC            TTTTGTTTTGCTATC 100 27
 CT43_CH4446 NONE
 CT43_CH4447 4416003 .. 4416029 +  -5.2  -5.20216   GTTTATTAATGTAAA         GCACAGAG TTTTTATCATT CTCTGTGC         TTTTTTAATGCTATA  80 32
 CT43_CH4448 4416783 .. 4416803 + -11.2  -4.77079   TAGCGGGATAAAGAA            TCCCACCT TTTGC AGGTGGGA            TTTTATTAATCTATC 100 85
 CT43_CH4481 NONE
 CT43_CH4482 4451698 .. 4451717 +  -9.2  -5.98675   ATATAAAGAAAAAAA            CGCGCGAC ATTC GTCACGCG             TTTTTTGTTTTTGTC 100 47
 CT43_CH4489 4461416 .. 4461431 +    -4  -2.73635   GATTGAAAAACACCT              CATATC GCTT GATGTG               CTTTCACGGAATTTC  46 102
 CT43_CH4490 4462301 .. 4462324 + -12.6  -4.63218   AAAATACACAAAAAA          CCTTGTTATC AAAA GATAACAAGG           TTTTCTTAGCACCCC 100 44
 CT43_CH4493 4464465 .. 4464488 + -12.6  -5.44119   TAGACAAACAAAAAA          CCTTGTTATC AAAA GATAACAAGG           TTTTTTTAGCGTCCC 100 158
 CT43_CH4502 4470251 .. 4470270 +  -6.6  -3.15548   ACGAATGAGATTATA            TATATAAC GAGA GTTATATA             TCTGTCTTACTTCGT  62 103
 CT43_CH4503 4472111 .. 4472131 +  -2.5  -4.22377   GTGACCAGCAAGAAG            CATCGGC AGAATAG GTCGGTG            TCTTTTTATTATGCG  55 12
 CT43_CH4517 4486727 .. 4486756 +  -8.6  -5.02074   TATGTACTAAAAAAA       GCAGATTCCCCT CTATTA AGGGAGATCTGC        TTTTTTACGAAATCA  95 42
 CT43_CH4523 4491828 .. 4491853 + -14.9  -5.14563   ATAGTGTATACAAAA         TCCCCTATAGA TTTT TCTATAGGGGA          TTTTTTCATGAAGAA 100 65
 CT43_CH4525 4493503 .. 4493533 + -10.7  -5.55769   ATCAGCATAAAAAAA      GAGTATGGTTCTAT AGAG AT-GAACCATACTC       TTTTTTATTGTCCCC 100 31
 CT43_CH4526 4494335 .. 4494361 +  -8.1  -5.72254   TATGAATAAAAAAAA        GCGAGC--CCTCA TTA TGAGGAAGCTCGC        TTTTTTATTCTTTCA 100 54
 CT43_CH4530 4498192 .. 4498234 + -18.9   -4.2074   TTAAAATCATTTGAA GTAAAATAAAAGAGGATGGC ATTC GCCATCCTCTTT-ATTTTAC TTTCTCTGTTAAAGG 100 17
 CT43_CH4533 4500842 .. 4500864 + -13.6  -5.31519   ATGGAAGACAAAAAA           TAAGAGAGCA AAT TGCTCTCTTA           TTTTTCTTTCACTCT 100 23
 CT43_CH4538 4505367 .. 4505394 +  -9.3  -5.63645   TAAGCATTACCTACA        GTCAACTAGAC ATATCA GTTTAGTTGAC         TTTTTTGTATTTTCA 100 38
 CT43_CH4547 4515695 .. 4515719 + -12.2  -5.12172   AGTCTTGTATTCGGA          GGAGGAGCAG CTCTC TTGCTCCTCC          TTTTCTTTATTCATA 100 78
 CT43_CH4548 4517690 .. 4517713 + -12.5  -5.00895   AAAGTTAATTAAAAA          GGAGGCTTC GTTTTA GAAGCCTCC           TTTTTATATACTAAA 100 29
 CT43_CH4550 4519452 .. 4519475 +    -9  -5.00642   TGTAACGACAAAAAA          GACAAGATGT TTAC ATATCTTGTC           TTTTTCTGTAACTTG  95 36
 CT43_CH4551 4519936 .. 4519956 + -14.1  -4.67556   TACATATACAAAAAA            GAGTTGGTG TAA CACCAACTC            TTTTTCACATATTCT 100 51
 CT43_CH4559 NONE
 CT43_CH4560 4525722 .. 4525745 +   -11  -5.47159   GTCCAATAAGAAAAA          GGAGCTCAAG TAAA CTCGAGCTCC           TTTTTCTTTATTAAC 100 32
        isdG 4527592 .. 4527633 + -19.1  -5.69793   TATTTCTTTTTTAAA GTATAGAATATGAGAAGCG TTAC CACTTCTCATATTCTATAC  TTTTTTATTTACTGT 100 44
         rnh 4544257 .. 4544276 +    -5  -5.63517   TAGTATCGACAAAAA            CAGGAG CCTACAAA CTCCTG             TTTTTTGTTTCACCC  85 38
        sspI 4551891 .. 4551914 +  -9.6  -5.40072   TAAGCAATTTGAAAA          TCACCTTTGC ATAA GCTAAGGTGA           TTTTTTTACGAAAAA 100 38
 CT43_CH4583 4552616 .. 4552641 +  -8.3  -5.12916   GTTATCAATGAGAAA         GAGGCATCACT ACAG GGTGATACCTC          TTTTATTATTTTATG  93 30
 CT43_CH4584 4553609 .. 4553648 + -10.3  -4.48741   CATGTTGGCATTCTT  GAGTTAAAAAGAGGTATC ATCGC GATACCTCTCTTT-ACTC  TTTTATCATAACTTC  95 19
 CT43_CH4585 4554581 .. 4554601 + -11.2  -4.85894   TAAAAAGGCAAAAAA            GCAGGGAA ATTAA TTCCCTGC            TTTTCTATTTGGTTT 100 432
 CT43_CH4589 4557975 .. 4558010 + -15.8   -3.3941   GGCCTTTTTAAAACA    TA-AAAAAGCGAAGGAG AAT CTCCTTCGCTTTTTCTA    TTAATTAAATGTAAT 100 30
 CT43_CH4610 4578605 .. 4578653 + -14.2  -4.55826   GAAGGATTTTTCAAC TAAAAATAGCGCTAGCAT-CCTT ATTC AAGGTATGCTAGCGCTATTCATA TTTTCATCTTTTAAA 100 23
        ytvI 4585327 .. 4585361 +   -13  -4.37991   CATACAAAAAATCAA     GCTATAATCAGTGGGA AAT TCCCACTGATTATTCC     TTTTACCTATTTTTC 100 53
 CT43_CH4625 NONE
 CT43_CH4626 4597700 .. 4597726 +  -8.8  -4.49389   AAAAGGAAAAATAAA        GAAGGAG-GGC TTTAGC GCCGCTCCTTC         TTTTCGTTCTAACAT  88 27
 CT43_CH4628 4599143 .. 4599178 + -16.5   -2.6999   AAGTCTATGAAACAA    CGTAAAAAAGCATCA AAATTG TGATGCTTTTTTACG     TCCTCTAACTTTTAA 100 21
 CT43_CH4632 4601351 .. 4601378 +  -4.2  -4.84146   CTACACACGTAAAAA        CCCTTCACTT TTCTTTTC AAATGAAGGG         TTTCTTTTCTATAGT  68 29
       pepQ2 4603324 .. 4603341 +  -9.1  -5.85737   GTAAAATAATAAAAA             GGCAGCG TGAA TGCTGCC              TTTTTTTATTCCTCT 100 32
 CT43_CH4637 4605076 .. 4605099 +  -6.1  -3.84587   AATATTATTAAAAAA          GAAGGCCACT CAAAA AGT-GCCTTC          TTCTATTTCACTAAT  66 30
 CT43_CH4646 4611192 .. 4611215 +  -8.9   -5.1417   AATTTATAGATAAAA          CACCAAGTC CACATA GGCTTGGTG           TTTTTCATTTTATCA  95 39
 CT43_CH4648 4612193 .. 4612228 + -14.8  -4.78326   TAAGTATAATTAAAA    GAAAACGACTGCAGGC GAAT GCCATCAGTCGTTTTC     TTTCTTTATTTAAGC 100 28
 CT43_CH4652 4615915 .. 4615925 +    -4    -5.626   AGCAACAAGCTCTTC                 TTCA TAT TGAA                 TTTTTTTCTGACATG  85 180
 CT43_CH4654 4616275 .. 4616310 +  -2.3  -3.12847   AATAACTTAGGCTTT   TCTACAAAAATAT-TTA AACA TAACAT-TTTTTGTAGA    TTCCCTCCGTTTATT  42 95
 CT43_CH4655 4617503 .. 4617524 + -10.1  -6.00086   CAACAAATTAAAAAA           GCGAAAGGC TTCG GCCTCTCGC            TTTTTTTTATGCTCT 100 30
 CT43_CH4657 NONE
 CT43_CH4658 4619628 .. 4619651 +  -9.6  -4.76191   ATCCAAAAGAAAAAA          GACGAAATCC TATA GGATCTCGTC           TTTCTTTTCATATAT 100 11
        ppnK 4625044 .. 4625081 + -23.1  -4.41616   TTTATAGGATTAAAA   TAACCGCAGAATTATGG AATT CCATAATTCTGCGGTTA    TTTATTTACCCCGAT 100 34
 CT43_CH4673 4635846 .. 4635872 + -10.9  -3.66844   AAGTAAACATAAAAA         TCCCCACCTCA GTTCG TTAGGTGGGGA         TTCTTCACATATGAA  89 6
 CT43_CH4675 4637151 .. 4637199 + -13.3  -5.87996   TATGTAAAAAGAAAA GAGCGAGTTATCGATTTAGTACG TCC TGTACAAAACCGATAGCTCACTC TTTTTTTATTGATTA 100 34
        rpsD 4639393 .. 4639411 + -13.2  -5.15969   CGTTAATGACAAAAA             GCCAATCC TGT GGATTGGC             TTTTTTCAATTCCCC 100 35
 CT43_CH4678 4640781 .. 4640812 +   -14  -4.13246   TTTCCAACAACCTGA      C-AAAAAGCCAATCC AAT GGATTGGCTTTTTCG      TTTATATATAAAATA 100 62
        acuA NONE
        acuB NONE
        acuC 4648992 .. 4649016 +  -5.8  -5.14682   TGTACTAAACGAAAA         GGAGGCTCGTT TTTG AAT-AGCCTCC          TTTTATTTATTGTCG  83 33
 CT43_CH4689 4650038 .. 4650064 +  -5.1  -5.00616   ATTTTCGAACAAAAA         GCTCACAGCCT CTATA AGACTATGAGC         TTTTTTCAAAAGAAA  75 61
 CT43_CH4693 NONE
 CT43_CH4694 NONE
        mscL 4655003 .. 4655034 + -14.6  -2.97925   CATAATTGAACGGAT      AAAAAGGCATGTCC CTCG GGACATGCCTTTTC       TATATGCTATAACGT 100 36
 CT43_CH4697 NONE
 CT43_CH4698 4656370 .. 4656391 + -14.5  -5.38249   TGAATATGAATAAAA           GCTCACAGC AATC GCTGTGAGC            TTTTTTATACTTACT 100 28
 CT43_CH4704 4662294 .. 4662315 + -11.6  -5.58179   TTAAAATAATAAAAA           CGCTCGGA ATTATA TCCGAGCG            TTTTTTATTATCCTC 100 32
 CT43_CH4720 4678150 .. 4678173 +    -3  -4.80853   TAGCAGCATAAAACG          GAGGGTTCCC ATTA GGTGAACCTC           TTATTTTTTTGAAAT  65 30
 CT43_CH4727 4686405 .. 4686429 + -15.9    -5.252   GTAAATAAATACATA          CCCCTTTCTAA CTA TTAGAAAGGGG          TTTTTTCTGCACCTA 100 57
 CT43_CH4730 4690447 .. 4690466 + -10.8  -5.63374   GCAATATTAAAAAAA            GAAACAGG GATT CCTGTTTC             TTTTTTTAATATTGC 100 31
 CT43_CH4731 4692121 .. 4692159 + -17.8  -3.44325   CAAACAAGTGAGCAA   CAATAAAAAGGATGACCA TTT TGGTCATCCTTTTTATTC   TTCATTCTCCACAAT 100 20
 CT43_CH4734 4693561 .. 4693597 + -19.8  -4.37886   TGTCCCAACATAAAA    CATAAAAAAGAGCTGG GTGAG CCAGCTCTTTTTTATG    TTTTATAAACGATCA 100 28
 CT43_CH4737 4694797 .. 4694832 + -13.5  -3.01712   TATTTTTTTTGTAAA    AAAAAGGACGAAGAG TTTTAT CTCTTCGTCCTTTTA     TATTACCCACGCCCA 100 60
        moaC 4700125 .. 4700162 + -12.9  -3.11786   ATTCATAATCCTCTC   TCCGTTGAACCTAAAGG ATTC CCTTTAGGTTCAACCTA    TATATCTTGCATATA 100 33
 CT43_CH4752 4706684 .. 4706694 +  -2.6  -2.95339   CGCATACTTCCCTTG                 TTTT TGT AAAA                 TATCTACCATTTTAT  43 204
 CT43_CH4754 NONE
       gerHB NONE
       gerHC 4711931 .. 4711965 +  -8.7  -5.88565   TGAGAAATGATTGAA    CTCCTCTCTCCAGCATG ATA CAA-C-GGAGAGAGGAG    TTTTTTTATTATCAA 100 38
 CT43_CH4757 4712203 .. 4712228 + -12.1  -4.59376   AGAAGAATAACGAGC         GAACATCTTAT TTCG ATAAGATGTTC          TTTTCATTTCATAAT 100 31
 CT43_CH4758 4712711 .. 4712730 + -12.2  -5.62045   AGAAGCTGAAAAAAA            CTGCTAGG ATTT CCTAGCAG             TTTTTTATTATGTCT 100 19
 CT43_CH4772 NONE
 CT43_CH4773 4729051 .. 4729071 + -11.2  -5.89921   AACATAACAAAAAAA            GACGTGCA TTCAC TGCACGTC            TTTTTTTATTCTCCT 100 162
 CT43_CH4774 NONE
 CT43_CH4775 NONE
 CT43_CH4776 NONE
 CT43_CH4777 4732817 .. 4732863 + -13.6  -3.19323   TTAAAAATACGATCA TAAATAAAAA-GCATTTGTAC CATCGT GTACAAATGCTTTTTTATTTA CTATTTTCTTTTTTT 100 23
 CT43_CH4781 4735634 .. 4735653 +  -9.3  -5.71712   AAAAATGATTTTACT            GCTGCCA TAATAC TGGCAGC             TTTTTTTATATAAAA 100 33
 CT43_CH4782 NONE
 CT43_CH4783 4737469 .. 4737491 +  -9.2   -4.1673   GCTTGAACAGAAAAA           CTCCCTTC AAAAAAC GAAGGGAG           TTTATTACACACTTG  88 35
 CT43_CH4786 4739424 .. 4739446 + -13.5  -5.62219   AACGAAATAAAAAAA           GCTTTGCGC TCACC GCGCAAAGC           TTTTTTTCATATATT 100 186
        pckA 4742890 .. 4742915 + -14.9  -4.22949   CACTTACATAAAAAA         GAAGCTTACGT GAAA ACGTAAGCTTC          TTTCTATATCTTATA 100 150
 CT43_CH4790 NONE
 CT43_CH4791 4744007 .. 4744040 + -16.3  -4.36931   CCAAAAATAAAAAAA     TAGGAAAGCAGATCA TAGG TGATCTGTTTTCCTA      TTTTGATATAGGTTC 100 23
 CT43_CH4794 4746894 .. 4746924 + -13.4  -3.04144   CGAAAAATGAACCTA       CTGGTAGCACCG ACTTTAC TGGTGCTACCAG       TATTACAGCTGGAAA 100 139
 CT43_CH4802 NONE
 CT43_CH4803 4759119 .. 4759142 + -11.2  -5.59962   AATACTATGAAAAAA          GAACTTGTAT CGTT ATACAAGTTC           TTTTTGTTTCTTTTA 100 200
 CT43_CH4805 4762772 .. 4762805 + -22.7  -3.61894   AACCAAGCATAATAA     GAAAGAGGTCGTCCA CCGT TGGACGACCTCTTTC      TTATTCCCCACACTT 100 29
 CT43_CH4808 NONE
 CT43_CH4809 NONE
 CT43_CH4810 4766296 .. 4766306 +    -4  -3.64703   CACACATTTTCGTTT                 CATT TGT AATG                 TTTCCATCCGCAACC  54 66
 CT43_CH4813 4768668 .. 4768697 + -10.1  -3.76065   GACAAAAAATAATAA       GAGGAGGCAGTTGT TCA AAAAC-GCCTCCTC       TTCCTTTATTATTCA  86 87
 CT43_CH4817 NONE
 CT43_CH4818 4771317 .. 4771328 +    -3  -4.77867   TTAGTCTTTTTACAC                GAAT TTCT ATTC                 TTTTCTCTTATGTAT  65 438
       cydA2 4776460 .. 4776480 +  -3.9  -2.70143   GATCCTGCTACTGAG            GGAGGCGTG GCC CATGTCTCA            TGATATGCTTGCAAT  46 2
       cydB2 4777511 .. 4777530 + -10.8  -4.34488   CACTAAAGTGAAAAA            GACACTTC GTTT GAAGTGTC             TTTCTTGTACGTATG 100 35
 CT43_CH4827 4779619 .. 4779641 +   -15   -4.4204   ATTTTCTTAATAGCA           TCCCATCCTT TGA AAGGATGGGA           TTTCTTATACTTATT 100 31
 CT43_CH4828 4780687 .. 4780716 + -20.9  -5.30348   AATCGTTATGAAAAA       GAGGGTGTGCCAA CAAT TTGGCACACCCTC        TTTTTATTATTAAGT 100 39
 CT43_CH4837 4787940 .. 4787958 +  -8.8  -5.23316   GAATACACAAAAAAA             GGGCGCTT AAT GAGCGCTC             TTTTTTCATATCGTA  95 16
       hpt_1 4793694 .. 4793725 +  -3.7  -4.53439   CCCAATTAATAGGGA      GAAGCTGTTCTAA AATACA TGGGAACAGCTCC       TTTCTTTCCATTTAC  61 186
 CT43_CH4845 4794742 .. 4794768 +  -9.6  -5.75538   AATTAATAAGTAAAA         GGTTGTTAAC AAAAAAC GTTAACAACC         TTTTTATTTTTTAAA 100 102
 CT43_CH4846 4795110 .. 4795142 + -18.7  -3.66921   CGTAGAACATTGAAA      CAGAAAAGAGATGGT TTT GCCATCTCTTTTCTG      TTTCAAATTACCCTT 100 143
 CT43_CH4854 4804040 .. 4804067 +  -9.9  -4.55849   TGATAAAAAAACAAA        GCTGCTCTTCC CTAAAA GGAAAAGCAGC         TTTATTTACATTTTC  93 38
 CT43_CH4858 NONE
 CT43_CH4859 4807582 .. 4807605 +  -8.3   -5.0538   CATATGCAAGCAAAA          TGTATGAGA ACTCAC TCTCATACA           TTTTTTGCAATACAA  91 47
 CT43_CH4860 4809869 .. 4809895 +  -8.2  -3.79527   ATTCTCTGAACATAT         TAATGACAATTT CAG AAGTTGTCATTG         TGTTCTTTTCATTTT  77 260
 CT43_CH4861 NONE
 CT43_CH4862 NONE
 CT43_CH4863 4814410 .. 4814436 + -18.2  -4.28589   AAAATATGAATAAAA         TAGCCTTGTGCA ATA TGCACAAGGCTA         TTTTCAATAGTTTTT 100 32
 CT43_CH4865 4815499 .. 4815512 +  -2.4   -3.4404   GAGCTCATAAAAATG               GTGA AGAAAC TCAC                TGTTTAAATATGCCT  46 5
 CT43_CH4866 4816252 .. 4816299 + -22.6  -3.71378   AGAAAGCACAAAAAA CGAATAAAACCTACAGAGGAAAT GTA ATTTC-TCTGTAGGTTTTATTCG TTTAAATCTGACCTC 100 42
 CT43_CH4882 4834430 .. 4834449 +  -7.8  -4.84527   ATACTTTCTATAAAA            GGAGCTGC TTAT GTGGCTCC             TTTTTCATATCTGAA  87 28
 CT43_CH4883 4835275 .. 4835295 + -14.1  -4.88067   AAAGAATAAAAAAAA            GCATTCCGA AAA TCGGAATGC            TTTTTATCGCTAGCT 100 32
 CT43_CH4885 4836671 .. 4836703 +  -7.8  -4.57516   AATACTAAAATTAAA     CACCCTTGC-TTGCA GTAA TGCAGTGAAAGGGTG      TTTTAATTTACGTCT  82 78
 CT43_CH4886 4837167 .. 4837195 +  -8.9  -4.07562   GAAAAGAGTAAAAAA        TGCCTCCAATG CAAAAAA CATCGGAGGCA        TTTCTCTAAAGTTTA  85 214
 CT43_CH4888 4839082 .. 4839122 + -17.3   -3.3287   CTTTCTTAAGCAAAA  TAAATAAAACGAGCTTAAT TTT ATTAAGCCCGTTTTATTTA  TTAATATCCATTTTT 100 243
        calY NONE
         vpR NONE
 CT43_CH4896 4852567 .. 4852600 + -19.1  -3.34013   GATAAAGTGAAACTT     TAATCAGTGGGGGGT GTTC ATCCCCCACTGATTA      TTAGTTGAACCAATC 100 39
        sapB 4861882 .. 4861899 +  -5.6   -5.8096   GTAGCATAAAACAAA             CTCTCT TTAATT AGAGAG              TTTTTCTTTTTTCTA  91 37
 CT43_CH4899 4863432 .. 4863468 + -24.1  -4.11371   GACTTTTCGATAAAA    TAATAAAAAGCGACCGG AAT CCGGTCGCTTTTTATTA    TTTTAAACGCTCTTC 100 499
 CT43_CH4902 4865400 .. 4865443 + -20.7  -3.06679   ATATATATCATAAGA TAAAGTAAAAGAGGAACGC TCATAT GCGTTCCTCTTTTACTTTG TTAACTCGGACTCTT 100 99
 CT43_CH4906 4868846 .. 4868870 + -17.3  -5.80364   ACTGAATAAACGAAA          GGCAAGATGAC GTC GTCATCTTGCC          TTTTTTTGTTAACAT 100 42
 CT43_CH4907 4869877 .. 4869899 + -13.4  -2.78715   GGATAATATAAAAAA           GGCCGTCGGA AAT TCCGACAGCC           TATAATGAACAGCTT 100 124
 CT43_CH4909 4871427 .. 4871461 +   -10  -4.14615   TTTCATAATAATAGA     GGAGTCTGTCCCCTAA TCA TTCTTGGACAGACTCC     TTTGTCATATTTTGT  90 33
 CT43_CH4912 4872920 .. 4872950 +   -12   -3.3382   CTTTAAAAAACAAAA       CGACCAAATTACAT AAT GTGCAATTTGGTCG       TTACTGTGTGCTCAC  89 35
 CT43_CH4914 4875198 .. 4875218 + -13.3  -5.35354   TATGTAGTAAAAAGA            GCGCTCTGA TAA TCAGGGCGC            TTTTTTACTTATATC 100 34
 CT43_CH4916 4876783 .. 4876818 + -16.9  -5.86465   GGAACCGCGGGCAAA    CGCTCGTCCCTAGGC AAATAA GCCTTGGGATGAGCG     TTTTTTTATGTTCTT 100 242
        glyS 4878301 .. 4878323 +  -9.9  -5.46698   TAATTATAAGAAAAA          GAGGCTGCTC ATAA GAGC-GCCTC           TTTTTTACTTTTCAC 100 38
 CT43_CH4919 4879569 .. 4879598 +  -2.3  -3.30159   TTTTAGCTACGATAA       TGTTAACCT AAAAACAACAGG AGGTTAACA        TTATGAGAAGATTAC  44 44
 CT43_CH4920 4880202 .. 4880229 + -15.8  -5.80817   TTTCATAATAAAAAA        GAGTTATTGCAG CTTG CTGCAATAACTC         TTTTTTTATATTAAG 100 33
 CT43_CH4923 4883798 .. 4883821 +  -9.6  -5.06414   ACATCAATAAAAAAG          GCTGTCTCCA AAAT TTGAGACAGC           TTTTTCTTCAAAAAA 100 115
 CT43_CH4933 4893485 .. 4893518 +   -17  -4.52589   TTTTAATATATAAAA     TAAAAGCTCCTTCC ATACGC GGAAGGAGCTTTTA      TTTTATATACCACGA 100 35
 CT43_CH4935 4904721 .. 4904737 +    -8  -5.71983   GTTAGCCTAAAAAAA              GATGCC CATTC GGCATC              TTTTTTTGTCGTTAA 100 31
 CT43_CH4936 4906189 .. 4906213 +  -5.7  -5.09895   TCGACTAGCTACTTG          GAGTCATGTAT TAT ACGCATGGCTC          TTTTTTAAATGGGTC  80 33
 CT43_CH4938 4907883 .. 4907913 +  -5.5  -5.63517   TACAAGGGGTATTAA      GCAACGTTTACCAA TAAA TCGGTGA-CGTTGC       TTTTTTGTTTCCAAA  87 286
 CT43_CH4939 4908888 .. 4908898 +  -6.8  -3.04428   AAGAAATGAAGGATA                 GGGA CTT TCCC                 GTTATATTTGTTTTT  62 141
 CT43_CH4944 NONE
 CT43_CH4945 NONE
 CT43_CH4946 NONE
 CT43_CH4947 4912795 .. 4912819 + -11.5  -5.50723   AGAATCACCACATGA          GGCACCTTC AGCTGGG GAAGGTGCC          TTTTTATTTTGATGG 100 139
 CT43_CH4963 4927247 .. 4927286 +  -3.1  -4.80959   AAAATGCCATTTCCA  GTCCTACAAT-TTCCA ACTACCACA TCGAACATTGTAGGAC  TTTTCTTATGAATTC  65 91
 CT43_CH4985 4941851 .. 4941880 +    -5  -6.11229   TGATCTATAAAAAAA       GAACTTGGCAGA TTAACT TCCACCAAGTTC        TTTTTTTATTTTGAT  95 31
 CT43_CH4990 4946121 .. 4946132 +    -3  -5.45726   ACGCGTAGGAATGCT                TCTT TACG AAGA                 TTTTTTTGAGCTGTA  77 224
 CT43_CH4994 4949468 .. 4949480 +  -3.3  -3.31183   AAAGATGATCCACAT                CCGCA TGA TGCGA                TTGCGTTTGGATTGT  48 186
 CT43_CH4998 4952594 .. 4952614 + -11.9  -3.97331   GTTAATACTTTACAG            GCTGTCTAC TAT GTAGGCAGC            TTCTTTGCATCAGTT 100 36
 CT43_CH4999 NONE
 CT43_CH5000 NONE
 CT43_CH5001 4954687 .. 4954725 + -18.5  -3.07947   CGACAAAAAGTGACA   TAATAAAAAGAGGAGGC TATTC GCCTCCTCTTTTTATTG   TCTTACGCCTTCTTA 100 226
 CT43_CH5008 4959232 .. 4959251 + -12.2  -5.80364   AATCGCCTTCTAAAA            GGAGACCA AATT TGGTCTCC             TTTTTTTATTCAAAT 100 190
 CT43_CH5009 4959625 .. 4959660 + -15.1  -4.62069   CATAAAATTGTGGTA    TATAAAAAAGAGACC TCACTC GGTCTCTTTTTTATA     TTTTTAAGATAGCCA 100 48
 CT43_CH5011 4961290 .. 4961314 +   -10  -3.93782   TAATAATGTTTTCTA          GGCCGTCAGT TTCAT GCTGACGGTC          TTTCGTATTCCATAA  87 38
 CT43_CH5013 4963139 .. 4963157 +  -5.4  -3.92373   GGCTGCGAGAATAAA             TAAGAAAC GTA GTTTTTTA             TTTGTGAGTACAATC  61 119
 CT43_CH5014 NONE
 CT43_CH5015 NONE
 CT43_CH5016 4966423 .. 4966440 +  -9.9  -5.76633   TTTGTCATCTTAAAA             GACACTC GAAC GAGTGTC              TTTTTTTCTATATCC 100 182
 CT43_CH5017 4967510 .. 4967556 + -18.4   -2.5474   GACACTAGTCACAAC GAAATAAAAAAAGCTGTTCCAA AGT TTGGAACAGCTTTTTTCATTAC ATCTTCTCAATCCAC 100 131
        fbp1 NONE
 CT43_CH5022 4970992 .. 4971012 + -14.1  -4.64766   ATAATTTATCGTATG            CACCAGCTA TTT TAGCTGGTG            TTTTTCCGCTATAAG 100 37
 CT43_CH5023 NONE
 CT43_CH5024 4972368 .. 4972389 + -11.7  -5.71638   ACTGCTATGAAAAAA           TCCTCTTAC AATC GTAAGAGGA            TTTTTTTACTTCTTC 100 9
 CT43_CH5026 4973392 .. 4973436 + -20.4  -5.46657   TTAAATAATATGATT AAAAAGTAAAACAGGTGGAG AGAAC CTCCACCTGTTTTACTTTTA TTTTTTATTACGATC 100 17
 CT43_CH5028 4975089 .. 4975112 + -12.6  -5.38047   TACCGGAGTAAAAAA          TAAACCACCA AAAT TGGTGGTTTA           TTTTTTATATGGATG 100 30
 CT43_CH5030 NONE
 CT43_CH5031 4976775 .. 4976795 + -10.5   -5.4148   GAGTACAAACAAAAA            GAGAGCTGA TCG TTAGCTCTC            TTTTTTCATTATTTA 100 17
 CT43_CH5033 4978871 .. 4978896 +   -12  -5.26316   GCAAATACAAAAAGA         TAACCGTAGC TGCATT GCTACGGTTA          TTTTTTATCCAGTAA 100 23
 CT43_CH5056 4996939 .. 4996962 +   -11  -4.73633   ATGTAACATAAAAAA          GCAGACTGTG GCTT CTCAGTCTGC           TTTTATCTATTATTA 100 35
 CT43_CH5062 5000952 .. 5000971 +  -9.4  -5.30616   ATATGCACTAAAAAA            CCTTAGAA TCAC TTCTAAGG             TTTTTGTTTGCCTCG 100 81
 CT43_CH5068 5008279 .. 5008327 +  -7.6  -4.58085   AATAACGCTATATTT TTGGGCAGAGAACGTGGC-ATAA TGAT TAATGGCTGCTTTTTCTGCCCAA TTTATTTGTACATAT  82 36
 CT43_CH5069 5009203 .. 5009230 + -12.9  -5.03314   TTTCAGCAATTAAAA        TAACCAAGGAG TATTTT CTCCTTGGTTA         TTTTTTAACCATACC 100 23
 CT43_CH5074 5014091 .. 5014116 +    -7  -5.62288   ATTAAATAATAAAAA         GGAGTCT-AGT TTTTC ACTTAGACTCC         TTTTTATTTTGTTCC 100 40
 CT43_CH5082 5020823 .. 5020868 + -15.9  -3.65224   AAAAGGTTAATAAAT TAAAGGGCATAACATATTA GTCATATA TAATATGTTATGCCCTTTG TTATTCAACTCACGT 100 41
 CT43_CH5084 5022287 .. 5022307 + -14.1  -5.50925   GAAAGTAACTCTTAA            GCTGGAAGA TAC TCTTCCAGC            TTTTTTATGTTGGTT 100 26
 CT43_CH5090 NONE
 CT43_CH5091 5026991 .. 5027012 +  -6.7  -4.62561   CAAGATTTATGTGTA           GCCAAGA-AT TTT ATGTCTTGGC           TTATTTTATTTATTC  79 49
 CT43_CH5092 NONE
 CT43_CH5093 5029500 .. 5029529 + -15.8   -5.5604   TTACTCTGTTTCGTT       CGCCCGTTATCC TTATTT GGATAGCGGGCG        TTTTTTATTACTTAA 100 108
 CT43_CH5094 NONE
 CT43_CH5095 5030790 .. 5030813 +  -9.7  -5.14985   TACTGCATAACAAAA          GACCTTTCA TTTACT TGAAAGGTC           TTTTTCTATATTTCA 100 31
 CT43_CH5097 5033938 .. 5033956 +  -2.5  -5.88565   AATGAGCATACGAAA            T-AAACCC TAAC GGGTTTCA             TTTTTTTCTTATGCA  79 249
 CT43_CH5099 5037609 .. 5037640 + -15.4  -4.10795   TCCTAAAGGAAATAA      GAAAGCTTTATTCC AACT GGAGTAAAGCTTTC       TTTCAATTTTTTTAC 100 145
 CT43_CH5100 5039396 .. 5039445 + -15.5  -2.84527   TTTTAAAACAGAATA GATTTTCAAAAAAATATCCCTCTT TTA AAGAGGGATATTTTTTTGAGC-TC ATTTCCTGCACATTA 100 35
 CT43_CH5101 5039853 .. 5039870 +    -7  -5.86465   GATAAAGAAAAAAAA             CCTGAC ACTCTA GTCAGG              TTTTTTTCTCTTATT 100 44
 CT43_CH5109 5047798 .. 5047825 + -14.3  -4.86731   CATATCTCAAACAAA        GGCCCTATTAC TTCATC GTAATAGGGCC         TTTTATTTACAACAG 100 78
        dps2 5048539 .. 5048557 +  -8.1  -5.39721   TCATTAAAAGCGGAA             GCGGCTC GTTTA GAGTCGC             TTTTTTATGTAATGG 100 165
 CT43_CH5111 5049073 .. 5049106 + -11.9  -3.69482   AAATAAAAATAACAA     TAAAGGCATTCCGAA ATAA TATGGAATGCCTTTA      TTCTATATTACATAA  95 7
 CT43_CH5115 5051492 .. 5051502 +  -2.6  -3.48378   TGAGAATATTATCAA                 TTAT GGT ATAA                 TATTCTTGTCACAAT  46 38
 CT43_CH5116 5052048 .. 5052073 + -12.1  -5.99154   TGAGTAATATTTCAA         TCACCTTAATA CATG TATTAAGGTGA          TTTTTTTGTTTGCTC 100 34
 CT43_CH5117 5053363 .. 5053394 + -13.2  -3.68738   AAAGCAAGTTAAACA      AAAAAGCAATGAGC CTAC GCTCATTGCTTTTC       TTAATTTATTAAAGC 100 29
 CT43_CH5123 5060605 .. 5060632 + -12.9   -5.3798   CTGAATAATAAAAAA        GCTCGTAAAAC CATTAT GTTTTACGAGC         TTTTTCTTATTATTG 100 33
 CT43_CH5128 5069417 .. 5069450 + -15.6  -5.77988   GAATAATAGGAAAAA     GGAAAAAACGAACA TGAATT TGTTCGTTTTTTCC      TTTTTTTCTATATAT 100 35
 CT43_CH5129 NONE
 CT43_CH5130 5071516 .. 5071548 + -17.1  -5.28778   TACTAATCTGAATAT      AAGCCCGAATCATGC CCT GCATGGTTCGGGCTA      TTTTTTATCCGTAAT 100 35
 CT43_CH5137 NONE
 CT43_CH5138 5080573 .. 5080590 + -11.3  -4.49556   TGGAATATAAAAAAA             GCGACTC TATT GAGTCGC              TTTCTTTCATAAGAA 100 31
 CT43_CH5144 5084412 .. 5084436 + -10.9  -5.55698   TTCCATATGAAAAAA          GAAAGGATAAG TAT CTTATTCTTTC          TTTTTTTCCATTGTC 100 51
 CT43_CH5146 5086227 .. 5086261 + -15.2  -5.16572   ATTCGAAACATGAAT     TAGTATACGCTGACCG TTT TGTTCAGCGTATACTA     TTTTTTACATTGAAT 100 69
 CT43_CH5155 5095458 .. 5095490 + -15.1  -6.01725   TTGAAAATATTAAGG      GCGTGTTTTGAACAA ACT TTTTTCAAAACACGC      TTTTTTCTTTTTGTT 100 126
 CT43_CH5162 5102940 .. 5102967 + -12.8  -3.45581   ATTTTAACATAAAAA        AACAGACCGTGA TTTC TCACGGTCTGTC         GTTTATTTTCTACAA 100 34
 CT43_CH5173 NONE
 CT43_CH5174 5115172 .. 5115200 + -10.4  -4.56597   GAGATAAATAAAAAA        GTCCTAACCTAC AAAAC GTAAGTTAGGAC        TTTTTGACGCGCCCA  95 84
 CT43_CH5175 5115711 .. 5115755 +   -11  -3.19026   GAATTAGTCTTGCTG TGAAATAGAAAAAGGATGAT ATGCA GTCATCCTTTTTCTATCACA TTACATATTGCAATA  85 42
 CT43_CH5176 NONE
 CT43_CH5177 NONE
 CT43_CH5178 NONE
 CT43_CH5179 NONE
 CT43_CH5180 NONE
 CT43_CH5181 5119261 .. 5119284 +  -4.6  -5.49579   GACTAATTATCGAAA          GAACGCTT CAGTTAAA AGGCGTTC           TTTTCTTTTTTCTCC  81 35
        clpP 5120208 .. 5120232 + -14.3  -4.73633   ATATAACTAAAAGTG          GAAGCGCCCTA TAA TTGGGCGCTTC          TTTTATATATTGTTC 100 160
 CT43_CH5205 5142093 .. 5142112 + -10.8  -3.61654   AAAAAACAGAGTTGA            CCTTCACA TTAG TGTGAAGG             TTTACAATACATGTA  89 26
 CT43_CH5206 NONE
 CT43_CH5207 5143492 .. 5143523 + -14.6  -3.87869   ACTTCGACATATAAA      GTAAAAAGCCATGC ATCA GCACGGCTTTTTAC       TTTATCCCGCATTAA 100 461
 CT43_CH5218 5156310 .. 5156330 +  -2.5   -3.4376   CCCTATAACAAAAAA            CCCCTTG CGAAAAA CAAGAGG            TTCTACTACATATAT  46 108
 CT43_CH5225 NONE
 CT43_CH5226 5163889 .. 5163911 + -13.5  -5.72053   CAGCCGTAACAAAAA           GGCCCAATC TATCC GATTGGGCC           TTTTTTATTTACTTA 100 156
 CT43_CH5229 5168193 .. 5168212 + -10.8  -5.57396   TATGAAATATTCAAA            TAGCATCC TTTA GGATGCTA             TTTTTTATTCCTTAT 100 62
 CT43_CH5230 5169082 .. 5169109 + -10.8  -5.40873   GACACAAGATTGTAA        CAGCTTTAGTACT TCT AG-ACTAAAGCTG        TTTTATTTTTCTCTT 100 26
 CT43_CH5231 5172008 .. 5172046 + -10.6  -3.09766   AGCACCTTATATAAT  GA-GAAAAGGCTGTTCCA ACATA TGGA-CAGCCTTTTCCTC  TACTTCTTTACTTTT  83 172
 CT43_CH5233 5173849 .. 5173860 +  -2.2  -3.87211   AAAAAAACGCGGCAT                GATG TAGC CGTC                 GTTTTTTCTATTAAA  50 45
        speE NONE
       speD2 5180135 .. 5180150 +    -9  -3.39895   TTCGAGATAAAAAAA              CCTTGC ATAA GCAAGG               TTCATTCATCCACCG  78 168
 CT43_CH5244 5183541 .. 5183573 +   -15  -4.20454   CAAATTTGCTTAATA      GAAAGAGGATGCTC GTTTA GAGCCTCCTCTTTC      TTTCGTTATTTGTTG 100 28
 CT43_CH5245 NONE
 CT43_CH5246 5185281 .. 5185309 + -16.2  -4.19735   AACGTAAATAAAAAA        GAAGCTATCCGA AAAAA TCGGATAGCTTC        TTTCATTTTAAGAAA 100 30
 CT43_CH5248 5188342 .. 5188396 + -13.3   -5.3671   TAGGACGTAAAATTA TA-TGAACAAATAAAAGGTGCCACCCT CAT ATGGTGGCACCTTTTATT-GTTCACTC TTTTTTAATTCTATT 100 31
       cydA3 NONE
 CT43_CH5252 5192349 .. 5192384 +  -9.8  -4.60713   AAATAATATAGTCTT    GGGGTCTGTTCCAAAA GGCA TTTTGGGATGGGCTCC     TTTTGTCATGTTTTG  93 35
 CT43_CH5253 5194270 .. 5194307 + -21.6  -3.55219   GCGGGATAAACAACA   GAAGCCCCATTTGCTA CCGTCT TAGCAAATGGGGCTTC    TTCTATAATAAAGTT 100 186
 CT43_CH5257 5201811 .. 5201837 + -22.4  -4.37013   ACATTTGTTTAAAAA         GGGCCCCTTGCA AAT TGCAAGGGGCCC         TTTTCCTAATTCGTT 100 51
 CT43_CH5260 5205227 .. 5205249 +  -8.5  -6.17669   TAAAGAAGAAAAGAA          GAGTGCTGAG TAAT CTCAGC-CTC           TTTTTTTATTTTCTT 100 13
 CT43_CH5261 5205633 .. 5205649 +  -2.2  -2.72829   GTGAAACTTTAATCA              GCCC TCACCAATC GGGC              ATTTGCGGGCATATG  40 37
        dat2 5206687 .. 5206710 +  -6.8  -5.58179   GCATTTAAATGGAAA          TCAAGGTGTA AATT TATGCCTTGA           TTTTTTCTTGTAATC  93 77
 CT43_CH5264 5208599 .. 5208620 + -13.1  -4.82154   ATTAATAGTTTCCAA           GCCTTCTAG TTTA CTAGAAGGC            TTTTTGCTATGAGTT 100 40
 CT43_CH5266 5210174 .. 5210198 + -11.6  -5.15634   ATAAACTTATATAGA          GTCTTCTCTT TCTCC AAGAGAAGAC          TTTTTTCATGCAATC 100 37
 CT43_CH5267 5211175 .. 5211193 +  -3.2  -3.35097   AAGGACAGACATTGT             TATGATGA CTC TCGTTATA             CTTCTTTTATTTCTT  46 21
 CT43_CH5268 5212484 .. 5212514 + -14.9  -4.19678   GATAAATAATAACAA       TAAGCACAGAGCG CCGTA TGCTCTGTGCTTA       TTTATTGCCGTATAA 100 32
 CT43_CH5271 5216233 .. 5216258 +    -9  -5.22481   ACTGCTAAATTACAA         GCCGGTTCTC TTTATT GAGAGCTGGC          TTTTATTTATTTATA  95 47
 CT43_CH5272 5216610 .. 5216646 + -13.1  -5.80951   CATAATTGAAAAAAA    GATATCACCTCGCCGGA TTT TTCGGCTAAGTGATATC    TTTTTTATTTTCCCT 100 36
 CT43_CH5276 NONE
 CT43_CH5277 5224813 .. 5224848 + -14.9  -3.34013   TATAAAGTGAAACTT    TAATCAGTGGGGGTT TTGTTC ATCCCCCACTGATTA     TTAGTTGAACCAATC 100 36
 CT43_CH5280 5227339 .. 5227367 + -11.1  -3.61517   AAAGTAAAACTCGGA        TCAGTGGGGAT TTTATTC ATCCCCGCTGA        TTATTAGCCCGCAAT  89 39
 CT43_CH5281 5227667 .. 5227696 + -15.2  -5.45652   CTATAAAATGAAAAA       GACGAATCTGCA TCATTT TGCAGATTCGTC        TTTTTTCTTCGGCAT 100 35
        comK 5228745 .. 5228795 + -16.6  -4.98436   GATTCATCACCTTAA TAACAAATAGAATGGAAGGTAG TATTTCC TTACCTTCCATTCTATTTGCTA TTTTTATCCTCTTAC 100 26
 CT43_CH5289 NONE
 CT43_CH5290 5234506 .. 5234533 +  -8.6  -4.56775   TTTTCTAATATAAAA        GCTATCCAAT CACACACA ATTGGATAGC         TTTTTCAAACAAAAT  89 91
 CT43_CH5341 5289235 .. 5289267 + -16.5   -4.4891   AATTTCTACAAAAAA      CCCCCAGTATGAA CAAATAA TTCATACTGGGGG      TTTTATAGTGCTAAA 100 6
 CT43_CH5361 5304394 .. 5304424 + -12.8  -4.82901   GAGATTCTTGAAAAA       GAACTTACTTCATT ACA ATTGAAGTAAGTTC       TTTTTATGAAACAAA 100 57
 CT43_CH5362 5305171 .. 5305211 + -13.4  -3.67597   CTGACCAGCTAAGGT  TCTCTCGCACAAAAGGTG CTTTT TACCTTTCGTGCGGGAGG  TTCTTAGATGCGAAG 100 64
 CT43_CH5377 5319278 .. 5319335 + -17.3  -3.43925   TCGATGAAATGTTAA ACGAATATTAAAAAAAGCGCCGTCACT TTAA AGTGGCGGCGCTTTTTTTATTACTTGC TCTCTTTATTCGTAA 100 15
 CT43_CH5386 NONE
        uvsE 5331709 .. 5331747 + -18.5  -5.00884   AATTAAAAGAATAAG   TGGTGCAAAGTTACAGT GGTAA ATTGTAACTTTGCACCA   TTTTTTCAAAAAAGT 100 4
 CT43_CH5388 5334522 .. 5334544 +  -9.9  -5.03314   TACTCCATAAAAAAA           CAACCGTCT AAATA AGGCGGTTG           TTTTTTAAAACTCAA 100 15
 CT43_CH5391 5337571 .. 5337597 +  -9.5  -4.65895   AAATAAGTATAAAAA         GAAGGTCACCT CTCAT AGGTAACCTTC         TTTTTACATCCAACC  93 35
        maP3 5341926 .. 5341962 +  -4.6  -5.61881   ATCTAATACCAAAAA    CGGCTGTTTTGT AGATTTATTCCAC ATAAAACAGCCG    TTTTTATTTTTGGGA  83 35
 CT43_CH5397 5352698 .. 5352727 + -12.4  -5.60993   TTAATAATGTTTTTA       CATCCAATCAAT CTCTCA ATTGATTGGATG        TTTTTTTATACAAAA 100 37
 CT43_CH5398 5354594 .. 5354617 +   -14  -4.63218   GCTTAATCAATAAAA          GACCACTGAT TTTT ATCAGTGGTC           TTTTATTGAGAAAAA 100 35
 CT43_CH5399 5355108 .. 5355134 + -14.6  -4.41895   TACAATCCAATAAAA         TAAAGGGCCTTT CTC AAGGGCCCTTTA         TTTTGCTTCCCAATT 100 28
 CT43_CH5405 5360167 .. 5360201 +  -9.4  -5.41787   CACTATTTTAACGCA     CTAAAAAAGGAGCGAA CGA TTCGCTCCTTTTATGA     TTTTTCTATTTTTTG 100 22
 CT43_CH5407 5361838 .. 5361862 +  -7.2  -5.80817   TGCATAAGAAAAAGA          GCTATTCCCA TCGTT TGAGAATAGC          TTTTTTTGTGTTGCG 100 34
 CT43_CH5414 5366663 .. 5366685 +  -9.9  -5.45802   AGCACGTGCCTTTGA           GCTCCTTTC TTAAT GGAAGGAGC           TTTTTATTTTCGAAA 100 13
 CT43_CH5415 5368824 .. 5368870 + -16.3  -3.21099   AAAATATCTTCCTTG GT-AAAAAAAAATAGCTGACGG GCAT CCGTCAGCTATTTTTTATTCAC TTAATAATGCAAGGC 100 22
 CT43_CH5418 5370385 .. 5370411 + -13.9  -4.59982   ATTTCAAGTTTTTCA         TAAGAAGCAGC CACTA GCTGCTTCTTA         TTTCTTTCCTTCTAA 100 40
 CT43_CH5425 5377393 .. 5377429 + -15.5  -3.71917   TTAGAAAAAATTGCA    GAATAAAAAGGATGCAT GTA ATGCATCCTTTTTATTA    TTTCACCTTTAAGCT 100 20
 CT43_CH5426 5378376 .. 5378396 + -15.5   -4.2231   TTAGAAAAATAAAAA            TGACCACCC TAA GGGTGGTCA            TTTTCCATACTAATT 100 29
 CT43_CH5428 5380402 .. 5380418 +  -8.7  -5.96894   TATAATATTGAAAAA              GGGACGA AAT TCGTTCC              TTTTTTTATTTCCCT 100 36
 CT43_CH5429 5381863 .. 5381878 +    -9  -6.11229   TTTTAATGATGAAAA              GCTAGC TCAC GCTAGC               TTTTTTTATTTTCCT 100 35
       cwlJ2 NONE
        gerQ 5382908 .. 5382933 + -10.5  -5.33785   ACTCCAAGACCATAA         AAAAAGCTGGC AAAT GCCAGCTTTTG          TTTTTTATAATCCTT 100 26
 CT43_CH5435 5386099 .. 5386126 +  -8.5  -3.63341   AAAATCAAACTTGGA        TCATTGGGGTT TTATCC ATCCCCAATGA         TTATTAACCGATATT  77 88
 CT43_CH5436 5387104 .. 5387132 + -13.4  -5.33026   TTTTCATTCACAAAA        CCTATTTGAAGT CAAAT ACTTCAAATAGG        TTTTTATTTAAATTC 100 43
 CT43_CH5437 5387591 .. 5387624 + -12.7  -3.59995   ACGAACAACAATAAT     AAAAAGGTAGTTAAC GACT GTTAACTACCTTTTC      TATTTATAAATTTGG 100 27
 CT43_CH5443 5392794 .. 5392824 +   -20  -4.52142   ATTTTAAATAGAAAA       GAGCCTATTAAGCA AGC TGCTTAATAGGCTC       TTTCTGTTTTATGGT 100 2
 CT43_CH5447 5398226 .. 5398256 + -14.2   -5.7946   ACAAATTAACAAAAA       TAGACAGTGGAG ACGAAAG CTCCACTGTCTA       TTTTTTTATTACACA 100 32
 CT43_CH5449 5399744 .. 5399773 +  -8.7  -3.08046   TAAAAATATAAAAAA       ACAGCATTAACGT TTAC ATGTTAATGCTGC        CTTTTCGAGTGACGA  72 30
       thiD2 5403832 .. 5403865 +  -5.4  -5.28826   ATATATAAATAAAAA     CACTCACAAGGTTCA TACAT TGACTC-TGTGAGTG     TTTTTTATAAGCTTT  80 40
 CT43_CH5459 5409836 .. 5409853 +  -5.5  -4.57341   GAACAAATAAAAAAA             GCAGCGA TATT TCGCTAC              TTTTTCGAACGCATT  71 79
 CT43_CH5463 5414381 .. 5414410 + -13.9  -4.13591   AATTAATAAAGGCCA       TTAAGAGAATTCT ATCT AGAATTCTCTTAA        TTTATATACTATTCA 100 22
 CT43_CH5464 5416000 .. 5416016 +  -9.5  -5.54907   CTTCCATCAAAAAAA              GAATCCA GAA TGGATTC              TTTTTATTTTCTGAA 100 205
 CT43_CH5466 NONE
 CT43_CH5467 NONE
 CT43_CH5468 5419471 .. 5419499 + -10.5  -5.66229   AGCTAATATAAAAAA        CCTCTTAATTTAT TGC AAAAATTAAGAGG        TTTTTTATTCTTAAT 100 54
 CT43_CH5469 5420912 .. 5420926 +  -2.9  -3.32268   AAAACGCATCCTACC               TGTTT GTAGG AAACA               TTACTGTCCGTTTTG  46 160
 CT43_CH5470 5422306 .. 5422332 +  -7.5  -5.31158   GCTTAAAAGCAAAAA        GCTTTTCCTATT TAAA AAT-GGAAAAGC         TTTTTGCTTTTTTTA  91 35
 CT43_CH5471 5425295 .. 5425312 +  -9.9  -3.25823   TCAATGAATCATGAA             GCTATCC AATT GGATAGC              TTCATATAAAAACGC  82 48
 CT43_CH5472 5426315 .. 5426338 + -11.2  -5.39721   AGGCTTAACAAAAAA          GTTACTTCTA TAGG TAGAAGTAAC           TTTTTTATATCCTAA 100 33
 CT43_CH5475 5429655 .. 5429695 +   -13  -5.08088   ATAGTAAGTAGTCTT TAAG-AAAAAACTCCTTGT GTAG ACAAGGAGTTTTTTACTTG  TTTTTATTAAGAATT 100 30
 CT43_CH5477 5433843 .. 5433865 + -12.1   -5.4505   AAAATAGCAAAAAAA           TAACCTCGC TAACT GCGAGGTTA           TTTTTTATTCCCAAA 100 34
 CT43_CH5484 5441694 .. 5441737 + -24.3  -5.59962   AAGTATTAGATTAAA CGTAAAAGAGGAAGCATCT CATTTA AGATGCTTCCTCTTTTACG TTTTTATTTATTTTG 100 27
       sodA2 5445648 .. 5445670 +   -12  -4.10331   CGAAATCCTCCAGAA           TCCCCCGG ATTGCCA CCGGGGGA           TTTATGATTACTTCA 100 84
 CT43_CH5493 5450192 .. 5450239 + -15.4  -3.38316   TGATTTGAAAGAATC ATAAATAAAAAACTATCCAC-CT ATT AGAGTGGATAGTTTTTTATTTAC TTAATTGCCTCATGA 100 22
        guaC 5453156 .. 5453185 + -18.1  -4.84527   TCTTAAATTTAAAAA       GAAGGAGAAGCAT TTCT ATGCTTCTCCTTC        TTTTTCATATATAAA 100 42
 CT43_CH5497 5455099 .. 5455123 + -10.8  -4.04326   ATCAAGAATAAAAAA          TAAGCCCTCG CTTTA TGAGGGCTTA          TTTCATATTTACTTC  93 30
 CT43_CH5501 5459085 .. 5459103 + -10.3  -4.86773   TTCTACAATAGAAAA             CAGGAGG TAGGC CCTCCTG             TTTTTAATACTTTTG 100 136
 CT43_CH5519 5477466 .. 5477497 +  -9.7   -5.2197   TCCGCATTAAAAAAA      GCAAACCATC-TAT AAATA ATAAGATGGTTTGC      TTTTTAATTTTTCTG 100 11
        rpmH 5486393 .. 5486414 - -13.1  -5.67967   ATTATTAGAAAAAAA           GACCACTGA ACGA TCAGTGGTC            TACGCAGATAATACT 100 25
        rnpA NONE
    spoIIIJ2 5485169 .. 5485182 -  -2.4  -2.94695   TTAGCAGTAATTATA               CTCA CTTGCT TGAG                CCTCCAGCTTTGTTA  42 13
         jag 5484462 .. 5484494 - -13.7  -5.08824   TCCCCATGTAAAAAA      CACTAAACTTATTCA CAG TGGATAAGTTTAGTG      TTTTTTAGTTATCCA 100 87
        trmE NONE
        gidA NONE
        gidB 5480215 .. 5480230 -  -6.2  -4.37886   CTATTCTCCATAAAA              TGTTTC CTAT GAAACA               TTTACGTTTTCATTT  74 70
 CT43_CH5522 5479257 .. 5479283 -  -8.1  -4.48903   GAAAATATAGTAAAA        GAGACCTC-TCC AATA GGATAAGGTCTC         TAACACGTCATTATT  85 39
         soJ NONE
       spo0J 5477466 .. 5477497 -  -9.7  -5.52384   TCCGCATTAAAAAAA      GCAAACCATC-TAT AAATA ATAAGATGGTTTGC      TTTTTAATTTTTCTG 100 29
 CT43_CH5518 NONE
 CT43_CH5517 5475491 .. 5475517 - -12.5  -5.72207   GCCAAACGAAAAAAA         GTAACAGTTAC CTACT GTAACTGTTAC         TCTCCCTCTATTCTT 100 33
        ychF 5474247 .. 5474275 - -11.9  -5.47431   CCAATACATAAAAAA        CTTGGCAAACATA TAA TATATTCGCCAAG        CTCATATCTTTATTT 100 59
        rpsF 5473790 .. 5473803 -  -5.3  -3.30731   CCAACGAGGATAACA               CGATT CATC AATCG                AACCACTCTCCCTTA  56 49
        ssb1 NONE
        rpsR 5472948 .. 5472997 - -18.3  -5.42198   TTTCAAAAAAGAAAA GCATAGCAAAATGCACAGTAGAGT CCG ACTCTACTGTGCATTTCA-TACGC TATTATTCACCAACA 100 28
 CT43_CH5512 5471930 .. 5471949 -  -2.2  -4.61873   TCCTATAAAGTAAAA            CTAACT CACCTTCC AGTTAG             TTAAACAGATTAAAA  59 60
 CT43_CH5511 NONE
        rplI NONE
 CT43_CH5509 5468066 .. 5468096 -  -4.9  -5.69473   TACACCATAAAAAAA       GAAACACATCT TATTATAAG AAATGTGTTTC       TTTTTTATACTGCCT  85 41
        purA 5466572 .. 5466587 -  -7.6  -5.94214   AAGATAAGAAAAAAA              CTCATG CGGA CATGAG               TTTTTTCTAAAAATA 100 45
        yycF NONE
        yycG NONE
 CT43_CH5505 NONE
 CT43_CH5504 NONE
 CT43_CH5503 NONE
 CT43_CH5502 5459085 .. 5459103 - -10.3  -4.73682   TTCTACAATAGAAAA             CAGGAGG TAGGC CCTCCTG             TTTTTAATACTTTTG  95 29
 CT43_CH5500 5458288 .. 5458298 -    -4  -4.06214   ATAATAAAATAAATA                 TGAT AAT ATCA                 GCGTCTTACCTTTGT  58 56
 CT43_CH5499 5456132 .. 5456159 -  -4.9  -4.32048   TAATAATATTTAAAA        GACCATCGG TAATTTTTGT CCAATGGTC         TTTTTATCCTTTTTA  64 97
 CT43_CH5498 5455099 .. 5455123 - -10.1  -5.66229   ATCAAGAATAAAAAA          TAAGCCCTC GCTTTAT GAGGGCTTA          TTTCATATTTACTTC 100 34
 CT43_CH5495 5451777 .. 5451798 -    -3  -4.98522   AACCTCACATAAAAA           GGTGAATC ATGCCA GATTCATC            TTTTTATATAGAAAT  67 125
 CT43_CH5494 5450191 .. 5450240 - -14.1  -2.96298   ATGATTTGAAAGAAT CATAAATAAAAAACTATCCAC-CT ATT AGAGTGGATAGTTTTTTATTTACT TAATTGCCTCATGAA 100 21
 CT43_CH5492 NONE
      galE_1 5447673 .. 5447699 -  -3.8  -6.15536   AATGAATAAAAAAAA        TGACCTATCGC TTTTAT GCAA-AGGTCA         TTTTTTTATTCATCA  95 41
 CT43_CH5490 NONE
 CT43_CH5489 5446615 .. 5446656 - -12.7  -3.13141   TAAAACGCTAATATA TAAAAAAGCATGAAATCAGT TTA AC-GATTCCATGCTTTTCTA CAGAAAATATATTAA 100 37
 CT43_CH5488 5445648 .. 5445670 -   -12  -3.32294   CGAAATCCTCCAGAA           TCCCCCGG ATTGCCA CCGGGGGA           TTTATGATTACTTCA  89 33
         nos 5443508 .. 5443529 - -10.3  -5.24291   AAAAGCAAAACAAAA           GACCTTATA TTTC TATAAGGTC            TTCGAAACAGAAATT 100 170
 CT43_CH5485 5441694 .. 5441737 -   -25  -3.87318   AAGTATTAGATTAAA CGTAAAAGAGGAAGCATCTC ATTT AAGATGCTTCCTCTTTTACG TTTTTATTTATTTTG 100 33
 CT43_CH5483 NONE
 CT43_CH5482 5437573 .. 5437596 -  -9.6  -4.82128   GGATGAAATACAAAA          GCTGCTTCTT AAAT ACGAAGCAGC           TTCTTGAGTTCTTTT 100 10
 CT43_CH5481 NONE
 CT43_CH5480 5436224 .. 5436262 - -11.9  -5.09762   ACTGTAACATAAAAA   GCAAGCTATCAGTAGAA ATCTG TCCTACAAATAGCTTGC   TTTTCTTATTTTTTA 100 52
 CT43_CH5479 5434890 .. 5434918 - -17.7  -4.43859   CATAATGTTATAAAA        GAAAAAGCATCGA ACA TCGATGCTTTTTC        TCTACTTCACTTTAT 100 37
       msrAB 5433843 .. 5433865 - -12.1  -5.69023   AAAATAGCAAAAAAA           TAACCTCGC TAACT GCGAGGTTA           TTTTTTATTCCCAAA 100 23
 CT43_CH5476 5429665 .. 5429684 - -10.8   -5.4505   GTCTTTAAGAAAAAA            CTCCTTGT GTAG ACAAGGAG             TTTTTTACTTGTTTT 100 43
 CT43_CH5474 5427314 .. 5427336 -  -2.8   -3.5394   AAATCCCCTCCTAAA           TTAATTAACC ACC GTTCAATTAA           TGTTAAAAAGAAAAT  46 44
 CT43_CH5473 5426315 .. 5426338 - -11.2  -5.45652   AGGCTTAACAAAAAA          GTTACTTCTA TAGG TAGAAGTAAC           TTTTTTATATCCTAA 100 44
 CT43_CH5465 5416000 .. 5416016 -  -9.5  -5.52384   CTTCCATCAAAAAAA              GAATCCA GAA TGGATTC              TTTTTATTTTCTGAA 100 29
 CT43_CH5462 5411789 .. 5411804 -  -7.6   -5.0917   GTACTAAAAAATAAA              GCTAAC AAAA GTTAGC               TTTTATTTTTATCAT  89 37
 CT43_CH5461 NONE
 CT43_CH5460 5409836 .. 5409853 -  -7.7  -6.08342   GAACAAATAAAAAAA             GCAGCGA TATT TCGCTAC              TTTTTCGAACGCATT 100 22
 CT43_CH5457 NONE
        cstA NONE
 CT43_CH5455 5405078 .. 5405105 - -11.4  -5.66989   GAAACAGCAAAAAAA        TAAAAAGGGCGA AAAC TCGCCCTTTTTC         ATTAACAACAGCGTG 100 27
 CT43_CH5454 5403832 .. 5403865 -  -5.4   -5.4433   ATATATAAATAAAAA     CACTCACAAGGTTCA TACAT TGA-CTCTGTGAGTG     TTTTTTATAAGCTTT  84 63
 CT43_CH5452 NONE
 CT43_CH5451 5400578 .. 5400598 -  -8.3  -5.60993   TTTTCCATAAAAAAA            GTCCACCTT CTA AAGGCGAAC            TAGGTCTTACGACTT 100 46
 CT43_CH5450 5399745 .. 5399772 -   -10   -5.9667   AAAAATATAAAAAAA        CAGCATTAACGT TTAC ATGTTAATGCTG         CCTTTTCGAGTGACG 100 54
 CT43_CH5448 5398226 .. 5398256 - -14.2  -5.25906   ACAAATTAACAAAAA       TAGACAGTGGAG ACGAAAG CTCCACTGTCTA       TTTTTTTATTACACA 100 34
 CT43_CH5446 NONE
        metA NONE
        hom2 5392794 .. 5392824 -   -20  -4.79451   ATTTTAAATAGAAAA       GAGCCTATTAAGCA AGC TGCTTAATAGGCTC       TTTCTGTTTTATGGT 100 49
 CT43_CH5442 5391095 .. 5391105 -  -3.2  -4.17491   ACGAAATTTTGAAAA                 GCGA TTT TCAC                 ACCTTCTCAATTATG  57 36
 CT43_CH5441 NONE
 CT43_CH5440 NONE
 CT43_CH5439 NONE
         ung 5387596 .. 5387619 - -12.6   -5.3798   CAACAATAATAAAAA          GGTAGTTAAC GACT GTTAACTACC           TTTTCTATTTATAAA 100 34
 CT43_CH5434 NONE
 CT43_CH5433 5383363 .. 5383375 -  -3.5  -2.99179   ATATAAGCCAAACGA                TTTAA TTC TTAAA                AATCAAATAAAGAAT  46 21
 CT43_CH5432 5382913 .. 5382928 - -10.4  -5.70829   AAGACCATAAAAAAA              GCTGGC AAAT GCCAGC               TTTTGTTTTTTATAA 100 35
        eutD 5378376 .. 5378396 - -15.5  -5.69262   TTAGAAAAATAAAAA            TGACCACCC TAA GGGTGGTCA            TTTTCCATACTAATT 100 51
 CT43_CH5424 5376168 .. 5376190 -  -7.1  -5.61596   ATGGGCATAAAAAAA           GAAGAGTAA TCTTT TCACTCTTC           TTTTTCTTACTTATT 100 32
 CT43_CH5423 5374772 .. 5374784 -  -4.9  -3.12909   GAAATATAGAAACGA                TTAGT CCT ACTAA                AATCGTTAATATAGA  52 70
 CT43_CH5422 NONE
 CT43_CH5421 5372960 .. 5372984 -    -7  -3.41527   CAACGTCCATTAGAA          GTCCCCCCTC TTCAC GAGGGGGTTC          TACTTAAGCTTTTTT  65 29
 CT43_CH5420 5371822 .. 5371845 -    -9  -5.98675   TATAAAAAGAAAAAA          TCACCTTTAC CGAA GTAAAAGTGA           TTTCCTTTATACATT 100 39
 CT43_CH5419 5370388 .. 5370408 - -11.9  -3.30159   TCAAGTTTTTCATAA            GAAGCAGCC ACT AGCTGCTTC            TTATTTCTTTCCTTC  89 26
 CT43_CH5417 5369407 .. 5369419 -  -3.3  -2.65938   TAAAAATTATAACAG                GCCAA AAA TAGGC                GCAATGATACTTTGT  44 4
 CT43_CH5416 5368835 .. 5368858 - -15.4  -6.06723   CTTGGTAAAAAAAAA          TAGCTGACGG GCAT CCGTCAGCTA           TTTTTTATTCACTTA 100 30
 CT43_CH5413 NONE
 CT43_CH5412 NONE
 CT43_CH5411 5364214 .. 5364231 -  -9.9   -5.0065   TATGTATAAAGAAAA             CCCTTTC TTAA GAAAGGG              CTTTTGTCTCTATTT 100 15
        speE 5363191 .. 5363201 -  -5.4  -3.70571   GACAAACACCTTAAA                 TGAG CTA CTCA                 CACTTTATTTGTTCA  59 53
 CT43_CH5409 NONE
 CT43_CH5408 5361938 .. 5361983 - -19.4  -2.75993   TTACCGACACATAAC GACAAAATAAGAGCCCTCTA ATCATA TAGAGGGCTCTTACTTTATC TAGCTACGCCTCTCT 100 64
 CT43_CH5406 5360175 .. 5360193 - -13.2  -5.18357   TAACGCACTAAAAAA             GGAGCGAA CGA TTCGCTCC             TTTTATGATTTTTCT 100 28
 CT43_CH5404 NONE
        argS 5356709 .. 5356734 -   -12   -4.9725   ATCTCCATACAAAAA         GGCAATCACA ACATCG TGTGATTGCC          TTTTACTGAAAGCGA 100 165
 CT43_CH5402 NONE
 CT43_CH5401 NONE
 CT43_CH5400 5355108 .. 5355134 - -12.4  -4.73635   TACAATCCAATAAAA         TAAAGGGCCTTT CTC AAGGGCCCTTTA         TTTTGCTTCCCAATT 100 23
 CT43_CH5395 NONE
 CT43_CH5394 5339186 .. 5339197 -    -3  -5.19328   ATGTGATAATAAAAA                GTAT CAAC ATAC                 TGCTTCCTAGCACAA  71 159
 CT43_CH5393 NONE
 CT43_CH5392 5337571 .. 5337597 - -11.7  -5.05301   AAATAAGTATAAAAA         GAAGGTCACCT CTCAT AGGTAACCTTC         TTTTTACATCCAACC 100 29
 CT43_CH5390 NONE
        papR 5334522 .. 5334544 -  -7.7    -5.626   TACTCCATAAAAAAA           CAACCGTCT AAATA AGGCGGTTG           TTTTTTAAAACTCAA 100 30
 CT43_CH5385 5327093 .. 5327113 - -14.1  -3.31144   TCCCTACGTTGAGAA            GAGGTGCAA TCA TTGCACCTC            TTTCTAAAGTTGTAT 100 54
 CT43_CH5384 NONE
 CT43_CH5383 5324959 .. 5324971 -  -5.5  -3.57792   GCATTTATTCGTAAA                CGTAG AAT CCACG                ACCTGTTTTACGCCC  59 2
 CT43_CH5382 NONE
 CT43_CH5381 5322555 .. 5322574 -  -9.3   -4.8622   TTTTGGAAGGAAAAA            GCGTAGG AGAATA CCTACGC             TTTCGTTCCTACTTC  93 34
 CT43_CH5380 NONE
        rpoE 5321057 .. 5321105 -  -8.5  -6.07374   ACAAAAAACAAAAAA GAAAATTGCTCCC--CTCATCAC ATAAA GTAACAAGTAGGGAGCAATTTTC TTTTATATTTACACT 100 113
        pyrG 5319279 .. 5319334 - -18.6  -3.73107   CGATGAAATGTTAAA CGAATATTAAAAAAAGCGCCGTCACT TTAA AGTGGCGGCGCTTTTTTTATTACTTG CTCTCTTTATTCGTA 100 19
       spo0F 5318060 .. 5318075 -  -4.8  -4.37734   CAGAATAAGGTAAAA              TATGTA TATC TACATA               CCGGACTTTTTTCTA  67 144
        fba2 5317079 .. 5317108 - -15.9  -4.05245   CATTATACAACGAAA       GGAAACCGTCTAA AAGA CTAGACGGTTTCC        AAAACGGAATTTTAT 100 43
       murA2 5315453 .. 5315503 -  -9.9  -3.85698   GTGTTTTTCTATAAA GTG-TACTTCCGCAAGTAGTGATGC TTC GCTTC-CCCCTTACGGAAGTATCAC TTATGCGTTCTTCAT  87 26
        glpX 5314186 .. 5314227 -   -14  -4.19177   ACGTTGGAACACAAA TACAAGAAGCGAAGACAA GAAAAT TTGTCTTCGCTTCTTATT  TAATTTAGTTCCGGC 100 220
         rho 5312716 .. 5312739 - -10.4  -5.35222   AAAAGGCATAAAAAA          CTCGCTTACT ATAA AATAAGCGAG           TCCCAATCTTTTCCC 100 42
       rpmE2 5311945 .. 5311972 -    -7  -5.93809   TTTTCACAAAAAAAA        CAGACAAGCGAA TACA TACACTTGCCTG         TTTTATGTTTTTATT 100 39
         tdk 5311270 .. 5311287 -  -2.6  -5.42259   CTATTCTGAAAAAAA             CCCGCC TTGCGC AGCGAG              TTTTACTTATCTTTG  72 28
        prfA NONE
        hemK 5309210 .. 5309235 - -11.3  -5.60993   TTTCCCACAAAAAAA         TAGAGTAAGGT GTGA ACCTTACTCCA          TCTCTGCAAATACCA 100 18
 CT43_CH5367 5308205 .. 5308242 - -17.3  -3.29263   ACACTTTCTTCATAA   TAAATCCCTCCTCATTT TTAT ATATGAGGAGGGATTTA    TCAATAGTACTATTT 100 35
 CT43_CH5366 5307711 .. 5307743 - -12.9  -4.46775   TATCCAAAAGACAAA      CAAGGTTTATCCACA AAA TGTGGATAAACCTAA      TTAATCCGTGGATAA 100 26
 CT43_CH5365 NONE
 CT43_CH5364 5305912 .. 5305925 -  -3.9  -3.00418   CATCGAGGAAAGAAG               GTTAA AAAC TTAAC                ATACCATTCCAATAG  48 69
 CT43_CH5363 5305433 .. 5305454 -  -9.5  -5.20783   ACTCAAACATAAAAA           TCCCCTG-CT TTT AGTCAGGGGA           TTTTATCATTGTAAT 100 31
 CT43_CH5360 5303047 .. 5303080 -  -9.7  -5.12971   AATATGCAACAAAAA     TAAGGAATCCATTTC ATAC GAAACGGATTCCTCT      TATACAGCAATTATT 100 36
 CT43_CH5359 5302389 .. 5302403 -    -5   -3.0464   AAGTGATCTCCAATA               TCGTAT TAT ACACGA               AACATCAACCTACTG  52 30
 CT43_CH5358 5301851 .. 5301861 -    -4  -2.64243   TTATATTTCACACTA                 CTAA TAG TTAG                 AATCTATTACTTTGT  46 32
 CT43_CH5357 5301115 .. 5301157 - -19.6  -2.62616   TGACTTTCTATATCA TAAAAGAAAAAAAAGACCGA AAA TCGGTCTTTTCTTTCTTCTA CTATAAAGTCAGACA 100 97
        glyA 5299692 .. 5299721 -  -8.6    -5.252   TATGTCCACAAAAAA       GACCGCCAAAAC AATTAA GTCTCGGCAGTC        TTCTTCAATCTATTA  95 38
         upp NONE
 CT43_CH5354 NONE
 CT43_CH5353 NONE
        atpI 5297718 .. 5297737 -  -2.2   -2.6585   AGAAATTCAACTAAT            TTACC-GTG TTC CACTAGTAA            TTCACCTCTCTTCCC  40 27
        atpB NONE
        atpE 5296683 .. 5296716 - -11.1   -3.6053   TCGTTCATAAAGCAA     TGGCGAAGAAAGTTC GGAA AAACACTCTTCGCCA      TCTATGTAAGGGGAG  89 47
        atpF NONE
        atpH NONE
        atpA 5293869 .. 5293898 - -14.5  -3.09516   TTGCTCATGATTGAA       GGAAAAGAATAGG TGCA CCTACTCTTTTCC        TTTACATAACCGTCA 100 170
        atpG NONE
        atpD NONE
        atpC 5290867 .. 5290891 - -15.1  -6.32216   ATACACAAAAAAAAA          TCCGTAAAGGC AAG GCCCTTACGGA          TTTTTTTACTTCATA 100 31
 CT43_CH5343 5289948 .. 5289958 -  -2.6  -3.58726   GCCTCCTATACACAA                 TAAT TCT ATTA                 GTATAGCATGTTCCT  48 39
 CT43_CH5342 5289235 .. 5289267 - -17.2  -5.25803   AATTTCTACAAAAAA      CCCCCAGTATGAAC AAATA ATTCATACTGGGGG      TTTTATAGTGCTAAA 100 36
        nuoA NONE
        nuoB NONE
 CT43_CH5338 NONE
        nuoD NONE
        nuoH NONE
        nuoI NONE
        nuoJ NONE
        nuoK NONE
        nuoL NONE
        nuoM NONE
        nuoN 5276151 .. 5276184 -  -8.3   -4.7033   CAAGTTAACACAAAA     TAAAAAGCGCAGAGT ACTG ACTCCACACCTTTTA      TTTTCACTATTGTAC  85 32
 CT43_CH5329 NONE
 CT43_CH5328 NONE
       murA1 5273617 .. 5273646 - -12.3  -5.57054   AATAACCCAAAAAAA       TAGCCCCTATGTC AAAA GACATAGAGACTA        TTTCAATTAAGCGTG 100 32
      spoIID 5272398 .. 5272435 - -17.3  -3.40112   ATGATATTTTAAACA   GAAAAAATAGGTGCCAG AGTT CTGACACCTATTTCTTC    ACCATCAATTTTCCT 100 16
 CT43_CH5325 5271258 .. 5271282 -  -8.7   -3.7331   AGGCGCATTAAAATA          CCGGTAAAA GGAGTAT TTTTACCGG          TGAATGAATCGCATG  77 62
 CT43_CH5324 NONE
 CT43_CH5323 5269570 .. 5269587 -  -4.8  -6.07374   AGAAAAAAGAAAAAA             CTGAGC TTTTCG GCCCAG              TTTTTAGTCCATTTG  93 29
 CT43_CH5322 5268488 .. 5268510 -  -7.1  -6.23317   ATAAAAATAAAAAAA           TCAATTCTC TTGAT GAGAACTGA           TTTTTTCACTTTATT 100 39
 CT43_CH5321 5268081 .. 5268104 -  -7.5  -5.41143   TATGGCCCAAAAAAA          TGACACCTT GTATAA AAGGCGTCA           TTCTTCTCGTTCCAA 100 23
     spoIIID 5267390 .. 5267404 -  -6.4   -4.2349   CCTCGATATTCAAAA               TCAGGT TAC ACCCGA               ATTCTTTTCACCTAA  70 142
 CT43_CH5319 5266328 .. 5266351 -   -14  -6.11019   AAAAACGAAAAAAAA          GAACTAAGGC ATTA GCCTTAGTTC           TTTCAAATTATCTCA 100 33
        fabZ 5265457 .. 5265480 -  -7.5  -5.42514   GCAGAAATTAAAAAA          TCCCCTTGT CTTTTC ACAAGGAGA           TTTTTTAGTACTATC 100 40
 CT43_CH5317 5264436 .. 5264468 - -12.3  -4.17316   ATTTTCGGAAAACAA      TAAAAAACCAACAAA AAT TTTGTTGGCTTTTCA      TATTTTAGTAATAAC 100 30
 CT43_CH5316 NONE
 CT43_CH5315 5262744 .. 5262768 -  -4.3  -5.16572   ATTCAAGGGAAAAAA          GGAGATATGGT TGA AACATATCTCA          CCCTTTTAATTAGTT  77 35
 CT43_CH5314 5261702 .. 5261759 - -19.7  -3.67775   ATTTGTATGTAACAA TAACAAAAACCCTACCTATAGAGTCAT TTTT ATAACTCCATAGGTAGAGTTTCTATTA GAAATAAATTATGGG 100 169
        galU NONE
 CT43_CH5312 NONE
 CT43_CH5311 5258615 .. 5258664 - -24.3  -3.87869   TCAATCCCCTATAAA TTAAGATAAAGACTAAAATAGAT AATT ATCTATTTTAGTCTTTATCTTAA TTTCTTTATTTATAA 100 166
 CT43_CH5310 5257302 .. 5257318 -  -8.1  -3.98172   ATTAATACCTATAAA              TGCTTTA TTT TAAAGCA              AATTTTTAATCACCT  79 18
         maa NONE
 CT43_CH5308 5255257 .. 5255271 -  -2.8  -4.87291   CATCCTAACTAAAAA               TTAAGG TGG CCTAAA               AAACACATTAAATGC  63 33
 CT43_CH5307 NONE
 CT43_CH5306 NONE
 CT43_CH5305 NONE
 CT43_CH5304 5250618 .. 5250640 -    -7  -5.95286   ACCAAAAATAAAAAA           GGTGAAGATA TTA TCTCCTCACC           CTAGAAATTTTTCAT 100 21
 CT43_CH5303 NONE
 CT43_CH5302 5248179 .. 5248192 -  -3.9  -2.66316   CTCTTCATTATATTA               TAGTA ATAA TACTA                AATATTAAAGTTAAA  46 64
 CT43_CH5301 5247169 .. 5247193 - -17.3  -4.89063   CTATGCAAAAATAAA          CCCAACTCCTT CCA AAGGAGTTGGG          TTATTACATAATTAC 100 37
 CT43_CH5300 5246249 .. 5246270 - -11.7   -5.1244   CCACTAATATAAAAA           GGTATACGA GCGC TCGTATACC            TTTTATATCTTCTTC 100 42
      galE_2 5245157 .. 5245188 - -17.6  -5.76237   TACATAAACAAAAAA      CCTCAAAAAGTAGT TGAA ACTACTTTTTGAGG       TTTAAAAAATTATTA 100 38
 CT43_CH5298 5243056 .. 5243074 -  -8.9  -5.68438   GGAGCAAACAAAAAA             GTAAGGC TTCTC GCCTTAC             CTATTCATATCTTAA 100 26
 CT43_CH5297 NONE
 CT43_CH5296 5239961 .. 5240002 - -11.8  -5.63504   AATCGTACAAAAAAA GAGAGGATATTGTCGAACA TATTT TGT-CGACGATACCCTCTC CTGTTATATTTTCTC 100 41
 CT43_CH5295 NONE
 CT43_CH5294 NONE
 CT43_CH5293 NONE
 CT43_CH5292 NONE
 CT43_CH5291 5234506 .. 5234533 -   -10  -4.66537   TTTTCTAATATAAAA        GCTATCCAATCA CACA CAATTGGATAGC         TTTTTCAAACAAAAT  93 42
 CT43_CH5288 NONE
 CT43_CH5287 NONE
 CT43_CH5286 5230196 .. 5230254 -   -14   -2.7094   TTCTATTTATATAAC CCGTTCTAACGGGCGGTTCACTTCCTC ATGCAA GAGGCTACGAACCGCCCACTAGAAC-G GTAATGTGTAGTTCT 100 55
 CT43_CH5285 5229449 .. 5229471 - -12.8  -5.98675   GATAAAAATAAAAAA           GGTGACTCTC TTG AAGAGTCACC           TTTTTAAAATAATAT 100 42
 CT43_CH5284 5228748 .. 5228792 - -17.6  -3.66018   TCATCACCTTAATAA CAAATAGAATGGAAGGTA GTATTTCCT TACCTTCCATTCTATTTG CTATTTTTATCCTCT 100 32
 CT43_CH5282 5227667 .. 5227696 - -15.2   -5.1417   CTATAAAATGAAAAA       GACGAATCTGCA TCATTT TGCAGATTCGTC        TTTTTTCTTCGGCAT 100 8
 CT43_CH5279 5225453 .. 5225463 -    -4  -5.86061   GGGTACCAAAAAAAA                 GAAA AAA TTTC                 ACGCCAAAACATGAC  86 173
 CT43_CH5278 5224901 .. 5224927 - -15.3  -5.76949   TACCCGCAAAAAAAA         GCGCTAATCTC GAAAT GAGATTAGCGC         TTTTTTCTATTCCAA 100 19
 CT43_CH5275 NONE
 CT43_CH5274 NONE
 CT43_CH5273 5216811 .. 5216837 - -18.2  -5.28176   TTTAGCTACAAAAAA         GAGGCTGTTCAA ATA TTGAACAGCCTC         TTTCATATTAACGAG 100 33
       opuD2 5213119 .. 5213139 -  -9.8  -5.29782   TAGAGGGATAAAAAA            GAGCTGAT ATGAA ATCAGCTC            TTTTCCTTCTATTAT 100 40
 CT43_CH5269 5212481 .. 5212517 - -12.5  -4.22749   AAAGATAAATAATAA    CAATAAGCACAGAGC GCCGTAT GCTCTGTGCTTATTT    ATTGCCGTATAAATT 100 132
 CT43_CH5265 5208535 .. 5208557 -  -4.9  -3.14881   CAATCGCTTCATTAA           GTAACTCTT ATTGG AAGAGCCAC           TTCTTAGGATACACG  53 175
 CT43_CH5263 5206312 .. 5206323 -  -4.4  -3.18274   GGTATTGTAACGGAA                GGAA GTCA TTCC                 AACTTCTTTTTAATT  51 334
 CT43_CH5259 NONE
 CT43_CH5258 5201811 .. 5201837 - -22.4  -4.57837   ACATTTGTTTAAAAA         GGGCCCCTTGCA AAT TGCAAGGGGCCC         TTTTCCTAATTCGTT 100 45
       lldP2 5199276 .. 5199309 - -15.4  -4.83615   CATCTTCCATAAAAA     GAGCCAGGTCCATA AAAAAA TAAGGACCTGGCTC      ATAAAGACATCATTA 100 227
        thiC 5194268 .. 5194309 -   -19  -4.07133   TAGCGGGATAAACAA CAGAAGCCCCATTTGCTA CCGTCT TAGCAAATGGGGCTTCTT  CTATAATAAAGTTAG 100 81
 CT43_CH5250 5189532 .. 5189550 - -10.4  -5.24449   CATAAATTTAAAAAA             GACAATCT ATT AGATTGTC             TCCCGCATTTTTATC 100 36
 CT43_CH5249 5188344 .. 5188393 - -21.9  -3.11281   GGACGTAAAATTATA TGAACAAATAAAAGGTGCCACCCT CAT ATGGTGGCACCTTTTATT-GTTCA CTCTTTTTTAATTCT 100 16
 CT43_CH5247 5185281 .. 5185309 - -16.2  -5.67283   AACGTAAATAAAAAA        GAAGCTATCCGA AAAAA TCGGATAGCTTC        TTTCATTTTAAGAAA 100 33
       celA3 NONE
       celB3 NONE
       celC3 5180135 .. 5180150 -    -9  -5.71712   TTCGAGATAAAAAAA              CCTTGC ATAA GCAAGG               TTCATTCATCCACCG 100 27
       celA2 NONE
       celB2 5176413 .. 5176456 - -18.4  -4.13591   TGAACATGATATAAA GGTGATTGTTCTCACAGACA CCGT TGTCTGTGAGAACAATCTCT ATGTTACATAGGTAC 100 29
       celC2 NONE
        celF 5174604 .. 5174622 -  -6.7  -5.94214   AATAGAATAAAAAAA            GCGG-GCT AAAT AGCGCCGC             TTTTACTTCTCTACC 100 28
 CT43_CH5234 5173831 .. 5173870 -  -5.3  -3.89346   TGTCCATTTTATAAA TAGAAAAAAACG-CGGC ATGATGTA GCCGTCGTTTTTT-CTA  TTAAAACTTCACAAG  61 26
 CT43_CH5232 5172010 .. 5172043 - -13.4  -2.89298   CACCTTATATAATGA     GAAAAGGCTGTTCCA ACATA TGGA-CAGCCTTTTC     CTCTACTTCTTTACT 100 28
         ugd 5165092 .. 5165105 -  -6.7  -3.07568   GACATATAAAAATAT               GGATG AGTA CATCC                CTTTTTAACGCATAA  62 30
 CT43_CH5227 5163889 .. 5163911 - -13.5  -5.07486   CAGCCGTAACAAAAA           GGCCCAATC TATCC GATTGGGCC           TTTTTTATTTACTTA 100 34
 CT43_CH5224 5160928 .. 5160944 -  -7.3  -5.42862   ATACCCGTAAAAAAA              CCCTCTT AAA AAGAGAG              CTTTTTATATCTTTA 100 41
 CT43_CH5223 5160424 .. 5160441 -  -9.9  -5.85425   TAAACAAAGAAAAAA             CGTAAGG AATC CCTTACG              TTTTATTAAATATAC 100 57
 CT43_CH5222 5158830 .. 5158865 -   -10  -5.30575   TAAAAACTCAAAAAA    GTCGATAACCTACTTAT AAA AT-AGTAAGCTATCGAC    TTTATACACGTTTTT 100 57
       comFA 5157295 .. 5157315 -  -3.3  -2.79505   ACACTCCATGCAAAT            TTCTCCTAT AAT ATAGGAAAG            TTTCTGCTCACATCT  45 130
       comFC 5156621 .. 5156632 -  -7.2  -3.25166   TCACTCTAAAAATCA                GGGC ATTC GCCC                 CATATTTTGACTATA  66 109
        cspC 5156310 .. 5156330 -  -5.4  -5.55769   CCCTATAACAAAAAA            CCCCTTGC GAAAA ACAAGAGG            TTCTACTACATATAT  87 87
        yfiA 5155495 .. 5155515 - -14.7  -5.52384   TTTTCAGCAAAAAAA            GCGCAGCCA TTT CGGCTGCGC            TTTTGAATTATTATT 100 36
       secA2 5152652 .. 5152676 -  -8.6  -3.92716   TGAAAACAAGGGAAA          CTCTCTCCAC TTATT ACGGAGAGAG          TTTAATTCTTCTTAA  79 94
        cccB 5150700 .. 5150723 -  -7.6  -4.82678   CCAGAAAAAGGAAAA          CGAGTTGACTA TAT TA-TCAACTCG          TCCATTTCACCTTTT  87 41
        ftsE 5149753 .. 5149777 -  -3.5  -3.53563   ACACCTTCTCGCAAA          TGTCGACTAAG GGT CTTAGCCTTCA          TATCCGTATCCTCCC  50 16
        ftsX 5148810 .. 5148832 - -16.4  -4.25104   GGTGGTGTAGCAAAA           GGCATCACAC AGT GTGTGATGCC           TTTACCTATTTCTAC 100 78
 CT43_CH5211 5147301 .. 5147322 - -13.1  -5.80817   TTTAACACAAAAAAA           TACAGGCAG CAAA CTGCCTGTA            TTTCTTCTTATTTTG 100 33
 CT43_CH5210 5146004 .. 5146025 - -10.9  -6.12458   CAAAAAAACAAAAAA           GGTACCACC ACAA GGTGATACC            ATTCCTTCTATTACA 100 36
 CT43_CH5209 NONE
 CT43_CH5208 5143488 .. 5143527 - -20.4  -2.90714   TGAAACTTCGACATA  TAAAGTAAAAAGCCATGC ATCA GCACGGCTTTTTACTTTA   TCCCGCATTAACGGG 100 172
 CT43_CH5204 5139981 .. 5140014 - -15.5  -4.41137   CATAAGCATAAGAAA     GAAGCTGCCCCAAAA TATC TTTTGGAACAGCTTC      TTCGTCCTACTTATA 100 36
 CT43_CH5203 NONE
 CT43_CH5202 5139118 .. 5139161 - -13.6  -5.75342   GTTTTGTAAAAAAAA TACA-AAAAGCTGTTTATACA AAG TGTATAAACAGCTTTTATGGA AATAACCCCTTTTGT 100 19
 CT43_CH5201 NONE
 CT43_CH5200 5137665 .. 5137688 - -12.6   -4.2349   TTTGTATACCCAAAA          GCTACTTTCA ACTA TGAAAGTAGC           TTTTCTTTTCCTTTC 100 13
 CT43_CH5199 5137167 .. 5137189 -  -7.1  -5.08178   ATACACATAGAAAAA          GGAAGG-AGT AAAT ACTTCCTTCC           TCTACTAATTCTATT  88 36
        uvrB NONE
        uvrA 5132154 .. 5132174 -  -6.1  -5.24796   CCTATACAATAAAAA            CCGAGCG TCATTTC CACTCGG            TTTTCATCAATAAAC  84 41
 CT43_CH5196 5131630 .. 5131649 -  -4.4  -2.84417   TAATAAACGCAAGTA            TGATACAA ACAC TTATATCA             ACTTATTCTATCTTT  49 57
 CT43_CH5195 5131150 .. 5131172 -    -5  -5.90231   ATAAATAGAAAAAAA           CATTTCAT ACGAATA ATGAAATG           TTTTTCTTTTTGTCA  90 38
        hprK NONE
         lgT 5129231 .. 5129255 - -12.3  -4.08853   CTGAATATGAAAGAA          GCAGCATCTTA TAA TAAGATGCTAC          TTTTCTCTAATTTTC 100 32
 CT43_CH5192 NONE
 CT43_CH5191 5127938 .. 5127948 -    -4  -4.32882   GTAAAAAACAAAACA                 GTAT ATT ATAC                 TCAATTATTTCCTTT  60 75
 CT43_CH5190 NONE
        trxB 5125257 .. 5125285 - -11.2  -5.71712   TTTCACACAAAAAAA       GAAGAAAGCT-CC TGTC GGTAGCTTTCTTC        TCACAAGGTATGTTA 100 45
 CT43_CH5188 5124294 .. 5124323 - -13.7   -4.8083   GAATAGCATGAAAAA       TCCCCTTAACGAT TTTT ATCGCCAAGGGGA        TTAAAGCCCTTATTT 100 35
 CT43_CH5187 NONE
 CT43_CH5186 NONE
 CT43_CH5185 5121752 .. 5121768 -  -6.5  -3.25823   CTTGTCCTATATGAA              TGAGGAG CGC CACCTCA              AACGAGGCAACGCAC  61 43
 CT43_CH5184 NONE
       ptsH2 5120451 .. 5120470 -  -8.6  -6.17669   AACAAAACAAAAAAA            CTATCGCA TATA CGCGATAG             CTCTTTATTGTACAT 100 30
 CT43_CH5172 NONE
 CT43_CH5171 5111949 .. 5111991 - -12.3  -5.46706   ATTCCAAAATAAAAA GAGCAGTTTAGGTATAGTGA CACT TCACTATGCCT-AACTACTC TTTTACGATTCTTAA 100 41
        sigL NONE
 CT43_CH5169 5110103 .. 5110128 -  -2.6  -2.67047   GTTAAAAAAATAATC         CCTGCTAC GTGTATTATT GTAACAGG          AGATAGAAACTTATT  40 40
        cggR 5108983 .. 5108993 -  -6.8  -3.86202   GGGGATTATATTAAA                 GGGT AAA ACCC                 TTTGTTAACTGTTTT  69 10
        gap2 5107887 .. 5107914 - -13.5  -4.21465   TTTAAAACGAAAGAA        GAGAGAGAGGG AACAAA CCCTCTCCCTC         GTTTTGTCATTGATA 100 58
         pgk NONE
        tpiA NONE
        gpmI 5104309 .. 5104319 -  -2.6  -4.04174   TTTTATATAAGCAAA                 TTAT TTA ATAA                 TTGTTTTACCTGTCA  53 15
         eno 5102942 .. 5102965 - -15.4  -5.80817   TTTAACATAAAAAAA          CAGACCGTGA TTTC TCACGGTCTG           TCGTTTATTTTCTAC 100 43
 CT43_CH5161 NONE
 CT43_CH5160 5100540 .. 5100564 -  -7.8  -4.55721   AAATCCTATAGAAAA          GCGAGAGCTA TAGAG TTGCCCTCGC          TTTTCTTCTATTACA  82 36
        secG 5100204 .. 5100238 -  -9.5  -5.79595   TGGCAAAACAAAAAA     GAAGAACCATTAGTA CATCT TACTAACGCTTCTTC     TTTCAATTCTATAAG 100 34
        estA 5099332 .. 5099364 -  -7.8  -5.52384   TCCTTATGAAAAAAA      GAGGCAACTAGATC TTACC AATCTAGTTGCTCC      AAGAAGTTATATACA 100 7
        vacB 5096722 .. 5096750 -  -9.6  -5.55001   GAAGAAAAAAGAAAA        CGGCCCCGCTTT TCATC AAAGCGAAGCCA        CTCTTTTCTTACTTA 100 34
        smpB 5095669 .. 5095689 -  -6.9  -6.14618   TACAAAATAAAAAAA            CCACCAA ATATGTA TTGGTGG            AGACGGTGGGAGTCG 100 501
 CT43_CH5154 NONE
 CT43_CH5153 NONE
 CT43_CH5152 NONE
 CT43_CH5151 NONE
 CT43_CH5150 5089096 .. 5089124 - -13.3  -5.75478   AATCACATAAAAAAA        GCTGCTGCCTATA AAA TATAGACAGCAAC        TTCAACTAGAGTAGC 100 70
         alo 5087162 .. 5087183 -  -8.1  -5.60993   TTCCCTATAAAAAAA           CACTTCTTC CGTG GAAAAAGTG            TTTTTTTATACTTAA 100 37
 CT43_CH5148 NONE
 CT43_CH5147 5086227 .. 5086261 - -14.5  -2.67289   ATTCGAAACATGAAT     TAGTATACGCTGACC GTTTT GTTCAGCGTATACTA     TTTTTTACATTGAAT 100 46
 CT43_CH5145 5084412 .. 5084436 -  -8.7  -5.21709   TTCCATATGAAAAAA          GAAAGGATAAG TAT CTTATTCTTTC          TTTTTTTCCATTGTC  95 16
 CT43_CH5143 5082195 .. 5082221 -  -3.9  -2.56806   ACCAATTTATAAGAC         GTATACTCTTT TGACG AAAAAATATAC         TGCACAAACGTGATC  45 200
 CT43_CH5142 5081917 .. 5081942 - -12.7  -5.27779   GTCAAGATGAAAAAA         GTAGTGCAAAC TTAC GTCTGCACTAC          TACTCTTTTCTCAAA 100 25
        speG 5081247 .. 5081272 -  -9.9  -5.34555   TCACATCACAAAAAA         GCTACAGATAA TATT TTATCTATAGC          TCTTCCAATCGGTTA 100 38
 CT43_CH5140 5080824 .. 5080844 -  -6.9  -3.54183   TTCCATTATAAAAAT            GATGATTCA TCA TGATTCATC            TCACTTATTCTTTTT  65 97
 CT43_CH5139 5080573 .. 5080590 - -11.3  -5.80817   TGGAATATAAAAAAA             GCGACTC TATT GAGTCGC              TTTCTTTCATAAGAA 100 32
 CT43_CH5136 5078044 .. 5078066 -   -10  -3.40134   AAAGCATGCCAAATA           CATGTTTTCA ATT CGAAAACATG           AAAAAGAAAATGCTC  84 80
 CT43_CH5135 5076730 .. 5076741 -  -2.2  -2.71011   AGTCCTCTTTAACCA                CTCC ATAT GAAG                 CCCCACCTTCTACTT  40 52
 CT43_CH5134 5075201 .. 5075219 -  -8.9  -5.27477   ATTTCAATGAAAAAA             GAGCACA TCATT TGTGCTC             TTTCCAAGCAATATT  95 39
 CT43_CH5133 5074590 .. 5074609 -  -8.6  -5.85737   ACATCAATAAAAAAA            GCACATCC GACA GAATGTGC             TCTTTCTATACTCTT 100 45
       murB2 5072998 .. 5073026 - -16.9  -5.93252   TTTAAAAACAAAAAA        GCCCCTATGTCTA CGA TAGACATAGGGAC        GATTATTCACCGTGT 100 329
        tyrS 5071518 .. 5071546 - -17.5  -3.69069   CTAATCTGAATATAA        GCCCGAATCATGC CCT GCATGGTTCGGGC        TATTTTTTATCCGTA 100 181
 CT43_CH5127 NONE
 CT43_CH5126 5066630 .. 5066647 -  -4.8  -5.81412   TTTATGCAAAAAAAA             GAGCGC ATAAAA GCACTC              TTTTTTCTTTCTTAC  90 48
 CT43_CH5125 5065600 .. 5065639 - -13.8  -2.71101   TCTTTAAAGAATCCA  TATAGAAAAAGCATTGGC ACAC GCCAATGCTTTTTCATTA   TCTTTTTTGATTCGG 100 23
 CT43_CH5124 5060605 .. 5060632 - -12.9  -5.64873   CTGAATAATAAAAAA        GCTCGTAAAAC CATTAT GTTTTACGAGC         TTTTTCTTATTATTG 100 35
 CT43_CH5122 5058190 .. 5058220 - -17.7  -5.58179   TACTACAACAAAAAA       GGCGAGCATCGAA TTCAC CTCGATGCTCGCC       TTTTCATTTACACTG 100 33
 CT43_CH5121 5056420 .. 5056446 - -16.8   -5.5604   TGAACCAACAAAAAA         TGAGCATCAAGT TTC ACTTGATGCTCA         CCTCATTATACTGCT 100 31
 CT43_CH5120 NONE
 CT43_CH5119 5054905 .. 5054935 - -20.6  -5.67063   TTTACCATAAAAAAA       GGATGGCCCTAGCT ATG AGCTAGAGCCATCC       TTTTTTTATAACATA 100 31
 CT43_CH5118 5053368 .. 5053389 - -13.1  -5.67283   AAGTTAAACAAAAAA           GCAATGAGC CTAC GCTCATTGC            TTTTCTTAATTTATT 100 39
 CT43_CH5114 5050461 .. 5050491 - -10.6  -5.04222   TAACCAAATTAAAAA       CACATGCCATCTTA AAT TAAAACGACATGTG       TTTCCGTATTTGCTA 100 38
 CT43_CH5113 5050087 .. 5050112 - -10.5   -4.2331   AATCAAAATGATAAA         GGCATTCCAAA GTAA TATGGAATGCC          TCTTTTATTGCCTTC  95 30
 CT43_CH5112 5049067 .. 5049111 -  -6.1  -5.70761   AAAACAAAATAAAAA TAACAATAAAGGCATTCC GAAATAATAT GGAATGCCTTTATT-CTA TATTACATAATTAAA  93 113
 CT43_CH5108 NONE
 CT43_CH5107 5044159 .. 5044192 -    -7  -4.91109   TTTTCATTACAAAAA     TAAAAGTACAAG CAGGAAATAT CTTGTACTTTTA      TTTTTTTCAATTTAG  83 37
 CT43_CH5106 5043497 .. 5043520 - -10.4   -5.4756   AATGCCAATAAAAAA          GGAATCTACG TCGA CATAGATTCC           TTTTCTGTAATCACT 100 36
 CT43_CH5105 5042909 .. 5042927 -  -7.6  -3.99986   TTAATAAAAGTCAAA             TACTTATT TTT AATAAGTA             TAAAAGCACAGCGCT  77 57
 CT43_CH5104 5042407 .. 5042420 -  -6.7  -2.63596   CTTCACCTCATACTA               TCTCG AATT CGAGA                TTTATTTTAAAATTT  59 45
 CT43_CH5103 5041652 .. 5041674 - -12.1  -5.63103   TTCCAATCAAAAAAA           GAGGACATC TATCG GATGTCCTC           TTTTTTATAAACCTT 100 41
 CT43_CH5102 5039853 .. 5039870 -    -7  -6.28967   GATAAAGAAAAAAAA             CCTGAC ACTCTA GTCAGG              TTTTTTTCTCTTATT 100 39
 CT43_CH5098 5033678 .. 5033736 - -12.7  -2.95316   TCTATATACAATAAT TGCGACAGCATGCAAAAAAGGATCCCTTC ACG GATAGGATCC-TTTTTGCATGCTCACGC- ATATAAGTTGAGGTT 100 254
 CT43_CH5096 5030790 .. 5030813 -  -9.7  -4.78237   TACTGCATAACAAAA          GACCTTTCA TTTACT TGAAAGGTC           TTTTTCTATATTTCA 100 38
 CT43_CH5089 5024964 .. 5024983 - -13.6  -5.92399   CAATAAAATAAAAAA            GGCAGTGC TTTT GCACTGCC             TTCCTAAATTCTGAC 100 58
 CT43_CH5088 NONE
 CT43_CH5087 NONE
 CT43_CH5086 5022763 .. 5022793 -  -9.1  -5.43414   ATGACATATAAAAAA       GAGGATACCTCAC CCATC GTAAGATACCCTC       TCTTTCAGCTGCTTA 100 4
 CT43_CH5085 5022349 .. 5022371 -  -8.5  -4.93296   GCATCACGATAAAAA           GAAGTTACC CTCAC GGCAACTTC           TTTTCCACATACCCC  93 189
 CT43_CH5083 5020827 .. 5020864 - -14.5  -4.21141   GGTTAATAAATTAAA   GGGCATAACATATTA GTCATATA TAATATGTTATGCCC    TTTGTTATTCAACTC 100 79
 CT43_CH5081 NONE
    spoIIIJ1 5018507 .. 5018543 - -13.2  -3.13164   TCCTTAACGACTTAA    CAAAAAAACACCGCTC GTAAT GAGCGGTGTTTCTCTA    TGCTTTTTGTAATTG 100 23
 CT43_CH5079 NONE
 CT43_CH5078 5018019 .. 5018030 -  -2.2  -3.79668   ATCTAAGTTAGCAAA                CATG TCTC CACG                 CTTTACCTTTCTCAG  50 6
 CT43_CH5077 5017665 .. 5017694 - -15.9  -3.15027   ATGCCTCATTAAAAG       GGACCGATTTCTA CTTA TAGAAATCGGCCC        TTGCACGTACCTTCC 100 74
 CT43_CH5076 5015628 .. 5015650 - -16.4  -5.21709   TTTTACAGTAAAAAA           GGTAGGCGTA TTA TACGCCTACC           CTTCCATCATTCTGT 100 32
 CT43_CH5075 5014358 .. 5014379 -  -8.1  -5.72622   TTTACAAATAAAAAA           GAACCTATC AAAC GATAGATTC            TTCTTTCACGAACTG 100 11
 CT43_CH5073 NONE
 CT43_CH5072 5010728 .. 5010744 - -12.3  -5.21709   TCCTATATGAAAAAA              GCAGCGA AAA TCGCTGC              TTTTTCTTATAATTT 100 32
 CT43_CH5071 5010424 .. 5010456 - -17.3   -4.3078   AAGGATATTAATAAA      GAAAACTTGAGGTAA CAT TCACCTCAAGTTTTC      TCACTGCTCATTTCG 100 26
 CT43_CH5070 5009203 .. 5009230 - -12.9  -4.45544   TTTCAGCAATTAAAA        TAACCAAGGAG TATTTT CTCCTTGGTTA         TTTTTTAACCATACC 100 23
 CT43_CH5067 NONE
 CT43_CH5066 NONE
 CT43_CH5065 5002341 .. 5002370 - -15.9  -5.75342   TTTTTTCAAAAAAAA       GAACAGTAGCCGT ATAA ACGACTACTGTTC        TTTAAAGATATTAAA 100 36
 CT43_CH5064 NONE
 CT43_CH5063 5000952 .. 5000971 -  -9.4  -5.17353   ATATGCACTAAAAAA            CCTTAGAA TCAC TTCTAAGG             TTTTTGTTTGCCTCG 100 45
 CT43_CH5061 4999759 .. 4999791 - -15.9  -5.07523   CACATATAAACAAAA      TAAAAGATGAATAGC TAG GCCATTCATCTTTTA      TGCTAAATATTCATT 100 46
 CT43_CH5060 NONE
 CT43_CH5059 4999181 .. 4999212 -  -8.1  -5.76633   TGACATACAAAAAAA      TAAAACGAGCGAA TCTATT TTCGCCCGTTTTT       TCATCCAATTATTCT 100 34
         ldh 4997833 .. 4997844 -  -5.8  -3.22223   CAATTCCAGCACCAA                TGGC TGGT GCCA                 TAAGTGATTTTGCAA  59 205
 CT43_CH5055 4995582 .. 4995608 -    -3  -5.71712   TTCTACATAAAAAAA         TAAGAAGCCT CGTTTAC AGGCTCCTTC         ATCATCGACTTAAGT  81 27
 CT43_CH5054 4995320 .. 4995333 -  -6.7  -3.05963   ATCTTTACTTCAACA               CCTGT ACCC ACAGG                ACTAGCTCCAGGCCC  62 73
 CT43_CH5053 4994808 .. 4994822 -  -3.6  -5.47218   TTCCATTCAAAAAAA               CTATAG CAT CTATAA               TATTATTTTAACTCT  76 41
 CT43_CH5052 4994171 .. 4994210 -   -14  -4.21322   TCAATAGAAATTAAA  GTGAATTATATTTCTTTA CTTT TAAAGGAATATAATTCAC   ATATAAATCTATAGC 100 183
 CT43_CH5051 NONE
 CT43_CH5050 4993197 .. 4993209 -  -3.4   -4.7078   TTAATTATGTAAAAA                TACC TTATT GGTA                CTTTTTCCACACACT  63 17
        gcvH 4992741 .. 4992760 -  -9.3   -5.8901   ACACAAAATAAAAAA            GGACAGC ACAAAG GCTGTCC             TTTAGTCGACTATAA 100 41
 CT43_CH5048 NONE
 CT43_CH5047 4991724 .. 4991752 -  -7.6  -2.80244   TTTCCCAAGAAATAT       GTCGAGGCGGCAAA AAT TTTGCCGCCT--AC       TTTAATTCCGTATAT  66 22
 CT43_CH5046 4990960 .. 4990986 - -13.9  -6.01369   CAAACAATAAAAAAA         CCTTTCTGCTT TAGAG AAGCAGAAAGG         TTTATATGCGTATAT 100 291
 CT43_CH5045 NONE
 CT43_CH5044 NONE
 CT43_CH5043 4988290 .. 4988310 -  -6.8   -4.7497   TGTAGTTATGAAAAA            GAGCTGGC ATCAG ACCAGCCC            TTTTCAGCAATTATT  83 36
 CT43_CH5042 4987409 .. 4987429 -  -9.7  -5.76237   TATATAAAGAAAAAA            GGACTGGTA ATT TCCCAGTCC            TTTCCTTATATTTAT 100 37
        sufC NONE
        sufD NONE
        sufS NONE
        sufA NONE
        sufB 4981987 .. 4982007 - -18.3  -5.79595   CCGCAAAACAAAAAA            GCGCCCTGC ACA GCAGGGCGC            TTCTACTTTATCTAT 100 40
 CT43_CH5036 NONE
 CT43_CH5035 4979686 .. 4979720 -    -8  -5.65177   ATACTCATAAAAAAA     CCTCCTTCTTATAT CATTTCT ATGCAAGAAGGAGG     GACGATATATGCTTA 100 38
 CT43_CH5034 4978869 .. 4978898 -  -9.4  -5.22289   GAGCAAATACAAAAA       GATAACCGTAGC TGCATT GCTACGGTTATT        TTTTATCCAGTAAAA 100 74
        lipA 4976775 .. 4976795 -  -8.3  -5.40464   GAGTACAAACAAAAA            GAGAGCTGA TCG TTAGCTCTC            TTTTTTCATTATTTA 100 34
 CT43_CH5029 4975089 .. 4975112 - -12.6  -5.15634   TACCGGAGTAAAAAA          TAAACCACCA AAAT TGGTGGTTTA           TTTTTTATATGGATG 100 23
 CT43_CH5027 4973397 .. 4973431 -   -21   -4.8083   TAATATGATTAAAAA     GTAAAACAGGTGGAGA GAA CCTCCACCTGTTTTAC     TTTTATTTTTTATTA 100 28
 CT43_CH5025 4972368 .. 4972389 - -11.7  -5.14965   ACTGCTATGAAAAAA           TCCTCTTAC AATC GTAAGAGGA            TTTTTTTACTTCTTC 100 31
 CT43_CH5020 4969093 .. 4969130 -   -13  -3.58726   CTTTCTCACATACAA   TATAAGATCCCCAAAA GGTATT CTCTGGGGATCTTATA    AGCATAATTATTCTG 100 33
 CT43_CH5019 4968397 .. 4968413 -  -9.5  -5.95539   TTCCAAAGAAAAAAA              CGCTTTA CCT TAAAGCG              CCCCATAACGTTCAT 100 37
 CT43_CH5018 4967509 .. 4967557 - -19.3  -3.38768   CGACACTAGTCACAA CGAAATAAAAAAAGCTGTTCCAA AGT TTGGAACAGCTTTTTTCATTACA TCTTCTCAATCCACT 100 21
 CT43_CH5012 NONE
        cotS 4959232 .. 4959251 - -12.2  -4.08064   AATCGCCTTCTAAAA            GGAGACCA AATT TGGTCTCC             TTTTTTTATTCAAAT 100 438
 CT43_CH5007 4958297 .. 4958318 -  -7.3   -5.7946   CCTCCAATAAAAAAA           GCCTTTGCA AATT CGCAAAGAC            TTCTTGTTTTATAAA 100 34
 CT43_CH5006 4957445 .. 4957468 -  -8.3  -5.80817   TTCAACATAAAAAAA          GACAATACA CCCCAC TGTATTGTC           CATTTTCTTCCCTAC 100 37
 CT43_CH5005 4956678 .. 4956700 - -12.8  -4.10958   CTACAAAATACGAAA           GACGCCCTTT TCA AAAAGGCGTC           TTTTTATAGTTGAAA 100 29
 CT43_CH5004 4955534 .. 4955556 -   -10  -5.09762   CCCTAATAAATAAAA           GAAGAACCTT CAC AAGATTCTTC           TTTTCAAAATGAACG 100 49
 CT43_CH5003 4955115 .. 4955126 -  -4.4  -2.66257   GTAAAAATCAAAATT                GATG TTTA CATC                 TCGATAAATAAAATT  48 128
        phnA 4954681 .. 4954731 - -14.3  -4.88067   ATTTACCGACAAAAA GTGACATAATAAAAAGAGGAGGC TATTC GCCTCCTCTTTTTATTGTCTTAC GCCTTCTTAACGAAC 100 22
 CT43_CH4997 4950813 .. 4950829 -  -8.7   -5.4505   TTGTGTAAGAAAAAA              GCCCTTC TAA AAAGGGC              CTTTTTTTATTTATC 100 117
        dapF NONE
 CT43_CH4995 4949353 .. 4949390 -  -7.9  -5.09259   TACGGCAAAAGAAAA   GACCTCCTTAACGAT TTTATTCC ATCGCTAAAAAGGTC    TTTTTCTATTTCGGC  89 48
 CT43_CH4993 NONE
 CT43_CH4992 4946450 .. 4946463 -  -3.9  -3.22516   AACATGACATGAACA               TTACA CTTT TGTAA                GATAATAATTATTTC  49 34
 CT43_CH4991 4945614 .. 4945633 -  -6.4  -5.65177   AGAGGTATAAAAAAA            GATGCTGC ACTA ACAGCACC             AGTTAAAAATGATTA  93 404
 CT43_CH4989 4943638 .. 4943660 -  -4.8  -2.62515   AACGGTTCGAGAGGA           GGTGTGAGAG TCC CTCTCAAACA           CGCTTCTATGGGTCT  50 31
 CT43_CH4988 NONE
 CT43_CH4987 4942077 .. 4942098 - -12.3  -3.91197   CTAGAAAGCACGAAA           GACGTCGCC ATTT GGCAACGTC            TCCCATTTATTCCTA 100 47
 CT43_CH4986 4941851 .. 4941880 -  -9.4  -5.64274   TGATCTATAAAAAAA       GAACTTGGCAGA TTAACT TCCACCAAGTTC        TTTTTTTATTTTGAT 100 8
 CT43_CH4984 4939589 .. 4939603 -  -7.2  -3.79162   TTGACAGAAAACGAA               TTTGCT TAT AGCAAA               GTTTTTGTTTGTCTT  72 339
 CT43_CH4983 NONE
 CT43_CH4982 NONE
 CT43_CH4981 NONE
 CT43_CH4980 NONE
 CT43_CH4979 4937053 .. 4937070 - -11.3   -3.1247   ACCTCTTATATTTAA             GGGGCAT AATC ATGCCCC              TCTTTTCATAAACTG  87 119
 CT43_CH4978 NONE
        dnaI NONE
 CT43_CH4976 NONE
        sigF NONE
 CT43_CH4974 4933782 .. 4933799 -  -4.1  -4.09243   TACACTCTTTCAAAA             CGGAG CTTTACCC CTCCG              AACTGTTTAGGCACT  58 141
 CT43_CH4973 NONE
 CT43_CH4972 4933072 .. 4933083 -  -2.2  -2.85574   CGAATCTTATTAAAC                GCTA TTTA CAGC                 CTGAATGAGCGGTTT  41 111
 CT43_CH4971 4932395 .. 4932417 -  -7.7  -5.63517   TTCCTAAATAAAAAA           GAGCAACCG TGCAC CAGTTGCCC           TTTCATCAATTCTTT 100 104
 CT43_CH4970 4931961 .. 4931989 - -11.2  -3.29461   TAATTTTTTGCATAA        TAAAAAGCACCC GTTTT GGATGCTTTTTA        TAGTTTGAATTTTTC  85 23
 CT43_CH4969 4931711 .. 4931723 -  -3.4  -2.72144   CCATCCTTTTTAAAT                GCAA CACGT TTGC                GCTTATCTTTACCTA  44 34
 CT43_CH4968 NONE
 CT43_CH4967 4930950 .. 4930968 -  -3.8  -4.36903   CCTACCAAAGACAAA             CTGTCCAC ATC GTTGACAA             CATCCCTTCTCTCTT  62 213
 CT43_CH4966 NONE
 CT43_CH4965 NONE
 CT43_CH4964 4926965 .. 4926982 -  -2.7  -4.89521   AGATTTTAAAGAAAA             TTTTGAG TTTG CTCACAA              AACGTTAGCGTTTAT  68 393
 CT43_CH4962 NONE
 CT43_CH4961 4924970 .. 4924983 -  -2.3  -3.28684   AATCATCCATATTAA               GCCCC AGTA GAAGC                TTTTAAAACATACTT  44 8
 CT43_CH4960 NONE
 CT43_CH4959 NONE
 CT43_CH4958 NONE
 CT43_CH4957 NONE
 CT43_CH4956 NONE
 CT43_CH4955 4922604 .. 4922626 - -10.6  -5.71295   ACATAAAAATAAAAA           TCCCAGTCCA ATT CGGACTGAGA           TTCCTCGTTTTTAGT 100 52
 CT43_CH4954 NONE
 CT43_CH4953 NONE
 CT43_CH4952 NONE
 CT43_CH4951 4914774 .. 4914789 -  -4.6   -5.8901   ATACAAAATAAAAAA              GCCTGC TTAT GCACGC               TTAATCTGTAATAGC  87 40
 CT43_CH4950 4914384 .. 4914401 -  -7.7  -5.80817   TTCAAGATAAAAAAA             GAGAGAC ACTT GTCCCTC              TTTCACAAATACTTA 100 53
 CT43_CH4949 NONE
 CT43_CH4948 4913006 .. 4913032 - -12.4  -3.07113   TAGCATCCTATGTAA         TCAGAGCACTCC ACA AGAGTACTCTGA         TTTTTATTGTTCATA  90 220
 CT43_CH4943 NONE
 CT43_CH4942 4910546 .. 4910556 -  -5.4  -2.87132   TTTCTCCTTTAGATA                 TCCT ATA AGGA                 TATCATTGCACTTTG  53 110
 CT43_CH4941 NONE
 CT43_CH4940 4908597 .. 4908613 -  -7.3  -2.63149   TAAATCATACAACAG              GCCAAAC GGC GTTTGAC              AAAGAACAAGAACTA  60 194
 CT43_CH4937 4906066 .. 4906077 -  -2.2  -3.28119   ATGCATTCACATCAA                TCGC ACTT GCAA                 TGGGAATTCCAATCG  43 147
 CT43_CH4932 4890773 .. 4890799 - -16.7  -5.90981   TTATATGAAAAAAAA         GCAGAAACGGC GCTTA GCCGTTTCTGC         TTTTTCTACTATATA 100 41
 CT43_CH4931 NONE
 CT43_CH4930 4889654 .. 4889678 - -14.5   -5.1615   GGAATATGCAAAAAA          TAATCTCCAAC TTA GTTGGAGATTA          AAACATTTGATATCC 100 23
 CT43_CH4929 4888942 .. 4888964 -  -7.1  -5.83226   AAGCCAAGAAAAAAA          GTCTAG-CGT AATT ACGACTAGAC           TATCTTTGCTTTAAA 100 25
        pepA 4887294 .. 4887319 - -14.1  -5.54885   AATACCAATAAAAAA         GGCTGCCTCAA AAAT TTGAGACAGCC          TTTTCTTCAAAAAAT 100 40
 CT43_CH4927 4886224 .. 4886247 -  -8.3  -5.64421   ATTCCAAATAAAAAA          CGTTTAAGA CACTCC TCTTAAACG           TTTTAACAAACCCGA 100 50
 CT43_CH4926 NONE
 CT43_CH4925 NONE
 CT43_CH4924 4884063 .. 4884108 - -14.5  -2.80512   ATTTTTAAGAAATAG TAA-AAAAGGGTACTTTAGAAA TCC TATCTAAAGTACCCTTTTATTA AAAATCTATTTTATT 100 39
 CT43_CH4922 4881182 .. 4881207 -   -12  -4.52857   ATTTCCTACATAAAA         CAAAAGGGAG ATTTCG CTCCCTTTTG          TTCCTTACTACTTAA 100 53
        gtaB 4880202 .. 4880229 - -15.8  -5.55769   TTTCATAATAAAAAA        GAGTTATTGCAG CTTG CTGCAATAACTC         TTTTTTTATATTAAG 100 36
 CT43_CH4918 4878301 .. 4878323 -  -9.9  -5.24416   TAATTATAAGAAAAA          GAGGCTGCTC ATAA GAGC-GCCTC           TTTTTTACTTTTCAC 100 30
 CT43_CH4915 4875196 .. 4875220 -  -8.5   -4.7497   CTTATGTAGTAAAAA          GAGCGCTCTGA TAA TCAGGGCGCTT          TTTTACTTATATCTA  93 73
        kapD 4872920 .. 4872950 - -13.5  -5.42198   CTTTAAAAAACAAAA       CGACCAAATTACA TAATG TGCAATTTGGTCG       TTACTGTGTGCTCAC 100 26
 CT43_CH4911 4872104 .. 4872114 -  -2.4  -5.57054   AACAACTGAAAAAAA                 GCCG TTT CGTC                 ATTCCATTCCCTCCA  75 96
        sodC 4871558 .. 4871574 -  -8.7  -5.74122   TACTACACAAAAAAA              GCTACCA GCA CGGTAGC              TTTTACTTTTTCTTC 100 28
 CT43_CH4908 4869877 .. 4869899 - -15.6   -5.5208   GGATAATATAAAAAA           GGCCGTCGGA AAT TCCGACAGCC           TATAATGAACAGCTT 100 25
 CT43_CH4905 NONE
 CT43_CH4904 4865839 .. 4865853 -  -4.4  -3.07629   AGAGCAAAGCAGATA               TATTTA TTT TAAATA               TCCGATTGGTTAGTA  50 206
        yugI 4865404 .. 4865439 - -19.3  -4.29907   ATATCATAAGATAAA    GTAAAAGAGGAACGC TCATAT GCGTTCCTCTTTTAC     TTTGTTAACTCGGAC 100 22
         pgi 4863432 .. 4863468 - -24.1   -4.3739   GACTTTTCGATAAAA    TAATAAAAAGCGACCGG AAT CCGGTCGCTTTTTATTA    TTTTAAACGCTCTTC 100 23
 CT43_CH4900 4862587 .. 4862597 -  -3.2  -4.19506   ATTTTAACTGCAAAA                 GGAC TCA ATCC                 AAACATTCACTGCAT  59 373
         ldh 4852711 .. 4852737 - -15.3  -4.30987   ATGCGGGATAATAAA         GAGCACTCTAC GTAAA GTAGAGTGCTC         TTTTCTATAAACGAC 100 163
        glgB NONE
        glgC NONE
        glgD 4843123 .. 4843142 -  -7.1  -2.78738   TTAAAACTTTAATCA            GTGGAGG AAAAAG CCCCCAC             TGATTCTTTAGGAAT  62 33
        glgA NONE
        glgP 4839082 .. 4839122 - -19.5   -4.4078   CTTTCTTAAGCAAAA  TAAATAAAACGAGCTTAAT TTT ATTAAGCCCGTTTTATTTA  TTAATATCCATTTTT 100 82
 CT43_CH4887 4837167 .. 4837195 - -11.8  -5.36314   GAAAAGAGTAAAAAA        TGCCTCCAATGC AAAAA ACATCGGAGGCA        TTTCTCTAAAGTTTA 100 60
        cspD 4835275 .. 4835295 - -14.1  -6.25741   AAAGAATAAAAAAAA            GCATTCCGA AAA TCGGAATGC            TTTTTATCGCTAGCT 100 43
        menF NONE
        menD NONE
 CT43_CH4879 NONE
        menB 4828311 .. 4828335 - -14.5  -4.49556   CTTTCATGAAAGAAA          GAGACTTGATA TGA TATCAAGTCTC          TTAGTTGTTTTGTTT 100 128
        menE NONE
 CT43_CH4876 4825608 .. 4825627 -    -5   -5.1523   TGTACAATACAAAAA            GGCTACTC GTTA AAGTAACC             TTTGTAAATAAAATT  79 130
 CT43_CH4875 NONE
 CT43_CH4874 NONE
 CT43_CH4873 4822763 .. 4822784 - -10.1  -4.84311   TCTTATATAAGAAAA           GGCTGTCCC AAAT GGCACAGCC            TTTTTCTCTATTCCT 100 33
 CT43_CH4872 NONE
 CT43_CH4871 NONE
 CT43_CH4870 NONE
 CT43_CH4869 NONE
 CT43_CH4868 4817741 .. 4817756 -  -6.8    -5.626   TACTTTATAAAAAAA              GAGGGA ACAT CCCCTC               TTTTTTATACGTCAT 100 30
       gntP3 4816252 .. 4816299 - -22.6  -5.43621   AGAAAGCACAAAAAA CGAATAAAACCTACAGAGGAAAT GTA ATTTC-TCTGTAGGTTTTATTCG TTTAAATCTGACCTC 100 46
 CT43_CH4864 4814405 .. 4814441 - -18.3  -3.65109   ATATAAAAATATGAA    TAAAATAGCCTTGTGCA ATA TGCACAAGGCTATTTTC    AATAGTTTTTAATAA 100 41
 CT43_CH4857 NONE
 CT43_CH4856 4804634 .. 4804651 -  -2.1  -3.34398   TTGTTCTGGTAAATA             TGGTCATA CAA TAT-ACCA             TCCAATTGCAATGCC  44 100
 CT43_CH4855 4804036 .. 4804071 - -14.2  -5.66684   GAAGTGATAAAAAAA    CAAAGCTGCTCTTCCC TAAA AGGAAAAGCAGCTTTA     TTTACATTTTCAACT 100 27
 CT43_CH4853 NONE
 CT43_CH4852 4800110 .. 4800134 - -14.4  -6.22691   GAAGAATAAAAAAAA          CAGCTATCGC GTGTA GCGATAGCTG          CCCCTTATTACTTCG 100 33
 CT43_CH4851 NONE
 CT43_CH4850 4798804 .. 4798819 - -10.4  -4.93661   ATATTAATAATAAAA              GGAGGC TTTC GCCTCC               TTTATTTACTCATCA 100 27
 CT43_CH4849 4798267 .. 4798299 - -12.2  -4.35042   TTTACCATAAAATAA      CAAACCCGATTCTC TCATC AAGAATCGGGTTTA      TACTTACAATCCTAA 100 29
 CT43_CH4848 NONE
 CT43_CH4847 4795104 .. 4795148 - -24.8  -3.25079   TAATAGCGTAGAACA TTGAAACAGAAAAGAGATGG TTTTG CCATCTCTTTTCTGTTTCAA ATTACCCTTATCAAA 100 98
 CT43_CH4843 4792603 .. 4792624 -  -5.2  -6.08342   TAAGAAACAAAAAAA           CCTTCACT CTATAT AATGAAGG            TTTCTTACTTTTTAT  95 30
 CT43_CH4842 4792068 .. 4792086 -  -5.3  -6.23317   AGAAAAAGAAAAAAA             CATCGCA ATATG TACGATG             TTTTTTCGGGTGTGT  95 52
 CT43_CH4841 4791380 .. 4791398 -  -8.9  -4.62069   CCTCCATGCCAAAAA             TGGTAGG AGTAA CCTACCA             TTTTTAATATATGAA  90 73
 CT43_CH4840 4790735 .. 4790745 -    -4   -2.8458   TTCAAAAACTATAAT                 TTCA TTT TGAA                 TAACTGCCAGTTAAC  47 16
 CT43_CH4839 NONE
 CT43_CH4838 4787940 .. 4787958 -  -5.9  -5.80248   GAATACACAAAAAAA             GGGCGCT TAATG AGCGCTC             TTTTTTCATATCGTA  95 224
 CT43_CH4836 NONE
        feoB NONE
 CT43_CH4834 4784460 .. 4784505 - -14.5  -3.69386   GTAAAAATTAAAAAG TAAA-ACAAAAAAGCTTTGCGA AAT TCGCAAAGCTTTTTTCTATTTA TGAGCAACTTGTTCC 100 19
 CT43_CH4832 4782769 .. 4782796 -    -7  -4.80729   AAATATAATAGAAAA        CCGACATGAATA TATT TAGACATGTCGG         TTCATTTGTCTCTAT  83 47
 CT43_CH4831 NONE
 CT43_CH4830 4781768 .. 4781794 -  -2.3  -3.17798   TCACAAACGATTTAA         TCATGGTAAAC AATCG GTTTGACATGA         TTACGCCCCCTTACG  42 36
 CT43_CH4829 4780687 .. 4780716 - -20.9  -4.73388   AATCGTTATGAAAAA       GAGGGTGTGCCAA CAAT TTGGCACACCCTC        TTTTTATTATTAAGT 100 283
 CT43_CH4826 4777511 .. 4777530 - -10.8  -4.82855   CACTAAAGTGAAAAA            GACACTTC GTTT GAAGTGTC             TTTCTTGTACGTATG 100 163
 CT43_CH4823 4774281 .. 4774335 - -12.5  -4.35518   AAGCGTATATTAAAA TGTCACCCTTTCCACCCGGG--AGGAT TTG ATCCTGTCCCAGATAAAAAGGATGACA AAGTAAATTCTTAAT 100 36
        luxS 4773354 .. 4773374 - -12.7  -5.38047   CATTCACACAAAAAA            CTCCTGTTT TTC AAACAGGAG            CTCTCATTAATATAT 100 162
 CT43_CH4821 NONE
 CT43_CH4820 NONE
 CT43_CH4819 4771482 .. 4771501 -  -7.9    -5.252   TACTTCCATAAAAAA            GAAGAGC TTGTGT GCTCTTC             TTTAACTCACTACTT  91 27
 CT43_CH4816 NONE
       mutTA 4769300 .. 4769336 - -13.9  -6.06529   TACATACAAAAAAAA    GAAACCGGCCACTTTAC TTC GTAAAACAGCCGATTTC    TTCTATATGTTTCAT 100 2
 CT43_CH4814 4768668 .. 4768697 - -10.1  -4.44307   GACAAAAAATAATAA       GAGGAGGCAGTTGT TCA AAAAC-GCCTCCTC       TTCCTTTATTATTCA  93 34
 CT43_CH4812 4766661 .. 4766685 -  -8.7  -5.28683   ATCAACATGAAAAAA          CGCAAAGAATT AAA AATTCTTCACG          CTTTACTTTAACGAA  95 65
 CT43_CH4811 4766228 .. 4766263 -    -7  -5.61881   TTGGAAAAAGAAAAA    GAAGCTGACTCAAAACA GTG CGCTAT-AGTCAGCTTC    TTTCTTTTACCTTTT 100 32
 CT43_CH4807 NONE
 CT43_CH4806 4762922 .. 4762955 - -19.1  -3.45737   CAACTATTACTATAA     CGAAAAGAACCTGCC ACAA GACAGGTTCTTTTCG      TTATTTTATGATAAA 100 64
 CT43_CH4804 4759119 .. 4759142 - -11.2   -5.2112   AATACTATGAAAAAA          GAACTTGTAT CGTT ATACAAGTTC           TTTTTGTTTCTTTTA 100 38
 CT43_CH4801 NONE
 CT43_CH4800 4753404 .. 4753425 -  -7.4  -5.32599   GATAAAATAGAAAAA           CATCACTT ATTTGG AAGTGATG            TTTTTTCTATTTAAT 100 36
 CT43_CH4799 NONE
 CT43_CH4798 NONE
 CT43_CH4797 NONE
 CT43_CH4796 4748192 .. 4748226 -  -5.8  -3.05816   CCATCTCTTATGTAA     TCCCCTTCATATCCAT TTT ATAGACAAGAAAGAGA     CAAGGTTAAAGCCAT  57 118
 CT43_CH4795 4747045 .. 4747061 - -12.3    -5.626   CATTTCATAAAAAAA              GACCCGA GAT TCGGGTC              AACAAATAGAAATAT 100 101
 CT43_CH4793 4745123 .. 4745152 - -13.1  -6.14618   TATAAAATAAAAAAA       TGTGAATCCAAAA TACA TTTTGGACTCACA        TTTCCTTTACTATAC 100 35
 CT43_CH4792 4744007 .. 4744040 - -14.1  -6.20267   CCAAAAATAAAAAAA     TAGGAAAGCAGATCA TAGG TGATCTGTTTTCCTA      TTTTGATATAGGTTC 100 23
 CT43_CH4789 4742890 .. 4742915 - -14.9  -5.38047   CACTTACATAAAAAA         GAAGCTTACGT GAAA ACGTAAGCTTC          TTTCTATATCTTATA 100 235
        metK 4739424 .. 4739446 - -13.5  -6.01187   AACGAAATAAAAAAA           GCTTTGCGC TCACC GCGCAAAGC           TTTTTTTCATATATT 100 39
 CT43_CH4785 NONE
 CT43_CH4784 4737469 .. 4737491 -  -9.9   -5.0916   GCTTGAACAGAAAAA           CTCCCTTCA AAAAA CGAAGGGAG           TTTATTACACACTTG 100 273
 CT43_CH4780 4734225 .. 4734242 -  -5.7  -2.67803   CCTCTATTAAATGTA             CAAATAA TGAT TTATTTG              TTTGTTTTTACTATA  55 19
 CT43_CH4779 4733105 .. 4733121 -    -8  -5.58179   TATTATAACAAAAAA              CCACTC TACAT GAGTGG              TTTTCTTCATCACTG 100 35
 CT43_CH4778 4732827 .. 4732852 - -10.6  -5.40464   GATCATAAATAAAAA         GCATTTGTAC CATCGT GTACAAATGC          TTTTTTATTTACTAT 100 30
 CT43_CH4771 NONE
 CT43_CH4770 4726824 .. 4726844 -    -9  -5.16132   TATAGCAAAATAAAA            CCAGGTCA TATTG CGACCTGG            TCTACTCTGATTGTT  95 27
 CT43_CH4769 NONE
 CT43_CH4768 NONE
 CT43_CH4767 4723911 .. 4723938 - -14.3  -5.46706   AGCTGAAAATAAAAA        TAGGCTGTTCC ACAAAA GGAACAGCCTA         CTTCTCTCTTTATTT 100 35
 CT43_CH4766 NONE
 CT43_CH4765 4721016 .. 4721051 - -16.5  -4.07568   TGTTTTTTCTGAAAA    TAATAAAAACCGAGC GTTTTT GCTCGGTTTTTATTA     TTAATCTTCTTTCGG 100 26
 CT43_CH4764 NONE
 CT43_CH4763 NONE
 CT43_CH4762 4718335 .. 4718369 - -24.6  -4.73633   TAACAATATATAAAA     GGGTAGACTGCATGAA ATT TTCATGCAGTCTACCC     TTATTTATACTATCC 100 35
 CT43_CH4761 4716422 .. 4716449 - -16.4  -5.63645   CCAAAATACAAAAAA        CCTCTCATCCCT AGAA AGGGACGAGAGG         TTATAGATTCCCGCG 100 419
        leuS 4713921 .. 4713944 -   -14  -5.36441   TTTTTACACAAAAAA          GCTCAGAGTA TACA TACTCTGAGC           TTTCATTTAGAATAA 100 42
 CT43_CH4759 4712711 .. 4712730 - -12.2  -5.48303   AGAAGCTGAAAAAAA            CTGCTAGG ATTT CCTAGCAG             TTTTTTATTATGTCT 100 56
 CT43_CH4753 4706220 .. 4706238 -  -3.2  -4.05677   AAAGAACGCAAAGAA             TCGAAAAA CTA TTTCTCAA             TTTTCTCGCAAAACT  55 342
 CT43_CH4751 4705784 .. 4705805 -  -8.1  -6.09196   TGCAAAAGAAAAAAA           CTTGAAACA GACT CGTTTCAAG            TTTTTAGCTATTAAC 100 40
 CT43_CH4750 NONE
 CT43_CH4749 4705159 .. 4705180 - -11.7  -5.38549   TTTAAATAATAAAAA           CTCCCTTAA TTCC TTAAGGGAG            TCCTGCAATTGAATC 100 17
 CT43_CH4748 4702363 .. 4702386 -  -9.7  -5.39755   TACAAGGATAAAAAA          CCTTGAAAC ATAAAA GTTTCAAGG           TTTTCTGCTTATTAA 100 37
 CT43_CH4747 NONE
 CT43_CH4746 4699810 .. 4699830 -  -9.7  -3.54741   TAGCAGTTGCGCAAA            TCGCAGGCA TTA TGGCTGCGA            AACGAACTTCTGATA  80 350
       moeA3 NONE
        mobB NONE
       moaE3 NONE
       moaD3 4697035 .. 4697059 -  -8.6  -5.63504   AACGCCATAAAAAAA          CGACTTCCCC TACTT AGGAAAGTCG          TTTTAATGAATCCAA 100 43
 CT43_CH4740 4696551 .. 4696567 -  -3.6  -3.35775   ATCACCCCGCAAATA              GCGGAA TAAGT TACCGC              TCTCAATCATTAGAA  48 28
        glcU NONE
         gdH 4694802 .. 4694827 - -13.4  -5.75342   TTTTTGTAAAAAAAA         GGACGAAGAG TTTTAT CTCTTCGTCC          TTTTATATTACCCAC 100 33
 CT43_CH4736 NONE
 CT43_CH4735 4693556 .. 4693602 - -24.3  -3.01924   CATGTTGTCCCAACA TAAAACATAAAAAAGAGCTGG GTGAG CCAGCTCTTTTTTATGTTTTA TAAACGATCATTGCT 100 16
 CT43_CH4733 NONE
 CT43_CH4732 4692121 .. 4692159 - -17.8   -3.2624   CAAACAAGTGAGCAA   CAATAAAAAGGATGACCA TTT TGGTCATCCTTTTTATTC   TTCATTCTCCACAAT 100 20
 CT43_CH4729 4687213 .. 4687231 -  -6.7  -4.57755   ATTTATCATAGAAAA            GGGGACGT AATT ACG-CCCC             TCTTGATTTCAACTT  79 17
 CT43_CH4728 4686403 .. 4686431 - -13.3  -3.49486   ATGTAAATAAATACA        TACCCCTTTCTAA CTA TTAGAAAGGGGTT        TTTTCTGCACCTATA 100 47
 CT43_CH4726 4684331 .. 4684353 - -14.2  -3.31182   TCAATTAAAAAGAAG           CCGCCCTCTA AAG TAGAGAGCGG           TCATTATTCATATAT 100 60
 CT43_CH4725 4683591 .. 4683605 -  -5.8  -4.67038   TTCTCAAAATTAAAA               TAAAGT GAA ACTTTA               ATGAGCGAGATAAAA  74 143
 CT43_CH4724 4681236 .. 4681261 -  -4.7  -5.50723   TTATGAAAAGAAAAA         CCGCAACATTT CTAC ACATGTTGTGG          ATTCATATATTTTAC  82 182
 CT43_CH4723 4679963 .. 4679984 -  -4.4  -5.68438   CTACCAAACAAAAAA           CCAAGTAC GTACGA GCACTCGG            TCCGTTTCTTTCAAG  83 434
        trmB 4679220 .. 4679239 - -10.8  -5.76633   TTAGATATAAAAAAA            CCTATGCA TTAC TGCATAGG             CTCTGTACGATATTT 100 14
 CT43_CH4721 4678264 .. 4678297 -  -7.5  -5.55769   TTCTATAATAAAAAA     GAAGCTGCTCCAATA AATA TAATGGAACAACCTC      CTATTTTTATGCTTC 100 32
 CT43_CH4719 4676589 .. 4676607 -    -6  -5.53288   TTCAATCTAAAAAAA             GAAGGG TTTTTCG CCCTTC             TTCTCTACGCGTTAT  90 30
 CT43_CH4718 4675795 .. 4675818 -    -3  -2.62184   CTTTCTTTTATACTA          CCATACATCG CGCA CGGTGCAAGG           TTTATGCTTGCTTTT  42 27
 CT43_CH4717 4675369 .. 4675395 -  -2.9  -5.40072   TCCCTTCCAAAAAAA         TAACCTCCCCC GCGAA GGTAGAGGTTG         TTTTACAATTCAATT  74 52
 CT43_CH4716 NONE
 CT43_CH4715 4673879 .. 4673906 - -14.2  -5.47914   AAAAATGACAAAAAA        GAGAGGCTGCCC AAAA GGACAACCTCTC         TTTTTTATATCAATT 100 39
 CT43_CH4714 NONE
 CT43_CH4713 4672354 .. 4672377 -  -8.9  -4.70659   TTTCATATGGAAAAA          CGCAGCCTT TCATGT AAGACTGCG           CTTAAGCTTTACTCT  90 27
 CT43_CH4712 NONE
 CT43_CH4711 4667045 .. 4667068 -  -6.8  -5.16133   ATGATAACAGAAAAA          CTGATAGG GTCAATCA CCTATCAG           TTTTTCTCTCTTTTA  88 38
        murC 4665477 .. 4665520 - -15.6   -3.1704   AATAAAAGTTGAACA CAACAAAAAAGACGCACAGC CACC GCTATGCGTCTTTTCTATTA TTTCTCTGCAACTTG 100 23
 CT43_CH4709 NONE
 CT43_CH4708 4664087 .. 4664099 -  -4.9  -4.59773   TTTTAGGTGTAAAAA                GTTAA ATA TTAAC                ACTTTCTTTTGATTT  69 14
 CT43_CH4707 NONE
 CT43_CH4706 4662974 .. 4662991 -  -6.3   -4.9792   TAGTTCATAGAAAAA             GGCCATT TCTA AATGACC              TTTTACACAATGTAC  82 28
 CT43_CH4705 4662285 .. 4662325 - -13.7  -4.34267   CCAGAGAACTTAAAA TAATAAAAA-CGCTCGGA ATTATA TCCGAGCGTTTTTTATTA  TCCTCACCCTATATC 100 213
 CT43_CH4703 NONE
 CT43_CH4702 4660118 .. 4660142 - -10.1   -6.4275   CAAAAACAAAAAAAA          GAAGCAAGC ACCTTTA GCTTGCTTC          TTTTTACTTTATATT 100 29
 CT43_CH4701 4658984 .. 4659001 -  -5.6  -6.55664   TAAAATAAAAAAAAA             GACAGT TTACAT ACTGTC              TTTTTTACAAGAAGG 100 30
        ccpA 4656365 .. 4656396 - -14.6  -3.36749   TATCCTGAATATGAA      TAAAAGCTCACAGC AATC GCTGTGAGCTTTTT       TATACTTACTTCGTT 100 31
 CT43_CH4696 4655008 .. 4655029 - -14.5  -4.91712   TTGAACGGATAAAAA           GGCATGTCC CTCG GGACATGCC            TTTTCTATATGCTAT 100 37
 CT43_CH4692 NONE
 CT43_CH4691 4650459 .. 4650478 -   -10  -5.80248   TAACATACAAAAAAA            CCTGCCAA TTAC TCGGCAGG             TTCCCTACACATTAA 100 30
 CT43_CH4690 4650038 .. 4650064 - -10.2  -5.06816   ATTTTCGAACAAAAA         GCTCACAGCCTC TAT AAGACTATGAGC         TTTTTTCAAAAGAAA 100 31
        acsA 4644600 .. 4644623 - -11.8  -5.86465   AATAACATAAAAAAA          GGTCTGAACA TTTT CGTTCAGACC           TTCCTCTCTTAATCT 100 34
 CT43_CH4684 NONE
 CT43_CH4683 4643458 .. 4643471 -  -2.4  -2.77182   TTTGATACGCAAGCA               TGAG CTCCTC CTCA                ATCCCAATCTGCGCC  40 23
 CT43_CH4682 NONE
 CT43_CH4681 4642403 .. 4642422 -   -10   -5.9362   GAAAACATAAAAAAA            TCGCCCCT TCAA AGGGACGA             TTTTGATTATCGCGT 100 320
       tyrS1 4641055 .. 4641077 - -12.8  -6.11229   ATTAAAACAAAAAAA           GCTTTGAGGA ATT TCCCCAAAGC           TTTTTATTTATTAGT 100 36
 CT43_CH4679 4640787 .. 4640805 - -13.2  -4.88388   ACAACCTGACAAAAA             GCCAATCC AAT GGATTGGC             TTTTTCGTTTATATA 100 51
        megL 4637146 .. 4637204 - -14.9  -4.75356   AAACATATGTAAAAA GAAAAGAGCGAGTTATCGATTTAGTAC GTCCT GTACAAAACCGATAGCTCACTCTTTTT TTATTGATTAACAGT 100 26
 CT43_CH4674 4635846 .. 4635872 - -10.9  -5.23644   AAGTAAACATAAAAA         TCCCCACCTCA GTTCG TTAGGTGGGGA         TTCTTCACATATGAA 100 30
 CT43_CH4672 4633821 .. 4633831 -  -4.6  -4.88736   CATTATGTATAAAAA                 GGGA ATT CCCC                 TATATTTAACAACTA  70 151
        ezrA 4632025 .. 4632048 - -12.6  -5.75478   AATTACACAAAAAAA          CAAACCCTTT TATG AAAGGGTTTG           TTCATTGTCTACATA 100 11
 CT43_CH4670 NONE
        thiI NONE
        sspB 4629120 .. 4629145 - -17.7  -5.31855   TATGAACAACAAAAA         GAAAGAGCGGG AAAA CCCGCTCTTTC          TAAGCCATCGTATAT 100 45
 CT43_CH4667 4627325 .. 4627350 -  -3.3  -2.64155   TCTTTTTTAAATTTA         TAAAACCGTAC TTGT GTTCGTTTTTA          TATTATCATTGTTTT  44 78
 CT43_CH4666 4626836 .. 4626857 -  -7.3  -5.94713   ATTGTATAAAAAAAA           GCACCATTT CAAA ACATGGTGC            TTTTCTAAAAATTAC 100 37
 CT43_CH4665 4625044 .. 4625081 - -23.1  -4.33274   TTTATAGGATTAAAA   TAACCGCAGAATTATGG AATT CCATAATTCTGCGGTTA    TTTATTTACCCCGAT 100 173
 CT43_CH4663 NONE
 CT43_CH4662 4622943 .. 4622975 -    -8  -5.64274   TTATTTACAAAAAAA     TAAAAGAAGCTAACC TATT GATTAGCTTC-TTTA      TTCGTTAAATTTGAA 100 30
 CT43_CH4661 4622313 .. 4622333 - -10.5  -5.35459   ATATATGAGAAAAAA            CGACCTCTT TAT AAGAGGTCA            TTTCCTTCACATTAC 100 37
 CT43_CH4660 4620945 .. 4620957 -  -4.9  -3.49176   CAAATTCACCAAATA                TGAAA ACG TTTCA                TCATTAGCAAATTTT  56 227
        ackA 4619628 .. 4619651 - -11.8  -5.80951   ATCCAAAAGAAAAAA          GACGAAATCC TATA GGATCTCGTC           TTTCTTTTCATATAT 100 40
 CT43_CH4656 4617503 .. 4617524 - -12.3  -5.46129   CAACAAATTAAAAAA           GCGAAAGGC TTCG GCCTCTCGC            TTTTTTTTATGCTCT 100 32
 CT43_CH4653 4615766 .. 4615794 -  -3.7  -5.31059   ACACCAATGAAAAAA        GCATGCCCCTCAA TTA CTTTGGGTCATGC        TTTTTTGTCGTAACA  72 20
        argG NONE
       argH2 4612645 .. 4612681 - -10.2   -5.2112   AATATTAGTAAAAAA    CAAAGTACGCCAGACT TTACT AGACTGGCGTACTTCC    CAACTCAATTCTTAA 100 30
 CT43_CH4649 4612193 .. 4612228 - -14.8  -4.52781   TAAGTATAATTAAAA    GAAAACGACTGCAGGC GAAT GCCATCAGTCGTTTTC     TTTCTTTATTTAAGC 100 31
 CT43_CH4647 4611192 .. 4611215 -  -7.5  -4.62471   AATTTATAGATAAAA          CACCAAGTCC ACATA GG-CTTGGTG          TTTTTCATTTTATCA  82 30
        fabG 4609708 .. 4609721 -  -3.1  -3.84712   TAATTTTATATTAAA               GGACA GTAT TATCC                GCACCTCTCAGCACA  52 85
        ald2 4608394 .. 4608418 - -10.8  -5.36441   TCCCCATATAAAAAA          GACCCTCCTT ATGAA AAGGAAGGTC          TCAAATGTATTTCTA 100 41
 CT43_CH4643 NONE
 CT43_CH4642 NONE
 CT43_CH4641 NONE
 CT43_CH4640 NONE
 CT43_CH4639 4605736 .. 4605755 -  -5.7  -5.18726   TTTTCATAATAAAAA            GCACATC CATTTT GATGCGC             TTTTCACATATATTT  83 103
 CT43_CH4638 4605076 .. 4605099 -  -6.8   -5.2112   AATATTATTAAAAAA          GAAGGCCACTC AAA AAGT-GCCTTC          TTCTATTTCACTAAT  88 281
 CT43_CH4636 NONE
 CT43_CH4635 4603324 .. 4603341 -  -8.4   -5.4593   GTAAAATAATAAAAA             GGCAGC GTGAAT GCTGCC              TTTTTTTATTCCTCT 100 31
 CT43_CH4633 4601351 .. 4601378 -  -6.4  -4.72846   CTACACACGTAAAAA        CCCTTCACTT TTCTTTTC AAATGAAGGG         TTTCTTTTCTATAGT  76 34
 CT43_CH4631 4599594 .. 4599624 - -16.4  -5.77677   TAAAACAACAAAAAA       GATGGAACAAATCA AAA CGATTTGTTCCATC       TTTTTATTTATCAAT 100 29
 CT43_CH4630 NONE
 CT43_CH4629 4599143 .. 4599178 - -16.5  -4.01158   AAGTCTATGAAACAA    CGTAAAAAAGCATCA AAATTG TGATGCTTTTTTACG     TCCTCTAACTTTTAA 100 2
 CT43_CH4627 4597700 .. 4597726 -  -8.8  -5.02421   AAAAGGAAAAATAAA        GAAGGAG-GGC TTTAGC GCCGCTCCTTC         TTTTCGTTCTAACAT  95 49
        dnaE 4593376 .. 4593400 -  -2.1  -3.21099   TGGTCTGACCACGAA          CACTACTACTA TAA TAATCGAAGTG          TAGGGAAATTGTCCA  44 41
 CT43_CH4623 4591992 .. 4592013 -  -2.3  -2.56596   CCCGCTACCAATCCA           TCCTCTTCCA TAA TGGAAC-GGA           TTTTTTTTACAATTT  39 86
 CT43_CH4622 4591271 .. 4591313 - -12.2  -3.65224   AGGTTAGCGTAAGAA GAAAATGGGGCTAACACCAA AGT TTGATGTTAGCCTTATCTTC TCAATCTGTCTAATA  95 127
        accD NONE
        accA 4589366 .. 4589391 -  -6.9  -5.18726   TTTTCATAATAAAAA         CGTGCATTC GCGAAGAG GAACGCACG          CTTTTCTTATTTTAT  88 32
        pfkA NONE
         pyk 4586467 .. 4586488 -  -9.5  -6.06723   TTGTGTAAAAAAAAA           GAGAAGGAC TCCG ATCCTTCTC            TCCGTATTACTTATA 100 36
        fxsA 4585886 .. 4585916 -  -9.9  -5.84432   TACAAGACAAAAAAA       TAGCACTTAGATC GTTAT AATCTAAGCGCTA       CTTCTGAATGATAAT 100 23
 CT43_CH4615 4583132 .. 4583170 - -12.8  -4.91109   GTTTTATGATAAAAA   CAACATAAAACAATATCA TTA TAAAATTGTTTTATGTTG   TTTTTATTTTATCTG 100 155
        citZ 4581643 .. 4581662 -   -10  -3.78022   TTCATATGTATGAAA            CTGAGGGA ATAA CCCCTCAG             TTCAAACCGTTAGTC  87 127
        citC NONE
         mdh 4579303 .. 4579341 - -15.7  -3.59649   AAACAATTCGGTAAA  TAGTAGAAAAAGATTCGG AATC CCGAATCTTTTTC-ACTA   CTATTCAATTATTAA 100 37
 CT43_CH4611 4578611 .. 4578647 - -17.6   -4.8622   TTTTTCAACTAAAAA   TAGCGCTAGCAT-CCTT ATTC AAGGTATGCTAGCGCTA    TTCATATTTTCATCT 100 42
 CT43_CH4609 NONE
        phoP NONE
        phoR 4575272 .. 4575327 -  -7.2  -5.71712   TTTCACAGAAAAAAA CCGTTCCTTTCCTCTCTCTATATTAAC ATG ACTAATAGAGAGA-AGAAAAATAACGG TTATTTTCTTTCATA 100 204
        polA NONE
        mutM NONE
 CT43_CH4604 4571010 .. 4571033 -   -11  -4.77165   CTCCTCATAATAAAA          GGCGCGAAAC CAAT GTTCCACGCC           CATACTTACATTTTC 100 31
        coaE NONE
        gap1 4569208 .. 4569231 -  -8.9  -6.07374   AGAAAAAATAAAAAA          GAGGGCAAA TATTGC CTTGCCCTC           TCCTCCCTTATTCAC 100 41
 CT43_CH4601 NONE
       speD1 4568427 .. 4568445 -  -9.6  -5.04601   TTTATAAACTAAAAA             GAGGTGCA TTA TACACCTC             TTTACATTTTAAATC 100 55
        nrdR 4567659 .. 4567684 -  -6.1  -4.66163   ATTCTTAGTGAAAAA         GAGCTATTAGC TTTC GCTTCTAGCTC          TCTTATCCTATTACT  76 72
 CT43_CH4598 NONE
        dnaI 4565168 .. 4565199 - -15.4  -3.30389   AATATCACTATAATA      CAAAAGAGCAAGCT TCTC AGCTTGCTCTTTTA       CTTATGACGACGGTT 100 23
 CT43_CH4596 4563577 .. 4563603 - -11.6  -5.79595   TCTCAAAATAAAAAA         CACTCATCCCGT AAA AAGGGACGAGTG         TTGAATTCGTGGTTC 100 272
        thrS 4561576 .. 4561603 - -14.2   -4.0162   CTTTTATATTACAAA        GAAAAGCCGCGG TATA CCGCGGCTTTTT         CTTATCGTTTTCCTT 100 27
        infC NONE
        rpmI NONE
        rplT 4560054 .. 4560077 - -12.6  -6.04953   ACACAAACAAAAAAA          CCTTAGAAGA AAAT TCTTCTAAGG           TTTCAACTAATTAAT 100 40
 CT43_CH4591 4559146 .. 4559158 -  -4.9  -4.13271   TATACAATAATTAAA                TTGAA ATA TTCAA                AAATTAAATTAGTAT  62 34
 CT43_CH4590 4557975 .. 4558010 - -15.8  -3.63744   GGCCTTTTTAAAACA    TA-AAAAAGCGAAGGAG AAT CTCCTTCGCTTTTTCTA    TTAATTAAATGTAAT 100 26
 CT43_CH4588 4556381 .. 4556393 -  -3.4  -2.70298   TCCTGCAATTACAAT                TGAG GACAT CTCA                TCTCCCCCTTACTTA  44 34
 CT43_CH4587 4554574 .. 4554608 - -13.1  -2.60508   CACTCTTTAAAAAGG     CAAAAAAGCAGGGAA ATTAA TTCCCTGCTTTTCTA     TTTGGTTTATTGCCT 100 7
 CT43_CH4586 NONE
 CT43_CH4581 4550501 .. 4550524 -  -8.9  -6.20267   TTAAAAATAAAAAAA          CCTCGCTCCC AAAAA GGGA-CGAGG          TAAATTCGCGGTACC 100 290
        pheS NONE
        pheT 4546965 .. 4546985 - -11.2  -6.09888   GTGCAATAAAAAAAA            TTGCCGGA ATGAA TCCGGCAA            TTTTCTAATTACTTA 100 34
        asnC 4545112 .. 4545131 - -13.6  -5.48213   TATGCAAAATAAAAA            GCGAGAGG AAAT CCTCTCGC             TTTTTTCACATTTTA 100 38
 CT43_CH4577 4544876 .. 4544918 -   -18  -3.14146   GATAATATGATGTAA CACATAACAAAGGAGAGCCC TTA AGACTCTCCTTTGTTATGTT AGCTTCGTTTCTGCT 100 24
 CT43_CH4575 NONE
 CT43_CH4574 4542350 .. 4542373 -    -9  -5.71712   TTTCATAGAAAAAAA          CTTCTCTTTC CGAA AAAAGAGAAG           TTATACTCTGCTACC 100 26
 CT43_CH4573 NONE
 CT43_CH4572 4538054 .. 4538091 -    -8  -5.27206   CATATATAATAAAAA  CGTCAATCTATGGCAATA TCAT TA-TGCCAC-GATTGACG   CTTTTTCACTTCGCA  93 154
 CT43_CH4571 4537312 .. 4537339 - -12.2  -5.60993   TTTCTGACAAAAAAA        TATAGGGAGAAA ATTT TTCCTCCCTATA         ACTGCCCTTTTAATA 100 21
       brnQ6 4535499 .. 4535523 - -12.3  -5.60993   TTTTCTACAAAAAAA          GAGACTTTCTA TTA TAGAAAGCCTC          TTTTCTCTATTTTTC 100 32
 CT43_CH4569 NONE
 CT43_CH4568 NONE
 CT43_CH4567 4531122 .. 4531151 - -15.9  -4.10459   TACAATATGAAACAA       GTCTTGATGCACG CGAA CATGCATCAAGAC        TCCAAAAATTACAAT 100 34
 CT43_CH4566 4530205 .. 4530219 -    -5  -4.34402   TCCTTTATATTAAAA               TGCATC ACG GATACA               TCATTTTTTTCAATT  64 15
 CT43_CH4565 NONE
 CT43_CH4564 4528314 .. 4528326 -    -2  -3.15961   GAAAATATCACCTAA                TTCA TATAC TGAA                TAGAAAAAGGTACCT  42 137
        srtB 4527592 .. 4527633 - -21.3  -3.53224   TATTTCTTTTTTAAA GTATAGAATATGAGAAGCG TTAC CACTTCTCATATTCTATAC  TTTTTTATTTACTGT 100 34
 CT43_CH4561 4525722 .. 4525745 - -13.2  -5.29445   GTCCAATAAGAAAAA          GGAGCTCAAG TAAA CTCGAGCTCC           TTTTTCTTTATTAAC 100 36
 CT43_CH4558 4524444 .. 4524455 -    -3  -3.02324   TGTATGTAAATGACA                CATA ACAA TATG                 AAAATAATACCTATT  45 56
 CT43_CH4557 4523523 .. 4523549 -  -7.4  -5.76949   TACGCTGAAAAAAAA         GCTTGTAGAA TCTACTT CTCTACAAGC         TAAAACTGCATCTTT 100 25
 CT43_CH4556 NONE
 CT43_CH4555 NONE
 CT43_CH4554 NONE
 CT43_CH4553 NONE
 CT43_CH4552 4519925 .. 4519967 - -17.4  -3.03554   GTAACGAAGCATACA TATACAAAAAAGAGTTGGTG TAA CACCAACTCTTTTTCACATA TTCTTATCATACAGT 100 32
 CT43_CH4549 4517690 .. 4517713 - -12.5  -4.90917   AAAGTTAATTAAAAA          GGAGGCTTC GTTTTA GAAGCCTCC           TTTTTATATACTAAA 100 197
 CT43_CH4546 4513117 .. 4513144 -   -10  -3.95787   TATTATATGTAGAAA        CTCTCTTAATCT TAAA AGAGTAAGAGAG         TTTGTCATTAACTTA  87 33
        fadD 4511272 .. 4511283 -  -7.2  -4.85782   TTTTTCAAAAAGAAA                GGGC CTTA GCCC                 GTTTGCTCATCCTCA  86 19
 CT43_CH4544 NONE
 CT43_CH4543 NONE
        etfB NONE
        etfA 4507856 .. 4507880 -  -7.2    -4.946   ATTAAATACTAAAAA          GATGAGAGAC AGGGG ATCTCTCACC          TTTTTCTATATATAG  88 74
         trx 4507365 .. 4507405 -  -9.4  -5.10077   AAAGACTGTAAAAAA GAAAATAAAAAAAGCTACC AACT GGTAGC-TTTTTTATTTTA  GAAATGTTTAGAAAC 100 23
        uvrC 4505454 .. 4505484 - -14.2   -5.2422   AATTATACCAAAAAA       CAGAAGACGTTGTA AAC TACAACGTCTTCTT       ATCTGTTAAATACGT 100 11
        sdhC NONE
        sdhA NONE
        sdhB 4501378 .. 4501420 - -17.4  -2.89705   AACTGAAAAATGAAG TTATAAATATTGCCCCTTCA AGA TGAAGAGGCAATATTTATTA ATAGTTATTATCGCT 100 23
 CT43_CH4534 4500842 .. 4500864 - -13.6  -5.48063   ATGGAAGACAAAAAA           TAAGAGAGCA AAT TGCTCTCTTA           TTTTTCTTTCACTCT 100 42
 CT43_CH4532 NONE
        motB 4498203 .. 4498224 - -14.5  -5.18643   TGAAGTAAAATAAAA           GAGGATGGC ATTC GCCATCCTC            TTTATTTTACTTTCT 100 27
 CT43_CH4529 NONE
 CT43_CH4528 4494875 .. 4494912 - -12.4  -4.15061   TAATTTATACATAAA   GA-AAAAGCATGATTTC AATAG GAAATCATGCTTTTCTC   TCATTATTGACGCTT 100 29
 CT43_CH4527 4494335 .. 4494361 -  -8.1  -6.13503   TATGAATAAAAAAAA        GCGAGC--CCTCA TTA TGAGGAAGCTCGC        TTTTTTATTCTTTCA 100 30
 CT43_CH4524 4491828 .. 4491853 - -14.9  -4.54449   ATAGTGTATACAAAA         TCCCCTATAGA TTTT TCTATAGGGGA          TTTTTTCATGAAGAA 100 31
 CT43_CH4522 NONE
 CT43_CH4521 NONE
        gerE 4488363 .. 4488391 -  -8.2  -6.01187   AAGCAAACAAAAAAA        TAGCCGACTCTT TGTAT AAAAGTCGGCTG        CTTTCTTATAGTTCG 100 31
 CT43_CH4519 4487593 .. 4487620 -  -8.5  -4.91511   ATTTTAGGATAAAAA        TACCCACTACC TTTGTT AGTAGCGGGTA         CTTTTTCTATAATTT  93 32
 CT43_CH4518 4486727 .. 4486756 -  -9.3  -5.53991   TATGTACTAAAAAAA       GCAGATTCCCCTC TATT AAGGGAGATCTGC        TTTTTTACGAAATCA 100 30
 CT43_CH4516 4484285 .. 4484313 - -11.1  -5.10064   TGCAAGATAGAAAAA        TAACCGACCTTCT ATA AGAAAGTCGGTTT        CTTCTATATAAAATG 100 46
       racE2 4483271 .. 4483288 -  -9.9   -5.8901   AGATAAAACAAAAAA             CTCCTGA TTTC TCAGGAG              CTCACTTATATGAAT 100 48
        gerM NONE
         rph NONE
 CT43_CH4512 NONE
 CT43_CH4511 4479714 .. 4479770 -  -8.2  -4.92669   GACATAAAAAAATAA GCCCCCTAACTCGTTAG-CG-ACCGCAC ATT GTACGATTCAACTTACGAATTAGAGAGC TTATATATTGCGGAC  90 327
        xerD 4478252 .. 4478265 -  -2.3  -3.63569   GTAAGGCGTTAACAA               CTAGC GTCG GCTCG                TTGTGTGAGGTTTTC  47 465
 CT43_CH4509 NONE
 CT43_CH4508 4477050 .. 4477060 -  -2.6  -2.57132   CTTTCCTCGCACAAT                 TATT TTG AATA                 TATCTATTTATATAT  40 90
 CT43_CH4507 NONE
 CT43_CH4506 NONE
 CT43_CH4505 4473487 .. 4473498 -    -3  -3.63141   AACTAATTAAATTAA                GTTT TGTA AAAC                 GAGCAACACCACGAT  50 460
 CT43_CH4504 4472407 .. 4472431 -  -2.8  -5.03994   TTGCACATATAAAAA          GAGCTACACC TTCTC AGCGTAACCC          TCCTATCAATTACCA  66 224
 CT43_CH4501 NONE
 CT43_CH4500 NONE
 CT43_CH4499 NONE
 CT43_CH4498 4466558 .. 4466580 -  -5.4  -2.96538   ATAATTTACGAGATA           GGCGAGGGCA TAA CGCCCTCTTC           CTGTCTTACTCGCTA  53 31
 CT43_CH4497 4466323 .. 4466343 -  -3.2  -3.29273   CCGATTAGTAGAATA           GGTGGAGCG ATAT CG-TCCGCC            CCGTTACGTTTGTTA  46 38
 CT43_CH4496 NONE
 CT43_CH4495 4465595 .. 4465624 -  -7.1  -5.10064   TGTAAGATATAAAAA       GAAAGGCGATGCC ATTA AACACCGCCATTC        GTTTCACGCAAGTCT  88 42
 CT43_CH4494 4464465 .. 4464488 - -12.6  -5.76237   TAGACAAACAAAAAA          CCTTGTTATC AAAA GATAACAAGG           TTTTTTTAGCGTCCC 100 357
 CT43_CH4491 4462301 .. 4462324 - -12.6  -5.53079   AAAATACACAAAAAA          CCTTGTTATC AAAA GATAACAAGG           TTTTCTTAGCACCCC 100 78
 CT43_CH4488 4459623 .. 4459636 -  -8.1  -3.51934   CTTCTCTTACAAACA               GGCAG ATTT CTGCC                TTTTGCAACCCTTAC  73 93
         tig 4458083 .. 4458108 - -16.3  -4.45083   TCTATATTTATAAAA         CAAGGCACGAT TAAA ATCGTGCCTTG          TTATTTTATTATGCA 100 34
        clpX 4456554 .. 4456586 - -10.8  -4.35044   GTAGCTAAACATAAA      GAAAAACAGCAATT ATAAA AATTGCTGTTTCCC      TTTCGCATTATGCAG 100 33
        lonB 4454758 .. 4454791 -  -6.8  -5.83211   CACGAAAAGAAAAAA     GACTCCGATTAAGC ATACAA ACTTAAACGAAGTC      TGGCAAATTTTATTA 100 51
         loN NONE
        engB 4451698 .. 4451717 - -11.4  -6.04953   ATATAAAGAAAAAAA            CGCGCGAC ATTC GTCACGCG             TTTTTTGTTTTTGTC 100 19
        hemA 4449035 .. 4449074 -  -4.4  -2.78405   GTTATTTAAAAAACT  CATCCGAT-CATCCTTCCA AAT TATAAAGATGGAACGGATG  GTGTCCACACTCTTT  48 6
 CT43_CH4479 NONE
        hemC NONE
        hemD NONE
        hemB NONE
       hemL2 4444161 .. 4444202 - -16.9  -3.16683   AGCTTACTTTATGAA TAAAAAAAAATCGCTCCCC TTAT GGAGAGCGATTTTTCTCTA  ATACATTATTTTAAT 100 31
 CT43_CH4474 4443091 .. 4443114 - -11.8  -4.63932   TAGCCTCTAAGAAAA          GAAGCGAGTG AAAA CACTCACTTC           CTTATTTCGCCTTTA 100 27
        ysxE 4441895 .. 4441932 -   -16  -3.01712   CTTTTCGGGTGAATA   TAAAGAAGATAAGTAG CATTCT CTACTTATCTTCTTTA    TCCCGCTATTTGCGG 100 117
        valS 4438856 .. 4438880 - -13.7  -4.92385   TATACGCAAAGAAAA          GAGACTCACCA ATA TAGTGAGTCTC          TAAAAATATTTTTAC 100 37
        folC 4437479 .. 4437500 -  -8.1  -5.55769   TTGTAGAACAAAAAA           CTAGATAGC AAAG ACTATCTAG            TTTTTCTCTCGAATA 100 22
 CT43_CH4470 4436326 .. 4436349 - -11.2  -5.14698   AAATTCAAAAGAAAA          GAAAGAAGTA CATG TACTTCTTTC           TTACTCATTTTATTA 100 58
         maF 4435562 .. 4435583 -    -8  -3.51557   TCTCTCAAAGAAAAC           CCCATGCA ATTTTA CGCATGGG            TTACATCAATATCAA  73 15
        radC NONE
        mreB NONE
      mreC_2 NONE
        mreD 4432222 .. 4432236 -  -2.9  -3.22094   TTCGACATAAAATTA               GAAAA TCCTT TTTTC               TTTTTCTTCCATCGC  46 8
        minC NONE
        minD 4430667 .. 4430698 - -10.2   -5.4505   CGTGTGAAGAAAAAA      GAAAGCACCTCGCA TATG TGCGAAGTGCTCTT       AACGGATTCCAAAGA 100 24
     spoIVFA NONE
     spoIVFB 4428944 .. 4428969 -  -9.1  -4.95547   TTTACAATAATAAAA         GGTTAGTGCTA TCGT CAACACTAACC          GATTAATTCTTCAAC  95 20
 CT43_CH4460 4427475 .. 4427496 -    -6  -3.42346   AAGATGTTACCATAA           TTCATTGA GTATTG TCAATGAA            TCTTCTACTAACTAT  61 37
        rplU 4427035 .. 4427051 -    -3   -2.6953   TTAACCAGAATTAAG              CGTTGA TAGCT TCAACA              ACTAGCTTAGTGTAA  42 4
 CT43_CH4458 NONE
        rpmA 4426336 .. 4426371 - -18.6  -3.07522   ATACCCCTTAATATA    GAAAAACTCTAACCTG CACT CAGGTTAGAGTTTTCC     GTGAGTTCTTATGCT 100 34
 CT43_CH4456 NONE
        obgE 4424461 .. 4424481 - -12.6  -5.74122   TACGATATAAAAAAA            GACTGCCG TATTT CGGCAGTC            TTAATCGATAAATTC 100 26
 CT43_CH4454 NONE
 CT43_CH4453 NONE
 CT43_CH4452 NONE
 CT43_CH4451 4419782 .. 4419799 -  -7.7  -4.72846   CTACATAGGCAAAAA             GCTAGAG GTTC CCCTAGC              TTTTTACGTGTTTTA  82 21
 CT43_CH4450 4417820 .. 4417837 -  -9.9  -5.63374   CGAATATTAAAAAAA             GACTAGC ATTT GCTAGTC              TAAATGTTTCTTATA 100 20
        pheA 4416783 .. 4416803 - -11.2  -4.07133   TAGCGGGATAAAGAA            TCCCACCT TTTGC AGGTGGGA            TTTTATTAATCTATC  93 106
        nadB NONE
        nadC NONE
        nadA 4410620 .. 4410638 - -10.3  -5.53991   TATGTATGAAAAAAA             GCAACGG GAATA CCGTTGC             TTTACACACGCTCTA 100 27
 CT43_CH4442 4408516 .. 4408533 - -12.7  -5.17576   CACGAATGCAAAAAA             GGCGGGA ATAC TCCCGCC              TTTTTAAACTTCTTC 100 29
 CT43_CH4441 4407682 .. 4407703 - -14.5  -4.29829   ACAACGATGAATAAA           GAGGAAGGG CTAC CCCTTCCTC            TTTTGTTTTGCTATC 100 36
 CT43_CH4439 4406304 .. 4406322 - -13.2  -5.23396   AATAAGTAAGAAAAA             GCAGCTCA CCA TGAGCTGC             TTTTTTTCTTATTTT 100 12
        ruvA NONE
        ruvB NONE
 CT43_CH4435 NONE
        queA NONE
         tgt NONE
        yajC 4400799 .. 4400823 - -14.3  -5.33921   AAAGTAACTAAAAAA          GGCCCTGCACA TTT CATGCAGGGCC          TTCCACATTAGTTTT 100 33
 CT43_CH4430 4399588 .. 4399622 -  -5.1  -4.04415   TGAAATAAGATGAAA    CT-TTAATCAGTGGGG TAAT CTCCACTGATTATTAG     TTAAACCAATCATTC  62 64
 CT43_CH4428 NONE
       secDF 4394987 .. 4395012 -  -7.7  -5.42514   CCACAAACGAAAAAA         GA-GATGCCTCA TAA TAAGGCATCATC         TTTTCTATACTTGCG 100 30
 CT43_CH4426 4393870 .. 4393913 - -14.2  -3.92324   GGTTGTAACACGAAA TCACCCCTTAACCTGT-TCAT TAT ACAAGACAGATTAAGGGGTGA CAATATAATGCAAAC 100 79
        recJ 4391506 .. 4391523 -  -2.7   -4.2349   TCCTCAGATCTAAAA             GGTTTGT AAAT ACAAATC              CTTTACCCTAACTGT  55 28
        apt1 4390901 .. 4390933 -  -6.9    -4.614   TTCAATTATACAAAA      GTACCCGCTCCTCTC CAA GAGATTCACGGGTAC      TTTTTATCACCGTAG  79 58
        relA NONE
         dtD 4388069 .. 4388111 - -13.9  -4.02733   CAAAACATACAACAA TGTATAAAAAAGAGAGGATT ATAT AACCCTCTCTTTTTTAT-CA ACACTATTTACTTTC 100 29
 CT43_CH4421 4387466 .. 4387501 - -14.8  -6.17669   AATAAAATAAAAAAA    CTCCCGCCTCTACTGT TTAA ACAGTAGGGACGAGAG     TATTATACCCGTGGT 100 297
        hisS NONE
        aspS 4384322 .. 4384352 - -18.6   -5.1675   TTATCCATTAAAAAA       GTCTAGATGGTTAT AGT ATAACCATCTAGAC       CCTATTCTTACTTCT 100 33
 CT43_CH4418 4383358 .. 4383382 - -14.5  -5.46276   AATATATATAAAAAA          GCATATATCCA AAA TGGATATATGC          TTTTCTTTTATTCTT 100 33
 CT43_CH4415 4380100 .. 4380116 -  -2.3  -2.66274   CGTTTCACAAGGAAT              TAAATGT AAA ACATATA              GCCCCCGTGATTTTC  40 8
 CT43_CH4414 NONE
        mnmA 4377750 .. 4377781 -  -8.1  -4.18018   TCGCTTTATGTAAAA      GAAACCTCTAACCG CTAAT CGGC-AGAGGCTTC      TCATTTATCCTAAAT  83 30
 CT43_CH4412 4376965 .. 4376988 -  -9.6  -2.84687   TTAATGAGCAGTACA          TCCCCCACCT TTTT AGATGAGGGA           TAACTACCCATTAAA  75 54
 CT43_CH4411 4374562 .. 4374607 -  -5.7  -2.72144   CTATGCGTTTGAAAG TTTCACTATATAATTTCACCT TGTT ACATGAAATCATACGGTGAAA TGTTTTCCACGTCCA  55 3
 CT43_CH4410 NONE
 CT43_CH4409 4374081 .. 4374100 -  -7.9    -5.626   GAGTGCATAAAAAAA            CTCCCTT GTCTAT AAGGGAG             TTTTTCACTTTATCG 100 47
 CT43_CH4407 4372251 .. 4372267 -  -3.7  -4.20783   ACCTTACTTAACAAA              GCTAAAA ACA TATTAGC              GACTGACGAAACGAT  61 377
        alaS 4369039 .. 4369065 - -12.4  -2.83345   CTTATATAGTAAGTA         TAGGGAGAAGAA CTT CTCCTCTCCCTA         CCATTGTACACTACT  90 47
 CT43_CH4404 NONE
 CT43_CH4403 NONE
 CT43_CH4402 4368001 .. 4368022 -  -5.9  -5.90231   ATAAATACAAAAAAA           GATGGAC TGTATGTC GTCCATC            TTTTCAGTACCTATT  95 39
 CT43_CH4401 4366705 .. 4366735 -  -6.2  -5.31275   TTTTACCACAAAAAA      GAGGGATGTGCGA CTTTTT TCGCT-ATCCCTC       CCCATTTCACTGTTT  84 32
 CT43_CH4400 NONE
 CT43_CH4399 NONE
 CT43_CH4398 NONE
         udk 4362766 .. 4362790 -  -7.2  -5.40474   ATCCCCCGAAAAAAA          GAGGAGTTCC ATATG AAAACTCCTC          CGCTTCCATTGTTAG 100 240
        greA 4362220 .. 4362241 -  -8.8  -6.04953   ATACAAATAAAAAAA           TCACTCGT TTTTAC ACGAGTGA            TTTTTTTATTATTTT 100 34
 CT43_CH4395 4360380 .. 4360396 -  -4.5  -4.58773   TTCATGAAATGAAAA              CAATTCA CTA TAAATTG              CAAGATTACTTTTCA  68 31
 CT43_CH4394 4359581 .. 4359632 -   -17  -2.60863   TAAATTAAAGAAATT GCGTTAACTAAAAAAGAGAAGCTCC TAA GGAGCTTCTCTTTTTTAGTTTA-GA GTTTGAACAAGTACT 100 16
 CT43_CH4392 NONE
 CT43_CH4391 NONE
        cysM NONE
 CT43_CH4389 4355698 .. 4355751 - -13.7  -2.95481   AAACATTTCACAAAT TAACATAATAAAAA-TGCACTGCT CCACATT AGCAGTGCATTTTTTATTACGCTA GCGCTTGTGCTAAAT 100 18
 CT43_CH4388 4352849 .. 4352867 - -11.7   -5.7946   TTTCCAACAAAAAAA             GAGCCGC TTTCT GCGGCTC             TTTTTTAATCATTAT 100 37
 CT43_CH4387 4352479 .. 4352511 -   -15   -5.8096   TACAAAAAACAAAAA      GCGCGACAAAAAGA TTCTT TCTTTTCGCCGCGC      TCTAGTTAACAATAT 100 40
 CT43_CH4385 NONE
 CT43_CH4384 NONE
 CT43_CH4383 NONE
 CT43_CH4382 4349044 .. 4349068 - -13.7  -5.71638   TAATAACTAAAAAAA          GCAGTAGACAA ATA TTGTCCACTGC          ATCCATATCATAACT 100 177
 CT43_CH4381 NONE
 CT43_CH4380 NONE
 CT43_CH4379 4347199 .. 4347219 - -14.1  -6.44931   AATAACAAAAAAAAA            GAAGCCTGT TAA ACAGGCTTC            TTTTTTATCCCCTTA 100 30
 CT43_CH4377 NONE
 CT43_CH4376 4345177 .. 4345220 -   -20  -3.61424   AAAAAGCAATTATAA GAAAATAAAAGGAGAAGCCT TTTT AGGCTTCTCCTTTTATTTTG AAATGGATACAATGT 100 102
 CT43_CH4371 4337995 .. 4338019 - -11.6  -5.31545   AATAACAGTAAAAAA          CTGCCTAAAA CGATC TTTTAGGCAG          TTTTTTATTCTTCTT 100 30
 CT43_CH4368 4336532 .. 4336549 -  -7.1  -3.93658   AATATCGTTAAATAA             GTTCTTT CCAG AAAGAAC              TTCCACAAAATCTTT  72 172
 CT43_CH4366 4335343 .. 4335367 - -17.3  -4.48869   GAAAAATAACATAAA          CGGGTATCTCA TTT TGAGATACCCG          TTTTCATATATTAAG 100 36
 CT43_CH4363 4331924 .. 4331942 -   -11  -5.26119   CTCCTAAAAAGAAAA             GTGAGGCA TTT CGCCTCAC             TTTCGCTCTTAATTA 100 38
 CT43_CH4362 4331360 .. 4331379 -  -7.9  -5.67967   ACCACTATAAAAAAA            GGTTCTC GCCAAT GAGAACC             TTTTTTGTACCATTT 100 79
 CT43_CH4360 4329676 .. 4329703 -   -10  -4.66833   TGTCAATTGCAAAAA        CAAGAAGATTCT ATTT AGAATCCCCTTG         TTTTTATAGTTAAAT  93 49
        rpmG 4329409 .. 4329428 - -10.8  -5.84381   TTATTAACAAAAAAA            GACTAGAG ATAT CTCTAGTC             TTCTACTTCGTCTCA 100 28
 CT43_CH4358 4327815 .. 4327840 -  -8.5  -5.69262   TTATAAAAATAAAAA         GAGTTATTTTC TTTG AAAAATAACTC          TTTTTACTTTACTTA 100 34
        sigK 4325982 .. 4326006 -    -8  -4.95547   TTTACAATAAGAAAA         GCAGCC-TATT TTAA AATATGGCTGC          TTCTAATACACTTTA  91 38
         psd 4324833 .. 4324852 - -12.2  -4.57341   AATGCCCTGTAAAAA            GAGCCATC CTAC GATGGCTC             TCGAATAAACAAGTA 100 113
 CT43_CH4353 NONE
 CT43_CH4352 NONE
        aroE NONE
 CT43_CH4350 4321471 .. 4321504 - -10.5  -2.98823   TTCCTTTTACATACA     GCAACTCTCCTTGGTT AGG AACGAAG-AGAGTTGC     TATTAATAAAAGTTC  83 103
        nadD NONE
 CT43_CH4348 NONE
 CT43_CH4347 NONE
 CT43_CH4346 4319178 .. 4319204 - -13.9  -4.37092   ATCTTCTTTATAAAA         CAAAAGCAACC TTCTC GGTTGCTTTTG         TTTTATTTGTTTTAT 100 37
       comEA 4317509 .. 4317521 -  -3.4  -3.65902   TGTAGTGTAGCGAAA                GAAG AAAAA CTTC                GTCAATCTTTTACGG  52 35
       comEB NONE
       comEC 4314134 .. 4314157 -  -7.4   -4.1021   TTTTACAAGTACAAA          GGAACAGGCT TTAT AACCCGTCCC           TTTATTTATATTAAA  74 442
        holA 4313016 .. 4313038 - -11.4  -5.76633   TTATATACAAAAAAA           GTTCATGCAC TAG GTACATGAAC           TTTTTTGTGTCATCA 100 38
         gpR NONE
 CT43_CH4337 4311018 .. 4311047 -    -8  -4.24002   TTTCAAATTTTAAAA       CGGTTGTCTTAC AAATCA GTAAAACAACCA        TCTCCCATGCTACTC  83 41
        lepA 4308993 .. 4309012 -  -6.4  -5.43414   ATTATACAGAAAAAA            GAAGCCGC ATAA ACGACTTC             TTTTTTATTTCAAAT  88 42
 CT43_CH4335 4308502 .. 4308518 -  -9.4  -5.26119   TTTCTAAAAAGAAAA              CCTCCG CACTC CGGAGG              ATTCTCTACTTCTCT 100 31
        hemN 4307302 .. 4307314 -  -4.9  -4.01158   AACGTCACGAAATAA                TGAAA CTT TTTCA                CGCCTATGGAACATT  62 44
        hrcA 4306092 .. 4306121 - -11.7  -2.74605   CCTCCTTAAAAGGTA       TTAGGTA-TCATGC ATA GCATGATTACCTAA       GCATTATATATTACA  87 87
        grpE NONE
        dnaK 4303576 .. 4303604 - -12.6  -5.02074   TCATTCGTGAAAAAA        GCCAAAGTCAAG GCACG CTTGACTTTGAC        TTTTTGTCATCTTAC 100 61
        dnaJ NONE
        prmA 4301226 .. 4301269 - -23.6  -2.80291   AATCACCTTAGTAGA GTTTCGTTCCTTTCGTAAGT CAAC ACTTACGAAAAGAACGAAAC ATTATCATTTTTCAT 100 109
 CT43_CH4328 NONE
 CT43_CH4327 4299067 .. 4299093 -  -9.5  -4.78326   CTTCAAATAAAGAAA        GCATGCAAACCG TTTC CGGTT-GCACGC         TCTTTTTTATGCGCT 100 32
        rpsU NONE
 CT43_CH4325 4298109 .. 4298150 - -14.2   -3.9461   TTTCCTTAATAAGAA CAATAAAAAAACGTCTCAT ACGAA ATGAGACGTTTTTTTAT-G CTAATAGCTGGATAA 100 21
        yqfC 4296634 .. 4296666 -  -5.7   -4.0162   CTTTTACAGGATAAA      GAAGAAAAACTTC ACAAATG GAAGTTTCACTTC      AATCACCTTTTTTTT  67 24
 CT43_CH4322 NONE
 CT43_CH4321 4294319 .. 4294347 -  -8.3  -5.00895   CTTATCATACAAAAA        GAAATGATCCT GACAAAT AGGATCATTCC        ATTTTATCATATGCC  91 19
 CT43_CH4320 NONE
 CT43_CH4319 NONE
        dgkA 4291152 .. 4291180 -  -6.8  -2.62515   AAGGCCCTTACAGCA        CTTCCAAAGCTT AATAA AAGCTTCGGAAT        GCAACTATACCATAT  59 30
        cdd2 NONE
         era 4289741 .. 4289773 - -14.4  -3.88001   GTTCATAAAAACCAA      TAATCAGTGGATGA ACCAA CCATCCACTGATTA      CAACTTTACTCTATT 100 41
 CT43_CH4315 NONE
        recO 4288669 .. 4288684 -  -8.2  -4.72386   GAAAGTATGTAAAAA              GGACCG TATA CGGCCC               AAAATTATATTTGAA  85 30
 CT43_CH4313 NONE
 CT43_CH4312 4287083 .. 4287107 - -13.7  -5.11613   ACACGAGCGAAAAAA          GCACATTCACC TTT GGTAAATGTGC          TAAAACATTTTTTGG 100 25
 CT43_CH4311 4286498 .. 4286509 -  -2.2   -3.4811   CTTTTTACAAGAAGA                GTAG CAAG CCAC                 ATATACTGTTTGATC  46 124
 CT43_CH4310 NONE
        dnaG NONE
        sigA 4283225 .. 4283250 - -13.5  -5.92399   TAACAAAATAAAAAA         GTTTACTTCAC AAAG GTGAAGTAAAC          TTAAAAAATAACCTA 100 38
        cccA 4282480 .. 4282507 - -11.4    -5.186   GAAAATATAGAAAAA        CAAGCCCTTTGC ATAA GCAAAAGACTTG         TCATACGGAACTTTA 100 38
 CT43_CH4306 NONE
 CT43_CH4305 4280486 .. 4280525 - -11.7  -4.40692   GTGAAAAAAGAACAA  TAATAAAAACCGTTGCC TATATG AGCAACGGTTTTTATTT   TTCTTATACAAATGT 100 29
 CT43_CH4302 4277199 .. 4277218 - -10.8  -5.52384   GCGGGATTAAAAAAA            GATAAGGG AAAC CCCTTATC             TTTTTTTATTGCTAT 100 95
         nfo 4276128 .. 4276151 - -15.4  -4.36411   CAGCAATTACTAAAA          TAAGGAGGGG AAAT CCCCTCCTTA           TTGCGCTTTAATTTT 100 23
 CT43_CH4299 4274804 .. 4274822 - -11.8  -5.22006   CTATTATAACAAAAA             GCAGAGAA AAA TTCTCTGC             TTTCGAAAAATATTC 100 51
 CT43_CH4298 NONE
 CT43_CH4297 NONE
 CT43_CH4296 4272610 .. 4272635 - -14.1  -5.08824   TTTCTACGTAAAAAA         GCTCGTCAGTT ATAT AACCGACGAGC          TTTTACTTTGCACAT 100 28
       sodA1 4268912 .. 4268931 -   -10  -5.43487   AAAGCATAGAAAAAA            GCTAGGAG CTCT CCCCTAGC             TTTTTCTATATTTAT 100 46
 CT43_CH4290 4267486 .. 4267507 - -10.2  -2.79968   TATGTAATGTGAAAG           GGACACCT TCATAC AGGTGTCC            TCACTGCTGTCTTAC  79 76
 CT43_CH4289 4265281 .. 4265306 - -14.9  -6.04378   AAACCATAAAAAAAA         GCACACTATCT TTTC AGATAGTGTGC          TTTTTTACAACTTTT 100 41
        phoX 4264045 .. 4264064 -  -3.6  -3.69323   TCATTATGAGCCAAA            GATGAAAA CCCC TTTCCACC             CTGACATTACCTTAT  52 32
        pstC NONE
        pstA NONE
        pstB 4261337 .. 4261356 - -12.2  -4.80417   GATAAAAATAAGAAA            TGCCCTCT GTTA AGAGGGCA             TTTTCTCTTAGCTTT 100 50
        phoU 4260404 .. 4260426 -  -8.5  -5.52384   TTTTGACTAAAAAAA           GCAGGTGAT TTCTC ATCACCTAC           TTTCATTCCTACTCA 100 34
 CT43_CH4283 NONE
 CT43_CH4282 4257494 .. 4257523 -  -8.7  -5.83226   AATCGAATAAAAAAA       GAAACAGTAGGAA AATA TTCCTACTGCTTA        CTTTGTTTCACGGTG 100 242
 CT43_CH4281 4256846 .. 4256859 -  -3.1  -3.48593   TATTTGTCTATACAA               GCTCA TTTA TAAGC                ATTGTTCCTTTTTCT  48 4
 CT43_CH4280 NONE
        glcK 4255493 .. 4255514 - -14.5   -4.9792   GATTTCACACAAAAA           GAGGAAGGG TTCC CCCTTCCTC            TTTTCATATTTCAAA 100 43
 CT43_CH4277 NONE
 CT43_CH4276 4253326 .. 4253351 - -14.9  -5.14965   AGTCGTATTAAAAAA         CAAGACACAGT ATAT ACTGTGTCTTG          TTTTTTATATTGTTA 100 30
 CT43_CH4271 NONE
        metH NONE
       murG2 4243452 .. 4243466 -  -4.3  -2.54371   TTGGTTAAATAAATC               GTAAC AGTTA GTTAC               CCTTTATTACCAGAA  48 18
 CT43_CH4268 4241538 .. 4241558 -  -2.5  -2.89742   TCGAATCCTTACATA            CGCATCCAT AAC ACCGATACG            ATAAACTTAACTAAA  42 161
       murG2 4240711 .. 4240736 -   -12  -4.26903   TTCACCCTACTAAAA         GAGGCATGAT TGTTTC ATCATGCCTC          TGAAATATTTTGAAT 100 17
 CT43_CH4266 NONE
 CT43_CH4265 NONE
 CT43_CH4264 4239206 .. 4239226 - -12.7  -5.48825   TATTATGTAAAAAAA            GAACGTGAT TGA ATCACGTTC            TTTTTTCATTATATG 100 34
 CT43_CH4262 4238358 .. 4238379 -  -6.7  -5.14985   TTAAACATAGAAAAA           GAGAATACA ATAA TATATTCTC            TTTCCTCAAATATAT  88 66
 CT43_CH4261 NONE
 CT43_CH4260 4237870 .. 4237895 -   -12  -5.68023   TCATAATGAAAAAAA         GACGCTAACA TACAAT TGTTAGCGTC          TTTTTTATTCCGTTC 100 70
 CT43_CH4256 NONE
 CT43_CH4255 4233034 .. 4233046 -    -2  -3.81488   GCCCCCTAAATAGAA                TTCA TCATT TGAA                ACATTGGCATAATCA  50 3
 CT43_CH4254 NONE
 CT43_CH4253 NONE
 CT43_CH4252 4231913 .. 4231923 -  -2.6   -5.9663   AAAGAGCAAAAAAAA                 TATT GAT AATA                 GAAACAGACATACAA  82 68
 CT43_CH4251 NONE
 CT43_CH4250 4231111 .. 4231127 -  -2.3  -3.93166   CTTCTAAAAAATCAA              TTCAATT TAC AATAGAA              ATCCCTGGTTTTTCT  50 56
 CT43_CH4249 4230290 .. 4230321 - -11.2   -5.7946   TGTTTAATAAAAAAA      CGTTTTGTTCTT-AT ACT ATGAAGAACAAAACG      TAACACTCGCTTTTA 100 38
        aroK NONE
 CT43_CH4247 4229418 .. 4229457 - -18.9  -3.73072   AATCCGTGCAGTAAA  CAAAGATCCCCTAGTGT ATTACG ACACTAGGGGATCTTTA   TTTTGCTAGACATAT 100 50
 CT43_CH4245 4228203 .. 4228227 - -13.7  -5.71712   CCTTATACAAAAAAA          TAAGAGCAGCC ATT GGCTACTCTTA          CTCGCTCACATATTT 100 23
 CT43_CH4244 4227951 .. 4227973 - -12.1  -3.63515   TTCTATCTTGAAGAA           GCTCCTTCT GCTTT AGAAGGAGC           CTCTTTTGAGCTATT  95 48
        gcvT NONE
        yqhJ NONE
        yqhK 4221119 .. 4221138 -   -10  -5.71712   CTCCATACAAAAAAA            GAACCCGC CGCA GCGAGTTC             TTCTTTTGTTATTCT 100 43
 CT43_CH4238 NONE
 CT43_CH4237 4220364 .. 4220385 -  -8.8   -5.7946   TTGGCAAGAAAAAAA           GACCAACA TTTTCC TGTTGGTC            TTTCGTATATGTATC 100 39
 CT43_CH4236 NONE
 CT43_CH4235 NONE
 CT43_CH4234 4218391 .. 4218405 -  -2.1  -3.85698   TCTCCTCTCTATAAA               TCACG TGCTC CGTAA               ATTTTAATTGTAAGA  50 4
 CT43_CH4233 NONE
 CT43_CH4232 4217086 .. 4217105 - -12.2  -3.67597   GTCGTTATTGAAGAA            GGTGCCTT TTTT AAGGCACC             TTTTAAAATTCTCTT  95 28
 CT43_CH4225 4213131 .. 4213151 -  -9.8  -5.48787   ATAACATACAAAAAA            CTAGCTGA ATAAA TCAGCTAG            TTTTTTCATTTCATC 100 31
 CT43_CH4223 4211703 .. 4211728 - -10.5  -5.67063   TTTACTATAAAAAAA         TAAGAGGTGGC AATT GCCATCTCTTA          TTTTTTATAATTCCA 100 23
        splB 4208449 .. 4208484 - -13.6  -3.09772   CTAAATCTGCAAAAG    TGAAAAGAACCTGTAT TCAA ATACAAGTTCCTTTCA     TGTAAAATATTGAAT 100 23
 CT43_CH4218 4207889 .. 4207907 -  -6.7  -5.67283   AATTGAAATAAAAAA             GGAAACG CCATC CGTTCCC             CTTAATTACTTTTCT 100 27
 CT43_CH4217 4207174 .. 4207210 - -11.7  -5.31158   CAAAAAAAGTAAAAA    GAAAGACCGTGCTTCCT TTT AGGAAATACGGTCTTTT    TTTATACTTTGAAGC 100 7
 CT43_CH4214 NONE
        aroQ NONE
       pepQ1 NONE
         efp 4202892 .. 4202915 - -15.4  -5.60993   TTTCCTATAAAAAAA          GCACTCGTGA ATTA TCACGAGTGC           TTTTCTACTATGCAC 100 33
 CT43_CH4208 NONE
    spoIIIAA NONE
    spoIIIAB NONE
    spoIIIAC 4199851 .. 4199861 -  -5.4  -2.60219   GACAATTTGTATAAT                 TTCG ATT CGAA                 CCGCCTCCTTTACTG  52 35
    spoIIIAD NONE
    spoIIIAE NONE
    spoIIIAF NONE
    spoIIIAG 4196929 .. 4196941 -  -4.9  -3.06276   GTACAACAACTAAAC                TTAAC ATC GTTAA                TAACCAAACTGTTTG  52 68
        accB NONE
        accC NONE
 CT43_CH4197 4193244 .. 4193265 -  -6.6  -5.42265   TGAAACGATAAAAAA           GATGCCTA TGTTAC TAGGCACC            TTTTCATTCTTACAC  93 35
        nusB NONE
        folD NONE
        xseA NONE
        xseB NONE
        ispA 4189022 .. 4189050 -  -8.1  -5.52986   AGGCGATGAAAAAAA        TAGCCGCTAACAC GAA GTGATAACGGCAA        TGTAATCTACATATA 100 129
         dxs NONE
 CT43_CH4190 4186102 .. 4186125 -  -8.2  -4.84274   CAATTACAGCAAAAA          GAGGAACAAC ATAT GTTATTCCCC           TTTCCCTTTTTGTTT  90 17
      argR_1 4185478 .. 4185517 -  -9.5  -4.19587   TGACCAATAAAAATA  TCTTGTTCACTTCCCAC TTTACG ATGGAAAGCAAACAAGA   TTTTTTGTTACAACA  90 33
 CT43_CH4188 NONE
 CT43_CH4187 4183514 .. 4183533 - -10.8    -5.626   CATTTGAGAAAAAAA            GCTATCCA TTAC TGGATAGC             CTCTGCTGTCTGTTT 100 14
      spoIVB 4182090 .. 4182113 -   -14   -5.0916   TTTTCAACAGAAAAA          GCGAGCTAAT ATGT ATTAGCTCGC           TTTTTTCTCTTGATC 100 17
       spo0A 4180897 .. 4180924 -   -10  -5.62288   TCAACAAAATAAAAA        GACCAACGAATC ATAA AATTCATTGGTC         ATTGAGTGAAAAGTT 100 124
 CT43_CH4184 4179870 .. 4179900 -  -4.7  -4.25104   GTCCGCTTATCAAAA       GCACTAGGTGTTC CACTT GAACAACTCATGC       ATATGCCGCAGCACA  65 333
 CT43_CH4182 4179023 .. 4179045 -  -9.2  -6.02919   TTATAAATAAAAAAA           TGAGACCG TTACACG CGGTCTCA           TTTTTTTATTGGCAA 100 23
 CT43_CH4180 4176525 .. 4176557 - -13.7  -2.62184   GCTTTTTGTATACCA      TGCAATAAATTGCAC GGT ACGCAATTTATTGCA      TGCTATTTTTTGCAT 100 18
        yqiS NONE
 CT43_CH4178 4174266 .. 4174291 -  -7.5  -3.73399   TAAATTCAAAAGGAA         GTGGAAACCTC ATAA GAGGTAACCAC          ACCTTTTGTAAAAGT  73 54
         buk NONE
       bfmbC NONE
      bfmbAa NONE
      bfmbAb NONE
 CT43_CH4173 4168311 .. 4168344 - -14.1  -3.71448   GATGAAGAAATAAGA     TGATAAAAAGCTCGC ATAA GCGAGCTTTTTATTA      ATATACAGATGTATT 100 23
 CT43_CH4172 4166790 .. 4166815 - -16.3  -5.51402   ATATATGTAAAAAAA         GCTGGTTCGTT TAAA AACGAACCAGC          TTTTTTTACTTAACG 100 31
 CT43_CH4171 NONE
 CT43_CH4170 4165382 .. 4165393 -  -7.2  -3.73262   AAAAAATTAGAAATA                CGGG ACAT CCCG                 GAGGGGAAGGTTACT  70 63
 CT43_CH4169 4164906 .. 4164941 - -22.2  -2.79796   TTGTATTTCAGTATA    GAAAAGGTGTTAGAGC AATT GCTCTAACACCTTTTC     TTTAATGACCACGAT 100 27
 CT43_CH4168 4164337 .. 4164370 - -20.4  -5.82036   ATAATAAATAAAAAA     GGCGGCACATCCAC TTGATT GTGGACGTGCCGCC      TTTTCTCTTATTTTT 100 40
 CT43_CH4167 4163347 .. 4163367 -  -5.4  -3.98312   CACAGAAAAGTGAAA            GGCAGC TTATTTTCC GCTGCC            AAACCATTTCTTCAC  64 11
 CT43_CH4166 NONE
 CT43_CH4165 4161890 .. 4161908 - -11.8  -5.67063   GCTAGTATAAAAAAA             GGATGACA CAA TGTCATCC             TTTTCTACTTATTAT 100 59
 CT43_CH4164 NONE
 CT43_CH4163 NONE
 CT43_CH4162 4159960 .. 4159997 - -18.1   -2.6927   ACTTTTTACACATGA   CAAAATAAACCATCTCG ACAT CGAGATGGTTTATTTTA    TATAAAACACAATCG 100 18
 CT43_CH4161 4159052 .. 4159082 -    -4  -5.53436   ATACAAGACAAAAAA       CAGATGGTTTAC ATGTCTA GATAACCATCTG       CTTTCTATTACTCAT  81 33
 CT43_CH4160 4157803 .. 4157830 - -15.8  -5.54338   GAATCAAAATAAAAA        GCGTGTAAATCA CAAT TGATTTACACGC         TTTTTCTATTCTATT 100 39
 CT43_CH4159 4156238 .. 4156268 -    -7  -4.01603   GAGTTAAATAGGAAA       GGTGTCATGA TTTTTACTACT TCATGACACC       TTCTACATAAACTTA  71 28
 CT43_CH4156 4151515 .. 4151544 - -15.3  -3.41878   TCTCGTAATCTATAA       TAAAAAAGCACTG GTTA CAGTGCTTTTTTA        TTTATACTTATTTAG 100 23
         rnz 4150109 .. 4150127 -  -7.5  -5.76633   TTAGACATAAAAAAA             TGGTAAC CCATT GTTACCA             TTTTTTACAAAATTA 100 41
 CT43_CH4153 NONE
      sdaAB2 4148795 .. 4148805 -  -2.4  -2.60496   TGCGTTCCGAAACAT                 GGTG TGT CCCC                 CCTGCAATTAATCCA  40 33
      sdaAA2 4147875 .. 4147898 - -11.1   -6.4275   GAAAAATAAAAAAAA          GGAGCTCAA GTTTAT TTGAGCTCC           TTTTTCTATAATTAC 100 43
 CT43_CH4149 NONE
 CT43_CH4148 4145081 .. 4145108 - -15.8  -5.77677   GAAAACAATAAAAAA        TAGGAGATTTCC ATAT GGAAATCTCCTA         TTTTTTACTTAATGA 100 23
        argC NONE
        argJ NONE
        argB NONE
        argD NONE
      argF_1 4139449 .. 4139484 -  -6.2  -5.37345   TTTAACCATAAAAAA    CACCCCAGTTTTTA TTCGTATC TAGCAACTGGGGTG     TACATCCTTTAGGAA  88 34
 CT43_CH4141 4139200 .. 4139216 -  -4.5  -4.28488   ATGTAAATATAGAAA              TTTCAGA ATA TCTAAAA              ATCTTCATGTTACAT  62 117
 CT43_CH4140 NONE
 CT43_CH4139 NONE
 CT43_CH4138 4137182 .. 4137208 -  -2.9  -5.20216   TAGATTACTAAAAAA         CCTTGAAAGAC ATATA GCCAATCAAGG         TTTCAATAGAATTTT  71 155
 CT43_CH4137 4136328 .. 4136342 -  -5.8  -3.08812   CCCTTTCTAATAAAC               GATTAT CGT ATAATC               TTTTTAAATGACTCT  57 323
 CT43_CH4136 4135780 .. 4135812 - -16.5  -3.90318   CTATCATTGCACAAA      GTACTCCATGATGGT ACA ACCATCATGGAGTAT      GTACTTTTTAATAGC 100 119
 CT43_CH4135 4135534 .. 4135564 -  -5.4  -5.46706   ACCTTAAAATAAAAA       GCACTTGTTGTC TTTAATC GACACCCAGTGC       TTTAAGTTCATCTGT  84 8
 CT43_CH4134 NONE
 CT43_CH4133 4133452 .. 4133481 - -16.7  -2.84636   TTGAAAACAAACGTA       TAAAGCTGCTTCT AAAT AGAAGCAGCTTTA        TGATTCGTAATAATT 100 296
        cpdB 4129408 .. 4129428 - -10.5  -5.31072   ATAATATAACAAAAA            GGATTACCA AAT CGGTAATCC            TTTTTATATTTCTCG 100 42
 CT43_CH4128 4126995 .. 4127022 - -14.4  -5.02476   ATAGTTCTTAAAAAA        GAACAACTTATC ATAC GATAAGTTGTTC         TACTTTCCATGCTGT 100 25
        bioA NONE
        bioD NONE
        bioF NONE
 CT43_CH4124 NONE
 CT43_CH4123 NONE
        bioB 4121083 .. 4121104 -    -3  -5.64274   TTATTTACAAAAAAA           GCAAACCC TTTTAC AAGTTTGC            TTTTTCATCTATCTT  77 39
 CT43_CH4121 4120598 .. 4120611 -  -8.1  -5.72616   ATGGACATAAAAAAA               GAGGC TGCG GCCTC                TTTTTATTTTTTCAC 100 29
 CT43_CH4115 4115766 .. 4115783 -  -9.9  -5.85425   GAAAGAAACAAAAAA             CAGGCTT GCAT AAGCCTG              TTTTTTTATTGCGCT 100 31
 CT43_CH4113 4113846 .. 4113862 -  -2.3  -4.07568   CTGCTCTCGTCAAAA              TAACACC TGC AATGTTA              TTTTGCTTCAGCATA  52 454
 CT43_CH4110 4110219 .. 4110250 -    -6  -4.96762   TATACATCATAAAAA      GGATACT-CGTTCTT CCA ATGAACATAGTATCC      TTTTTTTTAGTTATC  80 32
 CT43_CH4108 4108045 .. 4108068 -  -7.5  -5.01732   AAGCTCGTCAAAAAA          TGACCAGTG GTATTT CACTGATCA           TTTTTTTATTATTTA  89 34
 CT43_CH4107 4107475 .. 4107500 -  -2.6  -5.14477   TATATAGCTAAAAAA         TAGCGTGAAC TCATTC ATTCACGTTA          TTTTTTCTCCATTCT  69 10
 CT43_CH4106 4106499 .. 4106525 - -10.2  -4.03183   ACCGATAAAACAGAA         GACTGCCTCC AGTATTA GGAGACAGTC         TTTTTTATAACGTAT  90 30
 CT43_CH4103 4104696 .. 4104714 - -14.6  -5.33921   AAATCAATTAAAAAA             CACTCGCC TTT GGCGAGTG             TTTATTTTTGTAGTT 100 27
      spoIIM 4103343 .. 4103359 -  -2.3  -5.11254   AACAATAAAAACAAA              TTGATAA TTA TTCTCAA              AAAGTATTTATTTTT  65 33
 CT43_CH4099 4102778 .. 4102803 -  -8.4  -5.65927   TATTCAAATAAAAAA         CCTCTTCCTA GATAAA TAGGAAAAGG          TTATTTTTCATCCGT 100 26
 CT43_CH4098 NONE
        xerD 4101562 .. 4101580 - -11.8  -5.54894   AATCTATGAAAAAAA             GAGCATAG TAA CTATGCTC             TCGGATGAAACTGTT 100 18
 CT43_CH4096 4100658 .. 4100687 - -15.3   -4.8048   TCTTCATATTAAAAA       TAAAAAGTAGCTC TAAA GAGCTACTTTTTA        TTTTACTTCTATTGT 100 23
        deoB NONE
 CT43_CH4094 NONE
        pyn2 4096969 .. 4096990 -  -8.7  -5.69023   AAAATAGTAAAAAAA           GCCAAGGAG AAAT CTCCTCAGC            TTTTTTTTATTACTT 100 35
        corA 4095952 .. 4095971 -  -9.2   -5.4505   TTGGTTAAGAAAAAA            CACCGGGG AAAT CCTCGGTG             TTTTTTACTTAAACC 100 30
 CT43_CH4089 4093236 .. 4093262 -  -5.9  -5.48213   TATTCAAAAGAAAAA        GGATAGG-AGTG CTTT CGCTTCCTATCC         TCATTTATTATAATA  86 33
 CT43_CH4088 4092603 .. 4092627 - -15.9  -3.53012   TCTTGGCGTGTGAAA          TAACCTCCTCT TAA AGAGGAGGTTA          TTTTACATTCTCTCT 100 23
        dacF 4087808 .. 4087826 - -13.2   -4.7219   CATACGAATAGAAAA             GCGGCAAA ATA TTTGCCGC             TATTTTGATGTTGAA 100 25
     spoIIAA NONE
     spoIIAB NONE
        sigF 4086082 .. 4086109 - -12.2  -5.63504   AACGGCATAAAAAAA        TCGAATAGACAA TTAT TCGTCTATTCGA         TCTTTCATCTGTTTT 100 10
 CT43_CH4079 NONE
 CT43_CH4078 4084301 .. 4084325 - -13.7  -5.60993   TTTTTCATAAAAAAA          CATCTGCACCA TTT TGGTACAGATG          TTTTTTACTTATGCC 100 34
      spoVAA NONE
      spoVAB NONE
 CT43_CH4075 4082724 .. 4082734 -  -2.6  -3.06696   CCCTCCTTTAAGACA                 TAAA AAT TTTA                 AAGGTATACCTTATT  43 7
 CT43_CH4074 NONE
 CT43_CH4073 NONE
 CT43_CH4072 NONE
      spoVAF 4079277 .. 4079300 -  -6.8  -5.86061   TTTTACTAAAAAAAA          TAAACGGG TGTATAAT CCCGTTTA           TTTTTGTCTTTTTAC 100 23
 CT43_CH4070 4078370 .. 4078392 - -15.6  -5.28481   TATTCAAGTAAAAAA           GAAGCCCGCC AGT GACGGGCTTC           TTTTTTATACAAGTA 100 30
 CT43_CH4068 4076846 .. 4076861 -    -9  -5.95286   ATTAAAAATAAAAAA              GAGAGC AAAA GCTCTC               TTTTCCCTTACCTTA 100 38
        ribT 4076013 .. 4076048 - -12.2   -5.4111   AACAATTACAAAAAA    GAAAGCAGAGATAA-TA AAC TACTTATCCCTGCTTTC    ACGAATGTATATTTT 100 24
        scpA 4074291 .. 4074314 -  -3.9  -5.25893   ATACACATCAAAAAA          CCGAATCACA ATCAA TGCG-TTCGG          TTCAATATTTCTTCT  74 111
        scpB 4073648 .. 4073666 - -11.8  -5.76633   TGATATACAAAAAAA             GCTTAGCA AAA TGCTAAGC             TTTTATTTCGATATC 100 28
 CT43_CH4063 4072660 .. 4072676 -  -4.3  -4.57569   TCATTTTTCCAAAAA              GGGACAG TAT CCACCCC              TAATATAGAAATCAC  68 37
        nagA NONE
        nagB NONE
 CT43_CH4060 4069794 .. 4069824 - -12.1  -5.18726   TGCTCATAATAAAAA      TACGACTCATTCCT TATA AGGA-TGAGTCGTA       TTTTTATTTCTTTAC 100 87
        glcT 4067725 .. 4067774 -  -3.7  -3.79295   GAGGAAAAAAAGATA GAACGATAGCTATACAAAGGG-TA GTA TATCCCTTTCTCTAGCTTACATTC CTTACTTTTCTCCAC  54 243
        ptsG 4066637 .. 4066648 -    -3  -3.71848   TGGCGCTACGAATAA                GAAT GAAA ATTC                 AAGTGGCTCTGTAAT  50 88
        ptsG 4065530 .. 4065559 -    -8  -3.50572   ATCTATTGTATATAA       TAGGCGATGT TCGGTCAACC ACATCGCCTA        TTATAATTATAAACA  73 56
       ptsH1 NONE
        ptsI 4063439 .. 4063466 -   -10  -5.36441   TTCTCATAGAAAAAA        CCTGAGACCGATT TCA AATCGA-CTCAGG        TTTTTTTATTGGTTA 100 38
 CT43_CH4052 4062374 .. 4062396 -    -7  -5.77677   CAAAATAATAAAAAA           CGAAGGTAAC TAC ATTGCCTTCG           TTTTTTTATTTCCTG 100 265
 CT43_CH4050 4060106 .. 4060124 - -11.8  -6.44931   AACAATAAAAAAAAA             TCGCAACA ATT TGTTGCGA             AAAATTACATTTTTT 100 30
 CT43_CH4049 NONE
 CT43_CH4048 NONE
 CT43_CH4047 4057654 .. 4057687 - -17.1  -3.86944   CTTATAATGACTAAA     TAAATAAAAGTCCTC AAAT GAGGACTTTTATTTA      TTTTCTTCTAGAAAT 100 19
 CT43_CH4040 4051509 .. 4051530 -  -9.5  -5.10064   TCTAACATAGAAAAA           CCTCTTTCC ACTA AGAAAGAGG            TTTGAAGTTTATCTT 100 259
        mtnK NONE
        mtnA 4049214 .. 4049235 -  -3.7  -5.64274   TTAGGCATAAAAAAA           CAAGCTATT ATGT ATTAGCCTG            TTTTTCAAATAATGA  79 11
 CT43_CH4037 4048966 .. 4048994 - -13.4   -5.4505   CTGCGCAATAAAAAA        TAAAGTTTGCTC AAGAA GAGCAAACTTTA        TTTTTTATTGCGAGG 100 23
 CT43_CH4035 NONE
 CT43_CH4034 NONE
 CT43_CH4033 4045800 .. 4045819 -  -6.5  -6.02919   CTACAAAGAAAAAAA            CAGTAAC CCTCAT GTTACTG             TTTAAAACAACTTGT 100 296
 CT43_CH4031 4044691 .. 4044706 -  -6.8  -5.95539   TTTTAAAGAAAAAAA              GGAAGC TTTC GCCTCC               ATTTTTTCACCTTTA 100 38
 CT43_CH4030 4044144 .. 4044163 -  -6.5  -5.29716   TTAATATAATAAAAA            TAGAAGG AATTAA CCTTCTA             TTCTGTCAGTGCATA  84 23
 CT43_CH4029 4042822 .. 4042841 - -12.2  -5.64274   TGAGTCATAAAAAAA            GAAGCAGC AATA GCTGCTTC             TTTTTTATAGTGCTT 100 30
 CT43_CH4027 NONE
 CT43_CH4026 4040288 .. 4040316 -  -6.1  -6.11392   AAAGAAATAAAAAAA        CAGTCAGCA TAATATTTGAG TGCTGACTG        TTTTTCTTACATTAT 100 53
 CT43_CH4024 4038361 .. 4038383 -  -4.7  -5.80248   TAACATACAAAAAAA           CCGTCCACA TATAT TGAGGGCGG           TTTTCATTATTATAC  90 35
        malL 4035256 .. 4035280 - -15.9  -5.15969   TGGTAACCCAAAAAA          TCCTTATGCCA AGG TGGCATAAGGA          TTTTTCTTATTTCAA 100 32
 CT43_CH4020 4031867 .. 4031894 - -12.1  -3.55368   ATGGAAGGGAGAGAA        TTCGTGCCCCT CATATT AGAGGCACGAA         TTTCACCTTATTTTT  91 33
        malC NONE
        malD 4029654 .. 4029682 - -14.8  -4.36262   ATAGGGAGATGAAAA        GAAAAATGGGAC GTAAT GTCCCATTTTTC        ATCCTTTTGTACCTC 100 24
        malR 4028364 .. 4028384 - -12.7  -5.26875   TTTCTAATGAAAAAA            GCTAAGAGT TAA ACTCTTAGC            TTTTTTATGCATAAT 100 30
       kinB3 4025283 .. 4025301 -  -4.6  -5.60556   AATATAAAATAAAAA             GTTACC TTCCATC GGTAAC             TTTTATTCCTTATTT  83 28
        comI NONE
        comJ 4023398 .. 4023425 - -12.9  -5.21236   AACGCATAACAAAAA        TGGGTTATCCT TTTCTC AGGATAACCCA         TTTTTTATTCTTTAC 100 30
 CT43_CH4005 4017129 .. 4017147 -  -6.1  -5.86976   CTACAAAATAAAAAA             TGTACAT ATGCA ATGTACA             TTTCTGCTTAAGCTT 100 370
 CT43_CH4004 4016316 .. 4016355 -  -9.7  -3.60234   TCATATATTTTTAAA  GACTTTTATTACAAA CGCAACGTTT TTTGTAATAAAAGTC   AAAAAAATGTTACAA  82 80
 CT43_CH4003 4015100 .. 4015136 - -18.3  -5.72616   ACTTATACAAAAAAA    TAAAACAGTTTGGCCAA GTC TAGGCCAAACTGTTTTA    TTTTTTCTCTTCTTT 100 23
 CT43_CH4001 4012928 .. 4012939 -    -3   -2.5937   AGACATCCGTACAAC                CTAA TGTT TTAG                 TTCAAATAACAAGTT  42 14
       ppk_2 4010669 .. 4010701 - -10.2  -5.32882   TATGAGTAGAAAAAA     GTAAAAACCTCTTAT GTCC ATAAGAGG-TTTTAC      TTTTTTTCATTATTC 100 35
 CT43_CH3997 4008174 .. 4008196 - -12.1  -5.80727   AAAAATAATAAAAAA           TCCCTTCAG TTTTC CTGAAGGGA           TTAGAGGGGTAAAAT 100 192
 CT43_CH3996 4006872 .. 4006891 - -10.8  -5.88476   AAAACAAACAAAAAA            TGCACGAA TCTC TTCGTGCA             TTAAAATAAAACATC 100 26
 CT43_CH3995 4006130 .. 4006168 - -14.3  -3.16822   ACAACAACTACTCAA  TATAGAATAGGAATAGGT AAAT ACCTATTCCTATTCT-TA   TCCCGCTATTTGTAG 100 78
 CT43_CH3993 4005398 .. 4005419 - -14.5   -5.3671   AATAGAACTAAAAAA           GGTACTGCC ATGT GGCAGTACC            TTTTTTATATGTATC 100 39
 CT43_CH3992 4004921 .. 4004948 -  -4.4  -4.38774   AAGACCATATCAAAA        TTTA-AATGTCTC TCT GAAACATTGTAAA        ATTTATGTGCACCGT  65 119
 CT43_CH3991 4004381 .. 4004393 -  -2.7  -3.60657   TATAAAAAAATTCAA                CCTAT TTA ATAGA                TGTAATATTCAGTTT  48 81
 CT43_CH3990 4004116 .. 4004133 -  -2.7  -5.69473   TACAGCACAAAAAAA             GACTACCA TTC CGGTAG-C             GCTTAATACCCTTTA  75 28
 CT43_CH3989 4003489 .. 4003515 -    -8  -5.86965   ATGCACGAAAAAAAA         GTGACTTCTTCG TTT CTATGAAGTCAC         TTTTCTCACGTTATC 100 36
 CT43_CH3988 NONE
 CT43_CH3987 4001654 .. 4001681 - -11.4  -4.87665   CTCTATCTATAAAAA        GCGTAAGAGC CCATTTAC GCTCTTACGC         TTTTTTTACTTTTTA 100 38
 CT43_CH3986 4000340 .. 4000381 - -14.7  -3.97331   AAGTTAGTCAAATAA TTAATAATGAGCAGTGGCT AAAA ACCCCCTGCTCATTATTAA  AACAGTCCAATTAAC 100 144
 CT43_CH3985 NONE
 CT43_CH3984 3998601 .. 3998625 - -10.1  -5.33331   GAAATATAAGAAAAA          GGACAATGC TATGAAG GCATTGTCC          TTTTCTTTTCTCTTA 100 38
 CT43_CH3981 3995329 .. 3995367 - -22.1  -3.39327   CCTCTAGAGCGATAA   TAATAAAGAGGCGGAAG TTAAT CTTCCGCCTCTTTATTA   TGAAATGGGTTCCAT 100 47
        pdhA NONE
        pdhB 3991794 .. 3991833 - -18.2  -3.11272   CATTATTATGGAATA  TGTACAAAAGAAACCAGC ATGT GCTGATTTCTTTTGCACA   TGAAAAACTAAAAAT 100 40
        pdhC NONE
        pdhD 3989001 .. 3989031 - -21.4  -5.50723   TGATGAAAATAAAAA       TAGCCCCTCTCTTA CAA TAAGAGAGGGGCTA       TTTACATTACTTAAA 100 41
 CT43_CH3973 3987731 .. 3987754 -  -2.4  -5.65927   TATTCAAATAAAAAA          CAGCCATATT TATA AGTACGACTG           TTTCACATTAATTAT  75 37
 CT43_CH3972 NONE
 CT43_CH3971 NONE
 CT43_CH3970 3987049 .. 3987068 - -13.6  -5.18357   CAATTTATTAAAAAA            GCGCCTAC ACAT GTAGGCGC             TTTTTCTTATTATTA 100 38
 CT43_CH3967 3983957 .. 3983976 - -10.8  -4.51378   ATCGATAGTAGAAAA            CGGACAAT ATAT ATTGTCCG             TTTTTAGTTGTTATC 100 80
 CT43_CH3965 3982878 .. 3982897 -  -8.6  -5.36441   TGTTCACAGAAAAAA            CGAACCCT TTAT AAGGTTCG             CACCAACTAATTTTT 100 57
 CT43_CH3964 3982014 .. 3982040 -  -7.4  -4.70626   CAATAACGCTAAAAA         GTAAGAAGCT TATACAT AGCCTCTTAC         TTTTTTTGTGGCTCT  80 22
        typA 3979812 .. 3979832 - -14.1  -5.90231   ATAAACATAAAAAAA            CAGCTACCT TAA AGGTAGCTG            TTTTTTTTTATGCTT 100 33
 CT43_CH3961 NONE
 CT43_CH3960 3979065 .. 3979106 -  -8.4  -4.12456   AGACGATTGGTAAAA TGTAAATAAGTCCTTA-CT CATAT AGATAAGGACTTATTTATA TTTTTCAGGCTCACG  79 17
 CT43_CH3958 3978052 .. 3978087 -  -9.2   -3.3506   TTTAAATTTGTAGAA    CAAGGGTTTCATCCATA AAA TATGGACG-AACCATTG    TTATAATTATATGTA  77 199
 CT43_CH3957 3976656 .. 3976687 - -14.6  -3.72984   TTACAATTATTTAAA      GAAAAGGAGTGAGC TTAA GCTCACTCCTTTTT       ACAATAAATCTGCTG 100 24
 CT43_CH3955 3975674 .. 3975696 - -13.6  -5.42975   TTATACAAATAAAAA           GCTCAAACTA ATT TAGTTTGAGC           CCCCTTATTTGAACC 100 43
 CT43_CH3954 3974365 .. 3974421 -   -15  -3.12666   TCATATTTAAAACTA CTTG-AAAATAAAAAACACATCCTGCT CTAA AGCACGATGTGTTTTTTATTTTACAAC TACAAGATGTGGTCC 100 14
         pyc 3970594 .. 3970623 - -14.5  -4.15222   ATTTTTTGCAATAAA       GAAAAGAGCTGTA TTTA CACAGCTCTTTTC        TTTATTTTAGTGATC 100 32
 CT43_CH3951 NONE
        ctaC NONE
        ctaD NONE
        ctaD NONE
        ctaE NONE
        ctaF 3964149 .. 3964173 - -10.8  -3.27771   CCCATAATATGAAGA         GGGAGC-TGTG ACAA CACAAGCTCCC          TTATATTTCACTTTT  85 40
 CT43_CH3945 3963177 .. 3963196 -  -8.6  -5.77571   ACTAAAAAAGAAAAA            GCGTATGG AATC CCATACAC             TTTTTTTACTTAGTT 100 31
        amiF 3962532 .. 3962549 -  -8.5  -2.71144   GACTTCTTGGAATGA             CAGTTCA CTGT TGAACTG              TAAGTTCGACAATGC  69 54
 CT43_CH3943 NONE
        amiF 3959175 .. 3959211 - -15.4  -3.23019   GGATAAAGGCAAAAT    TAAAAATGAGCCCGGT GCAAT ACCGGACTCACTTTTA    TCAAGCTGCCTAATG 100 104
 CT43_CH3938 3956050 .. 3956087 - -11.3  -6.13503   TAGTAAGAAAAAAAA   GGCGCATGGTTCGCCTA TTTT TAGACGATTCATGCACC    TTTTTTTCTGCTATT 100 128
 CT43_CH3936 3955257 .. 3955268 -    -3  -2.94232   TCCTTTTTAAATAAT                CAAT CTCT ATTG                 TAACAAAAGTTCTGC  43 67
 CT43_CH3935 3954629 .. 3954642 -  -3.9  -3.87325   AAAAGAAAGATATAA               TGAAA CTAT TTTCA                CACTATATCCGTACA  56 44
        ylbF 3954085 .. 3954101 - -10.1    -5.055   CCAACTTCTAAAAAA              CGGGGTA CAT CACCCCG              TTTTTTTACAACCAC 100 18
 CT43_CH3933 3953668 .. 3953691 - -13.2  -5.27477   ATTTCAATTAAAAAA          TCCCCCGCTA AATT TAGCAGGGGA           TTTTTTCTATTAGCT 100 35
 CT43_CH3931 NONE
        coaD 3951699 .. 3951718 -  -9.3  -5.38958   ACGTATAAAGAAAAA            CCCCGTT CACTTT AACGGGG             TTTGAAACTTTTCTT 100 12
 CT43_CH3928 NONE
 CT43_CH3927 3948544 .. 3948562 -  -9.6  -5.25803   AATTCCTATAAAAAA             CCTCTCTA TTT CAGAGAGG             CTTTTTCCTTATCCA 100 12
 CT43_CH3925 3946625 .. 3946637 -  -3.3  -2.55668   TATTTTCATATGAAG                GCCTG AAC CAGTC                TTCCGATTATTTGTC  44 32
        rpmF 3946370 .. 3946397 - -15.8  -6.10295   TTAAGACAAAAAAAA        TAAACGCAGAAG ATAT CTTCTGCGTTTA         TTTCCCTGCAATTAC 100 37
 CT43_CH3923 3945730 .. 3945788 - -20.8  -3.93401   GTTACAAATGAAGAA TCGGCTTAAGAAATAAAAAAACAGCTGT ATA ACAGCTGTTTTTTTATTTCTTAAGCTTC TCTAACTTCTCAGTC 100 10
       panE2 3944045 .. 3944058 -  -5.3  -2.56596   TCTCTCACCAATCCA               CATTG TAGT CAATG                TTTCACTTAAAAGCA  51 52
 CT43_CH3920 3942362 .. 3942391 - -13.1  -5.13741   TCAACGGAATAAAAA       TAAAATCCTGCTC CAAA GAGCAAGATTTTA        TAGTTTTATAACATG 100 23
        mraW NONE
        ftsL NONE
 CT43_CH3917 3938450 .. 3938497 -  -3.6  -2.90763   GTTACATTTGATACA CGCATATCGGAACAAGCC TCCCTTACGCCT AGCTTGTTCCAATATATG CTTGTACTTATTTAA  45 64
 CT43_CH3916 3936399 .. 3936436 - -10.8  -3.14132   TCTTTTTTTCAGTAA   GCAACACATTACCTCCT ATATA AGGAGGTAA-GTGCTAC   TGGCCTATTTATGAC  84 127
        murE NONE
        mraY NONE
        murD 3932484 .. 3932519 - -17.9  -3.05384   TTTTGCCCTATGTAA    CAAAACATCAGTAGG TGTTAG CCTACTGATGTTTTG     ATTTACTTTATATAA 100 33
       spoVE 3931325 .. 3931343 -  -9.6  -4.86133   CACACATACGAAAAA             CCCTGTCT TAT AAACAGGG             TTTAGTAGCGAGAAT 100 27
        murG 3930067 .. 3930077 -  -2.4   -2.6006   AAGTTAGGCGAGAAT                 CGGG ATG CCAG                 TAAACATCCGATTAG  40 95
        murB 3928955 .. 3928979 - -14.4  -4.21607   CCTATGTAACATAAA          GAACGGCATG TTCCT CATGCCGTTC          TTATCTTCTTATTAT 100 74
 CT43_CH3909 NONE
        ftsA NONE
        ftsZ 3925239 .. 3925254 -  -6.1  -5.93252   TTTAAAAACAAAAAA              GGAGC ATGAAA GCTCC               TTTTTTTATCGTCTA 100 31
     spoIIGA NONE
        sigE 3923305 .. 3923344 - -13.8  -4.08221   CCTAATACAACTAAA  TAGAATAAGACCAGCC TACATAAC GGCTGGTCTTATTCTT   CACACCATTTTATTA 100 25
        sigG 3922383 .. 3922406 - -15.4  -5.05601   TATTACATATAAAAA          GGTCTCACCA TAAT TGGTGAGACC           TTATCCTTGAATCGT 100 26
 CT43_CH3903 NONE
 CT43_CH3902 NONE
 CT43_CH3901 NONE
 CT43_CH3900 3919835 .. 3919859 -  -2.1  -3.25786   GATAGCAGAACTTAA          CACCATTAAAA CTG TTGTCATGGCG          TATTACCACCTCTTT  44 28
 CT43_CH3899 3919585 .. 3919601 -  -2.3  -3.07816   TGCTCATGTATTTAA              CCTCTTA CTA TAAGAAA              TAGCTGAACAAACTG  42 16
 CT43_CH3898 3918782 .. 3918799 -  -4.1  -4.36914   TTTTCTTCGACAAAA             TAGGAGG ATTT CCTTCTA              AAAAACCAATCATTT  62 35
      divIVA 3917921 .. 3917957 - -20.4  -5.52096   AAACGGAATAAAAAA    GAGACTTTCTCATCCC AAAAA GGGACGAGAAAGTCTC    CCGCGGTACCACCCT 100 281
        ileS 3915071 .. 3915093 -  -9.2  -5.84381   CCATCAACAAAAAAA           CTGACTGC ATGAATA GCAGTCAG           TTTTTTATTATTTTA 100 33
 CT43_CH3895 NONE
        lspA NONE
 CT43_CH3893 3912967 .. 3912991 - -10.8  -5.63504   AATGGTATAAAAAAA         GTCCTCTCAGC GTGT GC-GAGAGGAC          TTTTGAAAAAAGGGT 100 153
        pyrR 3912267 .. 3912290 -   -14   -5.7946   TTTGCAATAAAAAAA          CTCTTTGTGC CTGT GCACAAAGAG           TCCTATACTTTCGTA 100 107
        uraA 3910856 .. 3910877 - -10.2  -4.08042   CTTAGCATAAAAATA           CCCTAGTC GTGTAA GACTAGGG            TGCAAGGAAGAAGCC  90 81
        pyrB NONE
        pyrC NONE
 CT43_CH3888 NONE
        carB NONE
        pyrK 3903535 .. 3903549 -  -2.1  -2.62515   AATCTGTTCATAGTA               CAACC TCCCC GATTG               GAAATACTGGTCCGT  40 3
        pyrD NONE
        pyrF NONE
        pyrE 3901238 .. 3901259 -   -13  -5.55695   CAATAATATAAAAAA           CGACCGCG TTCCCC CGCGGTCG            TTTTTTTCATGTTAC 100 37
 CT43_CH3879 3897784 .. 3897803 -  -4.9  -3.93659   AGTAAAATGAGGAAA            TGCCGCC GAATAA GGTGGCA             TTTTCTTTTATTCAT  60 328
 CT43_CH3876 3894564 .. 3894600 - -13.4  -3.78087   AATTAAAAGCGTAAA   TACAAAAATGCGTTGCT TATA AGCAACGCATTTTT-TA    TATTCGTTCACACTA 100 38
 CT43_CH3874 3889964 .. 3889989 -  -8.4  -4.90013   TAACTCAATGAAAAA         GGTAATAGAG ACAAGG CTCTACTACC          TTCTGTAAATTATAT  90 60
 CT43_CH3873 NONE
 CT43_CH3872 NONE
         gmk NONE
        rpoZ 3887791 .. 3887818 - -10.8  -5.40072   CCTTTCGTAAAAAAA        TAACAACCTACT TGTA AATAGGTTGTTA         CCGTTACATAGAAAA 100 79
       coaBC NONE
        priA NONE
        def1 NONE
         fmt NONE
         sun NONE
 CT43_CH3864 NONE
 CT43_CH3863 NONE
 CT43_CH3862 3877399 .. 3877451 - -19.5  -2.90075   GCTTTTTGAATCATA TATTTTTGCCTGCTATACCGTCCAC TTT GTAGACAGCATAACAGGCAATAATA ATAATAATAATAAGT 100 53
 CT43_CH3861 NONE
         rpe 3875611 .. 3875636 - -11.9  -4.62069   CTTCCATTGTAAAAA         GGCAATCTGCC ATTC GGTAGATTGCC          TTTTTTACATATTTT 100 83
 CT43_CH3859 3874735 .. 3874748 -  -8.1  -6.22691   TAATAATAAAAAAAA               GAGCC GATA GGCTC                TTTTTTTACTATAAC 100 224
 CT43_CH3857 NONE
 CT43_CH3856 3871955 .. 3871980 -  -8.3  -5.43514   AAAACAAGTAAAAAA         GAGCCTCACTA TTAG CAGCAAGGCTC          TTTTCTCTCTTCAAT 100 141
        recG 3869727 .. 3869753 -  -3.9  -3.16033   TAATCATTAAAAGTA        GAATGCAACAAA AATT TTTGTTG-ACTC         CCTTTAATCGAGCTT  48 29
 CT43_CH3854 NONE
        plsX NONE
        fabD NONE
        fabG NONE
        acpP 3866052 .. 3866071 -  -7.8  -4.01137   GATATAAGCCAGAAA            GCCCCGCT AAAA AACGGGAC             TTCACTTAAGCATTA  77 38
         rnc 3865259 .. 3865287 - -15.4  -3.36327   TCATTCTATGCACAA        GGAATCCCCCTC ATTCA AAGGGGGATTCC        TTATAGTTGTTCTTT 100 26
         smC NONE
        ftsY 3860541 .. 3860559 - -10.3   -4.9725   ATTTTTATAGAAAAA             GAAGCGG AAATA CCGCTTC             TTTCGCTTATACTTC 100 32
 CT43_CH3846 NONE
         ffH 3858671 .. 3858681 -  -2.6  -3.00022   TTTATTTCACACAGA                 TAAT TAT ATTA                 GCAAAAAGACTATTG  43 83
        rpsP 3858368 .. 3858386 -  -3.9  -2.71364   TCATTGCCTCAATTA             CTTACCT TGTTT AGATAAG             TGGAATTTCTCCATG  46 4
 CT43_CH3843 3858091 .. 3858113 -  -9.8  -5.12707   TTAAATGTTAAAAAA           GGGAGAGGAA TAA CTCCTCGCCC           TTTTTACGTTTATTG 100 35
        rimM NONE
        trmD 3856676 .. 3856698 -  -4.9  -3.06315   GGAACATCGTTAATA          CG-GCTACTG ATTT CAGTAGCACA           AATGTTATAATAGCA  52 80
        rplS 3856227 .. 3856252 - -13.4  -4.65838   TATAGATTGGAAAAA         GGGAGCTTGT GCATTT ACAAGCTCCC          ATACATGTCTTATCG 100 35
       sipS2 NONE
        rbgA 3854680 .. 3854697 -  -5.5   -5.2853   TATCCAAAAAGAAAA             GACGCAC AAAC GCACGTC              TTATACTTCTTCTAT  80 26
        rnhB 3853849 .. 3853870 - -10.3  -5.79595   TGCCAAAATAAAAAA           TAAGCTGTA TATT TACAGCTTA            TTTTTGAATCATATC 100 23
        sucC NONE
        sucD 3851549 .. 3851590 -   -11  -5.96894   ATGTAAACAAAAAAA GTGTAAAAAGACACCCTC AAGTAA GAGGGTGTCTTTCAACAG  ATTAATAGTTTTTGC 100 27
         smF NONE
        topA 3848397 .. 3848416 -  -8.6  -5.40072   TCTTCCCGAAAAAAA            TGTGAGCA GTTA CGCTCACA             TTTGTTGTTCTTCTT 100 21
         gid 3847012 .. 3847042 - -14.2  -4.18488   ACTCACCTCAATAAA       GGCTACTAAATCGT ATC ACAACTTAGTAGCC       TTTGCAAGAAATTTA 100 42
        xerC NONE
        hslV 3845483 .. 3845495 -  -3.4  -2.96184   GAGTAAAATGTAAAT                GCAT ATAAA ATGC                CTCCCTTACGATTCT  45 39
        hslU NONE
        hslU NONE
        codY 3843208 .. 3843227 - -12.2    -5.626   CATTGCACAAAAAAA            CTCTCCTC GATC GAGGAGAG             TTTTTTATAAATTAG 100 37
        rpsB 3842148 .. 3842176 - -11.1  -5.07567   TTATACCTTAAAAAA        GGTGATAAAAGGC CGA ACCCCTTATCACC        TTTCCAACTTTGTTA 100 38
         tsf 3841170 .. 3841188 - -13.2   -5.0538   CTTTATTTTAAAAAA             GGGAACAC AAT GTGTTCCC             TAATCTGTATTAGTT 100 35
        pyrH NONE
         frr 3839807 .. 3839827 - -11.9   -4.7416   CTAAAAGTGTAAAAA            GACCCCCTT AAG AAGAGGGTC            ATATTTGCGAAGTTA 100 47
        uppS 3838900 .. 3838921 -  -5.9  -2.76693   AAACCGTAAAAGGCA           CGCCACCGTA TAT TACGATGG-G           AATGAATAGCGCGGC  55 91
        cdsA NONE
        dxr2 NONE
        rasP 3835669 .. 3835694 - -11.2  -4.29738   TTACACGCAGTAAAA         CCCCTCACCT CGAATT AGGTGAGGGA          TTTTATTCTACGAGC 100 69
       proS2 3833897 .. 3833927 -    -9  -4.55697   ACGTTTACAAAGAAA       GAGAAGGTACCCCA TTA CGAGGTACCTCTTC       TTATTTTAAAATATT  90 26
        polC 3829355 .. 3829372 - -11.3  -3.96093   GATAGTAACACGAAA             GAGTGGG TTTC CCCACTC              TCTTTTTCACAAAAT 100 113
 CT43_CH3814 NONE
        nusA NONE
 CT43_CH3812 NONE
 CT43_CH3811 NONE
        infB 3824853 .. 3824876 - -11.8   -2.9175   TACACTCGAATGAGA          GTGAAGCGAC AATC ATCGCTTCAC           TTCTTCCATAACGTA  88 14
 CT43_CH3809 NONE
        rbfA 3824193 .. 3824214 - -11.7  -5.08824   TTTGCATTGAAAAAA           TGGATAGAC AAAT GTCTATCCA            TTATTCTTCACGTTT 100 26
        truB NONE
        ribF 3822133 .. 3822147 -  -2.7  -3.20435   CCAATTACCTAGCAA               GCGTC GGTGA GTCGC               AATGCCAAGCAATGG  44 68
        rpsO 3821789 .. 3821818 - -15.9  -3.06501   TATATTTTTACCTAA       CAAAAAAGCGGGA ATAT TCCCGCTTCTTTG        ACTATCGACGTAAGC 100 27
         pnp 3819500 .. 3819514 -   -10   -5.9218   TACATAACAAAAAAA               GCCAGT TTA ACTGGC               TTTTACTTATTGCTG 100 32
 CT43_CH3803 NONE
 CT43_CH3802 3817082 .. 3817114 - -15.1  -5.96219   TATGGATAAAAAAAA      TAACCTTCTCTCATT TAA AAAGAGAGAAGGTTA      TTATCAGATACATCA 100 51
 CT43_CH3801 3816732 .. 3816750 -  -9.6   -5.4251   TGTAGATACAAAAAA             GATGACCA AAA TGGCCATC             CTTCACTCCGAATTT 100 28
      spoVFA NONE
      spoVFB 3814817 .. 3814832 -  -6.2  -3.03072   TAAAAGAAACACAAG              TCATTC AAAT GAATGA               GGCTGCATTACGCAA  56 437
 CT43_CH3797 3813144 .. 3813181 -  -3.7  -4.48877   TAAATATGGACAAAA   TAACCCAT-CAATTAAAG CAA CTTTAATTGGAAAGATTA   CTAGAAAAATTTCTC  63 185
 CT43_CH3792 NONE
 CT43_CH3791 3809879 .. 3809893 -  -8.6  -4.03995   TTTCGTATAAAAAGA               GAGGAA CTA TTCCTC               AACGTTTTCTTTTAC  82 17
 CT43_CH3790 NONE
 CT43_CH3789 3808895 .. 3808914 -  -7.9  -2.57132   CTTTCTGGTCATAAC            GACAAGC ACAGTG GCTTGTC             CAAATGATTTATATA  64 83
 CT43_CH3788 NONE
 CT43_CH3787 NONE
      dnaB_1 NONE
 CT43_CH3785 NONE
 CT43_CH3784 3805401 .. 3805418 -  -4.1  -3.33815   ACTTTGTCGAAGTAA             GTTGAGA GTGA TCTCAGC              TTTTTTTTATTTGTC  49 40
 CT43_CH3783 NONE
 CT43_CH3782 3804859 .. 3804877 -  -4.6  -3.01712   TTCCTCTTTTCAAGA             GTACATAT TCG AGATGTAC             TCTTTTTGCATTACT  50 59
 CT43_CH3781 3804219 .. 3804240 -  -8.7  -3.61398   TTCTTTTTTCAACAA           GCAGTTAGC TTTT GCTAGCTGC            TCTTTTAATTAAAAT  77 400
 CT43_CH3778 3802484 .. 3802535 - -12.6   -5.0916   TTTTCAACATAAAAA GGACACCTATTC-CTAAAACAGC TTTAATT GCTGCTTTAATGAATTGGTGTCC TCTAGTTTTCTAGCC 100 50
 CT43_CH3777 NONE
 CT43_CH3776 NONE
 CT43_CH3775 3801228 .. 3801258 - -10.6   -5.4505   TCCTTGAACAAAAAA       GCAATGATTAGATT TTA AACCTAGTCATTGC       TTTATCCATTGCATC 100 2
 CT43_CH3774 3799897 .. 3799931 -  -4.6  -5.19879   CTCCAAATATAAAAA    TCCACTG-C-ATTTAA TTACT TTAAATAGTCAGTGGA    TTTTTATTTTTAGCG  77 165
 CT43_CH3773 3799084 .. 3799099 -  -6.8  -5.45802   CCTCCAAAATAAAAA              GCACCC ATTC GGATGC               TTTTTTCATTAAGTA  93 356
 CT43_CH3772 3798387 .. 3798409 - -10.7   -5.7946   CCTTGAACAAAAAAA           GAGTGCTTT TCTTC AAAGCACTC           TTCCAAAGGAATTTA 100 400
 CT43_CH3771 NONE
 CT43_CH3770 NONE
 CT43_CH3769 NONE
 CT43_CH3768 3797151 .. 3797162 -    -3  -3.32022   TGCCCCATAGAGCAA                TTTC TAAT GAAA                 TATTTTAAGGGGGGG  46 60
 CT43_CH3767 NONE
 CT43_CH3766 NONE
 CT43_CH3765 NONE
 CT43_CH3764 NONE
 CT43_CH3763 NONE
 CT43_CH3762 NONE
 CT43_CH3761 NONE
 CT43_CH3760 NONE
 CT43_CH3759 NONE
 CT43_CH3758 NONE
 CT43_CH3757 NONE
 CT43_CH3756 NONE
 CT43_CH3755 3785776 .. 3785803 -  -6.4  -5.07652   CTCTCTAAAATAAAA        GAAACCCAAACCT AAA AGGC-TGAGTTTC        TTTTTTCTTCTCTAT  82 9
 CT43_CH3754 NONE
 CT43_CH3753 NONE
 CT43_CH3752 3779519 .. 3779537 -  -4.5  -5.88565   TTGACAATAAAAAAA             GACCAGC TTATG GCTGCTC             TATTTGCGTTGTATT  87 14
 CT43_CH3750 NONE
 CT43_CH3749 3776817 .. 3776836 -  -2.7  -5.25803   AACTTGTATAAAAAA            GCCGTCC AATTAA GGGCGAC             TTTTTTTATACACCA  69 56
 CT43_CH3744 3773368 .. 3773378 -    -4  -3.39948   TGATAACAAAGCTAA                 TGAA TTT TTCA                 TTTTTCTTCTATTAT  51 95
 CT43_CH3743 3773051 .. 3773079 - -11.9  -3.45054   TTCTATAACTTAGAA        TCAGAAGGAGTAT ACA ATACCCCTTCTAA        TCTTAATAACGTTAA  91 103
       dapG2 NONE
       dapA2 3769787 .. 3769809 - -10.7  -5.85737   ATATCAATAAAAAAA           TGACCTAGT TTCAC ACTAGGTCA           TTTTTATTAACGAGG 100 32
 CT43_CH3739 3767196 .. 3767215 - -12.2  -6.20267   TTAAAAAGAAAAAAA            GATCACCC ATAA GGGTGATC             TTTTTTATACTTCCA 100 30
 CT43_CH3738 NONE
 CT43_CH3737 3766091 .. 3766109 -  -7.4  -4.55908   AATAAACAGAAGAAA             GCAGCC TACTCAT GGCTGC             TCAACCGTCTTGTTT  80 83
 CT43_CH3736 3763544 .. 3763567 - -12.6  -5.40625   ACACTATATAAAAAA          GCCTAATTGT AAAA ACAATTAGGC           TTTTTTTAAGAACTT 100 31
 CT43_CH3735 NONE
 CT43_CH3734 3761090 .. 3761118 - -17.7  -2.99947   GAAGTTTTATACATA        CAAAGGTTAGTTC TAT GAACTAACCTTTG        CTATTTCTCTATTTA 100 38
 CT43_CH3733 NONE
 CT43_CH3732 NONE
 CT43_CH3731 3757428 .. 3757447 -  -7.8  -5.09225   ATTCTATGTAAAAAA            GCCCACAC TAAT GTGCGAGC             TTTTTTATACTTATA  89 47
 CT43_CH3730 NONE
 CT43_CH3729 3754648 .. 3754687 - -14.6  -4.13903   CACACAACTAAATAA  TACCCTCATCTTACAATT TTTC AATGATAAGATGAGGGTA   TCTTTAAAATGTTAT 100 37
        fabG NONE
 CT43_CH3727 3753534 .. 3753558 - -17.3  -5.74122   TATTATACAAAAAAA          GTAGAGAGGAG AAT CTCCTCTCTAC          TTTTACTTATGTTGT 100 28
 CT43_CH3726 NONE
 CT43_CH3725 3751685 .. 3751701 - -10.9  -5.47218   GTTCATCGAAAAAAA              GTCATCG AAG CGATGAC              TGTTATTGTGCAGGT 100 28
        pgsA NONE
        cinA 3749790 .. 3749817 -   -10  -5.71983   TTAACTATAAAAAAA        GCTAGAAGAAAC TTAT ATCTCTTCTAGC         TTTTTATATAAATGA 100 10
        recA 3748595 .. 3748621 - -16.8  -5.20154   ATAGAAGGTAAAAAA         TAAAAGACACGG GAC CCGTGTCTTTTA         TTTTTTAATCTTGAA 100 30
 CT43_CH3721 3746558 .. 3746580 -   -10  -5.80817   TCCAACACAAAAAAA           TAAAGTGGTA TTT CACCACTTTA           TTTTGCGTATTCCAC 100 23
 CT43_CH3720 NONE
      spoVS2 3745174 .. 3745202 - -19.1  -4.91109   CCTCCATTATAAAAA        CAACCTGTTTGCA TAC TGCAAACAGGTTG        TTTAAAACTTAACGA 100 34
 CT43_CH3718 NONE
 CT43_CH3717 NONE
 CT43_CH3716 3741358 .. 3741376 -   -11  -4.96848   TTTTGCACATAAAAA             GGTTGCCA AAT CGGCAACC             TCCTCTTCTTACATT 100 39
        miaB NONE
 CT43_CH3714 3738975 .. 3738995 - -12.7  -5.96521   ATCAACTAAAAAAAA            GAGATGTCA ATA TGACATCTC            TTTAACAACCACAAT 100 27
        cotE 3738293 .. 3738327 -   -16  -2.79878   GCCACTTATGTAAAG     TAAAAAGCTAGGAAGA ACT TCTCCCTAGCTTTCTA     TTACTCTTCTTCTGC 100 26
        mutS NONE
        mutL 3733468 .. 3733504 - -15.4  -2.99204   AATTAAATCTACATA    TTAAAAGGGAGCAACA GTAAA TGTTGCTCCCTTTTGA    AAAGTAATTTTATTC 100 44
 CT43_CH3710 3730707 .. 3730733 -  -3.8  -3.08992   ATCTAGCTTAATATA         CATACTAACC ACCTCAG AGTCAGTATG         GAGAATCCAATTGAA  48 56
 CT43_CH3709 NONE
        dnaI 3728676 .. 3728696 -  -2.7  -3.76186   CATGTACAAAATCAA            TCATTTT CTTTGCT AAAATGA            TCTTTAATTCGATAG  48 1
 CT43_CH3707 3727537 .. 3727584 - -15.9  -2.81519   CAGAAAAATAATCTA TATATGAAAAAGGGAGCAACT TATTAC AGTTGCTCCCTTTTTCTTTTA TTCTACGCTTGTTTC 100 23
 CT43_CH3703 3720551 .. 3720570 - -10.8  -4.03085   TTAGAAAAATTTAAA            GGAACTTC ATCT GAAGTTCC             TTTTGCTTATTTTAT  93 32
 CT43_CH3702 3719370 .. 3719392 - -10.7  -5.46706   ATTGGAAAAGAAAAA           GAAGCGATA TATTT TATCGCTTC           TTACTCTCATCATCT 100 41
 CT43_CH3701 NONE
 CT43_CH3700 3717023 .. 3717048 -  -9.8  -5.86609   TTAAAAAAATAAAAA         GCAACTGATC ACTTAG GACCAGTTGC          TTTTTTCACACGATA 100 46
 CT43_CH3699 3716566 .. 3716577 -  -4.4  -3.57144   TTTCTTATCCGTAAA                TGGA TATA TCCA                 AAATGGTTCTTTTTC  56 104
 CT43_CH3698 3715030 .. 3715042 -  -2.7  -2.96216   TTTCACTATCACACA                TCCAT ATT ATGAA                ATTTCATTTAGCGTG  42 19
 CT43_CH3697 NONE
 CT43_CH3696 NONE
 CT43_CH3695 3713484 .. 3713501 -  -4.8  -5.27709   GGATAAAAAAATAAA             GAGACC ATTATA GGTCCC              TTCTTAAGCATACTC  79 29
 CT43_CH3693 NONE
 CT43_CH3692 NONE
 CT43_CH3691 NONE
        murG 3708224 .. 3708245 - -11.7  -4.90217   CAAATATAGTAAAAA           GGAAAGAAG ATAC CTTCTTTCC            TTTTGTTTTTCTATT 100 51
 CT43_CH3688 3704092 .. 3704112 -  -5.4  -2.53164   TTAGCTATCACTAAT            CGGGCT TTTACAGGC AGCCCG            CCCCCACCTAATTTC  51 156
 CT43_CH3687 3703415 .. 3703449 -   -11  -5.08824   TTTCTATTCAAAAAA     GACTTTGCTATAAAAG TAA CTTTTACAACAAAATC     CATGCAACTAATTTT 100 39
 CT43_CH3686 3702757 .. 3702790 - -15.5  -2.62929   TAATACAAATAAATC     CACCCTATTTACGAC TCTC ATCGCAAATAGGGTG      TTTCTGTTTTTATCT 100 60
        pepT 3700629 .. 3700660 - -16.8  -4.37502   AGTACTATATTAAAA      GAACCAAGTAGCAC ATTC GTACTACTTGGTTC       TTTTTTACGCTTGCT 100 30
        exoA 3697662 .. 3697693 -   -11  -5.29385   AACTGAATTAAAAAA      GAAGTATCCGCCTA ATGT TAGATGGATACTTC       TTTTTTTAGAAATTT 100 31
 CT43_CH3679 NONE
 CT43_CH3678 NONE
 CT43_CH3677 NONE
 CT43_CH3676 NONE
 CT43_CH3675 3692677 .. 3692717 - -16.6  -3.90922   ATTGCCTTTAAACAA TA-AGGAAAAAAGGTAAGC AATT GCTTACCTTTTTTCCTATA  CGTAACTAATAAACC 100 21
 CT43_CH3673 3690739 .. 3690764 -  -9.9  -4.84527   TCTACATATTAAAAA         GGTTATGGAATG TCT CAT-CCATAACC         TTTTTAAGCTCAATT 100 92
 CT43_CH3672 3690198 .. 3690230 - -14.3  -4.07537   AATAAAGTGAAACAA      GAATAAGCGGGGA TTACCCG CCCCCGCTTATTC      TTCGTCTATAATGTT 100 93
 CT43_CH3671 3689642 .. 3689664 -  -8.5  -5.95539   GGGTAAACAAAAAAA           CAAGCCAGT TAAAT ACTAGCTTG           TTTTTACGCTTTTGA 100 29
 CT43_CH3670 3689209 .. 3689238 - -11.7  -4.33105   TAATTATTAGCAAAA       TAAATCGTACTTC ATTT AAAGTACGATTTA        TTTCCATATCTAAAA 100 45
 CT43_CH3669 3686686 .. 3686706 -    -7  -5.85737   ATACGAACAAAAAAA            CAATACTT ATTCA AAGTATTG            TTTTTTAATTCTATT 100 61
 CT43_CH3668 3686093 .. 3686118 - -13.5  -5.07971   TAAAATAATGAAAAA         TATCCTTCTCA TTTA TGAGAAGGATA          TTTTTTTCATAACAT 100 12
 CT43_CH3665 3683669 .. 3683696 - -11.5  -5.80727   AAAAATAATAAAAAA        CAACAATAGGT TATAGG ACCTATTGTTG         TTTTTATTTACCGTA 100 100
        gabP 3680917 .. 3680931 -  -4.3  -3.24725   AAAATTAGAAAATTA               GAATC GAACA GATTC               CTCATTCTTACTTTT  52 8
 CT43_CH3662 NONE
 CT43_CH3661 3680238 .. 3680266 - -10.5  -6.11392   AAACAAAGAAAAAAA        TCCTTCTTAATAA AAC TTCTTAAGAAGGA        TTTTATCGCTTTATT 100 59
 CT43_CH3660 3679555 .. 3679574 -   -10   -5.7946   TGCTTAATAAAAAAA            TCCCAGCC TACA GGCTGAGA             TTTTTTTATTGATAA 100 31
 CT43_CH3659 3678251 .. 3678284 - -12.7  -5.66989   TAAACAGCAAAAAAA     GAAACCTATTCGATC AAAC AATCAAATAGGTTTC      TTTTCTAAATTCACT 100 40
 CT43_CH3658 NONE
        fruB NONE
 CT43_CH3656 3674573 .. 3674598 -  -9.8  -5.06414   TTTTTGTAATAAAAA         GAGAGCAGCT ACTAAA AGCTACTCTC          TTTTTATTTGTTATT 100 36
 CT43_CH3655 3673275 .. 3673304 -  -9.3  -4.94222   AATAATCCATAAAAA       GCGGCTGCTTACA TAAT TTCAAGCAACCGC        TTTTTATATTAATAT  95 48
        miaA NONE
         hfq 3671553 .. 3671596 -   -25  -4.99035   TTAGCCATAGAAAAA CTGCACCCCCAATTGTTAGAC TGT GTCTAACAATTGG-GGTGCAG TTCAAACTCGCTCTT 100 67
 CT43_CH3651 NONE
 CT43_CH3650 3669731 .. 3669742 -    -3   -3.7732   TCCCTATAGCAACAA                TTGT TGTA ACAA                 ACAATATTCAGCAAA  52 474
       spoVK 3666687 .. 3666716 - -10.8  -5.04597   ACTTATACACAAAAA       TAGACGCACAGT TTATGT ACTGTGCGTCTC        CTCTTCGAGCATCAA 100 8
 CT43_CH3644 NONE
 CT43_CH3643 3663152 .. 3663169 -  -9.1  -5.21709   TTTTATACGAAAAAA             GCTGCCG ATAT CGACAGC              TCCCCTTTAAGAAAT  95 32
        glnR NONE
        glnA 3661194 .. 3661218 -   -13  -5.28481   TAGGGAATTAAAAAA          CCCTTGATAC GAGTT GTATCAAGGG          TTCAAGCCTCTTAGT 100 36
 CT43_CH3640 NONE
 CT43_CH3639 NONE
 CT43_CH3638 3658869 .. 3658906 - -14.5  -5.51353   TAAAAATAATAAAAA   GAAGATAATTACCTTAT TTAT ATACGGTAATTATCTTC    TTTTTTGTATTTTGA 100 67
 CT43_CH3636 3657418 .. 3657429 -    -3  -3.24146   CCTTCTAATCAAAAC                TGAT TATT ATCA                 TACAATAGTTACTCT  46 34
 CT43_CH3635 3657134 .. 3657150 - -12.3  -6.02919   TTACAAATAAAAAAA              GATGGGC TTC GCCCATC              TTTTAATTTAATTTT 100 28
 CT43_CH3631 NONE
 CT43_CH3630 NONE
 CT43_CH3629 NONE
 CT43_CH3628 3650248 .. 3650264 -  -5.1  -5.69068   TAAAAACATAAAAAA              GCATCTA ACT TCGATGC              TTTTCAAATAAGTTA  85 38
        tkt2 3647947 .. 3647965 -  -9.6  -5.04597   ATTTACATAGAAAAA             TCTCTCCA TGC CGGAGAGA             TTTTTCTGAAATCAT 100 40
 CT43_CH3626 NONE
 CT43_CH3625 3647055 .. 3647073 -  -8.9  -5.06961   ACTAACAAAAAGAAA             GACACTC TTAGC GAGTGTC             TTTTAGCGCTTATTT  95 35
 CT43_CH3624 NONE
 CT43_CH3623 3643436 .. 3643455 -  -8.6   -5.8901   ATACAAAATAAAAAA            GACCTTGT ATTT ACAAGGCC             TTTTGCAAACTCCCT 100 16
 CT43_CH3622 3642234 .. 3642253 -  -3.4  -4.65078   ATATTTTTAATAAAA            GGCACCTC TGAC GGGGCACC             TTTTATTTTCACTCT  63 39
 CT43_CH3621 3641072 .. 3641086 -  -4.2  -3.38786   ATATACATACAAAAT               GCCACG TAG CATAGC               GTTCAGAAAGATCTC  51 46
 CT43_CH3620 3640501 .. 3640521 - -11.3  -5.93252   TTGAAAAATAAAAAA            GAAGCTATA ACA TATAGCTTC            CCTCTACGTTTCTTT 100 39
 CT43_CH3619 3640104 .. 3640132 - -13.4    -4.128   ATGCTTACATACAAA        TAAAAAGCATCC TAGAT GGATGCTTTTTA        TTTCAATGATATGTA 100 42
 CT43_CH3618 3638919 .. 3638947 - -11.8  -5.06816   ATTTTCGAACAAAAA        GAAAGCTGACCA TAAAT TGGGCAGCTTTC        ATATCCGATCATATT 100 373
 CT43_CH3616 3638159 .. 3638184 -  -9.9  -3.88498   CTTGGATACATTAAA         GAAGCAAGTAT TTAC ATACTTACTTC          TTTATTTATATATTG  87 11
 CT43_CH3613 3635963 .. 3636012 - -25.5  -5.47821   ATCGAGCTAAAAAAA GAACAATAAAGCGGAAATGCAAC TTAA GTTGCATTTCCGCTTTATTGTTT AATAAGGTGTACTTT 100 75
 CT43_CH3611 3634617 .. 3634632 -  -7.6  -5.63645   GTAAAATAGAAAAAA              GCATGA TTTC TCATGC               CCTTTCTTTTAATCG 100 20
 CT43_CH3610 NONE
 CT43_CH3609 3632646 .. 3632679 - -15.4  -5.61596   ATTCTCATAAAAAAA     GCCGTTCAAAGTGC ATCTCA GCACCCTGAACGGC      TTTTCTTATTAAGTT 100 34
 CT43_CH3606 3630190 .. 3630202 -  -2.7  -2.94411   AGTTTCTCAAATAAT                TAGCA CGC TACTA                GTACGCCTATTTACA  42 162
 CT43_CH3605 NONE
       ccdA2 3629266 .. 3629276 -  -3.2  -3.54363   AATAATACTAAAAAC                 CGGT AAA ACCA                 CCAAATAAACTTGAG  48 7
 CT43_CH3603 3628615 .. 3628635 -  -9.7  -5.24531   ATTTTCGATAAAAAA            GACAGCGCC TTT AACGCTGTC            TTTTTATTTAGTACA 100 51
 CT43_CH3600 NONE
 CT43_CH3599 3626339 .. 3626354 -    -9  -6.04324   GTAAAAAAGAAAAAA              GCTAGC ATTC GCTAGC               TTTTATACATTTTCA 100 28
        hutP 3624683 .. 3624734 - -21.2   -4.4874   CTTAAAAAGGCAAAA GGGGACCTTATCTTTTTAAGACAG ACTT CTGTCCTAAAAAAGTAAGGCCCCC TTCTAACTAATAGAC 100 51
        hutH NONE
        hutU NONE
        hutI NONE
        hutG 3619158 .. 3619185 - -11.5   -5.0916   CTTTTAACATAAAAA        CACATTACTAC ATTTGA GTAGTAATGTG         TTTTTGATAAGGCAT 100 63
 CT43_CH3592 3618068 .. 3618087 - -10.8  -5.31545   AATAATATTAAAAAA            GGTTTCCT TAGA AGGAAACC             TTTTTTGTTGACCAT 100 438
 CT43_CH3591 3616768 .. 3616800 - -16.6  -3.40382   TATGAAATTCCATAA      TAAAAGGAGAACAC TAGAT GTGTTCTCCTTTTA      TCTTTATTCATACTA 100 33
 CT43_CH3590 3615124 .. 3615141 -  -6.3  -5.86976   TCAGAAAATAAAAAA             GCCATAC AAAT GTATGAC              TTTTAACTCTATTTA 100 56
 CT43_CH3589 3613386 .. 3613414 - -11.9  -5.28942   CATTTTAAATAAAAA        GAGAGTAAACG CCAGTTT CGTTTACTCTC        TTCGCTAATCATTTC 100 34
 CT43_CH3588 NONE
 CT43_CH3587 3611475 .. 3611505 -   -20  -5.26875   GTCTTAAGTAAAAAA       GAAGCATCTGCTAA TCG TTAGCAGATGCTTC       TTTTTTTAAAATGCT 100 31
 CT43_CH3585 3609304 .. 3609337 - -15.5  -2.87325   ACTTTTCAGAAGAAG     TTAAAGACTAGGTGG GAAT CCACCTAGTCTTTAT      TTTGCATAAATTCAA 100 15
 CT43_CH3583 NONE
 CT43_CH3582 NONE
 CT43_CH3581 3606781 .. 3606822 - -19.9  -4.53119   AAAGAACACAAGAAA GAAAAATAAAAAAAGAGCC CATC GGCTCTTTTTTTATTTTCC  TTCATTCTTCTCTAG 100 17
 CT43_CH3578 3605027 .. 3605048 -  -7.4  -5.59502   TAAAAAATCAAAAAA           CTCCTTTA TTCATT TAAAGGAG            TTTTAAATATGAAAT 100 220
 CT43_CH3577 3603970 .. 3603999 -  -6.6  -5.39755   CAGAACGATAAAAAA       CATGTTTTGAAT ACATTG ATTCGAAACATG        TTTTTTATTTTTTAT  93 37
        alkK NONE
 CT43_CH3575 3601498 .. 3601520 -  -8.5   -5.3798   CAATAATAATAAAAA           GAAACACGC AATTA ACGTGTTTC           TTCCCTTTATCATCC 100 35
 CT43_CH3574 NONE
 CT43_CH3573 3598618 .. 3598634 -  -2.2  -5.63517   TTTTCAAAGAAAAAA              TCGGAA CAAAC TTCCGC              TTTACAGTAGCTCTT  80 307
 CT43_CH3571 3597749 .. 3597767 - -11.8  -3.16039   AAGCATTTTTAGTAA             GGATAGCT AAC AGCTATCC             TTACTCTATACTTAC  89 37
 CT43_CH3569 3595955 .. 3595975 -  -9.1  -5.93809   TTTTCACAAAAAAAA            GAAAGCAAA GGA TCTGCTTTC            TTTTCCTTTTTCTAT 100 37
 CT43_CH3568 3594651 .. 3594679 - -11.8  -3.85509   TTAATATAATTCAAA        CTAAGCCCCAGT TGGTT ACTGGGGCTTAT        GTTATTTCGCATGCA 100 27
 CT43_CH3565 3593595 .. 3593616 -  -6.6  -3.34227   TTACTAAAGCAGCAA           GGTTGTCG AATAAA CAACAACC            TCATTTACTTTTCTA  63 30
 CT43_CH3564 3592815 .. 3592842 -   -10  -5.34309   ACCAGTAAAGAAAAA        TCCCAAAAGG TCTATTTT CCTTTTGGGA         TTTCTTCTAATGTTT 100 32
        acnA 3589596 .. 3589625 - -16.7  -4.36914   TCCCTTTCCATAAAA       TAAGGAAGCTAAC TATT GTTAGCTTCCTTA        TTTTTCATTTCAATT 100 43
 CT43_CH3561 3587841 .. 3587886 - -11.5  -3.33045   CAATATCAAATAAAT GATGTTGAATAAAGATAAGGTC ACT GCTCTTATCTTTATTC-ACATC TCTTTCAAAATGAAT  88 30
 CT43_CH3560 3586724 .. 3586762 - -13.4  -4.63527   TCACTACTTGAAAAA   GAAAAGGCAGAAATGG CTACTTT CCATCTCTACCTTTTC   ACCATTACTTTAATT 100 30
 CT43_CH3559 3585503 .. 3585546 - -15.5  -4.82863   TAACTAGAAAACAAA TTAGCCCCCATCATTTTAG ATATGA CTAAAATGATGGGGGCTTT CAATATCAAACCAAC 100 183
 CT43_CH3557 NONE
 CT43_CH3556 3584227 .. 3584241 -  -7.2  -3.01791   ATCGCCTCCTTAACA               CTAGTA TCG TACTAG               TGTTAAGAATTATTC  64 35
        sspN 3583981 .. 3583998 - -11.3  -5.19212   ACGATTACGAAAAAA             GGCTGAC AAAA GTCAGCC              CTTTTTTTCATATTA 100 100
 CT43_CH3553 3582142 .. 3582157 - -10.4  -6.20267   TGAAAAATAAAAAAA              CGTGGC TTCT GCCACG               CTTTTTTATTTTTTC 100 31
 CT43_CH3550 NONE
 CT43_CH3549 NONE
        htrA 3576427 .. 3576457 - -18.6  -3.91412   AGTATAGCCGATAAA       GAAAGTCTCTTTCA ATA TGAAAGAGACTTTC       TTTTATTTCGATTAT 100 37
 CT43_CH3546 3575720 .. 3575739 -  -6.5   -5.0916   TCTTCAATAGAAAAA            TCCTTGT TTTCTC ACAAGGA             TTCCTCTAGGCTACT  82 262
        parE NONE
        parC 3571177 .. 3571205 - -12.6  -5.24531   ATTGCCTAGAAAAAA        GCATCTTGCTAC TATTC ATAGCAAGATGC        CCTCTTTATTCTGGT 100 31
 CT43_CH3543 3569936 .. 3569952 - -10.9  -5.45652   ATTCCTAATAAAAAA              GACACGA AAT TCGTGTC              TTTTTATTTTATAGA 100 29
 CT43_CH3541 3568369 .. 3568396 -  -4.1   -4.8269   TAGAATCACCAAAAA        GCCCTTTGGAT ATTTAA ATCGCAAGGGC         TTTTTCATATCAAAA  68 58
 CT43_CH3539 NONE
 CT43_CH3538 3565860 .. 3565877 -  -7.7  -6.02919   TTACAAATAAAAAAA             GCCCACT TTCT AGTGGAC              TTTCTACTTTATAAC 100 34
 CT43_CH3537 3565449 .. 3565460 -    -3  -3.45634   ATTCGAATTAACCAA                GTTT GAAA AAAC                 TCTTCTTTTTTAGTT  48 6
 CT43_CH3536 NONE
 CT43_CH3535 NONE
 CT43_CH3534 3563067 .. 3563083 -  -8.7  -5.98675   TACAAAAATAAAAAA              GCAGACA TTT CGTCTGC              TTTAATTCTCCTCAA 100 27
 CT43_CH3533 3560891 .. 3560929 - -21.4  -5.19328   ATCTCATAATAAAAA   GAGCATTCCAAAAGTAAA TAG TCTACTTTTGGAATGCTC   TATCATTTATCTTTC 100 120
 CT43_CH3532 3558870 .. 3558913 -   -25  -4.99035   TTAGCCATAGAAAAA CTGCACCCCCAATTGTTAGAC TGT GTCTAACAATTGG-GGTGCAG TTCATTATCTACCTT 100 58
 CT43_CH3531 NONE
 CT43_CH3530 3557329 .. 3557339 -  -2.6  -4.60889   AAGTATTTTTAAAAA                 TATT CAT AATA                 ATCAATTTATTTAAT  60 194
 CT43_CH3529 3555450 .. 3555484 - -11.7  -5.71712   GTGCACAGAAAAAAA    GCATTTTCAAG-TGCA ATGT TGCAACTTGAAAACGC     TTTTTTCTTTTACTA 100 38
 CT43_CH3528 3554632 .. 3554655 -   -14  -3.93664   ATTTAACATAGTAAA          GAGTTGGCTA CCTT TAGCCAACTC           TTTTTCTTTATTTTT 100 33
 CT43_CH3526 3553737 .. 3553754 -    -7  -5.76237   CATACAAATAAAAAA             CACGCT TTTCAC AGCGTG              TTTCATTGCTTTACA 100 28
 CT43_CH3525 3553266 .. 3553295 -  -6.6  -5.35354   TATATAAGTAAAAAA       GCCTG-TTTAAGC TCCAC GCTTAAAACAGAC       TTTTCCTACTTTTTA  93 77
 CT43_CH3524 3550951 .. 3550976 -  -3.9  -5.00616   GCTTGTTTGAAAAAA         GGGAAAGAGAA TCAA TACTCCATCCC          CTTCTTTTCCCTATC  70 43
 CT43_CH3523 NONE
 CT43_CH3522 3547329 .. 3547348 - -10.8  -5.54885   AATACTAACAAAAAA            GTGCAGAT TTTC ATCTGCAC             TTTTTTTATTCTTCC 100 31
 CT43_CH3521 3545405 .. 3545438 - -12.6   -5.5762   ATTAAATAGAAAAAA     CACGCTACTTGTTC TTATAT GAATAAGTAGCGTG      TTTTCATTTCCATTA 100 60
 CT43_CH3517 NONE
 CT43_CH3516 3537833 .. 3537883 -   -13  -4.27617   TATATTTTACCAAAA TGAGCCTT-CCGCCCAAACTATTT CCTAC AAATA-TTTGGGCGGAAAGGTTCA CTTCATGAAGTTTAT 100 37
 CT43_CH3515 3537385 .. 3537400 -  -6.2  -2.57132   CTCCTTGTTCATAAC              GAAAGA TTTC TCTTTC               TACCTGTATCGGTTT  56 60
       fdhD2 NONE
       narA2 3535430 .. 3535473 -  -6.2  -5.63517   TCTCCAAATAAAAAA GCAGC-TTCAAAAAACCTCCT CAA ATAAAGGTTTTTGAATGCTGC TTAATTTCTCTGCAC  93 140
 CT43_CH3512 NONE
 CT43_CH3511 NONE
       moeA2 NONE
       moaE2 NONE
       moaD2 NONE
 CT43_CH3507 NONE
 CT43_CH3506 NONE
 CT43_CH3505 NONE
 CT43_CH3504 NONE
 CT43_CH3503 3528278 .. 3528297 -  -7.9  -5.40464   CAGTATAAAGAAAAA            TGCGTAG AAAATA CTACGCA             TTATGATACTTTTGC 100 26
 CT43_CH3502 3527770 .. 3527792 -  -8.5   -5.3167   TAAAAACAAAGAAAA           GCAGAACAT ATAAA ATGTTCCGC           TCATAAACAATATCC  95 26
 CT43_CH3501 3525812 .. 3525847 -   -15  -3.10164   GGACCTACTACCCAA    CAAAATAAACCGAGAG ACAT CTCTCGGTTTATTTTC     TATATTTTTTTGCAT 100 18
        fabG 3524690 .. 3524733 - -17.9  -2.84878   TGGCTTAACTTAAAT TAATGAGAAAGAACCTGACC TATCC GGTCAGGTTCTTT-TCATTA TGTATTCCTTTAAAC 100 35
 CT43_CH3497 NONE
        panF 3521185 .. 3521205 -  -6.1  -5.22312   ATTCATACGAAAAAA            CGCAGTCTT ATA AGGACTACG            TTCTTCAGCTAACCT  84 39
 CT43_CH3495 3520097 .. 3520142 - -19.5   -5.1101   TTATCATTTAAAAAA CAAAATAATGGAGATGGTCAT TTAA ATAACCATCTCCATTATTTTA ACTTGTATGCTCCTA 100 47
 CT43_CH3494 3518910 .. 3518938 - -16.2  -4.96848   GCCTGTACATAAAAA        TAAACTCGGTGC TCTCT GCACCGAGTTTA        TTTAATAAAAGTCGC 100 23
       argH1 NONE
 CT43_CH3492 3516388 .. 3516426 - -14.8  -3.23979   ATTAGAATTGATGAA   TAACAAAAAGGTGTGCTA AAA TTGCACACCTTTTTGTTT   TACTTCTCTAAAAAT 100 25
 CT43_CH3490 3508009 .. 3508048 -  -8.8  -4.33274   TCTATATGATTAAAA  CAAAAAGAGCATCC AATTATTTTTCA GGATGCTCTTTCTG   TTTTTATTTTTTATG  87 29
 CT43_CH3488 NONE
 CT43_CH3487 NONE
 CT43_CH3486 3505860 .. 3505887 - -13.6   -6.5058   ATAAATAAAAAAAAA        GCACAGATGACT ATAC AATCATCTGTGC         TTTTTTTTACTTTTT 100 32
 CT43_CH3485 3505196 .. 3505211 -  -3.2  -3.06302   AGCAGTTGCACTTAA              CATCGT CTCC ACGTTG               ACACTCCCATTCTTA  45 38
 CT43_CH3484 3504175 .. 3504224 -  -6.5  -5.24989   CCAGATATTAAAAAA CTGCAACCCCTGAGGAGATTTAAC ATT GCTAT-CCTCCTCGGAAGTTACAG CTCATTTAAATCTCT  84 109
       cspB2 3503865 .. 3503880 -    -9  -6.17292   AAATGCAAAAAAAAA              GAAGGG CGAG CCCTTC               TTTTTTCAAAAATTA 100 38
 CT43_CH3482 3502851 .. 3502880 -  -3.7  -4.57482   GTAGCTAGAAATAAA       GGAGAATGT CATTTAACCTCT ACATTCTCC        TCCATCTCAGCCAAA  63 4
 CT43_CH3481 NONE
 CT43_CH3480 3501956 .. 3501973 -  -8.5  -5.21709   GTTTATATTAAAAAA             CGATTCT TAAT AGAATCG              TTTTTCCTGATTTAT  95 178
 CT43_CH3477 3498614 .. 3498637 - -11.2  -5.63517   TCTCTAAACAAAAAA          CTCTTCTTAT GCAT ATAAGAAGAG           TTAAATGTGAATCCA 100 383
 CT43_CH3476 NONE
 CT43_CH3475 NONE
 CT43_CH3474 NONE
 CT43_CH3473 3495315 .. 3495348 -   -17  -4.75372   ATTACGTATCAAAAA     GAAGCTAGAAAGTG ATTAAA CACTTTCTAGCTTC      TTTTATACTGCTTCT 100 28
 CT43_CH3470 3492882 .. 3492915 -  -5.5  -5.21709   TTTTATATCAAAAAA     GATAGATAATAGCAAA ATT CCTGCTAC-ATCTATC     CTCGTTTTCAACACT  80 39
 CT43_CH3469 3489545 .. 3489584 - -10.2  -4.35353   AATTAAAAACAATAA  GGATCAGAGCTTATCTAT TGTT ACAGATACACTCTAATCC   TTTAGTTTAATTACA  93 253
 CT43_CH3467 3486827 .. 3486844 -    -7  -4.83593   AATAATTACTAAAAA             CCACTC ATATAA GAGTGG              TTTTTCTATTTCCCC  83 302
 CT43_CH3465 3482496 .. 3482529 - -10.6  -5.09245   CTAAAATGATAAAAA     TAAGCACATCTTGTT ATAAA AACA-GATGTGCTTA     TTTTTTAATTTCTAT 100 37
 CT43_CH3463 3481091 .. 3481113 - -12.1  -5.12617   CAAGGACTGAAAAAA           GAAGAGGGA TACCT TCCCTCTTC           ACCAAAAAAATTAAA 100 118
 CT43_CH3462 3479135 .. 3479178 - -18.8  -3.17136   AACATAAAATAACGA TTTAAACAACAATTTTAAAT ACAA ATTTAAAATTGTTGTTTAAA AAACTGCAAAAAAAT 100 86
 CT43_CH3461 3477482 .. 3477526 - -16.1  -4.18737   CGAATAAAAACATAA TAAGGACCAAAGTTTATTTAT TTT ATAGATAAACTTTGGTCCTTT CGTTACATTATACAG 100 195
 CT43_CH3460 3476546 .. 3476580 - -11.6   -5.0133   GACGTGTTGAAAAAA     GCCTAATTTCTCTACA ATA CATTGAGAAATTAGGC     TTTAAATAGTAATAA 100 65
 CT43_CH3458 3471247 .. 3471275 -  -6.8  -4.55908   AATAAACATAAGAAA       GACGTTCAAATCC ATAT GGATA-GAACGTC        TTTTCACTTTACTTT  79 62
 CT43_CH3457 3470826 .. 3470855 - -19.5  -3.17212   GCATTACCCCATTAA       CAAAGGGACTCCA TAAT TGGAGTCCCTTTG        TTAATTAGCTATTAA 100 110
 CT43_CH3456 3469088 .. 3469114 - -12.5  -5.75342   TTTTTTGAAAAAAAA         GCATCTAATTC CATTT GAATTAGATGC         TTACTTTTAGTCCTT 100 58
 CT43_CH3455 NONE
 CT43_CH3454 3463875 .. 3463907 - -12.9  -3.51557   CTCTTTAAATAAAAG      CCAAATAGCCGTTCA TAA TGAACGACTATTTGC      ATCTAACTAATAATT 100 56
 CT43_CH3452 3462870 .. 3462885 -    -9  -4.57837   ATATGCCTTGAAAAA              GAACCC TATA GGGTTC               TTTTTCTTTTCATTA  90 207
 CT43_CH3447 3453617 .. 3453633 - -10.9  -5.75599   CAAATTAGAAAAAAA              GAATCCC ATT GGGATTC              TTTTTTGATTTCATT 100 173
 CT43_CH3443 3449006 .. 3449031 - -10.5  -6.10295   TGAACATAAAAAAAA         GAACCTGCAGC ACAC GCTACAAGTTC          TTTTTCACTACATTT 100 33
 CT43_CH3442 3447440 .. 3447451 -  -4.4  -3.02263   ATACTGCCGCTAATA                CACT TGGG AGTG                 CAGCAGCCGGCCCAA  50 95
 CT43_CH3441 NONE
 CT43_CH3440 3446390 .. 3446416 - -10.9  -4.19746   TCTATTTCAAAACAA         TAGGCAGCATG TATTC CATGCTGCCTT         AGTTTATTTTTTCTA 100 24
       paiB1 3445610 .. 3445629 -  -7.9  -4.42765   CTTTAAAAAATGAAA            GACCTTC AATTAA GAAGGTC             TTTTTAAATACGCTT  82 70
 CT43_CH3433 3440790 .. 3440844 - -14.6  -4.48869   CAAAAATAATACAAA CATTATAAGCGGTCGTAACCTTAT GGATTAT ACAAGGTTACGACCGCTTATTTTA TTGTTACATCATTTT 100 18
 CT43_CH3432 3438769 .. 3438818 -  -9.8   -5.8187   CATTCAATAAAAAAA GCCATAAAT-TATTTAG-GCTACA CTCC TGTATCCCTAAATAAATTTATGGC TTTTCTCAAATATCT 100 146
 CT43_CH3431 3437568 .. 3437594 -  -8.1  -5.00138   GAGTTAAATTAAAAA         GGGTATACC TAAAACACT GGTATACCC         TTTTCCACTTATTTT  91 34
 CT43_CH3428 3434829 .. 3434852 -  -6.1  -6.08342   CAACAAATAAAAAAA          GAAATGTCG CTCATT CAACATTTC           TTTAGACTTTCTTCA 100 68
 CT43_CH3426 3433128 .. 3433157 - -12.4  -6.14618   TACAAAATAAAAAAA       TCGGTATTGATA ATTACA TATCAATACCGA        TTTTTTTATAATTAC 100 37
 CT43_CH3425 3431613 .. 3431650 -  -8.1  -2.78237   CAAATAATAAGGAAC   GACAAAATAGATAAAGAT AAG AT-TTCACCTATTTTGTC   TATATAAGCAGCACA  67 57
 CT43_CH3424 3431060 .. 3431070 -    -4  -4.56597   TCCTTTTTTCAAAAA                 GATA AAA TATC                 TTATTTAATTCAACA  65 52
 CT43_CH3423 3429909 .. 3429929 -  -3.3  -4.31943   TTTATATAAAAAATA            TAAAGCTGA CGT TAAGCCTTA            AATTGACTCTTGACA  58 80
 CT43_CH3422 3428738 .. 3428750 -  -2.7  -3.35197   TGGTATACATATCAA                TACTC CTT GAATA                TATTTTCTTTTCATT  44 50
 CT43_CH3421 3427872 .. 3427910 - -17.8  -2.87132   TTGCTTTCGTACATA   GAATAAGGATTGACATAA TGT TAATGTCAATCCTTATTC   TCATTCTATTTTCGT 100 26
 CT43_CH3420 3426633 .. 3426658 - -13.4  -4.93296   TCAGCATTATAAAAA         GCATGCAGAG TATATG CTCTGCATGC          TTTTTCATTTGAATT 100 44
        amyS 3422139 .. 3422172 - -15.5   -5.1523   TGCACAATATAAAAA     GAAGAGGTAGACTTA TATT TCAGTCTACCTCTTC      TTTTTCATCACCAAA 100 41
 CT43_CH3415 NONE
 CT43_CH3414 3418254 .. 3418287 - -14.9   -5.7946   CGCTTAATAAAAAAA     GCTATCTTTCTGTAT ATCC ATACAAAAAGATAGC      ATCTTTTATGATTAC 100 59
 CT43_CH3413 3417395 .. 3417428 - -14.1  -3.28879   CATAATTCACAAAAT     GAAAAGGAAGCTAGA TTTC TCTACCTTCCTTTTC      TTATTTCTATTTGAG 100 47
 CT43_CH3411 3415318 .. 3415350 - -12.9  -4.90471   ATTTAAAACATAAAA      GAACCGATACTTG TTATATT CAAGCATCGGTTC      TTTATACAAAATTGC 100 77
 CT43_CH3410 NONE
 CT43_CH3409 3414026 .. 3414060 - -10.2  -4.74767   AGAATGAATACAAAA     CGAGCATGTTTTGA AATCCAA TCAAAACATGCTCT     TAAAATATTCTATCT 100 60
 CT43_CH3407 3412753 .. 3412800 - -14.6  -3.63569   CTAATCCTTCAAGAA GTTATACAAAAAAGGTAGATAA TAAT TTATCTACCTTTTTTGTATATA TTATTTAACATTACA 100 70
 CT43_CH3406 3411504 .. 3411543 - -18.1  -4.68593   CTGATTATGTAAAAA  CAGTTAGCCCATCATTC ATTAGA GAGTGATGGGCTAACTG   TTTTTAGTAATATTT 100 97
 CT43_CH3404 3409236 .. 3409247 -  -3.6  -3.04188   TACGATAATCATATA                GCAC GGTT GCGC                 TCTCAAAATCACCAT  46 189
 CT43_CH3403 NONE
 CT43_CH3402 3407423 .. 3407442 -   -10   -5.3798   TAACAATAATAAAAA            GCCCTCCA AATT TAGAGGGC             CTTTCCTAATAGCGA 100 48
 CT43_CH3401 NONE
 CT43_CH3400 3406338 .. 3406362 - -17.3  -4.35524   TCGTCAAATCCAAAA          GGTTTGCAGCA TCG TGCTGCAAACC          TTTTTTCATCACCAA 100 34
 CT43_CH3398 NONE
 CT43_CH3397 3403622 .. 3403643 - -12.3  -5.29445   CTTCAACAAGAAAAA           GCGCCATCA CAAG TGACGGCGC            TTTTTCTATGTAAGA 100 65
 CT43_CH3395 NONE
 CT43_CH3394 3401644 .. 3401654 -  -2.6  -3.09749   TAGCGTTAAGATAGA                 TTAA AAT TTAA                 AAAGGGACCCCTTGC  43 22
 CT43_CH3393 3401226 .. 3401248 -  -9.2  -4.55287   CTCATTTACATAAAA           GAAAGAGGAA GCT CCCCTCTTTC           TTTTAAATCATCCCT  90 28
 CT43_CH3391 3398999 .. 3399032 - -14.9  -3.69483   ACCCCAGCCAAAATA     TAAAAGAGCCTCATT TAAA AATGAGACTCTTTTA      CGATTTCATATTTAA 100 37
 CT43_CH3390 3397082 .. 3397112 - -17.1  -4.04071   AAATAGCAACAATAA       GAAAAGGCTGTTC CAGAT GAACAGCCTTTTC       TTTATTTACTTGAAA 100 27
 CT43_CH3389 3395928 .. 3395951 - -11.1  -4.98531   TTTTTAAACGAAAAA          GTCATGAGC ACGTAA GCTCATGAC           TTTTTGCATTATATA 100 34
 CT43_CH3385 NONE
 CT43_CH3384 3393201 .. 3393216 -    -9  -5.80951   ACTCAAAATAAAAAA              GAGCAG TTCA CTGCTC               TATGAACTACTCTTC 100 50
 CT43_CH3383 3391797 .. 3391809 -  -2.7  -4.56597   TTTCTGCTTTAAAAA                TGTAA TGA CTACA                AAAACCAATTTAAGG  60 263
 CT43_CH3382 3391498 .. 3391512 -  -2.8  -5.85244   AATGAAAATAAAAAA               GCTG TTCCTTC CAGC               TTCTTTATCTATATA  79 34
 CT43_CH3380 3389709 .. 3389728 -  -2.8  -4.65895   TGGTGCAGTGAAAAA            GATTACCC AAAT GGATGATC             TTTTTTATAATTTAT  60 30
 CT43_CH3378 NONE
 CT43_CH3377 3388208 .. 3388227 - -10.8   -5.5604   GTAATTAACAAAAAA            GCGTACAA AATT TTGTACGC             TTTAAAACTTAATCT 100 34
 CT43_CH3376 3387280 .. 3387305 -  -9.1  -4.34488   TATAGTTAGAAGAAA         GAGAGGAGAAA ATTA TTTCTCCTTTC          TTTTGTATTTCTACA  88 46
 CT43_CH3375 3385236 .. 3385270 - -13.9  -4.24933   TAAGAAAAGAAAATA     CCCCAAAACAAAAAT TCTAC ATTTTTATTTTGGGG     CGCTATACTATACCA 100 93
 CT43_CH3374 NONE
 CT43_CH3373 3384051 .. 3384073 -  -3.4  -3.04527   AGTTAAAAATATAAC           TGAATAGCTA TGA TGGCAATTCA           TATGTGTAACCAGCT  46 66
 CT43_CH3372 NONE
 CT43_CH3371 3382366 .. 3382385 -   -10  -5.05116   TGATAAATAATAAAA            GCACGGAA AATC TCCCGTGC             TTTTCTAAATATATA 100 72
 CT43_CH3369 3380661 .. 3380685 -  -7.2  -4.62783   TATTCATTTCAAAAA          GGCCAACAAT ACAAG ATCGTTAGCC          TCTAATTTCCATATT  80 57
 CT43_CH3368 NONE
 CT43_CH3367 3379867 .. 3379883 -  -6.7  -2.82023   TACTGATATTAAGTA              TACTTTA TTG TAAAGTA              ACAAAAAAGCTATTT  61 13
 CT43_CH3366 NONE
 CT43_CH3365 NONE
 CT43_CH3364 3376327 .. 3376360 -  -8.4  -5.61881   TTTCAAAAATAAAAA     CCATCAATTTGA AAAAAGATAA TCAAATTGATGG      TTTTCTTATAATATC 100 111
        sigI NONE
 CT43_CH3362 3373612 .. 3373626 -  -5.8  -4.39226   AGAACTATAAAATAA               TAAAGT GTA ACTTTA               ATCAGCTCTCATCAA  72 173
 CT43_CH3361 3370202 .. 3370218 -  -8.7  -5.66868   AATCAATGAAAAAAA              GAGCAGA TAG TCCGCTC              TTTTATGATGCCTCC 100 28
 CT43_CH3360 3369631 .. 3369667 -  -4.6  -5.93252   CTTAAAAATAAAAAA   CGCTATTC-TCTCTGTA AAAT CATAGAAAAGAATAGCG    TTTTTTATTTTGAAA  91 54
 CT43_CH3359 3369335 .. 3369392 - -10.4  -3.05816   TCATTTTTTAGCTAA CTTGT-T-TTCTTAGATTGATGGACGTG ACCC CACATCCATCAATCTAAAAAGATACAAT TAGAAAAATGAGATT  83 79
 CT43_CH3357 3368230 .. 3368268 - -16.4  -3.62875   AATATAAGAAGAATA   TAAAATAGCCATTTACTT CAC AAGTAAATGGCTATTTTT   CATTATATATTAGAA 100 28
 CT43_CH3356 3366585 .. 3366611 -  -9.5  -5.03994   TTTGATACATAAAAA         CCCAGTCATGC TTTAT ACATAACTGGG         TTCTCCATCGTTTCA 100 48
 CT43_CH3355 NONE
 CT43_CH3354 NONE
 CT43_CH3353 NONE
 CT43_CH3352 3363510 .. 3363536 -    -8  -2.80493   TGTTGAACAGATAAT         GAAAGTCCGG ATGTATG CCGGGCTTTC         TTTTTTATATTAAAA  68 30
 CT43_CH3350 NONE
 CT43_CH3349 NONE
 CT43_CH3348 NONE
 CT43_CH3347 NONE
 CT43_CH3346 3359417 .. 3359437 - -14.1  -4.97461   AAGAAATACGAAAAA            GCAAAGCAC TAA GTGCTTTGC            TCCTTATAAAATCCC 100 29
 CT43_CH3345 3357574 .. 3357598 -  -9.4  -5.82036   ACAAGAAATAAAAAA          TACTACCTCC AAATG GAAGGTAGTA          TTTTTTTATTAATCA 100 34
 CT43_CH3342 3355143 .. 3355174 - -14.7  -4.96848   CCCTCTATACAAAAA      GAAAAAACGAACG TATTCT CGTTCGTTTTTTC       TTTCTTTATTCAGCT 100 31
 CT43_CH3341 3354614 .. 3354636 -  -9.2   -5.0925   TTTTAAAACGAAAAA           CACCACCT CTTCATT AGGTGGTG           TTTTCAATATTACAT  95 54
 CT43_CH3340 3353080 .. 3353138 - -13.5  -3.09831   TTGATTTTAAAATTA TATATCAAAAAGTCGAGATAGAAATCA TTTTC TGATCCCCATCTCGACTTTACGTTATA GACTTATGTCCTATC 100 90
 CT43_CH3339 3351760 .. 3351777 -  -2.7  -3.90922   AGGTGTGTGAAAGAA             TGACATA AATT TTTGTCA              TCGCTACCTTTCATT  51 177
 CT43_CH3337 3349396 .. 3349420 - -13.7  -3.95858   AGAAGACATAAAATA          GGTTGAGACAA TAC TTGCCTCAACC          AGTTTTTATGTCTCT 100 31
 CT43_CH3335 NONE
 CT43_CH3334 NONE
 CT43_CH3333 3347537 .. 3347551 -  -2.2  -2.65129   AAACATATAGAATAC               TTCTTA CCA TAAAAA               AATTAATTCCTTTAT  40 102
 CT43_CH3332 3347015 .. 3347027 -  -4.9    -3.885   ACGGCTATATAATAA                TTAAG CCG CTTAA                CGCTCTTGATTGATA  60 22
 CT43_CH3331 3346500 .. 3346534 - -11.7  -3.41745   TTTTCATAACATCAA     TCCTCTCTTTTATTA AGATG CAACAAAAGAGAGGA     TATTATTGATTAGGG  91 55
 CT43_CH3330 3345733 .. 3345749 -  -5.8  -6.28401   CAAAAAACAAAAAAA              CTGCCC CATAT GGACAG              CTCATTTACATAATT 100 78
 CT43_CH3329 3343281 .. 3343318 - -13.7  -5.10933   TTATCCAAAATAAAA   GCGCCTAACATATTA GGGATATA TAATACGTTAGGCGC    TTGATATTTAAAATT 100 231
 CT43_CH3328 NONE
 CT43_CH3327 NONE
 CT43_CH3326 NONE
        phnA 3339509 .. 3339527 -  -7.4  -4.75308   ATTAATACTGAAAAA             CCACCTTT ATG AGAGGTGG             TTTTTGTTGCTAATG  86 329
 CT43_CH3324 3338414 .. 3338450 -  -6.8  -5.08178   ATAGACATACAAAAA   CGCCATCCTTTCCTATA ATTT TA-AAGAAAGAATAGCG    TATTCTTTTCAAAAA  85 69
 CT43_CH3323 NONE
 CT43_CH3322 3336912 .. 3336945 - -13.4  -5.42164   GACAAATAATAAAAA     GGCAAAAACGAACA GAAATG TGTTCATTTTTGCC      TTTTTTATTTAACGA 100 41
 CT43_CH3321 NONE
 CT43_CH3320 3334309 .. 3334327 - -11.8   -5.9218   TAGACAATAAAAAAA             GAGTGCAA TTT TTGCACTC             TTTTTACTCATTTCT 100 42
 CT43_CH3319 3332767 .. 3332797 - -10.5  -5.00616   TTGCTGGTCAAAAAA       GCCAGGTAGTATG AATAA CACATTACCTGGC       TTTTTACATTTTTAA 100 95
 CT43_CH3318 3331671 .. 3331695 - -13.7  -5.10665   ATGTAAGAAATAAAA          CAAGGTGATCA AAA CGATCACCTTG          TTCCTTTAAAAATTA 100 209
 CT43_CH3316 3330181 .. 3330198 -  -4.1  -3.59202   TAGCTTCATATACAA             TTCATGC TCAA GCATGTA              AGTGTCCCCCTTCAA  53 15
        ribD 3329065 .. 3329114 -  -6.7  -2.52464   CCTTTCTGCAATCCA TTTATCGGAAAATATAAGTAG CTTTTATT CTCCTTATATTTTCCGATATT CTGGATAGCCAATAA  59 9
 CT43_CH3314 3328382 .. 3328415 -  -9.9  -5.20216   GATAGTATTAAAAAA     TA-AGGAAAGACATAA CAC CTATGTCTTTCCTCTA     AAATTGTAACACTCA 100 79
 CT43_CH3313 3326154 .. 3326177 - -10.4  -6.11644   TTATTCAAAAAAAAA          CACGAAGACT CTTA AGTCTTCATG           TTTTTTTATACATGT 100 139
 CT43_CH3312 3323594 .. 3323617 -    -4  -3.71649   TTTCGAAATTGGAAA          CATAGATA TTTCAAGC TATCTATG           TTTATCTACTATGAA  53 106
 CT43_CH3311 3321745 .. 3321767 - -11.4  -5.51165   AAAATTCTAAAAAAA           CCTTGCAGAA AAA TTCTACAAGG           TTTTTGCCTATACAC 100 94
 CT43_CH3310 3320239 .. 3320279 -  -9.3  -5.39221   ACAACAAGTAAAAAA TAACAGCCGAATTTTTCT TATAGT AG-AAAATTCGGCTGTTT  GCATGTCGCAATTTA 100 131
 CT43_CH3308 NONE
 CT43_CH3307 NONE
         zwf 3316020 .. 3316032 -  -4.9  -3.13177   ATATTTTATATTTAA                TTACT TTT AGTAA                TTAAATAATCCTATG  52 149
         zwf NONE
        tkt1 3312212 .. 3312264 -  -4.5  -2.67188   TCATATCACTACAAT CTG-GAATACCTTTCAGCAC-TA ATAAGTTGG TATGTACAGAAAGGTATTCACAG TCATAGCTTAAGAAT  48 33
 CT43_CH3303 NONE
 CT43_CH3302 3310235 .. 3310288 -  -3.3  -4.99035   TGATTTATATAAAAA GAATCTCCCTTATTAGAGATACA CTATAACT CATCTCTCTAATAAGGGGATTTC TCTTTCATAATTATA  69 225
       gntP3 NONE
      gntK_1 3307372 .. 3307384 -  -3.4  -3.05596   TACGTCTTGATGGAA                GATG TCCGC CATC                ATCTGTCTCCAAAGT  46 24
      gntK_1 NONE
 CT43_CH3298 3305857 .. 3305894 - -20.3  -4.89966   AGACCGAAAAAGAAA   TAATAAAAAGCAAAGCG ATAT CGCTTTGCTTTTTATTA    TTTTCTAAGTTTATG 100 60
 CT43_CH3296 NONE
 CT43_CH3295 3304099 .. 3304127 - -10.3  -5.59962   GAAAAGAAATAAAAA        GCAGGCAGAGATT CTT AGTCTCTGCCTGT        TCGCATTATTGGATC 100 11
 CT43_CH3293 3302773 .. 3302783 -    -4  -4.53349   TAATTATTAAACAAA                 TAGT ATT ACTA                 ATATTTTTGTAAGTT  62 80
 CT43_CH3292 3301929 .. 3301940 -    -3  -4.99035   TCATTTATACAAAAA                CATA ACGA TATG                 CATCACTAAAACGTA  67 3
 CT43_CH3286 3296297 .. 3296320 -  -8.2  -2.60901   ATATTTCCAATGAAT          CCCCTTAGTT AAAA AACTAAGGTG           TCCACCTCCTGTATA  67 116
 CT43_CH3285 3294958 .. 3294980 - -12.1  -4.78237   TACTTTAGAAGAAAA           GCAGCAACT TACAC AGTTGCTGC           TTTCTCTTCTTGTTC 100 11
 CT43_CH3284 3294477 .. 3294494 -  -5.5  -5.37593   CGCTAAACTAAAAAA             GGAACCC GATT AGGTCCC              TTTCATCATAGCTCT  84 58
 CT43_CH3283 3293669 .. 3293700 - -12.5  -5.60993   TTTTTCATAAAAAAA      GAGAGGAATCTAC ATCAAA ATAGATTCCTCTC       TTTTACATTTAGACT 100 78
 CT43_CH3279 NONE
 CT43_CH3278 3290085 .. 3290117 - -16.6  -4.72007   TTTTATTAAAATAAA      GAAGCCTATCATTT GTTTG AAATGATAGGCTTC      TTTTATAAAAACAGT 100 41
 CT43_CH3277 NONE
 CT43_CH3276 3288066 .. 3288098 - -12.1  -5.27779   TTTAATATTAAAAAA      CACAAGGTGTGTCTT ACA AAGACATTCCTTGTG      TTTTTTATATTCTTT 100 39
 CT43_CH3273 3286656 .. 3286682 - -11.7  -2.71144   CACCTCTTCGAATGA         TGAAAAGCCCT TATTC AGGGCTCTTCA         TCATAATCTATATAT  87 41
 CT43_CH3272 3286185 .. 3286195 -  -2.6  -3.05521   ACCATATTCGCAACA                 TTAA TAT TTAA                 AATTCTCCTGAATTT  43 15
 CT43_CH3271 3285476 .. 3285505 - -16.7  -5.45652   ATTGTTAATAAAAAA       GAGCTAAAACAGT TCCC ACTGTTTTAGCTC        TTTTTTTCATGTATT 100 32
 CT43_CH3269 3282927 .. 3282949 - -13.4  -3.41913   TTTATATCGAAAAAC           GAGGGAACGC TCA GCGCCCCCTC           TCAAATCCAATCCGT 100 13
         maa NONE
 CT43_CH3267 3280303 .. 3280324 -  -7.5  -3.18634   ACCTTAATCAACATA           CTTATTAAA CACT TTTAATAAG            TTGCGTTGACAATAT  69 118
 CT43_CH3266 3279218 .. 3279243 -  -5.5  -3.06796   TTTTATGTTATTCAA         CTGGCAATTGGA TGC TTCA-TTGCCAG         TACATTTAATTTTCT  54 31
 CT43_CH3265 NONE
 CT43_CH3264 3278377 .. 3278415 - -16.2  -4.25088   AAAATAGAAATCAAA   CAACCTCATTTCCCGTCA TTA CAACGTGAAATGAGGTTG   TTATCGTTCACCGTA 100 65
 CT43_CH3261 NONE
 CT43_CH3260 3274983 .. 3275021 - -14.1  -3.80452   AAATTATAGCAACAA   TAGTAAAAGGAGGCTAA TCCGC TCAGCCTCCTTTTACTT   ATTAGTCTTCTAGTA 100 27
 CT43_CH3259 NONE
 CT43_CH3258 3272983 .. 3273004 -  -5.9  -3.14026   TATACGCATATTTAA           TTCACGCAT TATA ACACGTGAA            TGACCTTGTATAGTA  57 253
 CT43_CH3257 3271886 .. 3271931 - -16.6  -3.96327   ATTTTTGAGGATAAA TAAAAAATACCGTCATTCTT TCCAAG AAGAATGACGGTATTTCTCA TCGATTATCCATATA 100 30
 CT43_CH3254 3270940 .. 3270956 -  -2.3  -4.04927   TTAATTACCAAATAA              CTATATT GAT ATTATAG              CATACTTCTATTTTA  52 65
 CT43_CH3253 3269969 .. 3269982 -  -4.5  -2.98312   AAAAATACCCATATA               CTCGC AATC GCAAG                TCCCATTGCGATAAT  49 225
 CT43_CH3251 3267643 .. 3267691 -  -9.9  -5.54338   CAAGTAAAAGAAAAA GAGTATATTGTCACATTAAGA ATTACTA TCTTCATATGACGATATACTC TTCTATCAAATTTTT 100 123
 CT43_CH3250 3266712 .. 3266731 -  -7.9  -5.39221   ATAACAACCAAAAAA            GCCTACT GACACG AGTAGGC             TTTTGAAACTACGAA 100 34
       pykA1 3263814 .. 3263837 -   -11  -2.74242   AACAAGAGTAAACAC          GAGGGGGGAT GCAT ATCCACCCTC           TTTTTTTTACTCATC  82 39
 CT43_CH3244 3262094 .. 3262143 - -19.1  -5.18355   GTTAAAAAGTAAAAA TATAGAAATAAAAGGTGTTTTCA CGTA TGGAAACACCTTTTATTTCTACA ACTATTTCACATATC 100 63
 CT43_CH3240 3258614 .. 3258646 -  -7.1  -5.52023   AGTAGCAAGAAAAAA      GGATAATCCGTCC TCATAAT GGACTAATTATCC      TATAAATCTTTATCT 100 79
 CT43_CH3239 3257469 .. 3257497 - -19.1  -4.19735   CTGTCTAAAATCAAA        GGCAGGAACATAT TTG ATATGTTCCTGCC        TTTTTAATGTCGGTA 100 240
 CT43_CH3238 NONE
 CT43_CH3237 3254820 .. 3254857 -  -5.7  -5.95539   GTCCAAACAAAAAAA   GTTCTAGAAATTGTAGA AGAA TCTCTACTTTCTAGAAC    TACGGTAGTCAAAGT 100 374
 CT43_CH3236 3253755 .. 3253787 - -15.2  -5.64421   ATTTTAAATAAAAAA      GCTTGTTTCTTATA TTTTC TATAAGAAACAAGC      TTTTCTTTTTCAACT 100 117
 CT43_CH3235 3253274 .. 3253303 -  -6.6  -4.91459   TAATACGTACAAAAA       TAGATTGGATACC ATGTA GGCA-CCAATCTA       TTTTAATTAAAGAAA  83 32
 CT43_CH3234 3251836 .. 3251876 - -13.5   -4.7373   TTATTCTAGTAAAAA  TATAAGAAGGGATTGATCA TAA TGATCAATCCCTTCTATCA  AAATATAATACCTTT 100 48
 CT43_CH3232 3249342 .. 3249356 -  -5.6  -5.72616   ATTTACACAAAAAAA               GGCCCT TCA AGGGCG               TGCGATTGACACTCT  91 311
 CT43_CH3230 3246521 .. 3246535 -  -2.9  -3.99347   AAAGGATGTAAAGAA               GAAAA ACTTA TTTTC               ATAGCCCTTTACCGA  55 50
 CT43_CH3229 NONE
 CT43_CH3228 NONE
 CT43_CH3227 3243270 .. 3243294 - -12.3  -5.55769   TTTGACAATAAAAAA          TGCTCCTTACA ATA TGTAAGAAGCA          TGAAAGAGGCAAACG 100 82
 CT43_CH3226 3242417 .. 3242438 -  -8.7  -5.17054   ACAAGATTGAAAAAA           CTTCCCATC ATAA GGTGGGAAG            TTTTTTTCAAATGGC  95 32
 CT43_CH3224 3241635 .. 3241649 -  -7.8  -6.09133   TATTTTAAAAAAAAA               GAGAGC TTA GCTCCC               TTTTCTCGCCTTATA 100 17
 CT43_CH3223 NONE
 CT43_CH3222 NONE
 CT43_CH3221 3240008 .. 3240024 -  -6.6  -4.56914   TTATTTAAACGAAAA              GCTAGT TTTAT ACTAGC              TTTTTTTACATAATA  79 43
         alo 3237925 .. 3237941 - -10.9  -3.06696   TGCCGCGCCAATATA              TTGCGCA TTT TGCGCAA              TCCTGTTTCAGAAAA  84 220
        adP2 3236598 .. 3236619 - -13.1  -5.45652   ATTCCCAATAAAAAA           CTCCTCTTG CATT CAAGAGGAG            TTTTTGTTGTGCTAT 100 154
 CT43_CH3213 NONE
 CT43_CH3212 3231930 .. 3231958 - -11.2  -5.56673   ATTCACAATAAAAAA        GAAGCTAAAAGA ATGAA CCTTTTAGCTTC        CTACCCTTCCCAAAC 100 26
 CT43_CH3211 NONE
 CT43_CH3210 3230414 .. 3230434 -    -9  -4.96435   TTAATAAAAAAACAA            GCCACCCA GCTAT TGGATGGC            TCTATACGATAAAGA  95 56
 CT43_CH3209 3228589 .. 3228599 -  -2.6  -3.11289   CCAATGCTAAAATTA                 TAAA TTT TTTA                 ATTGTATCTCATTCC  43 52
 CT43_CH3208 3227658 .. 3227681 - -12.6   -4.8622   GTTGTGAATGAAAAA          GGATCTGATA TGAA TATCAGATCC           TTTTTCATTGCTTCT 100 190
 CT43_CH3207 3226823 .. 3226848 -  -7.6  -5.20216   TAGATTATTAAAAAA         GGTGTCAATC AAGAAA GATTGGCACC          TTTTTTTAATGTAGA  91 92
 CT43_CH3205 3225051 .. 3225081 -  -5.6  -3.58864   TCATTATTATAAATA       GATATACACACA TTTTCGC CGTGTATATATC       TCAACCTCCTTTTGT  59 306
 CT43_CH3204 3223033 .. 3223066 - -10.5  -3.44848   TCTTCCTACTAAATA     GGAGCTATTCCAAATT ATT ATTTTGG-ATAGCTCC     TTTCAAATTCTTCTT  85 178
 CT43_CH3203 3222326 .. 3222355 - -12.3  -5.38348   AAAAACATTAAAAAA       CCCCCTTCATT TTCCTACC AATGAAGGGGG        TCTTTCTTATCGTTT 100 32
 CT43_CH3202 3219747 .. 3219779 - -15.1  -3.76373   TTTCGAAGATGGAAA      CAGCCTACTATCA AATTAAA TGATAGTAGGCTG      GCTGTTAAAATTATT 100 124
 CT43_CH3200 NONE
 CT43_CH3199 3217910 .. 3217960 - -12.3  -3.91164   AAGCTCCTAAAAATA GTAAGATAAATAAAAAAGGAACGG GTTT CCGCTCCTTTTTTATCTTT-TTAC GATTATCAATCCATT 100 31
 CT43_CH3198 3216633 .. 3216652 -  -3.6  -3.23393   CCCTAGGTGATAAGA            TGGTGAAA GGCC TTTCACTA             GAAATATATGTAGTA  48 70
 CT43_CH3197 3216366 .. 3216393 - -12.2   -5.4251   TTTATACATAAAAAA        GTGTTAAGTACA TAAT CGTACTTAACAC         TCTAATAATGAAAGA 100 48
        serC NONE
 CT43_CH3195 NONE
 CT43_CH3194 3212626 .. 3212665 -  -8.8  -4.16146   AAAACACTTGTAAAA  TAAGAAAAACCGAAACTA AAAA TCATTTCGGTTTTTCTAA   CTAAAGAAGTCTATT  87 40
 CT43_CH3193 3212043 .. 3212071 -  -8.9  -3.62418   ATAATTTAGTGGAAA        GGACATTTCTTGT AAT ACTAGGAATGTCC        TTTTTGTTGACGAGT  80 172
 CT43_CH3190 3209452 .. 3209493 - -17.7  -5.60556   AACACAAAACAAAAA GTACCCATCAAATTGTTAT ACAC ATAATAATTTGATGGGTAC  TGCATGATACATTTA 100 96
 CT43_CH3189 3208992 .. 3209015 -    -9   -4.1958   ATACAAAGCAAATAA          GCGAAG-CTAT AGA ATAGACTTCGC          ATCAAGCGTGTGATC  88 113
 CT43_CH3188 3207808 .. 3207844 - -14.1  -5.74684   CAAGAAAAAGAAAAA    GAATCTATTTTGAAAAA AGA TTATTCAAAATAGATTC    TCACGTTTTAGTATT 100 67
 CT43_CH3187 NONE
 CT43_CH3186 3205650 .. 3205671 - -10.9   -5.5604   CTAACGAACAAAAAA           GAGGCCGTT CCGA AACAGCCTC            TTTCATCTATTTAGG 100 32
 CT43_CH3185 3204533 .. 3204545 -  -6.3   -3.2614   TAGCTTGGATACCAA                TTGGT GCG ACCAA                CATATTATTTGCGAC  58 477
 CT43_CH3182 NONE
 CT43_CH3181 3200940 .. 3200963 - -12.6  -6.47325   AAAAAACAAAAAAAA          GAACTCTTAC AATT GTAAGAGTTC           TTTTTTTCATCATAC 100 35
 CT43_CH3177 3196041 .. 3196064 -    -6  -5.60993   TTTTTTATAAAAAAA          GACACAGAGA TTCC TCCCTATGCC           TACTAATTCCCTACC  90 36
 CT43_CH3176 3195543 .. 3195577 - -10.2  -3.16564   GGCTCACCGTATTAA     TTATTCCTCTTCAATT CAA AATGGATGAGGAATAA     TTCTGTACCTTAGTC  81 167
 CT43_CH3175 NONE
 CT43_CH3174 3194069 .. 3194095 -  -4.5  -5.84011   AATAAAAAATAAAAA         GAGAACTACTC TCTTT AAGCAATTCTC         TTTTTCACCCAAACA  87 60
 CT43_CH3173 NONE
 CT43_CH3172 3192330 .. 3192342 -  -3.5  -3.76125   TTAGCTGAATGTAAA                TTTAT ACG ATAAA                TCACTTCGTTTAATA  52 105
 CT43_CH3171 3190595 .. 3190606 -  -5.8  -3.42315   ATTACATGTAAAAAT                GGTG AAGT CACC                 TTTCTCGGTTAAAAA  61 306
 CT43_CH3170 3189508 .. 3189525 -  -9.9   -5.9218   TATATAACAAAAAAA             GCATTGG ATAC CCAATGC              TTTTTACACTTACGC 100 35
 CT43_CH3169 NONE
 CT43_CH3168 3186655 .. 3186691 -  -2.9  -5.19328   AGTTCATAACAAAAA    CGCCATCTCTTCCTTTG ATT CTAGGGAAAGAATAGCG    TTTTTGTTACGTAAC  71 144
 CT43_CH3167 3186390 .. 3186405 -  -6.2  -2.62026   GAGTGGAATAGGAAT              GATTAG TAGT CTAATC               GGGATGGGGAAATTC  57 80
 CT43_CH3165 3183786 .. 3183823 - -15.1  -3.14683   ATACTGTGTTACTAA   TGAAAGAGGACCTGATA TGAA CATCAGGTCCTCTTTTA    CTATATAATTATTTC 100 132
        cypD 3179860 .. 3179889 - -15.2  -3.60475   AATGTCTATGTGAAA       CAGGACCTGATA GATGCA TATCAGGTCCTG        TTTTTTATTTAGTAG 100 134
 CT43_CH3161 3176621 .. 3176645 -  -8.7  -5.24449   TAGAAACCTAAAAAA          GTCCATTTAGA AGA TTTAAATGGAC          TTTTTCACTCATATA  95 93
 CT43_CH3160 3175400 .. 3175419 -  -8.6  -4.18187   AAATACACAAAAAGA            CCGTCACA GTAT TGTGACGA             AAAAACAAGAAAATT  87 60
 CT43_CH3159 NONE
 CT43_CH3158 3173474 .. 3173500 - -12.4  -5.43866   TAAGTTTTAAAAAAA         GCTCATGGAACC TGT AGTTCCATAAGC         TTTCTATCTAATTGG 100 29
 CT43_CH3157 NONE
 CT43_CH3156 3170613 .. 3170653 -  -4.9  -3.93009   GAAGATAAAGTGAAA CT-TTAATCAGTGGGG TTTGTTCATC CCCCACTGATTATGAG  CCCTCACCAATCGTG  60 76
 CT43_CH3152 3164807 .. 3164851 - -11.8  -5.40474   ATTTTGTCAAAAAAA TAAACGATAGTCCTTCTA-CA TTTT TGATAAAAGGACTATCGTTTT TTCAGTTAGAGTATT 100 313
 CT43_CH3151 3162946 .. 3162990 -  -7.4  -5.31519   ATATTCAAACAAAAA CACCTCCATTACATTTGCACAC TTA GTATGCGAATGCAA-G-AGGTG TTTTTTTCATATACC  91 90
 CT43_CH3150 3162462 .. 3162487 - -10.5  -5.14626   ACTATCAAAATAAAA         CCCCAGAAATCC AAT GG-TCTCTGGGG         CTTCATTATATATTT 100 31
 CT43_CH3147 NONE
 CT43_CH3146 3159128 .. 3159150 -  -9.2  -5.34055   ATAAACATGAAAAAA           CTCCTAACAA ATT TTGTTCGGAG           TTTTTTCAAATACGC 100 50
 CT43_CH3144 3157024 .. 3157038 -  -2.1  -5.38321   AAAGAGCATAAAAAA              GACACC CTAA GGTG-C               TATCCTCCGACTTGA  71 176
 CT43_CH3143 3156288 .. 3156309 -  -3.7  -5.15682   AAAACATAAAGAAAA           GGCATTCCA AATA TGAAACACC            CTCTTTCGTTTTATA  72 104
 CT43_CH3142 3155451 .. 3155490 -  -9.6  -3.41224   ATACCTAAAACAAAG  TTTGTTCCTTATGAATAGC ATA GC-ATCAATAAGGAACAAA  TATTAATAGTGTGTA  80 28
 CT43_CH3141 NONE
 CT43_CH3140 3154265 .. 3154285 - -10.4  -5.37865   TTAAGAATTAAAAAA            GGAGGGGA TTATC CCCCCTCC            TTTTTACGCTTGCTC 100 53
 CT43_CH3139 3152770 .. 3152787 -  -6.3  -2.62983   TTTACTTTTAGACTA             CTTGCTA AATT CAGCAAG              TAAAATATTTTTAAA  57 5
 CT43_CH3138 3150334 .. 3150368 -   -16  -4.26351   TATTAATTGAAGAAA     CCTTCTTAATTGAGGT CGT ACCCCAATTAAGAAGA     AAAAGAGTAGAAATT 100 248
 CT43_CH3137 3148240 .. 3148266 - -13.2  -5.01546   AAATGTATATAAAAA         GATCACTTGTCT TAG AAACAAGTGATC         TTTTTATTAGATAAA 100 387
 CT43_CH3133 3142126 .. 3142152 - -13.9  -5.36441   TTTTCACATAAAAAA         GCCTCTTTCTA AAAGA TAGAAAGAGGC         TTCTGTATATACAGT 100 233
 CT43_CH3132 3140809 .. 3140830 - -10.3  -5.34309   ACTAGTAAACAAAAA           GAACATTGA TATT TCAATGTTC            TTTTTGTATCTCTAC 100 83
 CT43_CH3130 3139274 .. 3139312 - -18.6  -3.86346   CTACCTTTCTATAAA   TTACTAGTTATGAAACAA GGA TCGTTTCATAACTAGTAA   TTTACTTGATTATCT 100 63
 CT43_CH3129 3138452 .. 3138474 -  -4.9  -4.84359   TGATCGGTACAAAAA           TAGTGCG AAAAAAGAG CGCACTA           AGCGCCACAAATAGA  72 23
 CT43_CH3128 3137181 .. 3137191 -    -4  -4.82901   TGCCCTTTAGAAAAA                 GAAA CAA TTTC                 GCCTAAAATGGACTT  68 101
 CT43_CH3125 3134488 .. 3134506 -  -2.4  -4.57063   TGAAAATAGAATAAA             CGTTAACA TAT TGTCAAGG             TCAAATCATTATTGT  60 390
 CT43_CH3124 3133994 .. 3134005 -    -3  -2.88023   CCATCACTATGAAAT                TGAA TCTC TTCA                 TTTACTATCCCGCTG  43 226
 CT43_CH3119 3129930 .. 3129948 -  -4.6  -5.81412   TTGATGTAAAAAAAA             TGCTTC TTTTATC GAAGCA             ATTTTAAAAAATGAT  87 15
 CT43_CH3118 3128257 .. 3128267 -    -4  -4.21194   CCGTAGTATTTAAAA                 TTCT GGG AGAA                 GTAAAACTGTTTCTT  60 168
 CT43_CH3116 3126242 .. 3126283 - -19.9  -4.89852   GCATATTCATAAAAA GCACGTTACTATTCTCATTA ACA TAA-GAGAATAGTAACGTGC TTTTAATTTCAAAAA 100 138
        arsR NONE
 CT43_CH3114 NONE
        acr3 NONE
        arsC 3123562 .. 3123594 - -12.1  -5.62045   ATACATAATAAAAAA      GAGCCAATCTCCAAC ACA ATAGAAGATTGGCTC      TTGCCTTTATTTATT 100 36
 CT43_CH3111 3122369 .. 3122404 - -13.5  -5.14698   AAACTCAAAATAAAA    CCCCAATTTCTCTAT ATTAAA ATCGAGAAATTGGGG     TTAAGTTATTTAAAA 100 35
 CT43_CH3109 3120448 .. 3120477 -  -8.1  -5.07011   TATACAAATGAAAAA       GCCGATTTCTTTAT AAA AT-AAGAAATCGAC       TTTTGGCTTAGTTAT  91 86
 CT43_CH3108 3119300 .. 3119357 - -21.1  -5.93809   TTCCCATAAAAAAAA CCGACAACTTCCATAATTCAATGAT TTTATATC ATCATTGAATTATGGAGATTGTCGG TTTCACTTCAACTAA 100 476
 CT43_CH3107 NONE
 CT43_CH3106 NONE
 CT43_CH3105 3114389 .. 3114407 -    -4  -4.11216   TTCTGATTTTTAAAA             CATAATAA ATT TTATTATA             CAACAGCAATTTTTA  58 68
 CT43_CH3104 NONE
 CT43_CH3103 3112327 .. 3112351 -  -3.6  -5.28414   TAATAAACATAAAAA          CTCGAGCA TTTTCATTG TGCTCAAG          TTTTCATTTACGTCT  72 41
 CT43_CH3102 3111468 .. 3111491 -  -9.6  -5.20222   AGCAAATAAATAAAA          GAGCCAATTC ATAC GAGTTGGCTC           TTTATTCTCTCTTCC 100 87
       gerSB 3107872 .. 3107889 -  -3.5  -3.05022   GGCTTGATATATACA             CTAATAA ATTA TCATTAG              GATCTAAATCGATAC  46 140
 CT43_CH3097 3106387 .. 3106410 - -12.6  -5.05113   GTTATACAAAGAAAA          CGATACTTCA CTAT TGAAGTATCG           CAAAAAAACTATTTA 100 78
 CT43_CH3096 3105720 .. 3105736 -  -4.5  -3.89971   TACAACGATACTAAA              TATACAA ACT TTGCATA              AAAAAATGATTTTAT  58 50
 CT43_CH3095 3105247 .. 3105267 - -10.5  -5.98675   TAGAAAAATAAAAAA            GCACTCCTT TTC AAAGAGTGC            TTTTAAAAAACATAT 100 104
 CT43_CH3094 NONE
 CT43_CH3093 NONE
 CT43_CH3092 3102898 .. 3102933 -    -4  -3.18991   ACAAAATAAATGACA    TAGGAGGCCTTATTCT TTTA AAAGGAAGACCCCCTA     TATATTACTTATTTT  49 169
 CT43_CH3091 3101657 .. 3101692 - -20.7  -4.15222   AGTTTTTTTAACAAA    GATTAGAGCCCTCCT ACAAGA AGGAGGGCTCTAATC     TTTCATATAAATATT 100 154
 CT43_CH3090 NONE
 CT43_CH3089 3099519 .. 3099539 - -11.1  -4.54727   CTTTCTAAATCAAAA            CCACCGGTA TAA TGCCGGTGG            TTTTCTTTCTACAAT 100 303
 CT43_CH3084 3094179 .. 3094206 -   -15  -4.68994   ATCACCATTTAAAAA        GATGCTCCTGGA TTTA TCCAAGAGCATC         TTTTATAAAGCTTTA 100 88
 CT43_CH3083 3092203 .. 3092245 -   -13  -5.72207   TTCAAATCAAAAAAA TAGATTACCTGTACACTAAA AAG TATAGCGCACAGATAATCTA GTTGTTTTTGAGATT 100 50
 CT43_CH3082 3090238 .. 3090260 -  -5.5  -5.12707   CGAAAGCGCAAAAAA           CACCGATGC TTTTC GCTTCAGTG           TTTTTTGCGCTTTAC  76 185
 CT43_CH3081 3088729 .. 3088741 -  -2.7   -3.0682   TTCAATTACAAATGA                CAAAA TTT TTCTG                TTTTTCCTTTTTGCC  43 40
 CT43_CH3080 3088349 .. 3088376 -   -15  -5.40072   GTTTCTGTAAAAAAA        GCTGTTGAAAGG ACTC CCCTTCAACAGC         TTCTACATTATTAAC 100 36
 CT43_CH3078 3086280 .. 3086306 - -18.2  -5.31275   TTTCATCACAAAAAA         GCCGTTTCACTA ATT TAGTGAAACGGC         TTTTTTTTAAGCGTT 100 32
 CT43_CH3076 3084835 .. 3084857 -  -8.4  -5.69473   TACATCATAAAAAAA           CCGCTCCACT ACT AGCGAAACGG           TTTCCTTCTGCTTAT 100 125
 CT43_CH3075 NONE
 CT43_CH3074 NONE
 CT43_CH3073 3082830 .. 3082847 -  -8.5  -4.84274   TAATCATATGAAAAA             GCCTATT TTAA AATAGGC              TTTTCTATTACCTCT  93 33
 CT43_CH3072 3081359 .. 3081395 - -13.9  -3.53224   TATCCCGCTTTTAAA    CAAAAGAAGCCCTCTTT TTT ACAGACGGCTTCTTTTG    TTTAACTTTATCTTA 100 49
 CT43_CH3070 3080394 .. 3080426 -  -7.9   -5.4505   TTTTGTAAGAAAAAA      GGTATATTTTTCATA TCT CACGAACAATATACC      TTTCAAAACACGAAT 100 40
 CT43_CH3069 3079299 .. 3079327 -  -8.3  -3.34013   GATTGGTTCAACTAA        TAATCAGTGAG AAACCCA CCCACTGATTA        AAGTTTCACTTTATG  71 177
 CT43_CH3068 3077948 .. 3077978 - -15.6  -4.96848   TCCTGCACATAAAAA       GCACGCGTTCGATT ACT AATCAAACACGTGC       TTTCAAAACAACTAT 100 76
 CT43_CH3066 3076536 .. 3076554 -  -5.2  -5.33848   ACCATAATGAAAAAA             GCCCTTCA TTT TGACGGAC             TTTTCTAATTTCAAG  84 36
 CT43_CH3065 NONE
        sipU 3074994 .. 3075033 - -11.7  -4.42806   CTATCTTCAAATAAA  CAGAGGCCATTTTGA AAAGTAATAA TCAAAATGACCTCTG   TCTTTCTTAATTGAA 100 106
 CT43_CH3063 3074018 .. 3074043 - -13.5  -4.43949   AAAAGTAAATATAAA         GAGCATGTATT GATC AATACATGCTC          TTCTCATAGTTATTC 100 106
 CT43_CH3062 NONE
 CT43_CH3061 NONE
 CT43_CH3060 NONE
 CT43_CH3059 NONE
 CT43_CH3058 NONE
 CT43_CH3057 NONE
         pcP 3067978 .. 3067988 -    -4  -3.54543   ACGTACTTCTTCAAA                 TTGT TGC ACAA                 AAATCACCTCTATGT  51 99
 CT43_CH3055 3067213 .. 3067237 - -10.1  -5.65927   TATTCAAACAAAAAA          CTGAGGTGT TCTCTAT ACACCTCAG          TTTTTCATAAAAATA 100 46
 CT43_CH3054 3064824 .. 3064856 -  -7.1  -4.20888   TTAACTCAAAAAATA      TATCACTGCACAATA TGT TTCCATGCAGTGATA      CTATTTTTACTGTGC  76 32
      lepB_1 3064218 .. 3064232 -  -5.8  -4.86731   GTTTTTTAAAGAAAA               TAAAGT GAA ACTTTA               ATAAGTGGGGTTTTG  78 53
 CT43_CH3051 3062745 .. 3062763 - -14.6  -4.30014   GTGACTAACGGAAAA             GAGGTGGC AAA GCCACCTC             TTTTTTGTTCCGTTT 100 181
 CT43_CH3049 NONE
 CT43_CH3048 NONE
 CT43_CH3047 3057621 .. 3057643 - -13.5  -3.33214   ACTCCAATTACAATA           GCCTGGCTA TAATC TAGCCAGGC           TTATAATATTATTGT 100 34
        yycF NONE
 CT43_CH3045 3055590 .. 3055606 -  -2.3  -4.10478   TAAACATAAAAAAAC              CCCTTTA TAT TAAAAAG              ATTAAAATATATACC  52 50
 CT43_CH3044 3054677 .. 3054713 -  -8.3  -5.35815   TATATTAAACAAAAA   CGCTA-TCTTTTCCTA TGATTC TAGAAAAAGAATAGCG    TTTTTTTACTCGTCC 100 87
 CT43_CH3040 3050806 .. 3050827 -    -8  -5.39755   CATAACTATAAAAAA           TACCGCCC AATTTA GAGCGGTA            TTTTTTATTTTTCTA 100 30
 CT43_CH3038 NONE
 CT43_CH3037 NONE
 CT43_CH3036 3047080 .. 3047096 -    -3  -3.61812   ATAATATAATTATAA              GTAACA ATCCA TGTCAC              TATTTGACGGTAAAT  50 118
 CT43_CH3035 NONE
 CT43_CH3034 NONE
 CT43_CH3033 3044958 .. 3044970 -  -4.9  -3.49419   TTCTCTTAGAAAAAC                GTATT TTT AATAC                CTACGCAACCCTTTC  56 19
 CT43_CH3032 3044524 .. 3044553 -  -5.9  -4.65263   ACTTCGCAAAACAAA       GAAGAGAATAT CGTAATGT ACATTCTCTTC        TTGAGGTTTACCCGT  74 41
 CT43_CH3029 3041441 .. 3041479 - -10.5  -4.91109   CTTTTATTACAAAAA   CCAAAAGGATCTCCTTC TATAT GAAAGAGATCCTTTTTA   TTGTTAACTTACTTT 100 29
 CT43_CH3027 NONE
 CT43_CH3026 NONE
 CT43_CH3025 3039980 .. 3039998 -    -6  -4.91109   TCCTCATCACAAAAA             GACTAACA ACA CGTTAGCC             TCTCTTTACACATTT  78 31
 CT43_CH3024 NONE
 CT43_CH3023 3037945 .. 3037988 - -12.8  -3.31261   ATAGATTAAAAAGTA CTTCAACACCT-TGCAATTAT TTA ATAATCGTATAGGTGTTGAAG TTTTATAATCTTAGT 100 136
 CT43_CH3021 NONE
        dnaI 3034947 .. 3034961 -  -2.9  -3.60925   GGTGAAAAATATTAA               TAAAC ACATA GTTTA               TCATTCAACATTATG  50 127
 CT43_CH3019 3033620 .. 3033648 - -14.8  -2.65815   GGTAGATTCATATTA        GGACTCTGTTTA ACCAA TAAACAGAGTCC        TTTTTTCACAAGATT 100 46
 CT43_CH3017 NONE
 CT43_CH3016 3031452 .. 3031470 -   -11  -4.70319   TTATTAAAAGTAAAA             GAGGTGCA ATT CGCACCTC             TTTTTGCATGTATTG 100 46
 CT43_CH3014 NONE
 CT43_CH3013 NONE
 CT43_CH3012 3027775 .. 3027803 - -10.4  -5.67283   AATTGAAATAAAAAA        GATGACCTCAGC CACAC GCTAAAGTCATC        TTTTTCTACCTTCTT 100 39
 CT43_CH3011 3026856 .. 3026892 -  -7.4  -5.30616   GCATGCAAATAAAAA    GAGAACATGTATTCAC TTTTT ATGTAAACATGTTCTC    ATAAACATTTAAAAT  91 92
        adP2 3025337 .. 3025358 -    -3  -5.18726   GTCCCACAACAAAAA           GGATGTCA TGCAAC TGACATCT            TTTTTAAACTAAACT  71 201
 CT43_CH3009 3023374 .. 3023402 - -11.9  -4.36729   ACTAATAATGTAAAA        GGCCCTATAAT TTAGACT ATTATAGGGCC        TTTCCTTTTAATATT 100 33
 CT43_CH3008 3022680 .. 3022721 -  -9.8  -5.41746   AATCTCTCAAAAAAA GGTAAACAAACATATT CCATAAAGCT AATATGTTCGTTTACC  TTTTTCTATTTCAAA 100 89
 CT43_CH3007 3019522 .. 3019565 - -17.8  -4.56791   ATTTAAAAATATAAA GCCAATATATCCCTGTTCTA TAAT TAGAACAGGGATATATTGAT ATAGTTTAATTTTTA 100 104
 CT43_CH3005 3016471 .. 3016505 - -20.2  -4.63527   TTACTATTTTAAAAA     GCTGAAGAAGCCGCTA AAA TAGCGCCTTCTTCAGC     TTTTTATATTTTTTA 100 48
 CT43_CH3004 3014779 .. 3014819 -   -13  -3.21394   AACGAAAGAAATAAC GTAACAAAAAGACTCCTAT ATTC ATAGGAGTCTTTTTAT-AC  TTCTACGTTGCTTTT 100 40
 CT43_CH3000 NONE
 CT43_CH2998 3010971 .. 3010981 -    -4  -2.88708   ATACATTACATTATA                 CTTT TGT AAAG                 CCCATCCTTTTTGAT  47 10
 CT43_CH2999 3010495 .. 3010529 -  -5.3  -3.70694   AAATATATATAAAGA    TTAGAGAAGATGATTT CCCA ATAT-ATCTTCTCTAA     GAATATCACTCTTTG  59 41
 CT43_CH2996 NONE
 CT43_CH2995 NONE
 CT43_CH2994 NONE
 CT43_CH2993 3007955 .. 3007965 -    -4  -3.57144   CCTGCTATGTTCAAA                 TCAT TTA ATGA                 CTAAATCCGCCCTAT  53 15
 CT43_CH2992 3007302 .. 3007339 - -13.8  -5.04987   AATAGCTCTAAAAAA   TAAAGACTGTACCTTT AAAATG AAAGATACAGTCTTTA    TTAATAACTTTTTTT 100 39
 CT43_CH2991 3006748 .. 3006771 - -11.1  -4.91873   GATACCAAGTAAAAA          GAGTCCTTC ATACGA GAAGGACTC           TTTTTATTTCACATT 100 39
 CT43_CH2988 3004032 .. 3004061 - -13.1  -5.61913   AATAAACACAAAAAA       TTGCCA-CCAGTTA GCT TAACTGGTTGGCAA       TTTTTTAACGAGAAT 100 30
 CT43_CH2987 3002391 .. 3002410 -  -5.1  -3.87364   CCGATAACAACATAA            TATTCGT TATAAT ACGAATA             TTCAATCTTTTTCAA  60 241
 CT43_CH2986 2999891 .. 2999929 - -15.4  -4.95547   TTCACAAGAAGAAAA   GAGCTGTCATAAGTCAGT TTC ACCGACTTGTGGCAGCTC   CTCTTCGTTTTACCT 100 45
 CT43_CH2985 2998562 .. 2998592 -  -9.2  -5.27335   CTCTTTAAACAAAAA      CTCCCCTTAAATC GAAAAT GATT-AAGGGGAG       TTTTATATACGATGC  95 43
 CT43_CH2978 NONE
        rocB 2990224 .. 2990255 - -13.2  -4.03078   TCACTACATGATAAA      CGGCCAAACTCATAT AAA AT-TGAGCTTGGCCG      TTCCGCTTTTTAATT 100 105
        proB NONE
        proA 2986020 .. 2986055 - -16.3  -3.91846   AAAATCAAACTTAAA    GTCGCTACAACCGCA TACGGT TGCGGTTGCAACGAC     ATTTCTAGCTTCTTT 100 250
 CT43_CH2972 NONE
 CT43_CH2971 NONE
 CT43_CH2970 2982088 .. 2982122 - -11.7  -5.84381   CCAGTAATAAAAAAA    GAGGATACATGTTTGC TTTT ACAA-CATGTATCCTC     TACTTATATATTACG 100 36
 CT43_CH2969 2981377 .. 2981399 - -10.7  -4.77896   GAATTAATGTAAAAA           GACAGACTA TTTAT TAGTCTGTC           TTTTTTACTTTACAG 100 104
 CT43_CH2964 NONE
 CT43_CH2963 NONE
 CT43_CH2962 NONE
 CT43_CH2961 2973007 .. 2973025 - -10.3  -6.32017   AAGAAATAAAAAAAA             CGTCCGA TATAT TCGGACG             TTTTTTTTGTCTACT 100 39
 CT43_CH2959 2969942 .. 2969961 -  -6.4  -5.53288   TGTAATTCAAAAAAA            GCTTAGGA TTTC TCCGAAGC             ATTTTTTGTATGTTA  93 124
 CT43_CH2955 2966264 .. 2966305 -    -4  -3.83459   CATAATATCAAAACA TTTGCAACAGTATATTAA TACGGC TTAATATACTGTTATTAA  AACTCCTCACTTCAA  56 120
 CT43_CH2954 2964590 .. 2964624 -    -3  -5.52384   CTTCTACTAAAAAAA    TAAAAGCCAG-CCTC AATAAA GAGAACTGACTTCTA     TTTGGATCATTATAG  77 44
 CT43_CH2953 NONE
 CT43_CH2952 2963151 .. 2963177 -  -9.6  -4.96848   GTTGCGATACAAAAA         CAAGACTAATAT AAT ATGTTAGTCTTG         TTATGTACTTTGTGT 100 26
 CT43_CH2950 NONE
 CT43_CH2949 NONE
 CT43_CH2948 2961098 .. 2961118 - -11.2   -5.7946   TTTCTAATAAAAAAA            CTGCCTCT TATTT AGAGGCAG            CCACTTTCAAGTCTT 100 12
 CT43_CH2946 2956492 .. 2956518 - -15.3  -5.30339   ACTAAAATACAAAAA         GTCCCTACTGA ATAAA TCAGTAGGGAC         GATATTTATCGCGGT 100 360
 CT43_CH2945 2954703 .. 2954728 - -16.3  -5.24129   TTTTTGTACAAAAAA         GTCCCTACTGA GCGC TCAGTAGGGAC          GATGTTTATCGCGGT 100 246
       aroC2 NONE
       hisC2 NONE
        tyrA NONE
        aroA 2949942 .. 2949962 - -10.5  -5.80364   ATTTTAACAAAAAAA            GCAGATACA TCA CGTATCTGC            TTTCTATCCTTATTA 100 38
 CT43_CH2940 2948487 .. 2948500 -  -2.4   -4.4773   TTACATGAATTAAAA               GTCA AGTGCG TGAC                AAAGTATAACTGTGA  58 217
 CT43_CH2939 2947844 .. 2947870 -  -7.5  -2.57132   TCCTGTCCTTATAAC        GCTA-TAGAATC AAAT GATTCTAATAGC         ATTCCAACAACTTTC  64 8
 CT43_CH2938 2944461 .. 2944484 -  -8.2  -5.07275   TTATATATAGAAAAA          CTGTAGAGAA ATCA TCCCCTACAG           TCTTCACTTATTTCG  91 33
 CT43_CH2937 2942519 .. 2942538 - -12.2  -5.60993   TTCTCGACAAAAAAA            CTCGCTCT AAAA AGAGCGAG             TTTTTTCATGATATA 100 41
 CT43_CH2936 2940028 .. 2940061 - -16.3  -3.95073   TGGTATATTTACAAA     TAAAAAGCGCTATTC ATAT GAATAGCGCCTTTTA      TTATTTAGCTTCCCC 100 26
 CT43_CH2931 2935458 .. 2935480 -  -4.3  -3.41222   TCCTAAGTTGAAAGA          CCTATTAGTT AATA AAC-AATAGG           ACTTTAGTATAAAAT  54 86
 CT43_CH2930 2934891 .. 2934911 - -10.5  -4.96848   CTTCTTATATAAAAA            TCCCTACAA ACA CTGTAGGGA            TTTATGTCTAAATCA 100 77
 CT43_CH2929 NONE
 CT43_CH2928 2933745 .. 2933765 -  -2.6  -5.20216   TACACCATTAAAAAA            CTGTACAT GTTAA ACATACAG            TTTTTTAATGGTATC  69 92
 CT43_CH2927 NONE
 CT43_CH2926 NONE
 CT43_CH2925 NONE
 CT43_CH2924 NONE
 CT43_CH2923 2931100 .. 2931116 -  -2.3  -3.31232   TCTTTCATACAAAAC              TTCCTCT CTT AAAAGAA              CAACACCATATGTTC  44 17
 CT43_CH2922 2930411 .. 2930423 -  -3.3    -4.386   GAATCCGCCATAAAA                GATGG CTA CCAAC                TATTGCACATTCAAT  62 170
 CT43_CH2920 2928889 .. 2928916 -  -5.7  -5.14563   CTTTCTATGAAAAAA        GACTAACTCTT AATAAA AAGAGCTAATC         TCATTACGCCGTTAT  83 29
 CT43_CH2919 NONE
       aacC7 NONE
 CT43_CH2917 NONE
 CT43_CH2916 NONE
 CT43_CH2915 2924941 .. 2924961 -  -6.2  -5.25699   AGTACACAAGAAAAA            CTCCTTCT TATTT AGAAAGAG            TTTTTCACTATCCAT  84 101
 CT43_CH2914 2924135 .. 2924155 -  -6.9  -4.06904   TGATTCAATCATAAA            CGACTGAAC TTG ATTCAGTCA            ATATTATTTCATAAA  71 192
 CT43_CH2913 NONE
 CT43_CH2912 2922590 .. 2922625 - -20.8   -5.7946   TGTGCAATAAAAAAA    CCAAAGGCATTTTATC TGTT GATAAAATGCCTTTGG     TTTCTCCAATCAGCA 100 167
 CT43_CH2911 NONE
 CT43_CH2910 NONE
 CT43_CH2909 NONE
        ssuD 2918623 .. 2918645 - -11.3  -4.31692   AATTTACGATGAAAA           CCCGCAAGC GAATA ACTTGCGGG           TTTTTTATCCCGTAT 100 93
 CT43_CH2906 2916099 .. 2916125 - -14.6   -5.0065   TATTTATAAACAAAA         GATACACCACTT AAA AAGCGGTGTATC         TTTCTCAGGTTTCAC 100 40
 CT43_CH2901 NONE
 CT43_CH2900 2913511 .. 2913538 -  -8.5  -5.24129   TTCTTTTACAAAAAA        GAGAGTCATTC AATTAA GAATGTCTCTC         TTTCTAAAAATTCGA  95 29
 CT43_CH2899 NONE
 CT43_CH2898 NONE
 CT43_CH2897 NONE
 CT43_CH2896 2910966 .. 2910981 -  -7.6  -6.23317   ATAAAAATAAAAAAA              CTTCTC AAAT GAGAAG               TTTTCATATAGCATG 100 29
 CT43_CH2895 2910341 .. 2910368 - -14.4  -3.74693   CTTCATGCTACGAAA        TAAAAAGCTGAC TTTT GTCAGCTTTTTA         GAAATGGCACTTCAA 100 15
 CT43_CH2886 2903877 .. 2903900 -  -8.2  -6.04324   GTAAAAAATAAAAAA          GCTGACTTCC CTTT AGAAATCAGC           CTTTATAATTTGATC 100 63
 CT43_CH2885 2903379 .. 2903403 -  -7.1  -5.68438   CTATTAAACAAAAAA          GGCTACGGGAA CTT CTCCCCTAACC          TGATTAAATATTTAT 100 40
 CT43_CH2884 NONE
 CT43_CH2883 2902174 .. 2902193 -  -5.6  -5.37593   GCGCAAACTAAAAAA            GCCGCCTA TTTA TTGGCGAC             TTCAATCTTTTTATA  84 11
 CT43_CH2882 2901084 .. 2901102 -  -2.4  -3.21696   TGAGAATAATACACA             CCGATAAA CTA TTTTTCGA             ACTAACGATTTATCC  44 59
 CT43_CH2881 2900680 .. 2900705 - -12.7  -5.12474   CATAACATATAAAAA         GGACTGCTTAC AAAT GTAAACAGTCC          TGCTACATTCATTTC 100 34
 CT43_CH2880 2900206 .. 2900224 -  -8.8  -5.37043   ATGTCATATAAAAAA             GCTGCCCC AAA AGGACAGC             TTTAAATATGTATAT 100 40
 CT43_CH2879 2899727 .. 2899758 - -10.2  -5.88197   TGAAACAGAAAAAAA      CCAGTAGGAAGTGA TTAC TCTTTTCCTACTGG       TTGAAATGAAATTAA 100 37
 CT43_CH2878 NONE
 CT43_CH2877 NONE
 CT43_CH2876 2898038 .. 2898062 -   -13  -4.93365   GTTTACAACTAAAAA          CACCTCACTT AAAGA AAGTGAGGTG          TTTTTGAAATCACTT 100 47
 CT43_CH2874 2894835 .. 2894869 - -11.6   -5.4251   CCTACATACAAAAAA     GGCTCTTACACATCTT ATG AAAATGCGCAAAAGCC     CTTATATATCAATAT 100 34
 CT43_CH2873 NONE
 CT43_CH2872 NONE
 CT43_CH2871 NONE
 CT43_CH2870 2891044 .. 2891090 - -17.7  -2.93236   TAATCTAACACCATA CAT-ACGAAAAAGCTCCTTTCC AATT GGAAAGGAGCTTTTTCATTACG CTTTTGATGTTTCGC 100 21
 CT43_CH2868 2889642 .. 2889663 -  -4.5  -3.92869   TCATGTATGTATAAA           CCCTCA-ACA TAA TGTATGAGGA           TTTATCAAAAAATGC  58 42
 CT43_CH2867 2888592 .. 2888628 - -17.6  -3.41134   ATATTTACCAACTAA   TAAATGCGCCCTAG-AC TTAC GTACTAGGGCGCATTTA    TTTTTTAGTATGTAA 100 50
 CT43_CH2865 2886711 .. 2886732 - -11.7  -6.04324   TTAAAAAATAAAAAA           GGATTGATC AAAA GATCAATCC            TTTACTCTACTTCAT 100 27
 CT43_CH2864 NONE
 CT43_CH2863 NONE
 CT43_CH2862 NONE
 CT43_CH2861 NONE
 CT43_CH2860 2881621 .. 2881646 -  -5.6    -5.186   GAAAATATATAAAAA         TGCTCGAGAAT CATTT ATTCT-GAGCA         TTTTTATGGTTGTTA  80 47
 CT43_CH2859 NONE
 CT43_CH2857 NONE
 CT43_CH2856 2878371 .. 2878391 -  -5.5  -4.64657   CTAAAGCTGCAAAAA            GGACTAA ATTTTCA TTAGTCC            TTTTTCACATTTATA  71 19
        prsA 2877314 .. 2877339 - -11.3  -5.20633   AAAAATAGAGAAAAA         GACAACCGATA TTTC TATCGATTGTC          TTACATTCCATTTAT 100 40
 CT43_CH2854 2875255 .. 2875282 - -12.2  -4.51378   ATTCAGACTACAAAA        CAAAAAGCTTAC TTTA GTAAGCTCTTTG         GAAAAAATATTTATT 100 36
 CT43_CH2853 2874248 .. 2874290 - -12.9  -3.30338   AGAATGCTTGGACAA TGGAAACCAGACAGTCGAT TTTGT ATTGACTGCCTTGTTTCCA TAGATAGTTCTCTAT 100 37
 CT43_CH2852 2873798 .. 2873832 - -13.1  -4.72333   AACTACATTTAAAAA     CGGTTAGTCATTC TCTAAATAT GAATGACTAACCG     TCTTCCAGCTTCTTC 100 60
 CT43_CH2851 2873202 .. 2873224 - -12.2  -5.80364   ATTCCAATAAAAAAA           CAATCCATTT TAA AAATGGATTG           TTTTTTTATTTCTGT 100 215
 CT43_CH2850 NONE
 CT43_CH2849 2871772 .. 2871796 - -12.3  -3.10354   TATATTCATTCAATA          TAAAAAGCCCA ATC CGGGCTTTTTA          ATTTGGCAAACTAAT  90 23
      divIC2 2870137 .. 2870183 - -28.4  -5.04597   ATTCATACATAAAAA GCTGCACCTCCAATTGTTAGAC GGT GTCTAACAATTGGAGGTGCAGT TCAATGGCTAACTGT 100 48
 CT43_CH2846 2869545 .. 2869575 - -17.8   -5.7946   TGTGGAATAAAAAAA       TCCAGCCATAAGAA TGA TTCTTACGGCTGGA       TTTTGTCTATGATTG 100 32
 CT43_CH2845 NONE
 CT43_CH2844 NONE
 CT43_CH2843 2865616 .. 2865652 -    -9  -3.96618   TCTAACTTTAAATAA   GAAAAACAGACTATCAC ATAC ATGA-AGTCTGTTTCTC    CATTCTTTTATTTTT  85 33
 CT43_CH2842 2864908 .. 2864923 -  -6.2   -4.6759   AATAGCGCAAGAAAA              TGTTTC CATA GAAACA               TGTTAATTATACAAG  76 114
       dltD2 2863527 .. 2863551 - -15.1  -5.58454   TCTATACTAAAAAAA          TCGGAACGGCT CAT AGCCATTCCGA          TTTCTATACTTTATT 100 36
 CT43_CH2838 2861137 .. 2861150 -  -3.9    -4.788   AAACCAATTTAAAAA               GAATA TGCA TATTC                TTTTTTAGGTAACCT  68 5
 CT43_CH2837 2860430 .. 2860471 -  -8.9  -3.80625   TTTTTATAACGGAAA CAAGCAACCATCTGTTCCA AATA TACAACAAATGCTTGCTTG  ATTTATTTAAATTTA  81 147
 CT43_CH2835 NONE
 CT43_CH2834 2858586 .. 2858613 -  -9.2  -4.84527   TGCACATACTAAAAA        GAGCTGCTGATA TTAT TCTCAACAGCTC         TTTTCTCTACTCATC  93 32
 CT43_CH2829 2853610 .. 2853630 -  -2.5  -3.14051   GTATGTGTATCAATA            GTCGTAAAG ACT CTTTGTGAC            CTCATCCGTTTAACA  43 27
 CT43_CH2828 NONE
 CT43_CH2827 NONE
       dapA1 2850746 .. 2850760 -  -5.7  -3.64703   TCCTCCTTATTTAAA               CAGCT GCATG AGCTG               CAATATTTGATAAAA  62 6
 CT43_CH2825 2849159 .. 2849191 -    -5  -4.87592   TTATATATAAGAAAA      CGGACAACTA TTATCAAACTTTC TAGTTGTCCG      CATCTTTCATTATTT  72 73
 CT43_CH2824 2847570 .. 2847586 -  -2.9   -2.8478   AGTATGCGATGAAAT              GGAGGCA ATA TACCTTC              TTTTAAATTAAGAAT  43 57
 CT43_CH2823 2847120 .. 2847144 - -10.2  -5.37043   ATTTCACATAAAAAA          CGTTTTAAAC ATAAA GTTTAAAACG          TTTTTTATTCAATGC 100 34
 CT43_CH2821 2845571 .. 2845600 -  -2.3  -2.50545   TTCCGATAATAAAGC       GAAAATAACTA TAGTTGGC TAGTCATCTTC        TCTACATTTATTATA  39 215
 CT43_CH2820 2844838 .. 2844859 -    -6  -5.93809   TTTTCATAAAAAAAA           TCATCTAA AATGAA TTAGATGA            TCGAAATATATGTTT 100 44
        ppaC 2843733 .. 2843761 - -16.9   -5.4251   TTTAGAGATAAAAAA        GGACAAGTAGCCA ATC TGACTACTTGTCC        TTGCTGTTTTTGTGT 100 52
 CT43_CH2818 2842019 .. 2842042 - -12.6  -3.11784   ACGAATAAACAATTA          TAAGGATAGC TAAC GCTATCCTTA           TTTTAATTCGTTAAT  90 23
 CT43_CH2816 2841046 .. 2841066 -    -9  -5.54885   AACACGAACAAAAAA            GCATCACC TTTTT GGCGATGC            TTAAAAACTCTATTT 100 92
 CT43_CH2815 2839930 .. 2839955 -    -7  -3.04755   CCAAACATTAAATCA         TCCCAAAATT TATTAC AATTTCGGGA          ATGCCCACAATGACA  62 175
 CT43_CH2814 2839171 .. 2839196 -  -7.7   -5.9667   AAAAATACAAAAAAA         GAAAGCATCTA ACTC TAGATGTTTTC          TTTTTTATTGAAAAC 100 514
       recQ2 NONE
 CT43_CH2810 2834318 .. 2834343 -  -9.9  -5.42265   TGAAAGTATAAAAAA         TAGATAATGGA TTAT TCCACTATCTA          CTCTTTAGCTACTCT 100 40
 CT43_CH2809 NONE
 CT43_CH2808 2833383 .. 2833426 -   -25  -4.99035   TTAGCCATAGAAAAA CTGCACCCCCAATTGTTAGAC TGT GTCTAACAATTGG-GGTGCAG TTCATTAATCCCTAC 100 30
 CT43_CH2807 NONE
 CT43_CH2806 2831742 .. 2831754 -  -2.7  -3.18839   ATGTTGAAATATATA                GACTT ACA AAATC                CGTCTGGCCATGCGT  45 292
 CT43_CH2804 NONE
 CT43_CH2801 2826560 .. 2826597 - -12.3  -4.99056   GAATACAATTAAAAA   TCCTACTGATAAACAAA AAAT CTCGTTTATCAATAGGA    TTCATTAGCTATATA 100 72
 CT43_CH2800 2826001 .. 2826020 -  -3.7  -6.11229   AGTAAAATAAAAAAA            CAATTAA ATTAGG TTAATTG             TTTTTCAAATGCAAA  91 45
 CT43_CH2799 NONE
 CT43_CH2798 NONE
 CT43_CH2797 2823603 .. 2823628 - -10.5   -5.4593   TTAAAATAAGAAAAA         GGTAGCATGAA TTTT TTCTTGCTACC          GAAAAATATTTATTC 100 35
 CT43_CH2796 NONE
 CT43_CH2795 NONE
 CT43_CH2794 2821918 .. 2821934 -  -3.7  -2.67902   TAATATTATTATAAT              CTCTTTT CAA AAAAGTG              CTGACTATGACCTTT  44 2
 CT43_CH2793 NONE
 CT43_CH2792 NONE
 CT43_CH2791 2820345 .. 2820376 - -14.8  -3.69621   ATGTATAACTGTAAA      TAGCTAGTAAAATA AAGT TATTTTACTAGCTA       TTTATTAGTTGCTTT 100 23
 CT43_CH2790 NONE
 CT43_CH2789 2819333 .. 2819356 - -11.2  -5.55769   TTTCATAATAAAAAA          CGATTAGTTT TATT AAACTAATCG           GTAAGATTCACAAAG 100 64
 CT43_CH2788 2818503 .. 2818521 -  -5.3  -3.02511   TCTATGTTCGCAAGA             GTACGGA TTCTC TCCATAC             TCTTTTCCTAGCTGT  54 57
 CT43_CH2787 2817224 .. 2817240 -  -4.4  -5.34381   AAAGTTAAATAAAAA              GCATCC TATTT AGATGC              TTTTCTAATGTATAA  81 52
 CT43_CH2786 2815337 .. 2815373 - -16.9  -5.22006   TTATCATAATAAAAA    GGGTAGTGTATGAAT CTTATGT ATTCATACACTACCC    TTTTTTATTAATAGA 100 109
 CT43_CH2782 NONE
       clpP1 2812328 .. 2812355 -  -7.8  -5.16071   AAGGATTAATAAAAA        GGCTAGAGAA TTAATATG TCCTCTAGCC         TTTTTCATCTTATTT  91 35
       proV2 NONE
 CT43_CH2778 2809223 .. 2809246 -  -6.2   -5.4833   GGATGCAATAAAAAA          CACACTTTGTA GTA TA-AAAGTGTG          TTTTTTGGTCATTAT  88 37
 CT43_CH2776 NONE
 CT43_CH2775 NONE
 CT43_CH2774 2807130 .. 2807140 -    -4  -4.19947   CAAAATAACTACAAA                 TATG ATC CATA                 ATACTAATAAAATTA  60 71
 CT43_CH2773 NONE
 CT43_CH2772 NONE
 CT43_CH2771 2805846 .. 2805885 - -17.6    -3.671   AAATAAATGCTTAAA  TAAACAAGAAACCATTTA GTAG TAAATGGTTTCTTGCTTA   TTAGTTATTTCATTA 100 61
 CT43_CH2768 NONE
 CT43_CH2767 NONE
        acoA NONE
        acoB NONE
        acoC NONE
        acoL 2798908 .. 2798950 - -10.1   -5.5112   TCTATTAATAAAAAA TCAAACCACTATTCTCTTA TTTGT TTAGAGAATAGTGGTTTAT TATATTTCCATTTAA 100 37
 CT43_CH2761 2797445 .. 2797463 -  -3.2  -2.59298   TACTCCATACAACAT             TATTTCTT CAC AAGTAATA             CATCTGCTGCGCAAA  42 6
 CT43_CH2760 2796947 .. 2796973 -  -8.2  -4.64598   TAATTACTTTAAAAA         TAAAAGCAGATT AAA AATCCACTTTTA         TTTTTTTCGCAAGAT  85 9
 CT43_CH2759 2796204 .. 2796225 - -10.2  -4.35044   GTATCTAAATAGAAA           GACCAGTC TTATAC GACTGGTC            TTTTTACATTCATAC  93 62
 CT43_CH2757 2794675 .. 2794689 -  -2.8  -3.64609   TATAATCATGTCAAA               CTCCTT TCA AATGAG               TATACTGGTGCTATT  48 1
 CT43_CH2756 NONE
 CT43_CH2755 NONE
 CT43_CH2754 2793518 .. 2793531 -  -3.9  -2.65376   AAACTGAATAAAAGC               GTTTT CAAT AAAAC                TAGAAAGACGACACA  46 64
 CT43_CH2753 2791576 .. 2791594 -  -6.1  -5.38054   GCCCACAAAGAAAAA             GTAGATT ACAAA AATCTAC             TTTATAACTTATATT  88 27
 CT43_CH2752 2791042 .. 2791087 - -11.5  -4.89477   CTTTGAACAAGAAAA TAAAGGTGAGTACATATTA TACATGAC TAATATGCGCTCACCTTTA TTTTTTAAAGATTTT 100 162
 CT43_CH2751 2789291 .. 2789326 -  -9.3  -5.28942   TATGGTAAATAAAAA    GAATCCATTTTGA AAAAGATTGA TCAAAATGGATTC     TTATCCAGCAGGTTT  95 108
 CT43_CH2749 2787748 .. 2787777 -  -5.1  -4.03413   ACCGGGTTATATAAA       TAGCACACCTT CAATAAGT AAGGTGTGTTA        TTTTACATCTATAAA  62 155
        kynU NONE
        kynB NONE
        kynA 2784152 .. 2784185 - -12.7  -5.27335   GTGCTCAAATAAAAA     TAAACCTGTCAG-CCA TAA TGAACTGACAGGTTTA     TTTTTATAATTTCGT 100 29
 CT43_CH2744 NONE
 CT43_CH2743 2782274 .. 2782288 -  -4.3   -5.1417   GTAGAAAACCAAAAA               CAGTT CAAAT AACTG               TTGAAAAATTTAAAT  76 249
        sleB NONE
 CT43_CH2739 2779147 .. 2779168 -    -8   -4.7173   TATTATACTTAAAAA           CCTCGCAC AATTAA GTACGAGG            CTAATTTCATTTATT  85 32
 CT43_CH2738 NONE
 CT43_CH2737 NONE
 CT43_CH2736 2777027 .. 2777039 -  -2.7  -2.87146   AATAAAATAAACTTA                TCAAT TGA ATCGA                TTTTCCCACTCATAT  42 13
 CT43_CH2735 2776420 .. 2776451 - -17.6  -4.99056   CAATATAAGTAAAAA      GATGAGGTTTTCTA CATG TAGAAAACCTCATC       TTTTTATATTTACAT 100 35
 CT43_CH2733 2774637 .. 2774648 -    -3  -3.40073   ACTTCCACCAACTAA                CTTA TCGT TAAG                 TTTGTAAATCCTAAC  48 10
 CT43_CH2732 2774233 .. 2774264 -  -7.4  -5.38958   ATTTACAAACAAAAA      CCCATCACTGTA TTCGTATG TATAGTGATGGG       ACTTCTTATATTTTT 100 47
 CT43_CH2730 2771903 .. 2771930 -  -2.2  -4.54253   AAATTACGAAACAAA        TG-ATAACCAATT AAG AATTAGCTATTCA        ATGTTAAACGAGAAA  61 225
 CT43_CH2728 2769350 .. 2769384 - -14.5  -3.24924   GTTCTATTTATAACA     TAACGAACACTGTTC GTAAA GTACAGTGTTCGTTA     TTCTCTAAGAAAATT 100 144
 CT43_CH2727 NONE
 CT43_CH2726 2767372 .. 2767398 -  -7.4  -5.38249   ATTAATTATAAAAAA         CACACTATATTT TAA AGACATAGTGTG         TTTTTTATTTTATAT 100 77
 CT43_CH2724 2765006 .. 2765020 -  -3.6  -3.74345   ACCTACATACTTAAA               TTCCTA CGC TAGAAA               TATTATCTTCGAATC  52 69
 CT43_CH2723 2764274 .. 2764303 - -10.2  -5.42862   ACACTTTCAAAAAAA       TAACCCCGCTCTT CATTT AAGA-CGGGGTTA       CACTTATACAGAAAA 100 176
 CT43_CH2722 NONE
 CT43_CH2721 2761904 .. 2761930 - -10.3  -5.21506   ATAACAACATAAAAA        CCCACTCTTTAC TATT GTAA-GAGTGGG         TTTAATGCTATTAAA 100 70
 CT43_CH2720 2759856 .. 2759885 -  -8.7  -5.47821   AGCTACGTAAAAAAA       CAGCTAATATCCT TAAA ATGATACTAGCTG        TTTTTCATAATGTAT 100 71
 CT43_CH2719 2756497 .. 2756532 - -17.9  -4.23758   ATTTCATATTCAAAA    TAGAGAAAAGACACC TTGAAT GGTGTCTTTTCTCTA     TTTTAATTCCATATA 100 381
 CT43_CH2718 NONE
 CT43_CH2717 2747978 .. 2747995 -  -8.4  -4.66609   TATTCTATTTAAAAA             GGCGAG TTCTTG CTCGCC              TTTTCATTTTTTATA  85 36
 CT43_CH2716 2746440 .. 2746472 - -11.6  -3.42663   ATTATCATTTAAATA     TAATAGCCGATTCTC ATTT GA-AATCGGCTATTA      ATATGTAAAATCCGC  90 49
 CT43_CH2713 NONE
 CT43_CH2712 2740921 .. 2740946 - -10.6  -5.24416   CAATTATAATAAAAA         GAACTTGTAG GATATT CTACAAGTTC          TTTTTCAAATATTAT 100 185
 CT43_CH2708 2737670 .. 2737680 -    -4   -5.4833   GTATTCAATAAAAAA                 TATG GAA CATA                 GTGTGCAATTTTGCA  81 156
 CT43_CH2705 2734381 .. 2734391 -    -4  -4.51777   ACAGTATAAGTAAAA                 TTGT TTT ACAA                 AACTTTGTATTAATC  62 157
 CT43_CH2704 NONE
 CT43_CH2703 2733247 .. 2733267 -  -2.6  -2.78813   GGGCACTGTAACAAT            GTACATTT CATTT AACTGTAC            CGGTACAAAAATTAC  40 120
 CT43_CH2700 2731320 .. 2731345 -  -3.4   -4.0777   ATATAAATATAAGAA         CATTCCTT AGTATAATGG AAGGAATG          CTTTTTTCAATGCAC  56 83
 CT43_CH2699 2729987 .. 2730045 - -15.6  -3.44334   TTAAAGCAATATGAA TAAAGAGCCGACATCACAATTCTACATT ATT AATGCAGGTTTATAATGTCGGCCCTCTA TTTTTAAATAATTTT 100 141
 CT43_CH2698 2729205 .. 2729241 -  -4.5  -4.47328   AATTTTAGCATAAAA    CGAGTCATCTTTCTTCT TAA AATAAAAAGCTAACTCG    TTTTATTTAAACTGT  65 288
 CT43_CH2697 2728313 .. 2728333 -  -8.4  -5.38958   ATGTATAAATAAAAA            GATTAGGA TTCAC TCCTAATC            TTTTTATATTTTGAG 100 157
 CT43_CH2694 NONE
 CT43_CH2693 NONE
 CT43_CH2692 NONE
 CT43_CH2691 2724318 .. 2724343 -  -7.6  -5.67283   AATCTAAATAAAAAA         CAATCCTGGC ATATTA GCTAGGATTG          TTTTTTTATTAATGT 100 44
 CT43_CH2689 2723124 .. 2723153 -  -2.2  -4.16307   CCCTTAATAAAAAGA       GATCCTGCCT TGTATGAATG AAACAGGATC        TTAAACTAATTAACT  54 56
 CT43_CH2688 NONE
 CT43_CH2687 NONE
 CT43_CH2686 NONE
 CT43_CH2685 2720153 .. 2720179 -   -11  -5.25799   AAAATAACATAAAAA         GGTAAAGCGTAT TTT ATATGCTTTACC         TTTCTTTTTTGTAAT 100 21
 CT43_CH2683 NONE
 CT43_CH2682 2718229 .. 2718252 -  -7.5  -5.84381   TTATGAACAAAAAAA          CGTACAAGT AATGTA ACCTGTACG           TTTTCGCTTTTATTC 100 35
 CT43_CH2681 NONE
 CT43_CH2680 2716220 .. 2716232 -  -4.9  -3.52147   TAACGATAGAACTAA                TATGA TCC TCATA                CGTATAAGACCAAAC  56 194
 CT43_CH2679 2714956 .. 2714976 -  -4.7  -5.80817   TTTAACATAAAAAAA            TCCTCCTCA CCT TCAGGAAGA            TTTTTTGTTTGCTAT  90 58
 CT43_CH2675 2710644 .. 2710672 - -13.3  -5.51046   TAAATACAGAAAAAA        GAGCGAATTCTTT ATA AGAGAATTCGCTC        TTTTTATATTTTAAA 100 42
 CT43_CH2660 2696858 .. 2696874 -  -5.1  -3.49475   TTTAGCTTTATATAA              TCCCG TTCTTTG CGGGA              CAATCCCTATAAGAA  57 481
 CT43_CH2658 2696001 .. 2696018 -  -8.3  -3.87792   AAAGTAAAAATAAGA             GCCGTCC TGTT GGGCGGC              ATTTTATTTTAAATA  77 133
 CT43_CH2654 2691914 .. 2691935 - -14.5  -4.75776   AACGTAACTTAAAAA           GCGCAGGAT GCTG ATCCTGCGC            TTTTTTATCGTAATT 100 30
 CT43_CH2637 2674113 .. 2674143 -  -2.6  -3.79866   GTAGAAATAGAAAGA       GTGGATTCCT TGTGAGAGAGT AGGGATCCAC       TTTTTTCTTGCCACT  51 463
 CT43_CH2634 2671470 .. 2671495 - -16.3  -4.32669   AATTGTAGAAAATAA         GAGCAGTTAGC AAAA GCTAACTGCTC          ATCTCCAAGGGGGAA 100 109
 CT43_CH2631 2669714 .. 2669729 -  -7.6  -4.43392   GTAAAAGGAAAAGAA              CCCTTT ATAT AAAGGG               TTTTTCTGGTGATTT  82 47
 CT43_CH2630 2668842 .. 2668877 -  -9.1  -5.67063   TTTATTATAAAAAAA    TAGGTGACTCAACAA TTGTGC TAGCCGAGTCACCTA     GTACTATCGAACCAA 100 143
 CT43_CH2628 2667587 .. 2667602 -    -4  -3.93695   GTTAGGATGTATAAA              CCTTGT TCAT ACAAGA               TTTATTTAGCTTTTT  56 61
       kinB2 2666214 .. 2666251 - -17.4  -3.66999   ACTTATGTATCGAAA   CAAATAAAAAAGGAGC GACTAT GCTCCTTTTTTATTTG    TTTTAATGCGTATTC 100 28
 CT43_CH2622 2661731 .. 2661754 -  -8.2  -3.52906   CATAACTTTATACAA          GCATAGAGGT TCTC ACCTTTATGC           TTGTAGATTCTTATC  73 36
 CT43_CH2614 2651173 .. 2651224 -  -3.8  -3.58522   AATGGATGACAAAGA GTATCATACCTCCGAATTTTGTTA ATGA TAATAGAACAAGGAGGTGTGATAC TATGGCACAAGACGT  53 285
 CT43_CH2603 NONE
 CT43_CH2602 2639678 .. 2639698 -  -9.7  -4.78753   GTAATACGAAGAAAA            GACCGCC TATTACG GGCGGTC            GATTTTTACTAATGA 100 34
 CT43_CH2601 2638403 .. 2638415 -  -6.3  -2.85354   GATGGGAAGTTAAAT                GTGAA CGG TTCAC                TACAATTTAAGGTGC  55 185
 CT43_CH2597 2635484 .. 2635498 -  -3.6  -4.07306   ACAGGTAACGAGAAA               GACATT ATC AATATC               AACAAACAGCTAGAT  58 228
 CT43_CH2572 2613443 .. 2613468 - -11.9  -4.24413   CTGATGAAGAAATAA         GAGCAGCTAGC AAAA GCTAACTGCCC          GCGTAAGGAAATCGG 100 113
      divIC2 2612697 .. 2612736 -  -7.4   -4.8543   GAATTTTGATAAAAA  GCGATGATCATTAAATCAC TTC ATGA-TTAATGACAATCGC  TTATGTATTGATAAG  86 41
 CT43_CH2569 2610938 .. 2610956 - -11.8  -5.65678   ATAAAATAGAAAAAA             GGCACTAT AAA ATAGTGCC             CACATTCAATTTGCA 100 124
 CT43_CH2568 2609568 .. 2609583 -  -3.2  -4.29106   TGTTACAGCAATAAA              TCCACC AATG AGCGGA               TTTGGTGAGCAAGTC  59 493
 CT43_CH2563 2607337 .. 2607350 -  -5.3  -5.44638   AGAACAAAAATAAAA               TGAAC TTTC GTTCA                AAGCAACTAAAAAAC  84 109
 CT43_CH2561 2606802 .. 2606833 -   -11  -5.14477   GAGAGATGGAAAAAA      TAACTCTCCGTAGC GCCC ACTATGGAGAGTTA       TGATCAATAAATTTC 100 29
 CT43_CH2552 2602729 .. 2602761 - -19.5  -2.86349   ATTAATATAATATTA      GAAATGACACTATCA AAT TGATAGTGTCATTTC      TGCTTTATAGGGAAT 100 239
 CT43_CH2547 2598131 .. 2598145 -  -7.2  -4.36914   CTTTTTTTGATAAAA               TGCAAA CAT TTTGCA               AACATAGGTTATCCA  79 34
 CT43_CH2542 2594769 .. 2594785 -  -2.3  -2.92858   GTAATGAGATGAAAT              TTTACCT TGA ACGTAAA              GCTTGGAGGTATGAA  41 10
 CT43_CH2536 2588042 .. 2588080 - -10.4  -5.16472   AAAAATCTTAAAAAA   GAGTTCGAGGTTGATAGA AAG TTTATCAGCTTCGAACTC   TTTTTAGTTTATAGA 100 59
 CT43_CH2529 2579543 .. 2579565 - -12.8   -5.4505   TTTTGTAAGAAAAAA           GCTACCCCTT TGA AAGAGGTAGC           TGTATGTATCCATCC 100 148
       cwlJ1 2576016 .. 2576053 -  -8.5  -4.30885   AAAACACAGTTAAAA   GCAACGTAAGTACCAAA ATTT CTAAGTACTTGCGTTGC    AAATTTTACTATCGT  87 34
 CT43_CH2522 NONE
 CT43_CH2521 2572061 .. 2572076 -  -3.4  -4.54297   CTAATAACAAAATAA              TTTTAT GAAA ATAAAA               GGTAAGGGTGTTCCT  61 78
 CT43_CH2514 NONE
 CT43_CH2513 2564983 .. 2565015 - -13.7  -3.21498   AAAGTAAGGAACACA      GTATTTCAAATGCAC AAG GTGAATTTGAAATAC      TAGATGGGGTTTGTG 100 265
 CT43_CH2509 2560831 .. 2560869 - -17.7  -4.90302   GATTAATAAAATAAA   GAAGAAAGCTACACCCA AAATA TAGGTGCAGCTTTCTTC   TTATAATTGCTCAAG 100 26
 CT43_CH2507 2558436 .. 2558478 - -13.1  -4.33621   CAGCTAATTAATAAA TGCTGTTGTTTAACCA-AAG TTTC CTTGCAGTTAAACAACAGCA TTCTTAAATATTGAT 100 29
 CT43_CH2499 2551716 .. 2551760 - -13.3  -2.75712   TTATCCAGTTAATGA TGATAAAGAAAAAAGGCAT TAATTAT ATGCCTTTTTTCTTTATAA ACTTATCCATAAATA 100 244
 CT43_CH2491 2539409 .. 2539448 - -11.8  -4.63586   ATATTACATATAAAA  CACGTTACTATTCT-TTTA TTT TAATGAGAATAGTAACGTG  TTTTTTGATTTGAAA 100 135
 CT43_CH2484 NONE
 CT43_CH2483 2530700 .. 2530730 - -15.8  -5.23765   GAAATAATAGAAAAA       GTTCAATTTCTTAT ATG ATAAGAAATTGAAC       TTTTTATTTGTAATA 100 41
 CT43_CH2482 2529504 .. 2529530 -  -6.6  -4.96646   TGATAGAATTAAAAA         CCGACTTGCA TCTTAAG CGCAAGTCGA         TTTTATATATATAAG  85 49
 CT43_CH2480 2527301 .. 2527332 -   -11  -4.34947   AATATATGAGGAAAA      TAAAAAAAGAGGGC TAAT GCCCTCTTTTTCTT       TTAATTTGGTAATTA 100 38
 CT43_CH2479 2525931 .. 2525944 -  -2.3  -3.71848   GTTTCTGAGGAATAA               GAGGG TGAG CCCTA                ATTAAACGAAACTGA  47 108
 CT43_CH2474 2521772 .. 2521795 - -11.8   -4.2408   TTATAAAATTAGAAA          GGAGCTCTAT ATAA ACAGAGCTCC           TTTTTTATGTTTATA 100 314
 CT43_CH2465 2511964 .. 2511989 - -13.5  -4.86621   ACTTTTAAGTAAAAA         TAAATCGCCTT TAAA AAGGCGATTTA          TTTTCATTATATATT 100 80
 CT43_CH2456 2501456 .. 2501485 - -15.9  -4.09685   TTCTATTTGGTAAAA       GAGGAAGGTTCAC TTTA ATGAACCTTCCTC        TTTGTTTTTATTCTC 100 5
 CT43_CH2451 2494699 .. 2494727 - -11.3  -3.40307   TTTACGGAATAAAAG        TTAGTCTAACTTA TTA TAAGTTAAACTAA        TTTAAATGAAAGACC  90 143
 CT43_CH2446 2488827 .. 2488845 -  -8.1  -5.24796   GTTAGATAACAAAAA             CGCACCG TAACC CAGTGCG             TTTCAGACAAATATA  93 51
 CT43_CH2445 2488216 .. 2488232 -  -7.3  -3.96696   AACATTAAGAGCAAA              GCATCTA GTT CAGATGC              TTTTTTATTTTGTAG  74 439
 CT43_CH2442 2486629 .. 2486647 -  -8.9  -5.06735   TATAAAGTAGAAAAA             GGAGAGA TTATT TCTCTCC             TTTTTTGTTTTGTAT  95 63
 CT43_CH2440 2485138 .. 2485148 -    -4    -5.626   TATTGGATAAAAAAA                 TACA CTA TGTA                 ATATGTACGTAGGCT  81 513
 CT43_CH2431 2471529 .. 2471557 - -11.1  -3.61398   GGTGTGGGCTAATAA        TCAGTGGGGAT GAACAAA ACCCCCACTGA        TTAAAGTTTCACTTT  89 186
 CT43_CH2419 2456473 .. 2456485 -    -2  -3.29144   CTATTTCTTTCACAA                TACA CCACC TGTA                ATCTATGTTAGTAGA  44 108
 CT43_CH2418 2455257 .. 2455293 - -15.5  -4.14739   TTATGTACTTTAAAA    CCAAAACTTTCTCAA TTTAATG TTGAGAAAGTTTTGG    TTTTTATTATTCTAG 100 60
 CT43_CH2403 2415325 .. 2415354 - -10.9  -2.64616   TGTTTATCCATAGGA       TAGGTAAAGATGC GATG GCATTTTTACCTA        TTTTATTATATTTTT  82 452
 CT43_CH2397 2409451 .. 2409501 - -13.8  -4.63007   TATAAGTATATAAAA GAGGGTAATTTAAAAGAGAATGC GTAAAA GCATTCTCTTTTAAATTA-CTTC TTTATGATTTGTTTA 100 38
 CT43_CH2391 2404725 .. 2404752 - -12.9  -3.64488   AATGCTCTTAAAATA        GAAAAGGATGG TGCTTT CCATCCTTTTC         CTTATGTATTTTGAG 100 105
 CT43_CH2383 2398362 .. 2398387 -  -9.7  -5.27476   CGGAACAAAATAAAA         GAGCGGCTAGC AAAA GCTAACTGCTC          AATACAAGGAGATAC 100 101
 CT43_CH2379 2393691 .. 2393734 - -12.6  -4.55997   AGATATAAGAACAAA TAATAGGGTGACAGAACTTA GGAA TAAGTGCTGACACCCTATTT GTTTACAGTTTGAGG 100 114
 CT43_CH2368 2382234 .. 2382269 -   -12  -5.44198   AATAAATAACAAAAA    GCGCCTTAAAAGCTAAG TAT CACAGCTTT-AAGGCGC    TTTTTTTATGAGGTT 100 41
 CT43_CH2364 2378859 .. 2378880 -  -7.3  -5.69068   TAAAAATATAAAAAA           GCGCATTTC TTTA GAAATGCGT            TTTTTTATTATTTTT 100 33
 CT43_CH2360 2375382 .. 2375405 -  -6.7   -5.9218   CATACAATAAAAAAA          TCTCCTCGG TATTTT CCTAGGAGA           TAAATGATGATTCTT 100 56
 CT43_CH2358 2372714 .. 2372743 -  -5.1  -5.30155   TTATTAATTAAAAAA       GACAGATTCTT AATGAAAA AGGAATCTGTC        TTTTTTGTTCTGAAT  79 55
 CT43_CH2355 2369245 .. 2369269 -  -5.8  -3.16154   TAATATGATATGGAA          GGAAACCT ATTGTTAGA AGGTTTCC          TCTTAAAAGTTTTAA  57 134
 CT43_CH2354 2367905 .. 2367921 -  -4.5  -2.55803   AAAAGTATTATGAAG              CTTGTAA GAA TTACAAA              ACTACCCCAAAAGAA  48 520
 CT43_CH2353 NONE
 CT43_CH2352 2365655 .. 2365689 -   -10  -3.17075   TGTGCGTTAATTTAA     CGAAAAGGGCCCCTTA TTA TAGGCGGCCTTTTTCG     TGCTGTATGTAACAT  81 44
 CT43_CH2344 2360015 .. 2360038 -  -7.6  -4.62904   AAAGATTTGGAAAAA          GGGTTACA-AT CGA ATCTGTAACCC          TTTTTTTCTATTAAA  82 134
      divIC2 2355697 .. 2355717 - -12.7  -5.95539   TGTTAAATAAAAAAA            CATGCACAA AAA TTGTGCATG            TTTAGTAAAAGCTAT 100 118
 CT43_CH2337 2354643 .. 2354678 -  -9.9  -4.62471   TGTAATTCGTAAAAA    GGCGTTTTACTAG ATTAGGGACA CTAGCAAAACGCC     TTGTGGGTAGTACAT  93 224
 CT43_CH2333 2352797 .. 2352825 - -10.4  -6.11243   ATTTAATAAAAAAAA        TGAGGTTTCTCT AGAAA AGAGAAGCCTCA        TTTTTTTATTTGTAA 100 72
 CT43_CH2327 2345441 .. 2345488 -  -3.6  -4.07687   ACTTTGTTTTGAAAA GAGATTATTCTACTAAATTGTT GTGA AACGGTTTCATAGGATAATCTC TTTTGTTTAGTTTTG  56 32
 CT43_CH2324 2343177 .. 2343202 - -11.2  -5.08169   ATATAGTTTAAAAAA         CTGGGGAATC GTTAAT GACTCCCCAG          TTTTTATTTCATAAT 100 64
 CT43_CH2322 2341072 .. 2341098 -   -11  -3.18134   CTAATTAATGTAAGA         GAGTAATTGCTT ATT AGGCAATTACTC         TTTTTATATGTACTT  85 50
       cspA2 2337997 .. 2338022 -    -7  -4.84527   GTTATATATTAAAAA         GGTTGTTAACC TTGCT GGT-AACAACC         TTTTTATTGTTTGAA  83 41
 CT43_CH2317 2337714 .. 2337765 - -20.9  -4.21811   TATTGAAGACATAAA TTTATAATAAAAAAAAACCTCTT AATTAA AAGAGGTTTTTTTTTATTATAAA TTAACCTAATTTAGG 100 26
 CT43_CH2315 2336274 .. 2336301 - -12.9  -5.50774   TAGAATAAATAAAAA        CTGTTCCTTCA GCAAAA TGAAGGAACAG         TTTTTATTTATTTTA 100 33
 CT43_CH2310 2331749 .. 2331770 - -13.1  -4.29928   AATGAATAGTTAAAA           GCATGACAG TATA CTGTCATGC            TTTTTTATTAGAACT 100 20
 CT43_CH2305 2328169 .. 2328189 -    -9   -5.1287   TGCATAGTGAAAAAA            GCCAAGGA TATTT CCCTTGGC            TTTTTTCAATGTAGT  95 44
 CT43_CH2303 2325126 .. 2325171 - -19.5  -4.64048   TAGTATATAAATAAA TTATAAAAGAGCATGTTTGAA AAAA TTCAAACATGCTCTTTTATTA AAGCAAATCAGTTTA 100 38
 CT43_CH2300 NONE
 CT43_CH2299 2321912 .. 2321941 - -12.2  -3.63515   GGTGAGGGCTAATAA       TCAGTGGGGGAT GAGCAA AGCCCCCACTGA        TTAAAGTTTCACTTC  95 123
 CT43_CH2293 NONE
 CT43_CH2292 2317429 .. 2317454 -  -9.2  -4.89393   TAAATTGCACAAAAA         GAGTATTGAA ATTTAA TTCAATACTC          TTTTCAATAGTTAAA  93 125
 CT43_CH2290 NONE
 CT43_CH2289 2313753 .. 2313783 -   -12  -4.69048   ACAAAAGTAAAGAAA       GATAGCTGAAGACA AAT CGTTTTCAGCTATC       TTTTTTCGCTTAAAG 100 35
 CT43_CH2279 2301571 .. 2301592 -  -5.2   -5.8096   TAGAAAAAATAAAAA           CCACTTCA AGTAAA TGAAATGG            TCTCTGGAGAAACAA  91 408
 CT43_CH2278 2300132 .. 2300159 -  -5.7  -5.15634   GAGGGGATGAAAAAA        GGAATG-CCCAT CATGT ATGAGTCATTCC        TTTTTTCATAGATTA  83 38
 CT43_CH2277 2298404 .. 2298415 -    -3  -5.38249   ATGAATTAGAAAAAA                TGTT TGAA AACA                 TGGCAAATCAATATA  74 356
        hup2 2296835 .. 2296870 - -18.6  -4.87133   ATTGCTTAAATAAAA    CCAAGAAACCAGCCTAT AAA AT-GGCTGGTTTCTTGG    TTATTTAACAGCTTC 100 26
 CT43_CH2262 2279649 .. 2279674 - -17.7  -4.53303   TATTTTTATATAAAA         TAGCCCCTGCT GTTG AGCAGGGGCTA          TTTTGTGTTGTTTTA 100 38
 CT43_CH2260 2278765 .. 2278801 -  -9.6  -3.81089   CATATATATGAATAA    TAAAACGTCGTCTC TTCATATTG GAGGCGACGTTTTA    TTTTATAAAATATCT  83 39
 CT43_CH2255 2272232 .. 2272268 - -14.8  -5.68438   TTATTAAATAAAAAA   GGCTATATAGTAGCTGT AATT ACA-CTACTATATAGCC    TCGATTTTATCCCGC 100 138
 CT43_CH2254 2271451 .. 2271490 - -25.4  -3.78312   AAATCAGCTATTAAA  TGAAAACCACCACCACTA TTAA TAGTGGTGGTGGTTTTCA   TCTTGTTAATTATTT 100 31
 CT43_CH2244 2257613 .. 2257627 -  -7.1  -4.64861   TGTTTTTAAAAGAAA               GGAGG ATTAA CCTCC               TTTTTTTAGTGGGTG  80 47
      gerPF2 2254263 .. 2254285 - -13.5  -5.31072   ATAATACAAGAAAAA           GCAGCTAGC TTCGT GCTAGCTGC           TGAGCCCCAGGGAAA 100 144
 CT43_CH2229 2245203 .. 2245223 -  -4.1   -2.9155   CCTTTCAATATCACA            CGAATTT ATATGCA AAATTCG            TATTTGCAAACATGT  47 51
 CT43_CH2228 2244823 .. 2244860 - -15.1  -3.46345   AAGTATGAAAATAGA   TGAAAGCCCTCTGAAAA ATAT TTTCCAGAGGGCTTTTA    TTTTAGTATGCTTCT 100 28
 CT43_CH2227 2243625 .. 2243646 -  -7.4  -5.61596   ACGTTCATAAAAAAA           GAACCTAT GTCATA ATAGGTTC            TTTTTTCATTGGCTC 100 8
 CT43_CH2221 2240385 .. 2240397 -  -3.5   -3.2115   TAAAGCAGGTATGAA                TAAAT TAG ATTTA                GGTAAGTTAAAGTCA  47 219
 CT43_CH2210 2229375 .. 2229404 - -15.2  -4.87389   CATTTCAAAAATAAA       CAGTCTACACCA AATGAA TGGTGTAGACTG        TTTTAATTTGTAAGT 100 28
 CT43_CH2208 2227539 .. 2227569 -  -8.4  -5.00884   ATTTGCGCTAAAAAA       CGAGTAGGGAAT GTTTACG ATTCCATACTCG       TTTTTTTACGCTTTT  91 67
        racA 2223668 .. 2223692 - -14.5  -5.14563   CTCTTCATTAAAAAA          GACCCTTATTA TTT TAATAAGGGTC          TAAAAATTATAATCC 100 32
 CT43_CH2192 2208524 .. 2208549 - -10.5  -4.08216   GGATGTTTTTGAAAA         GAAACTTGTGC ATAA GCGCAAGTTTC          TTTTTTATAGTTTAA  91 53
 CT43_CH2186 NONE
 CT43_CH2185 2199935 .. 2199969 - -14.5  -3.50045   AGTTAGACAGCATAA     GAAGATGATCCCTGT ATTTA ATAGGGATCATCTTC     TTTATTTTCTACTAA 100 78
 CT43_CH2178 2192961 .. 2192980 -  -6.4  -5.01042   AAGTGAAATGAAAAA            GAGGCCTT TAAA AAGGTCTC             TTTTTTGCGTTTAAA  82 36
 CT43_CH2168 2183596 .. 2183616 - -14.1   -4.7373   TTAGTGGATTAAAAA            TAAGGGTGC TAT GCACCCTTA            TTTTTTTTGCATTAG 100 37
 CT43_CH2166 2181370 .. 2181397 -  -6.5   -5.5353   CAGAGTAATAAAAAA        GCTACTTAGAAA ATATA TTTC-AAGTAGC        TTTTTTTATGTAAAT  93 323
 CT43_CH2161 2177898 .. 2177955 - -16.9  -2.86449   ATCGCATCACAATTA CATAAGTAATAAAAAAGGTTTCAGCTTA TAG TAAGCTGAAACCTTTTTTATTA-TGCTG TAGGTAAGACATAAA 100 18
 CT43_CH2155 2170894 .. 2170916 -   -12  -4.83032   ATATGAAATAGAAAA           GGTAGGTGTG ATT CGCACCTACC           TTTATTTTTTACCAT 100 49
 CT43_CH2148 NONE
 CT43_CH2147 2164725 .. 2164760 - -12.8  -3.30821   AATAATAGAAGTCAA    TAAAGAAGGGATAGCC ACTA AGCTATTCCTTCTTTA     CGTTAATTGCTGTTA 100 198
 CT43_CH2138 NONE
 CT43_CH2137 2156710 .. 2156736 -  -3.6  -4.84642   TTGAAATGAAGAAAA         GGGTGCTTCT ATAAATG AGGGGCACCC         TTTCTATATTTCTGG  66 29
 CT43_CH2115 2130052 .. 2130087 - -12.9  -3.41961   ATTAGTACGAATTAA    TATAAAAAGTCGTGGC ATTAA GCCACGACTTTTTA-A    TTTGCTTACGAACTG 100 94
 CT43_CH2113 NONE
 CT43_CH2112 2126493 .. 2126517 - -15.9  -5.72053   TAATTAAAGAAAAAA          GGAAGTTGGAA TGA TTCCAACTTCC          TTTTTCGTATGGAGG 100 45
 CT43_CH2103 2111672 .. 2111701 - -10.1   -5.8901   ATAGAAAATAAAAAA       GGGGA-TCCTTTCT GAG AGTAAGGAATCCCC       CTTTTTATTGTTTCT 100 51
 CT43_CH2095 2106377 .. 2106413 - -22.5  -5.50774   TATAACAAATAAAAA    GCGTCGCAAATGCTTGT ATA ACAGGCATTTGCGACGC    TTTTATAGTTTTTCT 100 60
 CT43_CH2094 NONE
 CT43_CH2093 2104314 .. 2104346 - -11.6  -3.25595   GCAAAATGAAAATTA     TAAAAGCAGAACTCT CATA AG-GTTCTGCTTTTA      TTTGTTGTAATTAAT  88 158
 CT43_CH2091 2102642 .. 2102675 -  -8.3  -4.76193   AAGCATAATATAAAA     GTGCAGAAATCTT GAGTTAGA AAGAATTCTGCAC      TTTTTTTGCGTGATG  90 120
 CT43_CH2089 2099567 .. 2099598 - -16.2  -4.98103   TAACAAAATATAAAA      TAAAGCAGATTCTA AATA TAGAATCTGCTTTA       TTATGAAATACTTGT 100 47
 CT43_CH2086 2097955 .. 2097973 -  -7.5   -5.4505   TGCGTTAATAAAAAA             GAAGCTT AGTAG AAGCTTC             TTTTTTATTGCTATT 100 195
        scdA 2097036 .. 2097065 - -14.5  -5.40004   TACCAAATGAAAAAA       CAGGACATAAGTA TGTA TACTCATGTCCTG        CACTTGATTTATACT 100 34
        nirB NONE
        nirD 2094098 .. 2094117 -  -9.3  -4.18494   TATTTTTATTTAAAA            GGAAGCC AGGGGA GGCTTCC             TTTTGTAAATTACAT  88 35
 CT43_CH2082 NONE
 CT43_CH2081 NONE
 CT43_CH2080 2091411 .. 2091438 -  -4.2  -5.05577   AAACTAAAGCAAAAA        GAACAAAGGCCT CTAA AAACGTTTGTTC         AAAGTTAATTACTAT  70 58
 CT43_CH2071 2082525 .. 2082551 - -12.5  -5.22039   TTTAAATTGAAAAAA         GATTAGCATCT AAATA AGATGCTAATC         AATGCTACAAACAGA 100 20
 CT43_CH2066 NONE
 CT43_CH2065 NONE
 CT43_CH2064 2071039 .. 2071070 - -16.1  -5.15634   CACTTTATTAAAAAA      CGTCTCAAAGAAC AATGTA GTTCTTTGAGACG       TTTTCTTTAAACTCA 100 52
 CT43_CH2062 2070056 .. 2070082 -   -16  -5.63645   CTAAAATAGAAAAAA         GGCAGAAAACGA AGC TCGTCTTCTGCC         TTTTTGTAATATTAT 100 40
 CT43_CH2061 2068985 .. 2069021 - -13.3  -5.51402   ATATATTCAAAAAAA    GAAGAGATATACAATAA CTA CTGTTGTATATCTCTTC    TTTTACTGTTAGTTA 100 34
 CT43_CH2060 2068461 .. 2068482 -  -7.3  -5.35354   GAGATAAGTAAAAAA           GCTCAAAGC TTTA GTTTTGAGC            TTTCTTTATTAAAAG 100 53
 CT43_CH2057 NONE
 CT43_CH2056 2065309 .. 2065333 - -14.4  -4.13945   ATTGCTATGTGAAAA          TCCCCCTCAA ATATA TTGAGGGGGA          TTAAATCTTTGAAGT 100 26
 CT43_CH2049 2058879 .. 2058901 -   -15   -4.2704   TGCATCATGAATAAA           CACACCAAGT ATA ACTTGGTGTG           TTTTTTTAAAACGCT 100 31
 CT43_CH2044 2055894 .. 2055924 - -11.2  -3.12874   ATAGATATTAGTTAA       GAAGAGGCTACTTA TAA TAGGCAGCCTCTCC       TGCGTGTATTATGCA  84 44
 CT43_CH2032 2050622 .. 2050642 -  -6.9  -3.59979   TTGCTTGAGCTGAAA            TAGGAGG GATGTAA CCTCCTA            TTTTTTATTGCCTAT  67 61
 CT43_CH2029 2047297 .. 2047332 - -14.3  -3.61089   GGTGAATAACTAGAA    GAAGGCTG-TCCAAAA AGTTA TTTTGGAACAGCCTTC    TTTTTTATTTTGTTG 100 73
 CT43_CH2026 NONE
 CT43_CH2025 NONE
 CT43_CH2024 2042137 .. 2042155 -  -7.5   -5.5353   TATATTAAGAAAAAA             CTGAATC ATTTA GATTCAG             TTTTTTTATTTTTGG 100 31
 CT43_CH2022 NONE
 CT43_CH2014 2032721 .. 2032751 - -11.3   -4.4768   CATGAATAGAATAAA       TAAAAAGGACAGG GAATG CCTGTCCTTTTTG       TTTTAGTGATTAAAG 100 35
 CT43_CH2008 NONE
 CT43_CH2001 2021268 .. 2021306 -  -4.7  -4.52589   GTCCGCTATACAAAA   GGAATAACCCCCTAC TTTTAGATT ATAGAGGGTTATTTC   AATTAAGGTTTTGGA  67 28
 CT43_CH2000 NONE
 CT43_CH1999 2019290 .. 2019309 - -13.6  -5.21709   TTGCATATTAAAAAA            CCATCCCG AAGT CGGGATGG             TTAAAATATGATATA 100 26
 CT43_CH1986 2007462 .. 2007476 -  -9.2  -5.25805   AATAAATGTAAAAAA               GGCCGC AAA ACGGCC               TTTTTTGGGTGGTAT  95 46
 CT43_CH1979 2001365 .. 2001419 - -16.4  -3.66643   CAAATGAAATTACAA CGATA-GAATAAATAAAACCGAGAAG AATGA CTTCTCGGTTTTATTTATTCGTAT-G AATTTTTCCTGGTGC 100 11
 CT43_CH1976 1999193 .. 1999219 - -15.3   -5.1634   ATAAATACATAAAAA         GGCAGCTGAAT ACTAG ATTCAGCTGCC         TAGAAAATATAATGG 100 42
 CT43_CH1975 1998619 .. 1998634 -    -9  -5.20333   CATGTATAATAAAAA              GCCTGT TTTC ACAGGC               TTGTATTTTCGTCTA  95 18
 CT43_CH1973 1996462 .. 1996487 -   -12  -4.87037   AATACATATGAAAAA         GAAGAGCTGT AAGAAA ACAGCTCTTC          TTTTTATGCATTATG 100 36
 CT43_CH1970 NONE
 CT43_CH1969 1992830 .. 1992855 - -14.9  -5.16071   AAGTAGTAAGAAAAA         GAGATGCATCA TATG TGATGCATCTC          TTTTTAGAGTTATAA 100 35
 CT43_CH1965 1989329 .. 1989368 - -13.9  -2.72661   GATGATTGTGAATGA  GCATAAAAAAGCATCCA ATAACA TGGATGCTTTTTTATGT   TTTTTGAAGTTGTTT 100 20
 CT43_CH1959 NONE
 CT43_CH1958 1983320 .. 1983352 - -20.9  -5.06816   ATGTTGTAATAAAAA      GCACTGTTTTAGCTA ATG TAGCTAAAACAGTGC      TTTTCTCTTTGATTG 100 14
 CT43_CH1955 1980428 .. 1980486 - -18.1   -4.3014   ATAGATTTATTAAAA GAATAGCCATATTAAAAAACATCTCATA TGAA TATGAGATGTTTTTTAATATGGCT-CTG TCGCATGTAATACAA 100 12
        nadE 1975797 .. 1975818 -  -7.4  -5.47431   TTAACATATAAAAAA           GAAGCTAA ATGAGA TTAGCTTC            TTTTTTATGTTTTAT 100 41
 CT43_CH1946 1972502 .. 1972538 - -14.7  -3.63589   TAAAAGATTTGGAAA    TGGCAAAAAAGCACGTA GTT TACGTGCTTTTTTACAA    TGGTTTTTAAGTTTA 100 41
 CT43_CH1945 1971407 .. 1971459 - -22.7  -2.87647   ATGTACGAGATTATA TAATAATAAATAAGCCTAGTAATAT AAG AAATTACTAGGCTTATTTATTATTA AGTTGTTAAACGTTC 100 67
 CT43_CH1942 1968989 .. 1969021 -    -5  -3.07233   TCATAATTTGTAAGA      GAATTGCATGAT GTTTTGAGT AACATGCAATTC      TCTTTCGTTCATTAA  52 37
 CT43_CH1919 1944517 .. 1944530 -  -3.9  -2.81966   TCAAATTTTATTATA               CAATA TTTG TATTG                AATTTTGGGAAAATA  47 7
 CT43_CH1918 1943837 .. 1943870 -  -4.1  -5.70522   AACAATAATAAAAAA    TAGGACT-CTACGCA ATATTA TGC-TAGGAGTCCTA     TTTTATTTATAAACT  81 32
 CT43_CH1912 1939115 .. 1939144 - -16.7  -5.16071   AATTATGAAGAAAAA       TAGTGTTAGAAGG AGAG CCTTCTAACACTA        TTTTTCTTTAAAAAT 100 23
 CT43_CH1908 1934502 .. 1934527 - -11.9  -4.60797   TTCGTATAGAGAAAA         GGCTTTCCAAG GAAA CTTGGGAAGCC          TTTTTATAATTGTAT 100 62
 CT43_CH1905 1932284 .. 1932310 - -12.4  -4.44461   AATAATTTGATAAAA         GGTGAACAGG AATATAA CCTGTTCACC         TTTTTTATACGTAAT 100 30
 CT43_CH1902 1929221 .. 1929255 - -11.6  -2.74525   CCAAATTATATAGTA     TCATGGCTTTTATTGT AAA ACAATAGAAGCCATGC     ATTCATTTTTTCCAA  86 28
 CT43_CH1901 NONE
 CT43_CH1900 1928399 .. 1928451 - -19.5  -2.75349   AAGGTGCAAAATTTA GGTCAATAACAAAAAGCTCCGTTTG TTA CAAACGGAGCTTTTTGTTATTGGAT ACAATAAACGATTAC 100 17
 CT43_CH1884 1911261 .. 1911288 -  -7.1  -5.58522   TATACAAAATAAAAA        TCCCTCTTTTA TATTCG TTAAAGAGGGA         TTTTTATTTTGAAAA 100 65
         ldh 1902668 .. 1902716 - -15.9  -3.34962   GGTCATAGGGGATAA TTAAGATAAAAAAGCAATCCAA AATAAA TTGGATTGC-TTTTTATCTTAA TTAAAGAACCGGAGC 100 26
 CT43_CH1868 1896289 .. 1896302 -  -5.3  -5.44638   AGAACAAAAATAAAA               TGAAC TTTC GTTCA                AAGCAACTAAAAAAC  84 109
 CT43_CH1859 1890490 .. 1890506 -  -5.1  -5.26875   TTTGTAAGTAAAAAA              GACGC TAATTAT GCGTC              TTTTTCATGTTTGAT  79 17
 CT43_CH1858 NONE
 CT43_CH1857 1889596 .. 1889615 -  -3.6  -4.00066   TTCACAATCGATAAA            TTAGCTTT GTGC AAAGCGAA             TAGATACACAGTTAT  56 37
 CT43_CH1856 1889209 .. 1889236 - -17.8  -3.15861   TAGTAGTTTCATTAA        CAAGAGCCGCCC ATTA GGACGGCTCTTG         TTTTTATTAGTATTT 100 40
 CT43_CH1793 1836912 .. 1836923 -  -4.4  -2.71011   ACGTCTTGGTAACGA                GTAC TACG GTAC                 AGAGAAAAAGGAAGT  47 332
        ansR 1835654 .. 1835689 - -22.2     -3.67   CTAACTGTTAAAAGA    GAAATGCCACTACACT TTCG AGTGTAGTGGCATTTC     GTACGTTATAGAGGT 100 297
 CT43_CH1780 1828669 .. 1828718 - -17.6  -4.58663   AGTACGTCGTAAAAA GTAAGACGTAAGAAAGAGCCTAC AAACA GTAGGCTCTTTCTTACGT-TTAT TTCATTTCAACTTGC 100 22
 CT43_CH1773 1821963 .. 1821979 - -12.3  -5.55769   TTCCATAATAAAAAA              CGTCCCA AAA TGGGACG              TTTTTTATTATGCGT 100 33
 CT43_CH1770 1817279 .. 1817301 - -10.6  -3.48696   CCAGAATAATAGGAA           GCAGTTATCC TTT GGATAGCTGC           TTATTCATTTTTGTT  85 48
 CT43_CH1768 NONE
 CT43_CH1765 1811275 .. 1811315 - -12.2  -2.67425   AAATGAATATAATAT  TACAAAAGATAAGCTC ATTTCACTA GAGCCTATCTTTTGTA  TGTATTACCAATAAA  89 30
 CT43_CH1763 1809501 .. 1809528 - -10.8   -4.3534   TTTTAATTAGTAAAA        TAAATAGACACC TGTG AGTGTCTATTTA         TTTTATGAAAAATTT 100 39
 CT43_CH1761 1808000 .. 1808052 - -11.6  -4.63172   TACTAAATTAGAAAA GACAATAAACAGAGCTGGAATTTCT ATAT AGGAAATCCAGCTCTGTTTAT-GTT TTATTGAAATTCTTT 100 51
 CT43_CH1753 NONE
 CT43_CH1752 1799613 .. 1799634 -  -8.1  -5.71712   CTCTATATAAAAAAA           CACAGTTTA CACT CAAACTGTG            TTTTTTCGACGTACA 100 70
 CT43_CH1749 1797418 .. 1797428 -  -3.2  -4.47271   GAAACTTAACCAAAA                 CGAT GAG ACCG                 GCTTCTTTACAGGAA  62 491
 CT43_CH1745 1792108 .. 1792154 - -11.8  -5.18561   GAAATACGCAAAAAA TATCACAGGGCAGATTCTCAAA ATA TTTCAAAATCCACCCTGTGATC ATATACTCATTTACA 100 52
 CT43_CH1740 1785313 .. 1785340 -  -8.6  -6.04324   TGAAAAAATAAAAAA        GATAGCAATATA TAAG TGTATTGCTATC         TTTTTTATTTTTTGT 100 49
 CT43_CH1738 1782557 .. 1782586 -  -7.9  -5.55769   TCGTATAATAAAAAA       GGGTATTCCAAGT TTTA ATTTGGAGTACCC        TTTTTTTATTATCCA 100 144
 CT43_CH1736 1779757 .. 1779795 - -11.9  -4.32482   ATTTATAATTCAAAA  GAGAAGGCTGTCTCCAAA TAAT CTTGG-GACAGCCTTCTT   TTTTCATTACCCTAC 100 32
 CT43_CH1731 1775461 .. 1775481 - -11.3  -5.61913   AATAAATACAAAAAA            CCTTACTTT TTA AAAGTAAGG            TTTTTTACACATAAA 100 46
 CT43_CH1729 1772860 .. 1772889 -    -3   -5.1361   AGAAACTTTAAAAAA       GA-AAGACTATAG GTCTG CAATAGTCTTATC       TACTAGATGATAGGC  71 2
 CT43_CH1728 1771417 .. 1771429 -  -6.3   -2.6175   TATATTTGAAGCAAG                TCGTT ATA AACGA                GGTTTACAAAGATAA  57 190
 CT43_CH1721 1764510 .. 1764534 -   -13  -5.67529   AATGAAAAAGAAAAA          GGATGAAGCA ACATG TGCTTCATCC          TTTTTCTTTAAAATC 100 33
 CT43_CH1717 1759868 .. 1759919 -  -7.1  -3.81339   GAGTTAGAATGTAAA TAAAAAAGATAGATACAAGC GAGGAAATATAGT GCTTGT-TCTATCTTTTTTA TAGTTAAACTAGGTA  72 309
 CT43_CH1710 1751240 .. 1751254 -  -2.9  -3.41767   AGATTTGAAAATATA               TGTTT TTTAT AAACA               AGATCCTCCGCTCAC  48 17
       msrA1 1750586 .. 1750612 - -13.8  -5.65496   TATCAAAAATAAAAA         CGCATCGTACTC AAA AAGCACGATGCG         TTTTTATTATTTTTT 100 32
 CT43_CH1703 1746074 .. 1746102 - -13.3  -5.01422   TTATATAAAAAGAAA        GGTAGCGTATC ATACATA GATACGCTACC        TTTTTATTTTGCTCT 100 29
 CT43_CH1694 1736180 .. 1736206 -  -9.5  -5.05577   AAATTAAATGAAAAA         GAGGTTCTAGT TACTG ACTAGAGCCTC         TTTTTATACACTTAA 100 37
 CT43_CH1689 1730515 .. 1730545 - -12.1  -4.33417   GGTATCCATAAGAAA       GAATAAGCCCTAA AGAAA TTAGGACTTATTC       TTCATTAAATACAAA 100 20
 CT43_CH1688 1730331 .. 1730350 -  -7.9  -3.21837   ACAGAAGTAAGAAAG            GCTTGGA TGGGTT TCCAAGC             TTTTTTATGTATGGG  69 30
       dapG1 1725220 .. 1725254 -  -2.9  -4.65895   CCTTTCAGTCAAAAA    CACCTTGTCACAGCAT AGGA AAAATG-GACAAGGTG     TTTTTTTATATGTCA  62 130
 CT43_CH1683 1724576 .. 1724599 -   -11  -3.65135   CTCAAACAAGCATAA          CCCCGTTCTA AAGC TAGGACGGGG           TTCAAAATATAATAA  89 104
 CT43_CH1680 1721874 .. 1721903 -    -5  -5.48063   ATTTAATATAAAAAA       GCTATGTCTTCA AATGTA TGAGGGCATAGC        TTTTTTGTTGTAATA  82 88
       pyrH1 1710573 .. 1710593 - -12.6  -3.85704   TGATGAATTAGGAAA            GGGTGCCT ACAAA AGGCACCC            TTTTTGGTGGGGAAT 100 43
 CT43_CH1666 NONE
 CT43_CH1665 NONE
 CT43_CH1664 NONE
 CT43_CH1663 1700877 .. 1700896 - -13.6  -4.95758   ATTATATGAGAAAAA            CCTTCCGC AATT GCGGAAGG             TTTTTTATTTTTCGA 100 30
 CT43_CH1660 1697394 .. 1697426 - -11.5  -5.10461   CTTATTTAATAAAAA      CAGGATAATCCTCAT TTT ATAAGAATCATCCTG      TTTTTATTGATATAT 100 40
 CT43_CH1658 NONE
 CT43_CH1657 1695817 .. 1695845 - -14.8  -2.94365   TTATATTGTAGAAAT        CTAAAAACCCCT TTATT AGGGGTTTTTAG        GTTTCTATAGGTCTG 100 30
 CT43_CH1650 1690820 .. 1690847 -  -9.3  -5.20783   AGTTAAATAGAAAAA        TGTCCCTAAGT TATTAG ACTTAGAGACA         TTTTTTCGTAAGTGC  95 45
 CT43_CH1646 1687339 .. 1687366 -  -4.1  -5.13344   AGAGTAATAGAAAAA        GCCAGGGTTCT GAGTAT AGAATCTTGGC         TTTTTTGATGTTCAT  74 85
 CT43_CH1644 NONE
 CT43_CH1643 1684611 .. 1684637 - -16.8  -5.56263   ATCATAAAATAAAAA         TCACCTTCTACA ACA TGTAGAAGGTGA         TTTTTTTATTTTTTA 100 31
 CT43_CH1637 1678684 .. 1678703 -  -7.9  -5.04601   GCTATAAAGTAAAAA            GGCTTCA TTCTAC TGAAGCC             TTTTATTAATTATTA  89 38
 CT43_CH1635 NONE
 CT43_CH1634 1676536 .. 1676583 -   -13  -2.73275   TAGCTATATAGATTA GTAAAAGGAGAGCTGGTTAC GATTTTGT GTAACCAGCTCTTTTTTTAC TTCGTAGAAATTATT  95 22
 CT43_CH1631 1673937 .. 1673970 -  -9.7  -5.18866   TTTAAAGAAATAAAA     GAGAGACTGCCTAAA ACCA TTTAGGCAGTCTTTT      TTTCGTTAAGAACTA 100 31
       asnO2 1670145 .. 1670183 - -14.8  -3.24032   ATGTGCTAATTAATA   TAAAAGGAGTTCAAGGTT TTT ATCCTTGAACTCCTTTTT   GTTAAGCAATATGGA 100 27
 CT43_CH1626 NONE
 CT43_CH1625 NONE
 CT43_CH1624 1667566 .. 1667587 -  -8.7  -3.54503   TGAATAGATAAGTAA           GGAAGCAGC TTTA GTTGCTTCC            TTTTTTTATTTGTAA  76 14
 CT43_CH1617 1663468 .. 1663500 -  -9.2  -3.74238   TGAAACAACTTTAAA      GAGGCTTGCTGCAT ATAGA ATGTAGTAAGCCTC      TTATCTTTTTTAGTC  80 39
 CT43_CH1616 1661551 .. 1661573 - -11.4    -4.946   AGTAAATAGTAAAAA           GGAATCCATA TGC CATGGATTCC           TTTTTATATATGAGC 100 249
 CT43_CH1610 1654668 .. 1654690 - -13.5   -3.5944   ATTTATAGTTTGAAA           GGCTGTCGT GCATA ACGACAGCC           TTTTAATTTTTTGTT 100 28
 CT43_CH1607 NONE
 CT43_CH1606 1651125 .. 1651148 - -11.1  -5.20333   GATTCATAAGAAAAA          TGCCACTTC AAAAGA GAAGTGGCA           TTTCTTATATTTCCT 100 30
 CT43_CH1605 1648679 .. 1648703 - -12.3   -5.1101   TTAGCATGTAAAAAA          GAAAAGAAGCA GTA CGCTTCTTTTC          TTTTTTTACGCTGTG 100 31
 CT43_CH1604 NONE
 CT43_CH1603 1647197 .. 1647233 -  -9.7  -3.32293   CTAAAGGTAAACATA    GAAGGAAGAAAAG TTGAAAGTTGG CTTTTCTTCCTTC    TTCTATTACATCCCC  78 508
 CT43_CH1584 1631434 .. 1631461 - -13.6   -5.4251   TCTATATAGAAAAAA        TAAACCTCTCCG CAAG CAGAGAGGTTTA         TTCATGAAACTAACT 100 49
 CT43_CH1583 1630356 .. 1630394 - -13.5  -4.39002   AAATTGGGTACAAAA   TAAAAGGGAGATACATA GTTTA TATGTATTTCCCTTTTA   TTTTGTATGGAATCG 100 63
 CT43_CH1560 1610967 .. 1610990 -  -8.2  -2.63858   TATCATATTTACAAT          GGGCACAATA ATGA TATTGTGCCT           CCCCCTTTACATCAT  67 32
        cheR 1610147 .. 1610170 - -12.5  -4.67353   CGAGTTATGTAAAAA          GGTCGTCAC TCCATT GTGACGACC           TCTTTTATATTTTTT 100 30
 CT43_CH1555 1606157 .. 1606203 - -24.3    -3.272   AGCAGGCTATATCAA CAATAATGAAATAAGACACTC TTGTT GAGTGTCTTATTTCATTATTG CTTGCATGCCCCAAC 100 20
 CT43_CH1552 1605301 .. 1605318 -  -9.9   -5.5943   AAAGTATGAAAAAAA             CAGCTCA AATA TGAGCTG              TTTTTCTATAGTTTT 100 68
 CT43_CH1551 NONE
 CT43_CH1550 1603482 .. 1603503 - -10.3  -5.42975   CGACATAAATAAAAA           TAGCATGTT TATA AACATGCTA            TTAAGTAGAAGGAGA 100 26
 CT43_CH1549 1602863 .. 1602881 -  -2.4  -3.77014   ATAAAATCACCTAAA             CGAGAA ATTCCTG TTCCCG             ACAATAATAATAATT  51 70
 CT43_CH1548 1601622 .. 1601636 -  -5.8   -3.1162   ATAAATATTTTAACA               TAAAGT GAA ACTTTA               ATCAGTGGGAGGCTT  57 75
 CT43_CH1547 1600778 .. 1600805 - -12.9  -4.19953   TATTTAATGTGAAAA        TAAAAAGCGGC ATAATA GCCGCTTTTTA         TCGTTTGGTTAGTAT 100 74
 CT43_CH1541 1596592 .. 1596613 - -11.7  -4.74215   ATATGATGAAGAAAA           TCCCCTTAA GCAA TTAAGGGGA            TTTTTTTATTCCTTT 100 31
 CT43_CH1538 1592769 .. 1592800 - -15.4  -5.60556   AAGATAAAACAAAAA      GGAGATTGCTATCT TATA AAATAGCAATCTCC       TTTTATTATAGTAAA 100 42
       cspB1 1585748 .. 1585773 - -13.4  -4.54404   CAAAGGAATAATAAA         GGAGGTTACC AAGTAA GGTAACCTCC          TGTTATATGTTGGAT 100 40
 CT43_CH1528 1585391 .. 1585414 -   -14  -5.60993   GTTGTCATAAAAAAA          CATCCAGAGA AAAT TCTCTGGATG           TTTTTTTAGTGCTTT 100 31
 CT43_CH1524 1582802 .. 1582837 - -12.1  -2.62144   TCCAAATTATAAGAT    TATCCCCTACTTAAA TATTTT TTGAAGTAGGGGATA     GAGTAGTTATCCGAT  87 32
        rnhA NONE
 CT43_CH1522 1581354 .. 1581372 -  -3.2  -4.01939   GAAGCGACAATTAAA             CATCAA TTGCAGT TTGATG             GTAGTTATTTCGTTG  57 123
 CT43_CH1520 1580322 .. 1580344 -  -6.4  -5.60993   TTTTGGATAAAAAAA           GAATCCTT TTAAATG AAGGATTC           TTTTTTTATCCCGCT  93 145
 CT43_CH1518 1564252 .. 1564287 - -17.2  -4.89009   ATAGGTAATGAAAAA    GAGATTGTAATTTGGT TTCA ACCAAACTACAATCTC     TTTTTTGTTTCAATT 100 39
 CT43_CH1502 1549043 .. 1549063 -  -9.8  -4.96848   GGGGCTATATAAAAA            CCTTACGT TTTAT ACGTAAGG            TTTTTTTGTTGCATA 100 53
 CT43_CH1498 1546310 .. 1546322 -  -4.9  -3.41907   TAAAAATGAGAAAAG                CTTTT TTG AAAAG                AATGACAAAGCTTTT  55 311
 CT43_CH1495 1541221 .. 1541245 - -14.4  -5.11033   GAGAAGCGTAAAAAA          GCAAGGTCTC GTTAT GAGACCTTGC          TTTTCTTTTTAAGTG 100 12
 CT43_CH1482 1529220 .. 1529245 - -14.9  -3.78329   GTTGAGCAATGTAAA         TAACAAGAGGG AGAA CCCTCTTGTTA          TTTTTATGCTTCTGT 100 29
 CT43_CH1479 1528212 .. 1528245 - -19.8  -5.60689   TGATATAATAAAAAA     GAAGTCCCGTCTTC CATTTT GAAGACGGGACTTC      TTAATTTGAAACAAT 100 188
        recU 1526483 .. 1526495 -  -2.7  -4.77036   CTCTATCACGAAAAA                TAAAC CGT GTCTA                GTACACGGATATAGT  63 3
 CT43_CH1476 1523666 .. 1523698 - -17.2  -5.59534   AATGATAACAAAAAA      GAAGTCCGCTTCTC GTTAA GAGAAACGGACTTC      TTTTTTGTTTATTAG 100 37
 CT43_CH1465 1513425 .. 1513446 -  -8.8   -4.5287   CGAAATTAAGTAAAA           GAAGTTCC TCTTTT GGAACTTC            TTTTTATTTCAATAT  88 129
 CT43_CH1457 1506691 .. 1506716 - -10.6  -5.45652   ACTTGTAATAAAAAA         CTAGAAAAGC TAAGGC GCTTTTCTAG          TTACATTTAATTATG 100 32
 CT43_CH1427 1481846 .. 1481873 - -12.2   -4.2231   AATGATTATGTAAAA        GACGGTTTCG-TA CAA TATCGAAACCGTC        TTTTTGTATTCATTA 100 38
       ansA1 1476889 .. 1476917 -  -9.6  -5.71295   AGAGAAAAATAAAAA       TGAGCTGTCG-GG AAAA CCTCGACAGCTCC        TTTTTATTCGTGCAT 100 29
         fer 1466312 .. 1466363 - -17.6  -3.69559   TAAGGAAAATAAAAT TTAGATACAAAAAACGCCCCTCAT CAAT ATGAGGGGCGTTTTTTGAAGTTAA TAAAAGACTATTCGA 100 33
 CT43_CH1408 1464402 .. 1464427 - -16.3  -5.11836   ATATTTAAAAGAAAA         CCGTCCCAAAA TTTA TTTTGGGACGG          TTTCTTTTACCAAAA 100 32
 CT43_CH1393 1448456 .. 1448473 -  -8.5  -6.04324   TCAAAAAAGAAAAAA             CAGCTAA GAAT TTAGCTG              TTTTTTCTTTTTCCT 100 19
        deoD 1446625 .. 1446660 - -13.5  -3.34013   GATTGGTTCAACTAA    TAATCAGTGGGGAAT GGGAAA AATCCCCACTGATTA     AAGTTTCACTTTATT 100 155
 CT43_CH1390 1444662 .. 1444672 -    -4  -3.34609   CTAGTGAAATTAAGA                 CAAA TTA TTTG                 ACTTCTTTTACTTTT  49 19
 CT43_CH1389 1443982 .. 1444007 -  -4.8   -5.5762   ATGAAATATAAAAAA         GGTTACCA AATTTTCAAA TGGTAACC          TTTTTTATGTATAAG  85 46
 CT43_CH1388 1443704 .. 1443723 - -10.8  -5.77988   ATAGAGATAAAAAAA            GAACAGCA TTAA TGCTGTTC             TTTTCCGTTGACGAA 100 14
 CT43_CH1386 1441182 .. 1441223 -    -9  -5.47159   GTGCAACATAAAAAA CTACATGCTAATTGTT GGGAGTGTTT AACAATTGGCATGTAG  TTCGTGGATTAGTCC 100 42
 CT43_CH1385 1440626 .. 1440655 - -12.3  -4.07537   AAGAAACGTAAAGAA       GGAGCACTTATCC TCCC AAATAAGTGCTCC        TTTTTATTAAAAGAG 100 120
 CT43_CH1384 1440030 .. 1440053 - -11.1  -5.44721   ATTATGGTAAAAAAA          GAGGCGAAT TTCATT ATTCGCCTC           TTTCTCGTGTGAAAA 100 76
 CT43_CH1382 NONE
 CT43_CH1381 1435982 .. 1436012 - -11.3  -5.24129   CTTGTTCACAAAAAA       GTCGTCTTCCT AGAAAAATA AGGAAGACGAC       TTTTGATTAGAAAAC 100 32
 CT43_CH1380 1434812 .. 1434828 -  -9.5  -5.14563   TTCTTCACTAAAAAA              GATGTCA ATA TGACATC              TTTTTTTATTAAATC 100 298
 CT43_CH1378 1433889 .. 1433909 -  -6.9  -6.08342   GAATAAATAAAAAAA            CGAGGTA TTTATTT TACCTCG            TTTTTTATTTGTTCT 100 13
 CT43_CH1374 1430387 .. 1430420 -  -9.8  -2.96695   TTTCCTAGGAAATGA     TAATAGAGAGGG GAGAAGAACA CCCTCTCTATTA      TTTTGCTTTTGCAGA  75 23
 CT43_CH1372 1428441 .. 1428488 - -20.9  -2.75838   TGCAAAATTAGATTA TGAAAGAAAGGAAGCCTCACA TTATTT TGTGAGGCTTCCTTCCTTACA ACTTCATGGCGCTCC 100 21
       brnQ3 1426271 .. 1426285 -  -2.1  -5.58209   TCAAATGTAAAAAAA              CT-CCC TTTT GGGTAG               TTTTTTTAGGAGGCT  74 31
 CT43_CH1360 1416773 .. 1416790 -  -5.5  -5.64421   AGTGTAAATAAAAAA             TCTCGGT AGGT ACCGAGG              TTTTTTATAATCCGA  87 30
 CT43_CH1359 1416513 .. 1416529 -    -5  -5.24129   TGTTTGCATAAAAAA              GGCGGG GATCT CCCGTC              TTTTTTTATGTTGTT  79 31
 CT43_CH1346 1403171 .. 1403201 - -11.3  -5.49568   AAGTGAAAATAAAAA       GAGGAAGCAACTT GTATA AAGTTGCTTCCTT       TACTATTCAAATTTC 100 28
 CT43_CH1345 1402287 .. 1402312 - -10.5  -5.54907   GTCACAAAATAAAAA         GAAACCTTCCG GACT CGGAAGGTTTT          CTTATTTTTCTTTAT 100 27
 CT43_CH1324 NONE
 CT43_CH1323 1383039 .. 1383064 - -16.3  -5.47159   GGTGAATATAAAAAA         GAGGACTCCTT TTAA AAGGAGTCCTC          TTTCATTTTTTAAGT 100 35
 CT43_CH1320 1381518 .. 1381542 - -12.2  -3.46602   GTGTTTACAGGATAA          GGTATCCCGC GTTAA GCGAGATACC          TTTTTCTTTTTTAGA  91 36
 CT43_CH1318 1377704 .. 1377757 - -11.3   -5.0133   TATCGTTCTAAAAAA GGGAGTAAATCAAAAAAGGAGTGAA TATA TTCACTCCTTTTTTGATTTACGATG CTGCCGATTGATCAG 100 18
 CT43_CH1315 NONE
 CT43_CH1314 1375760 .. 1375777 - -12.7   -5.8187   TATGTAATAAAAAAA             CCTGCCG AGCT CGGCAGG              TTTTTTTATTTTACT 100 31
 CT43_CH1312 1373401 .. 1373424 -  -9.6   -5.0065   TATGCATAAAGAAAA          CAGCCGCT TTATTATT AGCGGCTG           TTTTGTGTTGTATAT 100 16
 CT43_CH1311 NONE
 CT43_CH1310 1372974 .. 1372995 -  -7.3  -5.08088   AATGCGGAATAAAAA           GGCCCTTAA GGAA TCAAGGACC            TTTAAAGATTTTCAT  88 27
 CT43_CH1308 1371096 .. 1371113 -  -9.9  -3.75933   ATATAGTTCATTAAA             GGATGCA ACTT TGCATCC              TTTTTTGTTATTGAC  86 323
 CT43_CH1302 1367809 .. 1367823 -  -2.2  -3.32844   GTTCCCACCCTAGAA               TTCATT GTA AATAAA               TGTACTTGTGTTTGT  44 5
        dltA NONE
        dltB NONE
        dltC NONE
        dltD 1363593 .. 1363617 - -10.8   -5.1104   AAATATATACAAAAA          GACCACTTGA GTAAT TCAAGCGGTC          TTTTCATTAGTTTGC 100 32
 CT43_CH1296 1361436 .. 1361479 -   -20  -2.68015   TTTAATTATTATAAG TAAAAGTAAAAGGAAAAGCG TAAT CGCTTTTCCTTTTACTTTTT AATTTGAATATGAAG 100 24
 CT43_CH1292 1359403 .. 1359415 -  -6.3   -3.8823   ATAAAAATAAATTAA                TCTTC TGG GAAGA                TATGTTCTATATCAG  66 9
 CT43_CH1291 1359088 .. 1359119 - -16.2  -3.74975   GCACATAATAGATAA      TTAAAAAGTAGCTC TTAG GAGCTACTTTTTAA       TTTGTAATAATTTCT 100 22
 CT43_CH1279 1348548 .. 1348573 - -14.9   -4.7033   GAATTTAACATAAAA         GCACACGATTT ATAT AAATCGTGTGC          TTTCTTTTTAAGATA 100 33
 CT43_CH1276 1347207 .. 1347245 - -26.4  -3.07233   TGATAATCGTTAATA   GAAAGAAAGGGCCTGTAT ACT ATACAGGCCCTTTCTTTC   TATTATATTATGCAT 100 33
       kinB1 1343258 .. 1343278 -  -9.8  -5.50925   AAGGAACAGAAAAAA            CGTGATGA TTATT TCATCACG            TTTTTTGTATGAGTG 100 21
 CT43_CH1266 1338349 .. 1338383 - -15.4  -4.00042   GGTTTTATGAAATAA     GTATAATTACCCTTAT AGG ATAAGGATAATTATAC     TATGTGTAACGGAAT 100 20
 CT43_CH1264 1336664 .. 1336702 - -14.9  -4.75174   TATTTAAGTTAAAAA   GAAAAGTACCTATCTGT TATAT ACAGATAGGTACTTTTT   TGTCCCGTTATTTGT 100 139
 CT43_CH1251 1323573 .. 1323599 - -16.8  -3.81951   TTGGATAGTATGAAA         CCATTCTACCTA CGT TAGGTAGAATGG         TTTTTTAGTCGTTAA 100 30
 CT43_CH1245 NONE
 CT43_CH1244 NONE
 CT43_CH1243 1316583 .. 1316602 - -10.8  -5.71712   TTGGATAGAAAAAAA            GAGTAGCA ACTT TGCTACTC             TTTTTTTAGTATTGT 100 20
 CT43_CH1242 1316223 .. 1316243 - -14.1  -4.45168   TGTTGAAAATAGAAA            GAGGCAGAT AAT ATCTGCCTC            TAAGCCATATGTTAT 100 45
 CT43_CH1241 1314651 .. 1314677 - -10.2  -5.50925   AATGAATACAAAAAA         GACCTCTGCC GTTAATA GGCAAAGGTC         TTGCTAGACATATGT 100 177
 CT43_CH1240 1313725 .. 1313754 - -18.1  -5.09521   GGAAGAAAGGAAAAA       GAAAAAGCGCTGT AATT ACAGCGCTTTTTC        GTCTAAATTCTTTTC 100 11
 CT43_CH1239 1312662 .. 1312682 - -12.7  -4.74103   GTGGGAAGCTAAAAA            CTCCAAAGT AAA ACTTTGGAG            TTTTTAATGTTTCAT 100 29
 CT43_CH1228 NONE
        glcD NONE
 CT43_CH1226 1300176 .. 1300212 -  -5.2  -5.39721   GTAGCAGACAAAAAA   GCGGCTATCTCTTTACA TAGA CG-AAGGAGATAGCCGT    TTTCCTATTATTACG  84 55
 CT43_CH1225 1298942 .. 1298966 - -15.9  -5.22943   ATGAAACTTAAAAAA          GAGTCTTCTCA TTA TGAGAAGACTC          TTTTAATCTATTTAC 100 37
 CT43_CH1213 NONE
        sinR 1284891 .. 1284913 -  -7.8  -5.38054   TTTTATAAAGAAAAA           GAAGTGCT ACTTGTA AGCACTTC           TTTCTATTTATTATT 100 29
 CT43_CH1205 1278527 .. 1278568 - -14.5   -4.4267   TGGTAAAATGCAAAA CAAGCCTAACCCCATTCTA CATT CAGGAAGGGGCTAGGCTTG  TTTTAATTTCGATCA 100 63
 CT43_CH1204 1277944 .. 1277980 - -21.2  -5.56673   ATGCATAATAAAAAA    CACTGCTTGTATTCTG AATTA CAGAATACAAGCAGTG    TTGAGTTTCAATTAA 100 262
 CT43_CH1203 1276747 .. 1276793 - -17.6  -5.30616   TTATGGAAACAAAAA GAGGACTACCCCTGAGTCAGC TGGTTT GCTGACT-AGAAGTAGTCCTC TTTTAACTTGTGGTG 100 452
        sucA NONE
        odhB 1267413 .. 1267439 - -18.2  -6.17669   AACAAAATAAAAAAA         GGCTGTAGAATG ATT CATTCTACAGCC         TTTAATAGGTTAAAA 100 46
 CT43_CH1190 NONE
 CT43_CH1189 NONE
 CT43_CH1188 1261890 .. 1261910 -   -14  -5.03747   AAATCCTTTAAAAAA            GCACGCCG ATAGA CGGCGTGC            TTTTAATTATGCAAA 100 28
 CT43_CH1187 1261207 .. 1261226 -  -5.6  -4.77157   TTAATTTAGTAAAAA            GCAGGCCC ATAA AGGTCTGC             TTTTTTACTTATTTC  74 30
 CT43_CH1180 1254829 .. 1254865 - -22.6   -3.5456   AAGGGGAATAATTAA    TAAGAAGAGGGCGTTC AAAAA GAACGCCCTCTTCTTA    TTTTATAAAACGAAA 100 3
 CT43_CH1168 1243096 .. 1243122 - -16.8  -5.09426   TCGAACTGTAAAAAA         TCTCTGCTGTTA CGA TAACAGCAGAGA         TTTTTTTTATAAATT 100 32
 CT43_CH1167 1242542 .. 1242581 - -13.8  -3.81539   ACTCAAATATTGAAA  TCAAGTAAAAGAGTGGCT ACAA AGCCACTCTTTTACTTTG   GATTTGTCATATAAG 100 18
 CT43_CH1164 1240209 .. 1240219 -  -2.6    -2.914   TCTATTATATCAAAT                 TATT CTG AATA                 CTGCTCTCTATTATT  42 36
 CT43_CH1163 NONE
 CT43_CH1162 1239167 .. 1239185 - -10.3  -5.17576   TAGCAATGTAAAAAA             CAGGAGG GGTCA CCTCCTG             TTTTCAAATTACAAT 100 34
 CT43_CH1161 1237021 .. 1237043 -  -4.9  -5.67063   CGCATTATAAAAAAA           GACATCC TTATTTAGT GGATGTC           TTTTCAGGTAAATCT  85 10
       cotZ2 1236350 .. 1236407 - -22.3  -3.53276   ATTTACATAAGAATA CTCTTTAAGCATGGATTGGGTGGCAGA ATTA TCTGCCACCCAATCCATGCTTAACTCA TTATTTAGTTTTAAA 100 36
 CT43_CH1159 1235714 .. 1235740 - -13.9  -5.05601   TATTATATATAAAAA         GCGGTATTTCT GTATT AGAAATACCGC         TTTTTACTAACTAAT 100 32
 CT43_CH1156 1234396 .. 1234418 -   -15  -3.81137   TTTTAAATATGTAAA           GGTGGTAGAA TGC TTCTACCACC           CCAATAGTTTTTTAG 100 42
 CT43_CH1145 1225138 .. 1225165 - -13.6  -4.87318   TTTAAAATTGAAAAA        GCAGTAAAACTG ATAA CAGTTCTACTGC         TAAGTAAAAAATTAA 100 37
 CT43_CH1143 1224072 .. 1224082 -    -4  -3.19157   CAGTAACTCTATTAA                 TGAA ATT TTCA                 ATTTGTAGTGAGAGA  49 152
 CT43_CH1142 1223267 .. 1223280 -  -3.1   -3.6217   ATTCATCATACATAA               CTTCC TTTC AGAAG                CTTTTTTTTGTAAGA  50 19
 CT43_CH1141 1222048 .. 1222067 -  -7.2  -3.89881   ACCAATGGCTATAAA            TCCAATGA AGTA CCATTGGA             TTTGCTTTAGTACAA  71 292
 CT43_CH1140 NONE
 CT43_CH1138 1220139 .. 1220194 - -12.3  -2.85351   TCCTGCGACATTATA TGTAGGGTAATTAAAAAAAGATGCA CTTTAT TGCATCTTTTTTTAATTACTTTACC CAGTTTTATATGAAA  90 69
 CT43_CH1137 1218682 .. 1218719 - -15.3  -4.62872   AGGAATGCTTAAAAA   GGGAACAAAATTCTT-AT ATT ATAAAGAATTTTGTTCCC   TTTTTTCTTAGCGGA 100 33
 CT43_CH1132 NONE
 CT43_CH1131 NONE
 CT43_CH1130 1213715 .. 1213748 - -16.9  -3.62591   TTTATAAGCCGTAAA     GAAGAAGACCTGGTG TTTA CACCAGGTCTTTTTC      TTTTGCTATCCATTT 100 8
 CT43_CH1125 1206643 .. 1206668 -  -8.5  -4.50841   ATAATAATATGAAAA         CCTTCTACCTAT TAT ATAG-TAGAAGG         TTTTTTTTAATGTTT  88 32
 CT43_CH1123 1205412 .. 1205428 -  -5.8  -6.11229   AGGAAAATAAAAAAA              GCAGGC TAACC ACCTGC              TTTTTTTAATACGTT 100 31
 CT43_CH1121 1201852 .. 1201878 - -10.9  -5.95946   TCAATAATAAAAAAA         GCCATTCTTCC ATTAA GGAAGGATGGC         TTTTTTCTATACTAT 100 109
 CT43_CH1115 1195087 .. 1195122 - -10.5  -5.67283   AAGGCAAACAAAAAA    GCCCATTCATCCCAA AAACTA TAGGGACGAATGGAC     CGCGGTACCACCCTA 100 331
        trpS 1193952 .. 1193981 - -12.3  -3.94846   TGAGCAAAAGGTAAA       TTAAAAAACCGCC AATT GGCGGTTTTTTTA        ATTTTGTAGAAATCA 100 84
 CT43_CH1105 1187501 .. 1187523 - -10.6  -5.85244   AATGAAAATAAAAAA           GAGTTCGGAT AAA ATCCGGACTC           TTTTTTTAGTGTTGT 100 31
 CT43_CH1102 NONE
 CT43_CH1101 1182958 .. 1182974 -  -2.9  -3.64822   AGTTCCCCATTTAAA              CCCCTCC AAA AGAAGAG              TTACTTCTTGCCTTT  50 4
 CT43_CH1100 1182731 .. 1182750 - -12.2  -4.00532   TTCGGAAAGATTAAA            GAGGACCA AAGT TGGTCCTC             TTTTTTAATGTACAT 100 30
 CT43_CH1098 1181607 .. 1181632 - -13.5   -5.2696   TTAAAATGTAAAAAA         GTACATCAACA TAAT TGTTGATGTAC          GATGGAATCAAAGGT 100 33
        prsA 1180618 .. 1180649 - -13.2   -4.9181   ATAGAAGATTAAAAA      GCACAACCTTATGT AAAA AGATAAGGTTGTGC       TTTTTTAATTTCCTT 100 30
 CT43_CH1095 1178992 .. 1179020 - -14.8   -5.1523   TCTACAAGACAAAAA        GAAAACTCCTCT AATTA AGAGGAGTTTTC        TTTTTAGCGGTAGTT 100 29
 CT43_CH1092 1174349 .. 1174381 - -19.5  -5.00616   CCGGTGCGCAAAAAA      GAGATGCAATCTATT ACT AATAGATTGCATCTC      TTTTTTAGTTTGCTC 100 30
 CT43_CH1088 1168756 .. 1168792 -    -6  -5.48028   CAAATAAAAATAAAA   CCACCTTATAATCTCAA AGAC TTGGGAG-ATAAGGTGG    TTTTTATTTTTTATG  86 36
        rocD 1167002 .. 1167030 - -11.8  -5.05037   GAATATAAAAAGAAA        GAGGTTGTCCCA ACATG TTGGACAACCTC        TCTATTATTACGATA 100 33
 CT43_CH1085 1166609 .. 1166648 - -13.3  -3.70076   CGAAATGTAGTGAAA  TGAGAAAAGAGCTATCTT GTATA AAGATAGCTCTTTTCT-A  TGGTCTCGGATTATA 100 23
 CT43_CH1083 1165277 .. 1165296 -  -9.3  -4.96996   TTGAAATAAAAGAAA            CACACGC GTTATT GCGTGTG             TGTGTTGAACGTTTG  95 14
       gerPA 1164950 .. 1164960 -    -4  -2.74094   GTTTACATAAAAATT                 CAAT TCA ATTG                 CCTCCTTTAAGTTGA  46 32
       gerPB 1164687 .. 1164706 -  -3.5  -3.55761   GATTCATTTGTGAAA            CCTCCTT TTCAAT AGGGAGG             GTAAAAATATTCCTG  50 65
       gerPC NONE
       gerPD NONE
       gerPE NONE
      gerPF1 1163179 .. 1163197 - -11.8   -5.8901   AGATAAAAGAAAAAA             GTAGGAGA ATA TCTCCTAC             TTTTTTTAAGCTGTT 100 31
 CT43_CH1069 1152749 .. 1152769 -  -6.8  -4.84529   CTACAAATGTAAAAA            GGCATTCC ATAAA GGAAGGCC            TTTTATTGTTCTTGC  83 28
 CT43_CH1068 1152047 .. 1152064 - -11.3   -5.9873   TGATGATAAAAAAAA             GGATGGC TAAT GCCATCC              TTTTTTTAGGTTGTG 100 183
 CT43_CH1066 NONE
 CT43_CH1065 1150123 .. 1150155 - -13.5  -4.93877   GTTTACGAAATAAAA      GGAAGGGGCACCTTT TTG AAAGGTGCCCCTTGT      TATTTCCTAAACGAT 100 100
 CT43_CH1054 NONE
 CT43_CH1053 1137300 .. 1137315 -  -6.8  -6.14618   CAGAAAAGAAAAAAA              GACGCC ACAT AGCGTC               TTTCCTACGAACGAA 100 30
 CT43_CH1052 1135005 .. 1135019 -  -4.3  -4.16397   TGGTAAAATAAAATA               GCAAT TAAAT ATTGC               GGGTGGAAGGTTATG  62 261
 CT43_CH1050 NONE
 CT43_CH1049 1132211 .. 1132242 -  -9.6  -4.86621   ATTTCGAATTAAAAA      GAAGTAGCGCATC GTTTTTA GA-GCGCTACTTC      TTTTTTATTAATAAT 100 33
 CT43_CH1046 1128654 .. 1128681 - -11.3  -5.33026   TAATTTAAATAAAAA        CCGAACCGTCA TCTAAG TGGCGGTTCGG         TTTTCTTTATTTTTT 100 32
 CT43_CH1036 1119580 .. 1119601 -  -3.7  -6.02345   GAAGGACAAAAAAAA           TCCTACC GCGATTTT GGCAGGA            GGCGATGAGGTAGCA  93 350
 CT43_CH1027 1109844 .. 1109887 -   -17  -3.53366   TATATGTAATGATAA TAAGAGCGTAATTCTCTATG TTAA CTTAGGGAATTACGCTCTTA TTCGTTTAATTATTT 100 39
 CT43_CH1024 1105370 .. 1105410 - -25.9  -3.38178   GAATTAATCGCACAA  TAAACGAAACGCCTTCAAT TAT ATTGAAGGCGTTTCGTTTA  TTATATAAAATACTT 100 39
 CT43_CH1019 1098827 .. 1098854 -  -7.1  -5.38054   TGGTACAAAGAAAAA        GGAAACACC GGTGTGTAAT GGTGTTTCC         TTTTTGTTATTAAAT 100 186
 CT43_CH1011 1085828 .. 1085859 -  -6.8  -5.31519   AGATTTAAATAAAAA      TGTTATTACTCGATG TAA CAA-GAGTAATAACA      TTTTTTTATGTAATG  88 50
 CT43_CH1001 NONE
 CT43_CH1000 1078764 .. 1078788 -  -5.7  -5.45802   TTTTGAAAATAAAAA          TAGACACCTTA TTG TTAGGTGCCCA          AAAGTTTGATACATT  86 166
 CT43_CH0999 1078289 .. 1078304 -    -9  -5.04733   GAAGCATAAAGAAAA              GGCACT CTAA AGTGCC               CCGATTATTAGTTTT  95 33
 CT43_CH0998 1077761 .. 1077789 -  -2.5   -5.7946   TTGTTAATAAAAAAA        TTTATACGCTAAA ATA TTTTACGTAAAAA        AGACACCATAAAGTG  79 117
 CT43_CH0997 1076825 .. 1076840 -  -3.2  -4.17789   GAAGCATAAAGGAAA              GGCAAT CTAA AGTGCC               CGGATTATTAGTTTT  57 216
 CT43_CH0996 1076339 .. 1076365 - -12.5  -4.91852   GGGATTAAAAAGAAA         GCATCCTAAAT TTGTG ATTTAGGATGC         TTTTTTGTTTTAATG 100 83
 CT43_CH0991 NONE
 CT43_CH0990 1072036 .. 1072062 - -15.3  -4.94992   GTAAATGCATAAAAA         CACGGCATATC TATAC GATATGCCGTG         TCAAGGTCAATTTAT 100 85
         hpr 1071153 .. 1071195 -  -2.5  -4.67904   GATCAATTTGAAAAA GCGCTTCCACATCAGCTCG AAGTA CACGAAACTGCGGAAGCGC TAGCAAAACAAGGTT  62 96
        prsA 1069296 .. 1069314 -   -16  -5.37043   AGGGGACATAAAAAA             GCTCGGGC TTA GCCCGAGC             TTTTCATTATTTCTT 100 32
 CT43_CH0985 1066243 .. 1066264 - -11.7  -5.01535   TTAGAATGAGAAAAA           CACCTTGAT AATC ATCAAGGTG            TTTTTGTTATAAGCT 100 18
 CT43_CH0981 1063516 .. 1063540 -  -7.9  -5.86976   GCATAAAATAAAAAA          GACAGAAGCCT GAG AAACTTCTGCC          TTTGTAACCTAACTT 100 82
 CT43_CH0962 1044710 .. 1044745 - -14.9  -3.34013   GATTGGTTCAACTAA    TAATCAGTGGGGGAT GAACAA AACCCCCACTGATTA     AAGTTTCACTTTATA 100 318
 CT43_CH0957 1038378 .. 1038394 -    -8   -4.7173   TAGTAGAGTGAAAAA              GAAGCG GATGA CGCTTC              TTTTTTTTAGCGCTG  85 32
 CT43_CH0955 1037663 .. 1037707 -  -8.8  -4.97402   GAAAACTGATAAAAA CACCTCCATTGAATTTGCATAC TTA GTATGCGAATTCG--GGAGGTG TTTTTCTATTAAGCC  95 34
 CT43_CH0953 1035347 .. 1035359 -  -4.9  -2.85999   CTATCCTACACCATA                TGATT AAA AATCA                CTTAGGCTCGTTCAG  51 203
 CT43_CH0952 1032867 .. 1032877 -    -4  -3.06399   TTTAATTAAATTACA                 TAAG CTA CTTA                 AAATTCTATGCTACT  48 206
 CT43_CH0951 1032077 .. 1032089 -  -4.9  -3.61103   TAATGTGAGTGCAAA                CTTTA TAA TAAAG                TTGTTATTTGAGATA  58 461
 CT43_CH0943 NONE
 CT43_CH0942 1024463 .. 1024493 - -12.8  -3.76281   ATGCGAAATAAAAAG       CGTATGAAATCC AAACAGA GGATTTCATACG       TTTTTTATTGTATTT 100 30
 CT43_CH0936 1020466 .. 1020493 - -13.5  -3.33708   TAATCTACATAGGAA        TGAGTGGGGGA TGAAGG CCCCCCACTCA         TTGAAATTACACTTT 100 51
 CT43_CH0932 1018655 .. 1018675 - -12.7  -5.55664   GCATGATTAAAAAAA            GAGTAGGAT GTA ATCCTACTC            TTTTTTTAACGTTAA 100 49
 CT43_CH0929 NONE
 CT43_CH0928 1013913 .. 1013945 - -10.8  -4.79451   ATTTTAAATACAAAA      TAACCGATTCCTTA TACGT TAAGAAACCGGTTA      TTTATTTCCCTACTT 100 182
 CT43_CH0920 NONE
        dnaI 1004978 .. 1004996 -  -6.7  -5.15969   TTTGAATGCAAAAAA             GCCCTAG GGGGA CTAGGAC             TTTTTGCTAGAATGA  88 186
 CT43_CH0917 1003125 .. 1003140 -  -6.8   -5.3167   TAAAAATAAAGAAAA              GACACC AAAA GGTGCC               TTCTGCCAACTTAAA  88 119
 CT43_CH0915 1001284 .. 1001310 - -10.2  -4.57569   GCATTTTTTGAAAAA         GACCAACGATTC ATT AAATCGATGGTC         TTACGTTTATATAGT  93 92
 CT43_CH0912 NONE
 CT43_CH0911  997042 ..  997067 - -10.6  -4.62471   TTCAATTTGTAAAAA         GCCTTTAACT TGTTAT AGTTAAAGGC          TTTTATCATCATGAT  95 47
 CT43_CH0909  995463 ..  995494 -    -9  -3.58533   GCAGAATGTGTGAAA      GCAAATAATCAA TTGGTAGG TTGATTATTTGC       TTTCACTTTATAATT  80 33
 CT43_CH0908  993533 ..  993550 -  -5.6   -5.9218   CATATAAGAAAAAAA             GACATC AATTAA GATGTC              TTTTTTTCTTTGTAA  95 520
 CT43_CH0907  993191 ..  993220 - -11.6   -3.9712   TCACTTTATTATAAA       GAAAAGACACCC ATATAA GAGTGTCTTTTC        TGATAGTTTTTTAGC 100 36
 CT43_CH0903  990835 ..  990850 -  -7.6  -4.99645   AGTTCATAAAGAAAA              GACACT TTAA AGTGTC               TTCTACAGATTTGAA  89 58
 CT43_CH0900  987416 ..  987451 - -15.2  -3.81447   TATAGCGTATAATAA    TCTATATATTTATGTA ATTT TACATAAATATATAGA     TTGTATAATATAAAG 100 186
 CT43_CH0898  986681 ..  986698 -  -7.7  -6.19443   CATATCAAAAAAAAA             GACACTC TCAA GAGTGCC              TCTCCTTAGCAGCCG 100 31
 CT43_CH0897  984370 ..  984399 - -15.9  -4.59773   CGCCAGTTTCAAAAA       GCCTTCACGCAAT GATA ATTGCATGAAGGC        TTTTGATGTTTTCTT 100 39
 CT43_CH0893  981283 ..  981318 - -20.8  -3.50853   CTTTCTCAATTATAA    GAAAAGCCTCAAGTAT TCAT ATACTTGAGGCTTTTC     CAATGGAAAGATAGG 100 61
 CT43_CH0890  977745 ..  977757 -  -7.7  -3.32424   AGTACAGAATCAAGA                CGTAC GAT GTACG                TGAAGTTTCAGCGTA  69 425
 CT43_CH0889  976526 ..  976566 - -12.2  -3.02263   AGATTCCTTTTAACA  TTTTTTAGATGCTACCTT GTTTG AAGATAGCATCTAAAAAG  AAAATCTAAGTGAAG  90 103
 CT43_CH0887  974546 ..  974577 -  -3.2  -5.01546   AAATTTATACAAAAA      TAGCCGAATATT-TA CTA TATAATAGTCGACTA      TTTTTGTACGGAGAA  67 91
 CT43_CH0878  962177 ..  962220 - -12.3  -3.69437   GAAGTGTAAAATTAA TTAAATATCTATCAATA-GA ATAAA TCATATTGATAGATATTTAA TATTGTAAATCTGCA  95 360
 CT43_CH0877  960975 ..  961032 - -24.1  -3.56758   AATTAATACGAAATA GCTCTTTAATAAAAAATCCGACTCATT AAAA AATGAGTCGGATTTTTTATTAAAGAAT AGTGCTAATTTTGTG 100 30
 CT43_CH0872  956844 ..  956866 -    -5   -5.0133   CATCTCCTCAAAAAA           GATTTATAGT TAT ATTATAAATC           TTCTTAAGGAGGAAA  75 417
 CT43_CH0870  955561 ..  955576 -  -2.6  -3.21924   GCATGTGCTATAACA              TCATAA TTTT TCATGA               AGATCACCCGTTTTT  44 40
 CT43_CH0869  955209 ..  955219 -  -2.4  -4.18044   TGACAAATAAGCAAA                 GCGC GCA GAGC                 TAAGATTATATATAT  55 81
 CT43_CH0863  948737 ..  948765 - -15.5   -4.2349   TTGGTATATGGAAAA        GTTGCACCTCTAA TTA TTAGAGATGCAAC        TTTTTACCATTCACG 100 29
 CT43_CH0860  946127 ..  946146 - -13.6  -4.45693   GAATAGAAAGAGAAA            GGTCACCC GTTT GGGTGACC             TTTTTAGTGTAGTTT 100 101
 CT43_CH0856  941733 ..  941759 - -13.9   -4.3467   AGTTTTATAGGAAAA         GCATAGCGTTA ATGAG TAACGCTATGC         TTTTTTGTTGCAATG 100 7
 CT43_CH0852  938394 ..  938429 - -14.9  -3.34013   GATTGGTTCAACTAA    TAATCAGTGGGGGAT GAACAA AACCCCCACTGATTA     AAGTTTCACTTTATT 100 36
 CT43_CH0847  930970 ..  930984 -  -6.4   -5.9218   TATATAACAAAAAAA               GACACC TTA AGTGTC               TTTTTTGATTACTAT 100 72
 CT43_CH0846  930306 ..  930321 -  -6.8  -5.26119   TGTCCAAAAAGAAAA              GACACC TTAA GGTGCC               TCTCTCCGACTTGAA  88 403
 CT43_CH0843 NONE
 CT43_CH0842  924833 ..  924861 - -11.8  -4.46757   AACAGATGTATAAAA        GGCATCCGAGAT ATACA ATCTCTGATGCC        TTTTAAATTAATACA 100 51
 CT43_CH0839 NONE
 CT43_CH0838  919070 ..  919090 - -11.1   -4.3467   AGGTGCAGAGTAAAA            GGGAAGCCG ATT CGGCTTCTC            TTTTATTTTGAGTTA 100 38
 CT43_CH0834 NONE
 CT43_CH0833  913007 ..  913052 - -12.1  -4.95155   GTTATACCACAAAAA CTCCCTTTCAAAATAGCCATT TCTT ATTGGTTATTTTGAAAGGGAT ATGTAACACATCTGT 100 3
 CT43_CH0830 NONE
 CT43_CH0829  908631 ..  908656 -  -9.1  -4.78848   TGTGTAAATAGAAAA         CTTCCACCT TATTATCT AGGTGGAAG          TTTTTGTTTTTGTAT  93 11
       sasP1  907676 ..  907701 - -17.7  -4.39877   TCAATAATTAAGAAA         GGTCTCAAGGC ATAT GCCTTGAGACC          TTTTTGCCATATATA 100 42
        gapN  899274 ..  899311 - -14.5  -2.93435   GGAAGTATTTATATA   GAAAAGAAGCTGATTTA AAAA TAAATCAGCTTCTTTTT    ATAAGATTAAACTAA 100 32
 CT43_CH0818  895243 ..  895271 - -11.8  -5.86976   TTACAAAAGAAAAAA        CGAGCAAATTGC GTTAT GCAACTTGCCCG        TTTTTCTTTTCGTTA 100 10
 CT43_CH0817  893946 ..  893975 - -13.7  -6.04324   TTAAAAAATAAAAAA       GCCAAGGAGATAA TTTA TTTTCTCCTTGGC        TTTTAAGATAATTCT 100 46
 CT43_CH0816 NONE
 CT43_CH0815  891039 ..  891085 - -18.2  -4.36914   TTTTGGGCGAGAAAA GGGGGGAATCCAAAAGATTATT AAA ACTGAACTTTTGGATTCCCCCC TTTTTTATTTATCCT 100 125
 CT43_CH0814  890322 ..  890336 -  -6.4  -3.36803   CAATTGGATTTACAA               TACTCG GAA CGAGCA               ATAGCTTATGGATTT  62 391
 CT43_CH0812  887495 ..  887517 -  -7.8  -3.65046   TTTGTATGTGAAGAA           GGTACTAC TAAGGAT GTAGTACC           TTCTCCTTTTATAAA  73 51
 CT43_CH0808  885790 ..  885809 - -12.2  -4.78572   TGCGAAGTAATAAAA            CCCCTTAC GACG GTAAGGGG             TTTTTTGTTTTATCC 100 67
 CT43_CH0802  881261 ..  881293 -  -5.8  -5.04597   ATTTATAGAGAAAAA     GTTCCCACTAT-TAT TTAC ATATATAGTGGGAAT      ATATATTTCCATAAG  80 55
 CT43_CH0799  879017 ..  879038 -  -7.3  -5.37171   AAGAGTAAATAAAAA           CATCGCCAC TTGG ATGACGATG            TTTTTTCATTAAGAA 100 34
 CT43_CH0789  869714 ..  869743 - -12.2  -4.14193   ATAATAGTACAGAAA       GATAGCTCGCCG TTTTAT CGGCGAGCTATT        TTGTTATGCTTTTTT 100 29
 CT43_CH0785  865962 ..  865981 -  -8.6  -4.87786   CCAATCTCATAAAAA            GCATACCA TGAA CGGTATGC             TTTTTATATTAAGGA  93 59
 CT43_CH0780  863054 ..  863075 -  -4.4  -5.63517   GCTTTAAAGAAAAAA           GAGGTCAA TTTTAT TTGGCCTC            TTTTTCTGTTTTATT  83 14
       cotJA NONE
       cotJB NONE
       cotJC  860697 ..  860717 -  -6.2  -5.80817   TTTAACATAAAAAAA            CACATATC GCTAG GATACGTG            TATTAAAAATATATT 100 28
       brnQ2  859149 ..  859181 - -19.4  -4.67048   CGATGTGAAAATAAA      CAGAAGCAAGCATG GATTT CATGCTTGCTTCTG      TTCTTTATTTTGTAG 100 30
 CT43_CH0770  855131 ..  855141 -  -3.2  -3.17075   TGCCTTTTAAGTTAA                 TCAC TGG GCGA                 CAACCTCCATACCAT  45 15
 CT43_CH0769 NONE
 CT43_CH0768  853253 ..  853274 - -10.9  -5.65927   TAGGTAAATAAAAAA           CGCAGGAGT GTAA ACTCCTACG            TTTTTGTTTATTCAT 100 33
 CT43_CH0767  851398 ..  851425 - -12.8  -5.92337   ATAGAGTAAAAAAAA        GAGCCAGCCTCA ACGA TGAGACTGACTC         TTTTTTTTAACTAGT 100 36
 CT43_CH0759  843064 ..  843084 -  -6.1   -5.7946   TTTGCAAGAAAAAAA            GCCGCTAAA TTA TCCAGCAGC            TTTTTCTGTATTTTT 100 14
 CT43_CH0758  841015 ..  841060 - -22.4  -4.11371   GAACAGTTGTTAAAA TATAATAAGAAAGAGACGCT TAAGTT AGCGTCTCTTTCTTATTATA ATGATTGTTTTAAAT 100 21
 CT43_CH0756  838473 ..  838506 - -17.7  -5.47159   CTGAAGAAATAAAAA     GAAGCAGTACTCTAC CTCC ATAGAGTACTGCTTC      TTTACTATTCATTGT 100 30
 CT43_CH0755  837850 ..  837884 - -15.3  -4.38171   GATATGATATCAAAA    TAAAAGGATGGTGCTG CTTA CAGC-CCATCCTTTTA     TTTATTGTCCGTAAA 100 63
 CT43_CH0743  829439 ..  829476 -  -7.2  -4.61284   AAGATGAAATGAAAA   CGAATCCATTTTGA AAAATATGAA TCAAAGTGGATTCG    TTTTTTGTTTACCAG  80 34
 CT43_CH0739  826229 ..  826252 -  -4.7  -4.99645   AGTTTATAAAGAAAA          GGAAGAG-TA GTGAA TACCTCTTCC          TTTTTAGCGTGTTAA  75 37
 CT43_CH0738  824534 ..  824544 -  -5.4  -3.78034   CAGCGACATGAATAA                 TACG CTG CGTA                 TCCACTATATACGTT  61 102
 CT43_CH0736 NONE
 CT43_CH0735  821830 ..  821858 - -11.9  -4.48175   AAAAGTGAATGAAAA        GAAAAAACGAGGA GTT TCCTCGTTTTTTA        AGCTTTTGGCATTGG 100 23
 CT43_CH0734  821454 ..  821480 - -13.8  -5.10077   AAACATTTTAAAAAA         GCGCCATTCTCC GGA AGAGAATAGCGC         TATATTTTACATTTG 100 32
 CT43_CH0733 NONE
 CT43_CH0732 NONE
 CT43_CH0731  820116 ..  820137 - -10.9  -5.76237   GAGAGAAAGAAAAAA           CCACCTCAC GTAT ATGAGGTGG            AATAATTGTTAATAT 100 34
 CT43_CH0730 NONE
 CT43_CH0729  817570 ..  817583 -  -6.7  -4.64334   AATGTGGCAACAAAA               GCAGT GATA ACTGC                AATAGCGAAACCAAT  79 235
 CT43_CH0728 NONE
 CT43_CH0727  815091 ..  815110 - -10.8  -5.17576   GAGGAATGTAAAAAA            GCATACGA TTAA TCGTATGC             TTTTATATCTGTTAA 100 14
 CT43_CH0723  811498 ..  811534 - -15.4   -4.3898   ATGATTGTTATAAAA    GAAAAGTAGAGCATCG GATTT CGATGCTCTACTTTTT    TAATGTGGTAAGAAT 100 25
 CT43_CH0719  808317 ..  808342 -    -4  -4.11033   ATCAAAGAGGATAAA         TAGAGCCGACC TTTTT GGG-GGCTCTA         TTTTGCTTTTTGTAC  58 23
 CT43_CH0702  791537 ..  791563 -    -3  -3.33661   TATTCAATTATAAGA         GGTATATTGCGT GGC ATACAATTTACC         TAACTAAATATGGCA  46 21
 CT43_CH0701  791020 ..  791043 -  -6.1  -5.08367   AATATAAATTAAAAA          GGATCTC-CA GTTTA TGTGAGATCC          TTTTTTGTTAGTAAA  82 203
 CT43_CH0698  778612 ..  778651 - -16.8  -2.94962   ATATGACTAAGTAGA  GAAAAGACGTTATCTTCA TTTG TGAAGATAACGTCTTTTG   TTTTTAAATATCAGG 100 29
 CT43_CH0693  774388 ..  774401 -  -2.4  -2.60283   CAGCTAAAGCAATAC               GATG TTTGCT CATC                TGAAATCATCTCCTA  40 21
 CT43_CH0692 NONE
 CT43_CH0691  772225 ..  772249 - -11.6  -5.64274   TGATGTACAAAAAAA          GAAACCTGAA TGATT TTCAGGTTTC          TTTCGGGCAAAGCAT 100 76
 CT43_CH0681  762714 ..  762738 -  -6.6  -5.61913   AAGAAATAGAAAAAA         GCTATCTTATC ATAA GA-AAGATAGC          TGAATATTTCGTATA 100 42
        qoxA NONE
        qoxB NONE
        qoxC NONE
        qoxD  758664 ..  758687 - -15.4    -5.626   GAGGGGATAAAAAAA          GACTGCTGAG GAAT CTCAGCAGTC           TTTTTCATGTACATT 100 39
 CT43_CH0676  756624 ..  756647 - -12.5  -5.73563   ATGAAATTAAAAAAA          TGCCCCTCA ATTATG TGAGGGGCA           TTTTTTACTCTAATA 100 30
 CT43_CH0675 NONE
 CT43_CH0674  755854 ..  755895 - -18.4  -3.77489   AAGTGAAGATTGAAA TATAAGAAAGGCTTTCCC GTATTG AGGAAAGCCTTTCTTATA  TCTTTTTATACAGTA 100 21
 CT43_CH0670  752013 ..  752041 - -11.8  -5.08178   ATATAGATATAAAAA        CACCCCTTCC AAGTAATAA GGAAGGGGTG        CTTTGCTTAACTAAT 100 32
 CT43_CH0669  750287 ..  750314 - -11.4  -4.35874   GAAGAGAAGTGAAAA        GAAGGCAATCCA TGTA TGGATTGCCTTT         TTCATTATTTTTTAT 100 30
 CT43_CH0659  740144 ..  740187 - -13.6  -3.71174   AATAAATATTCGAAA TAAAATAAAAATCCCTCATA GCAG TATAAGGGATTTTTATTTTT AATTAAGAATTTACT 100 28
 CT43_CH0658  739189 ..  739219 -  -9.2  -5.33866   TAAAGGTATAAAAAA      GCGAGTCAT-CTA GTGTAA TAGAATGACTCGC       TTTCAATTTGTAAGT 100 47
 CT43_CH0657  738650 ..  738677 -  -7.1  -2.85459   TATGCATAAGAGAAG        CCCTCTTAC AGTATGAAAA GTAAGAGGG         GCCTTATCTCGTTAT  63 122
 CT43_CH0655  737105 ..  737128 - -12.6  -5.38047   TATGTATATAAAAAA          GCTGACAAAT AATT ATTTGTCAGC           TTTTTTTAGTGTAAT 100 14
 CT43_CH0652  733165 ..  733180 -    -4  -2.68071   TTCAAGCTAAATCCA              TTCACG ATTT CATGAA               TCAAATGGTTGTTAA  46 52
 CT43_CH0648  730058 ..  730084 - -10.9   -5.3321   AATGAATAATAAAAA         CCAGAGCATTC TTTAG GAGTGCTCTGG         TTACATAGGATGCTT 100 349
 CT43_CH0647  729162 ..  729189 - -12.1  -5.04222   GAAGTAAAGGAAAAA        GGACATCGCTC AAATTA GAACGATGTCC         TTTAGTAAGTTTAAA 100 48
 CT43_CH0615  703710 ..  703721 -  -2.2  -4.29325   GACCAACAGGGAAAA                CCAA TGAT TCGG                 GTGTAGCGTTTCATT  56 480
 CT43_CH0603  696234 ..  696250 -  -7.3  -5.95539   GCTGAAATAAAAAAA              GACAACC AAA AGTTGTC              TTTTTTTTATTGTAT 100 298
 CT43_CH0597  687975 ..  688002 - -11.4  -5.55664   TTATCATTAAAAAAA        GACAACGATGGA TTAT CCCATCATTGTC         TTTTTTACTTTGCTT 100 10
        glpT  674269 ..  674297 -  -5.4  -5.29782   TATATGTAGAAAAAA       GAGAG-GCATTCT GGAA AGAATGGTCTCTC        TTTTTTTGATAAGTA  80 53
 CT43_CH0584 NONE
 CT43_CH0583 NONE
 CT43_CH0582 NONE
 CT43_CH0581 NONE
 CT43_CH0580  668365 ..  668398 - -14.1  -5.85244   AATGAAAATAAAAAA     TAGCTCTTAGCATGT ATGT AAATGCTAAGAGCTA      TTTTTATGTTTATTT 100 35
 CT43_CH0572  662500 ..  662511 -  -2.2  -2.52464   TTGCTCCTTAATCTA                GAGT ATCA ACCC                 ATCGATATCCGACTC  39 6
 CT43_CH0571  661080 ..  661110 - -15.7  -3.87869   TTAATGCGGGATAAA       GAAACACGACTAT TGATG ATAGTCGTGTTTC       TTTATGGATGGTAAT 100 4
 CT43_CH0569  659331 ..  659349 -  -7.4   -5.5074   CAACTGAACAAAAAA             GCTGCTTA TAT TTAGCAGC             TTTTTTCGTCTTCAT 100 18
 CT43_CH0563  651519 ..  651538 -  -2.9  -4.34402   TGCGCTACACGAAAA            TACCTGT CGTCTC ACAAGTA             TTAGGAGTTGTAGTT  57 506
       gerKA  643916 ..  643934 -  -2.4  -3.18452   TTGGTAAAGAAAGTA             TACCAACT CCG ATTTGGCA             CTGAATAACGAAAAA  44 63
       gerKB NONE
       gerKC  641747 ..  641783 - -19.8  -3.89212   TATCGATATACGAAA    TAAAAGGTTGTATGCC GCATG GGCATACAACCTTTTA    TTTTAGGACACCACT 100 23
 CT43_CH0549  635922 ..  635940 -  -9.6  -5.45652   ATTTTTAATAAAAAA             GAGAAGCC AGC AGCTTCTC             TTTATTTAATCCGTT 100 31
        cls1  631625 ..  631647 -  -6.4  -5.49568   AAGGGAAAAGAAAAA           GCAATCAA GATGAAG TTGATTGC           TTACAGTAAAGGAGA  88 26
 CT43_CH0545  630627 ..  630645 -  -3.2  -3.86194   AATTTGTCTCATAAA             TTATCCCT CAA AGAAATAA             CTTTCTGCTAATTCA  52 7
 CT43_CH0544  628703 ..  628747 - -11.8  -3.79164   CCAGAAACAAAGTAA TTGAACGAAAAAACAGGAGCC ACAA GGCTCCTATTTTCT-ATTCAA TCGTCTTCAGTAATA 100 18
 CT43_CH0540  625053 ..  625069 -  -6.6  -5.75478   AATGAGATAAAAAAA              CGATGA GTGAG TCATCG              TTTTTTTTATTTGGT 100 32
 CT43_CH0536  620977 ..  621001 -  -7.1  -5.38497   AGTGAAATGAAAAAA          CCAGCTCCATC AAA GAGAGAACTGG          TTAGAATAAAATTAT 100 37
 CT43_CH0535  619239 ..  619289 - -14.5  -2.63301   GACAGCTTTAGAGGA GAAATAATAAAAAAGACGCTTCTA ATTT TAGAAGCGTCTTTTTG-TTATTCC ATCATATGTGCAATT 100 19
       lldP1  616118 ..  616139 - -14.5  -4.67234   ATGTAATGTGAAAAA           CACCGATCC ATTT GGATCGGTG            TTTTATTTTTAAAAG 100 34
 CT43_CH0528  611355 ..  611384 -  -3.8  -5.29782   TACATGTATAAAAAA       TAGATGTCTTGAT TATTT AT-AAGACACCTA       TTCGTTATTGTATAC  74 79
 CT43_CH0527  610193 ..  610239 - -19.3  -4.62904   AAATATGTTGAAAAA TATAATAAAAAGGCTGTCTAGA AAGA TCTAG-CAGCCTTTTTATTATA ATTTTTTATGTTCAT 100 21
 CT43_CH0526  608689 ..  608707 - -13.2  -5.46706   ACTGCAAAAGAAAAA             GGCGTGAT TAA ATCACGCC             TTTTTCTTTATGCTA 100 56
 CT43_CH0523  606916 ..  606943 - -15.8  -4.69464   AAAATACTTCAAAAA        TAAAGAAGGAGC ATAG GCTCCTTCTTTA         TTTTTTTCTCCATTT 100 23
 CT43_CH0519  601921 ..  601942 -  -8.8  -5.48825   TAGTATTGAAAAAAA           CAGAGAAG GAGAAA CTTCTCTG            TTTACTTTTGTATGT 100 27
       fdhD1  589043 ..  589064 - -11.7  -4.48987   TTTTTATAACTAAAA           TAACTCCTC GATT GAGGAGTTA            TTTTTTAAACATTGG 100 30
 CT43_CH0510  588262 ..  588286 - -14.5  -5.26875   GTTGTAATGAAAAAA          GCATCTTTCTT ATT AAGAAAGATGC          TTTTGGAAAACTCCC 100 74
 CT43_CH0509  587964 ..  587991 - -17.2  -5.84432   TATAATATAAAAAAA        GCTGATTGCTTC TTAA GAAGCAATCAGC         TTTTTTCATTGTTAG 100 50
 CT43_CH0507  586793 ..  586819 -    -8  -3.76888   TATTCATAATAAAGA         GTCAGTGGTATA CGA TTTCCCACTGAC         CGAAGTAATTATTCA  77 34
 CT43_CH0506  585267 ..  585293 -   -11  -4.46587   TTATGAACAAAATAA         CACCAGTAGT GTTTACT ACTACTGGTG         TTTTCACACGCATAT 100 40
 CT43_CH0505  584622 ..  584642 -  -6.9  -5.46129   CAAGAAAGTAAAAAA            CATCCTC CAAACAT GAGGATG            TTTTTTATTATTTAT  93 33
 CT43_CH0503  582061 ..  582085 - -10.1  -5.04325   TTTAAAGTATAAAAA          GAGGTCGTA AGTTTTG TACGACCTC          TTTTGACATTTTTAT 100 110
 CT43_CH0502  581175 ..  581195 - -15.5  -4.29325   TATTAATAGCGAAAA            GCAGTGCCT AAA AGGCACTGC            TTTTTTGAGATAAGA 100 288
 CT43_CH0482  559101 ..  559127 -  -5.2  -5.55769   CTTCATAATAAAAAA         CAGTAGAGGA TTTTATT TCTTCTACTG         TTTTTTTGCATCTTA  87 38
       opuD1  547252 ..  547287 - -17.9  -4.28977   ATAATAGAGTGAAAA    CCCATTCGTATGAAA ATTATA TTTCATACGAATGGG     TTTTATTAATCTACT 100 88
 CT43_CH0462  529697 ..  529717 -  -8.4  -5.41746   AACGTCGTAAAAAAA            CTCTATAC AATTA GTATAGAG            TTTTTTTGTTTTCTT 100 132
 CT43_CH0461  522456 ..  522496 -  -9.5  -4.76213   ATAAATTTAATAAAA CAATTAAAAAGTTGATTT CTTAAT AAATCAACTTTTTAA-TG  AGTTGAAACGTTTGT 100 71
 CT43_CH0457  520176 ..  520212 - -16.8  -3.04203   CTAAGGGATAAATCA    GTCCTCCACCTCAT ACATATAAA ATGAGGTGGAGGAC    ATGTTATGGGGATTT 100 259
       hemL1  516082 ..  516112 - -14.3   -5.5762   ATGAAATAGAAAAAA       GGAAAAAAGAAAG GTGAG CTTTCTTTTTTCC       TTTTAATGACGGGAT 100 40
 CT43_CH0452  511396 ..  511418 - -16.4   -4.7254   AGTTTTTAGTAAAAA           GACCTGCTGA ATT TCAGCAGGTC           TCAAATTGTTACTAT 100 99
 CT43_CH0451  510016 ..  510041 -   -12  -4.33674   AACATATAACAGAAA         CAGCTCCTTT AGCATA AAAGGAGCTG          TTTTTTTATTCGTCT 100 31
 CT43_CH0445  506316 ..  506337 - -10.2  -5.80003   GCAATAAACAAAAAA           GTGTTCCC TAAATT GGGAACAC            TTTTTTAATCGTAAG 100 30
 CT43_CH0443  504049 ..  504085 - -13.4  -3.63782   GAAGATCATTTGAAA   CATTAAAAAAAAGCGAC TTGA GTCGC-TTTTTTTAATG    TGGAAGTAATTCCAG 100 20
        sspK  503250 ..  503284 - -12.4  -5.08601   TTATTGCAAGAAAAA     TAAAAACCAGAGAG CACATAT CTCTCTGGTTTTCA     TCTTTGGTAGGCGTT 100 248
 CT43_CH0438 NONE
 CT43_CH0437  499657 ..  499706 -    -9  -4.22314   CATGACGAAAAAACA CCCCACCCTCGAAATTTTTATA TCAATCTT TA-AAAAATTTCG-GGGTGGGA ATCGAACCCACTAGA  88 159
 CT43_CH0436 NONE
 CT43_CH0435  498717 ..  498744 - -18.6   -4.8048   TGTCCACAGCAAAAA        GACCCCTTATGC ATAA GCATAAGGGGTC         TTTTTGCTTACTTCT 100 110
       glsA1  483138 ..  483156 - -11.8  -5.63517   TGGTGAAATAAAAAA             TCCTGCTA GTA TAGCAGGA             TAACTCGCGATTAAA 100 36
 CT43_CH0422  482625 ..  482647 -  -9.2  -5.47159   CTTAATAAATAAAAA           GCACCTACAT ACT ACATAGGTGC           TTTTTAGCGTATGTC 100 29
 CT43_CH0420  481053 ..  481078 -  -9.1   -4.3467   ATTTGTATAGTAAAA         TCGTACGAGTA TGTA TACTTGTACGA          TTTTTTAGTGAACTA  88 84
       rocR1 NONE
 CT43_CH0415  475872 ..  475889 -  -5.5  -5.95539   TGGCAAATAAAAAAA             TCGGGCT AAGT AGCTCGA              TTTTTTTAGTATTAC  95 37
 CT43_CH0408  468566 ..  468585 - -12.2  -5.57054   AATAACGTAAAAAAA            CGTCAGCT TATA AGCTGACG             TTTTTTTATAATGTA 100 31
 CT43_CH0405  465996 ..  466017 - -10.9  -4.37658   AACTTTTCGACAAAA           CAAGCCCACC TAA GG-GGGCTTG           TTTTATTTTATAGTC 100 33
 CT43_CH0404  465683 ..  465719 - -16.9  -4.14764   GGCTAAATAACGAAA    TAATCCCCACCTTAT ATTTTTA ATAAGGTGGGGATTA    TTATACTACTCTGCA 100 31
 CT43_CH0403  465063 ..  465087 - -10.1  -5.42975   GTACATAAAGAAAAA          GAAAAACCGCT AAT AGCGGTTTTTT          TAGCTGAAAGCAATA 100 25
 CT43_CH0401  461200 ..  461223 -  -9.7  -5.46129   TAATAAAGTAAAAAA          CCAAGCAAA TTTTAG TTTGCTTGG           TTTTTTTGTTAAACA 100 34
 CT43_CH0397  456491 ..  456512 - -10.9  -5.88471   TATCACTAAAAAAAA           CGGGT-CCTC TAT GAGGGACCCG           TTTTATTTGCTTCCT 100 28
 CT43_CH0393  454000 ..  454017 -  -4.1  -4.45696   TGGAAATAAAAAAGA             GCCTC ATATAAGA GAGGC              TTTTTTACTTTTTAA  62 30
 CT43_CH0392  451130 ..  451165 - -16.4  -3.06046   ATTACAAGGATAAAT    GAAAAGGCAATGAGGA ATAT TCCTCATTGCCTTTTA     GTTTCTCTTCACTAA 100 23
 CT43_CH0384  443376 ..  443413 - -11.4   -4.8667   GATAGGTGATAAAAA   GGACTTTGGGCTGCAT AATAAA ATGCAATCCAAAGCCC    TTTTTGGTTTTATAC 100 79
 CT43_CH0381 NONE
 CT43_CH0380  438383 ..  438423 - -15.2  -4.59773   GCGCACCGTTAAAAA TAA-AAAAGATCCTCTTCT TATG AGAAGAGGATCTTTTCTTA  TAGCGTTTTAGTCTT 100 23
 CT43_CH0372  432019 ..  432054 - -17.9  -4.35663   AACAATATGAATAAA    GAAAAGGCATTAGCT TTTATG AGCTAATGCCTTTTC     TTTGTGATTAACATG 100 435
 CT43_CH0364  419702 ..  419731 -  -9.4  -5.14563   CGTTTGATTAAAAAA       GCACAAACCTTT TTAAAT AAGGGTTTGTGC        TTTTTCTTTAAAACA 100 33
       topB1  415490 ..  415545 - -13.7  -3.19941   AAGGAAGTAAAATCA TTCATTAAAATAAAAGGTTCCTACC GATAGT GGTAGGAACCTTTTTGTTTAATCAA ATTTTAATTTTTTTA 100 18
 CT43_CH0356  406064 ..  406078 -  -2.8  -4.93318   TAGAATGGAGAAAAA               TGGAGA GAA TATCCA               ACCGAAGTGCATTGT  68 397
 CT43_CH0347  396699 ..  396720 -  -2.3  -3.13371   CACCGTATGAATATA           TTCCTTTTC GTTT GAAACAGAA            GTTACATTATAAAAC  42 32
 CT43_CH0346  395762 ..  395786 -  -5.7  -3.47012   CACATAAAATGAACA          CTTAATCAGTG GGG CACTGTTTATG          AATCTTTTGAATGGC  61 49
 CT43_CH0344  393293 ..  393350 - -21.2  -2.74018   TCAGTAAAAATAGAT GTAT-TTTATAGCAAAAAAGCAAGCTC TTAGT GAGCTTGCTTTTTTGCTATAAAGAAAC TTCTTTCTTGTTTTT 100 60
 CT43_CH0342  390044 ..  390088 - -19.1  -3.33009   GAAAAGGGTTTATAA CAAATAAAGAAGTTCAACA GTAATTT TGTTGAACTTCTTTATTTG TTTACTCATTATCAA 100 27
 CT43_CH0338  385499 ..  385522 - -11.8  -3.87562   ATAGAAAATATAGAA          GCAAAGACCA ATAG TGGCCTTTGC           TTTTTTTTAATTCCG 100 151
 CT43_CH0330  379014 ..  379060 - -14.5  -3.04274   TAAGGAACAAGTATA CCCCCACATACTTCTCTATTC AAATG GATGAGAGATGTACGTGGGGG TTTTCCTGTTTACTA 100 159
 CT43_CH0328  376659 ..  376685 - -15.4  -3.74391   CATAGAATAAAGGAA         GAGGAATTCTTA AAT TAAGAATTCCTC         ATGTTTGTATTATTT 100 35
 CT43_CH0327 NONE
 CT43_CH0326  374569 ..  374599 - -18.5  -4.59982   GTAGAATGAAACAAA       GACACCCTCAAGA AAAGA TCTTGAGGGTGTC       TTTTACGCTTTTTTA 100 28
        ahpC NONE
        ahpF  368848 ..  368873 - -19.1  -5.66338   AAATATAATAAAAAA         GACGCGCTACC AATA GGTAGCGCGTC          TTTTTTATTAGTTAC 100 33
       nhaC1  364029 ..  364053 -  -4.4  -4.28762   AGAAGCGGAGCAAAA          TGCAAAAATT GCTCA AAGTTTTGCA          AAGAACAATCCAATA  63 389
 CT43_CH0315  361965 ..  361978 -  -6.7  -3.32844   TCCTTTAGCTTACAA               CGTCT TGAA AGACG                GTGAGTTCTTGTAAT  63 1
 CT43_CH0314  361193 ..  361234 - -15.4  -4.16016   GGATTGTTCAACAAA TCGAAAAGAGAAGAGGTC ACAGCA GACATCTCCTCTTTTCGA  GTATATAGATTATCG 100 35
 CT43_CH0309  355177 ..  355202 - -11.3  -5.73672   AAAGAATCAAAAAAA         TCACCTTACTC GTTA AAGTAAGGTGA          TTTTTTATTAAATAA 100 33
 CT43_CH0307  353965 ..  353991 - -12.3  -4.36262   ATATTGACATTAAAA         TCCCCACCGCT ATAAG AGTGGTGGGGA         TATACCCTTGTTCAT 100 100
 CT43_CH0306  352806 ..  352831 -  -6.2  -5.08367   AATATAAAGTAAAAA         GAGAGCTCAA AATGTA TTGAGCTCTT          ACATTTACTTAATTG  82 30
        ampS  351443 ..  351478 -   -13  -4.62772   TTGAAACCAAATAAA    TAAA-AAACACATTGGA TTA TCCAATGTGTTTCTTTA    TGGTAATTAATTTAA 100 37
 CT43_CH0293  339329 ..  339364 - -11.5  -2.94032   AGTGTCGAAGTAAAT    GATTGAATAAAAACCC AGATA GGGTTTT-ATTCAATC    GGAATGTTTTTCATT  86 16
 CT43_CH0292 NONE
 CT43_CH0291  337876 ..  337906 - -11.3  -4.18934   CATCACTCCAATAAA       GTATAGAAAGCCT AAAAA AGGCCCTCTATAC       AGATAGTTATTCAAT 100 32
 CT43_CH0287  333388 ..  333416 - -20.5  -3.02508   ATAAGAAATAGTAGA        GGAGCTCTTCACA AAA TGTGAAGAGCTCC        TTTTAAAATTGAAAC 100 256
 CT43_CH0280  323884 ..  323913 -  -7.2  -4.43397   TGGTAAAATAAAGAA       GACTTAACCGCC CACTGC AGCAGCTAAGTC        CCTTTGAGAGCATCT  79 59
 CT43_CH0279 NONE
 CT43_CH0278  322671 ..  322696 - -13.3  -4.82901   TGCTTTGTATAAAAA         CAGCCCGCTGA AAAT TCAGTGGGCTG          TTTGTTCATGCATCT 100 31
 CT43_CH0276  320350 ..  320364 -  -2.8  -4.56367   GAGTGTACAAAGAAA               TCGCAA AGA TTGAGA               GCGATGGCTTATTTT  62 172
 CT43_CH0263  306545 ..  306565 - -14.1   -4.8622   GTCGCCAAGCAAAAA            CCTAAGTCG TTT CGACTTAGG            TTTTTTTGTGTTTAT 100 43
 CT43_CH0262  300369 ..  300390 -  -5.9  -4.70879   TTGAAATGTTAAAAA           GATACCTTA TATA TGAGGTATC            TTTTTTATTTAGCAA  74 57
 CT43_CH0260  291776 ..  291801 -  -2.7  -4.05033   TTGATGGCAGAGAAA         GCATACGTTTAA ATT TTTAA-GTATGC         TTTAAGATACTTTCT  53 8
 CT43_CH0259  290898 ..  290943 -   -18  -5.24989   TTATATAGTAAAAAA TAATAAACCACACTCTACTT GTATTT AAGCAGAGCGTGGTTTATTA TTTTACTTCTTTTTC 100 23
 CT43_CH0257 NONE
 CT43_CH0256 NONE
 CT43_CH0255 NONE
 CT43_CH0254  286175 ..  286195 -  -2.7  -3.55604   CTATCGAATTAAAGA            TCATTTT AGCAAAG AAAATGA            TTGATTTTGTACATG  46 10
 CT43_CH0251  283529 ..  283545 - -10.9  -3.11178   CAAGCAATTTTAAGA              CGAGTCA GAA TGACTCG              TCTTTTTTGTATGCT  84 13
 CT43_CH0239 NONE
 CT43_CH0238  258905 ..  258948 - -16.3  -2.53903   TTTTTGAAAAACTAT CCACAATAAAACGCAGAGG AAGCGA CCTCTGCGTTTTATTATTG TTTCTTCTTTGTGAA 100 20
 CT43_CH0236  256107 ..  256144 -  -6.5  -5.65927   TACTTAAAGAAAAAA   GATGTCACA-TAGTCA AAAATCA TGACTAATGAGACATC   TTCCTTATTTAAATA  93 44
 CT43_CH0223  238878 ..  238921 -    -9  -3.03459   TAGATGTAGAAATTA TCGATGGTGC-AAGCTTTTAT ATT AAATAAGCTTTGCACCATCGT TTTTTTTTGTTAAAA  74 3
 CT43_CH0210  224702 ..  224726 -   -13  -5.64274   TCATGTATAAAAAAA          GGACTCTTTC AAATG GAAAGAGTCC          TTTTTTTATTTACTA 100 31
 CT43_CH0203  215377 ..  215421 - -10.4  -4.66953   GGAATAGGGGAAAAA TAAAAGACAAGATATCCTCAT TACG AT-AGGGTACCTTGTCTTTTA TTTTTTCTCTAATAG  95 23
 CT43_CH0202  214472 ..  214494 -  -9.2   -4.6635   AAAGGTGTAATAAAA           GAGTAGGTTT TCT ATACCTACTC           TGTTTTTTTATGAAT  90 20
 CT43_CH0200  212025 ..  212047 - -15.6  -5.35459   ATATAGGACAAAAAA           CCACCAAGCG TTC CGCTCGGTGG           TTTTGTATTAGGATT 100 33
 CT43_CH0191  203800 ..  203819 -  -6.5   -5.7946   TTTGTAAGAAAAAAA            GACATTC ATGTAA GAATGTC             TTTCACAGCATATTG 100 28
        modA  201523 ..  201535 -  -4.1  -2.87404   ATAGTAATTACGACA                GGACT GTA AATCC                ATATCTCTTAAAGAT  47 5
        modB  200814 ..  200833 -  -8.6  -4.43668   CTAAGAAATAAAGAA            GCAGCTTC GAAA AAAGCTGC             TTTAAGAGTTAGTAA  90 27
 CT43_CH0186  199637 ..  199662 - -11.9  -4.95876   AATTAGAATTAAAAA         CCCCTGAAGTA CATA TGCTTCAGGGG          TTTACTAATAGAATA 100 46
 CT43_CH0184 NONE
 CT43_CH0183  197114 ..  197132 - -10.3  -5.37593   TCTTAAACGAAAAAA             CCACTGC ATATG GCAGTGG             TTTTTCTACTAGAAG 100 34
 CT43_CH0182  195071 ..  195097 - -11.7  -3.61398   GGTGTGGGCTAATAA         TAAGTGGGGAT GAAGA ACCCCCACTTA         TTACGGTTTTACTTT  95 39
 CT43_CH0181  193019 ..  193068 - -27.1  -4.17089   GTTAAAGTTGCAAAA TAACAAAAGTAAAAAGGTATCCT TCGT AGGATACCTTTTTACTTTTGTTA TTTTGCAACTTCTGT 100 23
 CT43_CH0179  192136 ..  192165 - -16.7  -5.54079   GCAAAAATTAAAAAA       TAAAGAAGTAGGC AACC GCCTACTTCTTTA        TTTTATTTCTCTTTT 100 23
 CT43_CH0173  186192 ..  186213 - -11.7  -5.42514   GCAGAAACGAAAAAA           TAACCTTGC CTGT GCAAGGTTA            TTTTTTCTTCTTGCC 100 23
 CT43_CH0171  184944 ..  184976 - -12.3  -5.45652   AGGCTTAACAAAAAA      GAACTGATTCAAA GGGAATG TTTGAATCAGTTC      TTTTTTTCATTTCTT 100 19
 CT43_CH0165  177657 ..  177682 -  -8.3  -5.45802   GTTCCAAAATAAAAA         GCACCTCCC AAAAATAA GAGAGGTGC          CGAATAGACGAAATA 100 242
 CT43_CH0164 NONE
 CT43_CH0163 NONE
 CT43_CH0162  175077 ..  175106 - -19.5  -5.28983   TTTAAAAGATAAAAA       GAAGGCATCTCAC TCCA GTGAGATGCCTTC        TTTTTTAATCTTTCT 100 30
 CT43_CH0160  172506 ..  172533 - -11.5   -5.1417   TTATAAAATGAAAAA        GGCATATAACA ATCATA TGTTATATGCC         TTTCTATTATATGTT 100 48
 CT43_CH0159  171832 ..  171867 - -17.2  -4.04209   TTAAATTAGGATAAA    TAAGAAAAAGAGCCTA TACT CAGGCTCTTTTTCTTA     TTTATATTTTAAAAG 100 51
        pdaB  153092 ..  153122 - -17.8  -5.14563   GGTGTGATTAAAAAA       GCTCTACCACCTTT TTG AAAGGTAGTAGAGC       TTTTTATACGTGAAG 100 57
        gerD  151611 ..  151654 - -17.1  -4.27467   TAATAGCAAGATAAA GTAATAACGAGTGGACAAT TTATAC ATTGTCCACTCGTTATTAT AGTTATTATTTTTAC 100 37
 CT43_CH0073   87237 ..   87253 - -10.9  -3.06969   CAAGCGACTTTAAGA              CGAGTCA GAA TGACTCG              TCTTTTTTGTGTTTA  84 177
        abrB   40594 ..   40619 - -13.5    -5.252   CATGTCGATAAAAAA         TAAGCTTCTCA TAAT TGAGAAGCTTA          TTTTGCTGTTTCGAT 100 23
 CT43_CH0016   23707 ..   23717 -    -4   -3.0471   CACAAAACAGAATTA                 TTGT AGC ACAA                 GAGGGAAGCGAGCGG  48 80
 CT43_CH0015 NONE
 CT43_CH0014   22318 ..   22335 - -12.7  -4.44284   AATTTAATAGGAAAA             CCCGTGC ATAT GCACGGG              TTTTTTATTTTACAA 100 30
 CT43_CH0007   14213 ..   14232 - -10.8  -4.93547   CCAAGCAACTAAAAA            CACAAGTC TTTT GACTTGTG             TTTTTTTTATTTCCC 100 32
