RM11_0002	SSF52972	ITPase-like
RM11_0003	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0003	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
RM11_0004	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0005	SSF53098	Ribonuclease H-like
RM11_0006	SSF47807	5' to 3' exonuclease, C-terminal subdomain
RM11_0006	SSF53098	Ribonuclease H-like
RM11_0006	SSF56672	DNA/RNA polymerases
RM11_0006	SSF88723	PIN domain-like
RM11_0007	SSF56219	DNase I-like
RM11_0010	SSF55315	L30e-like
RM11_0010	SSF75217	alpha/beta knot
RM11_0011	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0013	SSF47729	IHF-like DNA-binding proteins
RM11_0016	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0017	SSF55804	Phoshotransferase/anion transport protein
RM11_0019	SSF102114	Radical SAM enzymes
RM11_0020	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
RM11_0020	SSF52374	Nucleotidylyl transferase
RM11_0021	SSF50447	Translation proteins
RM11_0021	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0021	SSF54980	EF-G C-terminal domain-like
RM11_0022	SSF52833	Thioredoxin-like
RM11_0023	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0023	SSF52980	Restriction endonuclease-like
RM11_0024	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0025	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0025	SSF56112	Protein kinase-like (PK-like)
RM11_0026	SSF47384	Homodimeric domain of signal transducing histidine kinase
RM11_0026	SSF55785	PYP-like sensor domain (PAS domain)
RM11_0026	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RM11_0027	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0027	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
RM11_0029	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0030	SSF53244	MurD-like peptide ligases, peptide-binding domain
RM11_0030	SSF53623	MurD-like peptide ligases, catalytic domain
RM11_0031	SSF52096	ClpP/crotonase
RM11_0032	SSF102645	CoaB-like
RM11_0032	SSF47598	Ribbon-helix-helix
RM11_0032	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
RM11_0033	SSF56112	Protein kinase-like (PK-like)
RM11_0034	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0035	SSF54211	Ribosomal protein S5 domain 2-like
RM11_0035	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RM11_0035	SSF56719	Type II DNA topoisomerase
RM11_0036	SSF53850	Periplasmic binding protein-like II
RM11_0037	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0037	SSF54211	Ribosomal protein S5 domain 2-like
RM11_0040	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0040	SSF90123	ABC transporter transmembrane region
RM11_0041	SSF54364	Translation initiation factor IF3, N-terminal domain
RM11_0041	SSF55200	Translation initiation factor IF3, C-terminal domain
RM11_0042	SSF53474	alpha/beta-Hydrolases
RM11_0044	SSF53187	Zn-dependent exopeptidases
RM11_0044	SSF55031	Bacterial exopeptidase dimerisation domain
RM11_0045	SSF102114	Radical SAM enzymes
RM11_0046	SSF52972	ITPase-like
RM11_0047	SSF46785	"Winged helix" DNA-binding domain
RM11_0047	SSF55781	GAF domain-like
RM11_0048	SSF51064	Head domain of nucleotide exchange factor GrpE
RM11_0048	SSF58014	Coiled-coil domain of nucleotide exchange factor GrpE
RM11_0049	SSF55144	LigT-like
RM11_0050	SSF55594	HPr-like
RM11_0051	SSF53062	PTS system fructose IIA component-like
RM11_0052	SSF53795	PEP carboxykinase-like
RM11_0053	SSF47384	Homodimeric domain of signal transducing histidine kinase
RM11_0053	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RM11_0054	SSF52172	CheY-like
RM11_0055	SSF54106	LysM domain
RM11_0056	SSF110087	DR1885-like metal-binding protein
RM11_0057	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
RM11_0057	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
RM11_0057	SSF53067	Actin-like ATPase domain
RM11_0058	SSF46565	Chaperone J-domain
RM11_0058	SSF49493	HSP40/DnaJ peptide-binding domain
RM11_0058	SSF57938	DnaJ/Hsp40 cysteine-rich domain
RM11_0059	SSF53633	Carbamate kinase-like
RM11_0060	SSF103481	Multidrug resistance efflux transporter EmrE
RM11_0061	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0061	SSF54980	EF-G C-terminal domain-like
RM11_0062	SSF51161	Trimeric LpxA-like enzymes
RM11_0063	SSF102405	MCP/YpsA-like
RM11_0064	SSF55120	Pseudouridine synthase
RM11_0065	SSF50486	FMT C-terminal domain-like
RM11_0065	SSF53328	Formyltransferase
RM11_0066	SSF56420	Peptide deformylase
RM11_0068	SSF53955	Lysozyme-like
RM11_0070	SSF49764	HSP20-like chaperones
RM11_0071	SSF48150	DNA-glycosylase
RM11_0072	SSF143034	L35p-like
RM11_0073	SSF74731	Ribosomal protein L20
RM11_0074	SSF46589	tRNA-binding arm
RM11_0074	SSF55681	Class II aaRS and biotin synthetases
RM11_0075	SSF46955	Putative DNA-binding domain
RM11_0075	SSF50249	Nucleic acid-binding proteins
RM11_0075	SSF54991	Anticodon-binding domain of PheRS
RM11_0075	SSF55681	Class II aaRS and biotin synthetases
RM11_0075	SSF56037	PheT/TilS domain
RM11_0076	SSF53807	"Helical backbone" metal receptor
RM11_0077	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0078	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
RM11_0079	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
RM11_0080	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
RM11_0080	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
RM11_0081	SSF48208	Six-hairpin glycosidases
RM11_0081	SSF53448	Nucleotide-diphospho-sugar transferases
RM11_0081	SSF74650	Galactose mutarotase-like
RM11_0082	SSF50249	Nucleic acid-binding proteins
RM11_0083	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0084	SSF55205	EPT/RTPC-like
RM11_0087	SSF48334	DNA repair protein MutS, domain III
RM11_0087	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0087	SSF53150	DNA repair protein MutS, domain II
RM11_0087	SSF55271	DNA repair protein MutS, domain I
RM11_0088	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0088	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
RM11_0088	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
RM11_0089	SSF54611	SecB-like
RM11_0091	SSF54427	NTF2-like
RM11_0093	SSF118352	HSP33 redox switch-like
RM11_0093	SSF64397	Hsp33 domain
RM11_0095	SSF53671	Aspartate/ornithine carbamoyltransferase
RM11_0096	SSF53383	PLP-dependent transferases
RM11_0098	SSF52833	Thioredoxin-like
RM11_0101	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0102	SSF52016	LeuD/IlvD-like
RM11_0102	SSF53732	Aconitase iron-sulfur domain
RM11_0103	SSF46992	Ribosomal protein S20
RM11_0104	SSF48295	TrpR-like
RM11_0104	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0105	SSF55979	DNA clamp
RM11_0106	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0107	SSF52304	Type II 3-dehydroquinate dehydratase
RM11_0108	SSF49503	Cupredoxins
RM11_0108	SSF81464	Cytochrome c oxidase subunit II-like, transmembrane region
RM11_0109	SSF81442	Cytochrome c oxidase subunit I-like
RM11_0110	SSF81452	Cytochrome c oxidase subunit III-like
RM11_0112	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RM11_0112	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0113	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0114	SSF53901	Thiolase-like
RM11_0115	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RM11_0116	SSF46785	"Winged helix" DNA-binding domain
RM11_0119	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0120	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0122	SSF111369	HlyD-like secretion proteins
RM11_0123	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
RM11_0123	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
RM11_0123	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
RM11_0124	SSF53697	SIS domain
RM11_0126	SSF141091	L21p-like
RM11_0127	SSF110324	Ribosomal L27 protein-like
RM11_0128	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
RM11_0128	SSF51621	Phosphoenolpyruvate/pyruvate domain
RM11_0128	SSF52009	Phosphohistidine domain
RM11_0128	SSF55594	HPr-like
RM11_0128	SSF55804	Phoshotransferase/anion transport protein
RM11_0131	SSF101967	Adhesin YadA, collagen-binding domain
RM11_0131	SSF54523	Pili subunits
RM11_0132	SSF101967	Adhesin YadA, collagen-binding domain
RM11_0132	SSF54523	Pili subunits
RM11_0133	SSF101967	Adhesin YadA, collagen-binding domain
RM11_0133	SSF54523	Pili subunits
RM11_0136	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0137	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0137	SSF82051	Obg GTP-binding protein N-terminal domain
RM11_0138	SSF53633	Carbamate kinase-like
RM11_0138	SSF88697	PUA domain-like
RM11_0139	SSF53720	ALDH-like
RM11_0140	SSF52374	Nucleotidylyl transferase
RM11_0141	SSF51261	Duplicated hybrid motif
RM11_0142	SSF50156	PDZ domain-like
RM11_0142	SSF52096	ClpP/crotonase
RM11_0143	SSF55811	Nudix
RM11_0146	SSF69786	YggU-like
RM11_0147	SSF50324	Inorganic pyrophosphatase
RM11_0148	SSF50447	Translation proteins
RM11_0148	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0148	SSF54980	EF-G C-terminal domain-like
RM11_0149	SSF158791	MgtE N-terminal domain-like
RM11_0149	SSF161093	MgtE membrane domain-like
RM11_0149	SSF54631	CBS-domain pair
RM11_0150	SSF55486	Metalloproteases ("zincins"), catalytic domain
RM11_0151	SSF55486	Metalloproteases ("zincins"), catalytic domain
RM11_0152	SSF52266	SGNH hydrolase
RM11_0153	SSF47090	PGBD-like
RM11_0153	SSF53955	Lysozyme-like
RM11_0154	SSF53448	Nucleotide-diphospho-sugar transferases
RM11_0155	SSF53697	SIS domain
RM11_0157	SSF46689	Homeodomain-like
RM11_0157	SSF52172	CheY-like
RM11_0157	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0158	SSF56024	Phospholipase D/nuclease
RM11_0159	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
RM11_0159	SSF54631	CBS-domain pair
RM11_0160	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0161	SSF52317	Class I glutamine amidotransferase-like
RM11_0161	SSF52402	Adenine nucleotide alpha hydrolases-like
RM11_0161	SSF54810	GMP synthetase C-terminal dimerisation domain
RM11_0162	SSF51695	PLC-like phosphodiesterases
RM11_0163	SSF50331	MOP-like
RM11_0163	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0164	SSF161098	MetI-like
RM11_0165	SSF161098	MetI-like
RM11_0166	SSF53850	Periplasmic binding protein-like II
RM11_0167	SSF53807	"Helical backbone" metal receptor
RM11_0168	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
RM11_0169	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0170	SSF52218	Flavoproteins
RM11_0171	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
RM11_0171	SSF51998	PFL-like glycyl radical enzymes
RM11_0172	SSF47240	Ferritin-like
RM11_0173	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0174	SSF75620	Release factor
RM11_0175	SSF46785	"Winged helix" DNA-binding domain
RM11_0176	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0176	SSF81767	Pre-protein crosslinking domain of SecA
RM11_0176	SSF81886	Helical scaffold and wing domains of SecA
RM11_0177	SSF109998	Triger factor/SurA peptide-binding domain-like
RM11_0177	SSF54534	FKBP-like
RM11_0178	SSF56266	DmpA/ArgJ-like
RM11_0179	SSF55811	Nudix
RM11_0180	SSF54001	Cysteine proteinases
RM11_0181	SSF52949	Macro domain-like
RM11_0181	SSF53187	Zn-dependent exopeptidases
RM11_0182	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0183	SSF53774	Glutaminase/Asparaginase
RM11_0184	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
RM11_0185	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0186	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0187	SSF50249	Nucleic acid-binding proteins
RM11_0187	SSF54211	Ribosomal protein S5 domain 2-like
RM11_0187	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
RM11_0187	SSF55666	Ribonuclease PH domain 2-like
RM11_0188	SSF47060	S15/NS1 RNA-binding domain
RM11_0189	SSF103473	MFS general substrate transporter
RM11_0190	SSF55120	Pseudouridine synthase
RM11_0191	SSF89919	Ribosome-binding factor A, RbfA
RM11_0192	SSF50447	Translation proteins
RM11_0192	SSF52156	Initiation factor IF2/eIF5b, domain 3
RM11_0192	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0193	SSF55315	L30e-like
RM11_0193	SSF64376	YlxR-like
RM11_0194	SSF47794	Rad51 N-terminal domain-like
RM11_0194	SSF50249	Nucleic acid-binding proteins
RM11_0194	SSF54814	Prokaryotic type KH domain (KH-domain type II)
RM11_0194	SSF69705	Transcription factor NusA, N-terminal domain
RM11_0195	SSF74942	YhbC-like, C-terminal domain
RM11_0195	SSF75420	YhbC-like, N-terminal domain
RM11_0196	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0197	SSF55973	S-adenosylmethionine synthetase
RM11_0198	SSF47413	lambda repressor-like DNA-binding domains
RM11_0199	SSF56317	Carbon-nitrogen hydrolase
RM11_0200	SSF54631	CBS-domain pair
RM11_0200	SSF56176	FAD-binding/transporter-associated domain-like
RM11_0201	SSF55486	Metalloproteases ("zincins"), catalytic domain
RM11_0202	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0203	SSF102114	Radical SAM enzymes
RM11_0204	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RM11_0205	SSF53067	Actin-like ATPase domain
RM11_0207	SSF111304	Recombination protein RecR
RM11_0208	SSF82607	YbaB-like
RM11_0209	SSF48019	post-AAA+ oligomerization domain-like
RM11_0209	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0211	SSF53448	Nucleotide-diphospho-sugar transferases
RM11_0212	SSF46626	Cytochrome c
RM11_0214	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0215	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0216	SSF69572	Activating enzymes of the ubiquitin-like proteins
RM11_0217	SSF52440	PreATP-grasp domain
RM11_0217	SSF56059	Glutathione synthetase ATP-binding domain-like
RM11_0218	SSF53850	Periplasmic binding protein-like II
RM11_0219	SSF161098	MetI-like
RM11_0220	SSF161098	MetI-like
RM11_0221	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0222	SSF109755	PhoU-like
RM11_0224	SSF144052	Thermophilic metalloprotease-like
RM11_0225	SSF46946	S13-like H2TH domain
RM11_0225	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
RM11_0225	SSF81624	N-terminal domain of MutM-like DNA repair proteins
RM11_0226	SSF53187	Zn-dependent exopeptidases
RM11_0227	SSF53098	Ribonuclease H-like
RM11_0229	SSF56925	OMPA-like
RM11_0230	SSF56925	OMPA-like
RM11_0231	SSF56925	OMPA-like
RM11_0232	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RM11_0232	SSF50677	ValRS/IleRS/LeuRS editing domain
RM11_0232	SSF52374	Nucleotidylyl transferase
RM11_0234	SSF53927	Cytidine deaminase-like
RM11_0235	SSF55120	Pseudouridine synthase
RM11_0235	SSF55174	Alpha-L RNA-binding motif
RM11_0236	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0238	SSF55961	Bet v1-like
RM11_0239	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
RM11_0240	SSF56655	Carbohydrate phosphatase
RM11_0242	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RM11_0243	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0245	SSF118116	DNA mismatch repair protein MutL
RM11_0245	SSF54211	Ribosomal protein S5 domain 2-like
RM11_0245	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RM11_0246	SSF51283	dUTPase-like
RM11_0247	SSF51395	FMN-linked oxidoreductases
RM11_0249	SSF53955	Lysozyme-like
RM11_0253	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0258	SSF53383	PLP-dependent transferases
RM11_0259	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0261	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RM11_0261	SSF88946	Sigma2 domain of RNA polymerase sigma factors
RM11_0262	SSF55120	Pseudouridine synthase
RM11_0262	SSF55174	Alpha-L RNA-binding motif
RM11_0263	SSF53720	ALDH-like
RM11_0264	SSF46785	"Winged helix" DNA-binding domain
RM11_0264	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0266	SSF47384	Homodimeric domain of signal transducing histidine kinase
RM11_0266	SSF55785	PYP-like sensor domain (PAS domain)
RM11_0266	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RM11_0267	SSF81330	Gated mechanosensitive channel
RM11_0268	SSF51395	FMN-linked oxidoreductases
RM11_0270	SSF54368	Glutamine synthetase, N-terminal domain
RM11_0270	SSF55931	Glutamine synthetase/guanido kinase
RM11_0271	SSF51905	FAD/NAD(P)-binding domain
RM11_0272	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0272	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RM11_0273	SSF100950	NagB/RpiA/CoA transferase-like
RM11_0274	SSF143975	IlvD/EDD N-terminal domain-like
RM11_0275	SSF143975	IlvD/EDD N-terminal domain-like
RM11_0275	SSF52016	LeuD/IlvD-like
RM11_0277	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0277	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
RM11_0279	SSF75217	alpha/beta knot
RM11_0279	SSF88697	PUA domain-like
RM11_0280	SSF55931	Glutamine synthetase/guanido kinase
RM11_0281	SSF118215	Proton glutamate symport protein
RM11_0282	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0283	SSF53271	PRTase-like
RM11_0284	SSF52833	Thioredoxin-like
RM11_0285	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0286	SSF53633	Carbamate kinase-like
RM11_0286	SSF55021	ACT-like
RM11_0289	SSF116726	TrkA C-terminal domain-like
RM11_0290	SSF48452	TPR-like
RM11_0291	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0293	SSF81336	F1F0 ATP synthase subunit A
RM11_0294	SSF81333	F1F0 ATP synthase subunit C
RM11_0297	SSF109604	HD-domain/PDEase-like
RM11_0298	SSF55681	Class II aaRS and biotin synthetases
RM11_0299	SSF48452	TPR-like
RM11_0300	SSF48576	Terpenoid synthases
RM11_0301	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0302	SSF52096	ClpP/crotonase
RM11_0303	SSF54211	Ribosomal protein S5 domain 2-like
RM11_0303	SSF55060	GHMP Kinase, C-terminal domain
RM11_0304	SSF50022	ISP domain
RM11_0305	SSF50022	ISP domain
RM11_0306	SSF81342	Transmembrane di-heme cytochromes
RM11_0307	SSF81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
RM11_0308	SSF46626	Cytochrome c
RM11_0309	SSF46626	Cytochrome c
RM11_0310	SSF50346	PRC-barrel domain
RM11_0311	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0311	SSF81271	TGS-like
RM11_0312	SSF141523	L,D-transpeptidase catalytic domain-like
RM11_0314	SSF53178	Peptidyl-tRNA hydrolase-like
RM11_0315	SSF50715	Ribosomal protein L25-like
RM11_0316	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0318	SSF53271	PRTase-like
RM11_0319	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
RM11_0320	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0324	SSF47384	Homodimeric domain of signal transducing histidine kinase
RM11_0324	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RM11_0325	SSF46894	C-terminal effector domain of the bipartite response regulators
RM11_0325	SSF52172	CheY-like
RM11_0326	SSF56281	Metallo-hydrolase/oxidoreductase
RM11_0328	SSF53098	Ribonuclease H-like
RM11_0329	SSF55821	YrdC/RibB
RM11_0330	SSF55103	FAD-linked oxidases, C-terminal domain
RM11_0330	SSF56176	FAD-binding/transporter-associated domain-like
RM11_0332	SSF51246	Rudiment single hybrid motif
RM11_0332	SSF52440	PreATP-grasp domain
RM11_0332	SSF56059	Glutathione synthetase ATP-binding domain-like
RM11_0334	SSF50475	FMN-binding split barrel
RM11_0335	SSF46565	Chaperone J-domain
RM11_0335	SSF49493	HSP40/DnaJ peptide-binding domain
RM11_0336	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0337	SSF103263	Chorismate synthase, AroC
RM11_0338	SSF142695	RibA-like
RM11_0338	SSF55821	YrdC/RibB
RM11_0339	SSF116842	XseB-like
RM11_0340	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RM11_0340	SSF52922	TK C-terminal domain-like
RM11_0342	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0343	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0344	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
RM11_0348	SSF56112	Protein kinase-like (PK-like)
RM11_0349	SSF53098	Ribonuclease H-like
RM11_0350	SSF143456	VC0467-like
RM11_0351	SSF141868	EAL domain-like
RM11_0351	SSF55073	Nucleotide cyclase
RM11_0351	SSF55785	PYP-like sensor domain (PAS domain)
RM11_0352	SSF63411	LuxS/MPP-like metallohydrolase
RM11_0353	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
RM11_0354	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
RM11_0356	SSF56784	HAD-like
RM11_0357	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0358	SSF48150	DNA-glycosylase
RM11_0358	SSF55811	Nudix
RM11_0360	SSF52833	Thioredoxin-like
RM11_0361	SSF51621	Phosphoenolpyruvate/pyruvate domain
RM11_0361	SSF52009	Phosphohistidine domain
RM11_0361	SSF56059	Glutathione synthetase ATP-binding domain-like
RM11_0362	SSF47090	PGBD-like
RM11_0364	SSF82649	SufE/NifU
RM11_0366	SSF50993	Peptidase/esterase 'gauge' domain
RM11_0366	SSF53474	alpha/beta-Hydrolases
RM11_0367	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
RM11_0367	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
RM11_0369	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0369	SSF90123	ABC transporter transmembrane region
RM11_0373	SSF160935	VPA0735-like
RM11_0374	SSF53955	Lysozyme-like
RM11_0374	SSF56601	beta-lactamase/transpeptidase-like
RM11_0375	SSF46894	C-terminal effector domain of the bipartite response regulators
RM11_0375	SSF52172	CheY-like
RM11_0376	SSF47384	Homodimeric domain of signal transducing histidine kinase
RM11_0376	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RM11_0377	SSF48452	TPR-like
RM11_0378	SSF82093	Heme chaperone CcmE
RM11_0381	SSF50156	PDZ domain-like
RM11_0381	SSF50494	Trypsin-like serine proteases
RM11_0382	SSF46894	C-terminal effector domain of the bipartite response regulators
RM11_0382	SSF52172	CheY-like
RM11_0383	SSF158472	HAMP domain-like
RM11_0383	SSF47384	Homodimeric domain of signal transducing histidine kinase
RM11_0383	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RM11_0384	SSF81301	Nucleotidyltransferase
RM11_0384	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
RM11_0385	SSF56925	OMPA-like
RM11_0387	SSF47384	Homodimeric domain of signal transducing histidine kinase
RM11_0387	SSF55785	PYP-like sensor domain (PAS domain)
RM11_0387	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RM11_0388	SSF55486	Metalloproteases ("zincins"), catalytic domain
RM11_0388	SSF63737	Leukotriene A4 hydrolase N-terminal domain
RM11_0389	SSF52141	Uracil-DNA glycosylase-like
RM11_0390	SSF53613	Ribokinase-like
RM11_0391	SSF51391	Thiamin phosphate synthase
RM11_0392	SSF110399	ThiG-like
RM11_0393	SSF51971	Nucleotide-binding domain
RM11_0393	SSF54373	FAD-linked reductases, C-terminal domain
RM11_0395	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0396	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
RM11_0397	SSF53807	"Helical backbone" metal receptor
RM11_0398	SSF144064	Heme iron utilization protein-like
RM11_0399	SSF56935	Porins
RM11_0400	SSF74653	TolA/TonB C-terminal domain
RM11_0401	SSF48435	Bacterial muramidases
RM11_0401	SSF53955	Lysozyme-like
RM11_0402	SSF51569	Aldolase
RM11_0403	SSF74982	Small protein B (SmpB)
RM11_0404	SSF52141	Uracil-DNA glycosylase-like
RM11_0405	SSF63562	RPB6/omega subunit-like
RM11_0406	SSF109604	HD-domain/PDEase-like
RM11_0406	SSF55021	ACT-like
RM11_0406	SSF81271	TGS-like
RM11_0406	SSF81301	Nucleotidyltransferase
RM11_0407	SSF53271	PRTase-like
RM11_0409	SSF56214	4'-phosphopantetheinyl transferase
RM11_0410	SSF51306	LexA/Signal peptidase
RM11_0411	SSF54768	dsRNA-binding domain-like
RM11_0411	SSF69065	RNase III domain-like
RM11_0412	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0412	SSF54814	Prokaryotic type KH domain (KH-domain type II)
RM11_0413	SSF50249	Nucleic acid-binding proteins
RM11_0413	SSF57863	ArfGap/RecO-like zinc finger
RM11_0414	SSF52374	Nucleotidylyl transferase
RM11_0415	SSF51621	Phosphoenolpyruvate/pyruvate domain
RM11_0416	SSF109604	HD-domain/PDEase-like
RM11_0417	SSF103025	Folate-binding domain
RM11_0418	SSF51338	Composite domain of metallo-dependent hydrolases
RM11_0418	SSF51556	Metallo-dependent hydrolases
RM11_0420	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RM11_0420	SSF52374	Nucleotidylyl transferase
RM11_0422	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0422	SSF90123	ABC transporter transmembrane region
RM11_0425	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0426	SSF53271	PRTase-like
RM11_0426	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
RM11_0429	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0429	SSF54211	Ribosomal protein S5 domain 2-like
RM11_0430	SSF48024	N-terminal domain of DnaB helicase
RM11_0430	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0431	SSF55653	Ribosomal protein L9 C-domain
RM11_0431	SSF55658	L9 N-domain-like
RM11_0433	SSF46911	Ribosomal protein S18
RM11_0434	SSF54995	Ribosomal protein S6
RM11_0435	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
RM11_0436	SSF52151	FabD/lysophospholipase-like
RM11_0436	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
RM11_0437	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0438	SSF47336	ACP-like
RM11_0439	SSF53901	Thiolase-like
RM11_0441	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0442	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0443	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
RM11_0444	SSF109998	Triger factor/SurA peptide-binding domain-like
RM11_0448	SSF102400	DNA polymerase III chi subunit
RM11_0450	SSF103473	MFS general substrate transporter
RM11_0451	SSF103515	Autotransporter
RM11_0451	SSF51126	Pectin lyase-like
RM11_0452	SSF54919	Nucleoside diphosphate kinase, NDK
RM11_0454	SSF46600	C-terminal UvrC-binding domain of UvrB
RM11_0454	SSF47781	RuvA domain 2-like
RM11_0454	SSF82771	GIY-YIG endonuclease
RM11_0455	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0456	SSF51445	(Trans)glycosidases
RM11_0461	SSF46589	tRNA-binding arm
RM11_0461	SSF55681	Class II aaRS and biotin synthetases
RM11_0462	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0463	SSF51261	Duplicated hybrid motif
RM11_0465	SSF64076	MTH938-like
RM11_0466	SSF48576	Terpenoid synthases
RM11_0467	SSF109998	Triger factor/SurA peptide-binding domain-like
RM11_0467	SSF54534	FKBP-like
RM11_0468	SSF51351	Triosephosphate isomerase (TIM)
RM11_0470	SSF52317	Class I glutamine amidotransferase-like
RM11_0470	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0471	SSF51569	Aldolase
RM11_0472	SSF51604	Enolase C-terminal domain-like
RM11_0472	SSF54826	Enolase N-terminal domain-like
RM11_0475	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RM11_0476	SSF51230	Single hybrid motif
RM11_0476	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RM11_0476	SSF52922	TK C-terminal domain-like
RM11_0477	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
RM11_0477	SSF51230	Single hybrid motif
RM11_0477	SSF52777	CoA-dependent acyltransferases
RM11_0478	SSF51905	FAD/NAD(P)-binding domain
RM11_0478	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
RM11_0479	SSF102114	Radical SAM enzymes
RM11_0480	SSF55961	Bet v1-like
RM11_0481	SSF142433	CinA-like
RM11_0482	SSF53448	Nucleotide-diphospho-sugar transferases
RM11_0482	SSF69765	IpsF-like
RM11_0483	SSF46785	"Winged helix" DNA-binding domain
RM11_0484	SSF158472	HAMP domain-like
RM11_0484	SSF47384	Homodimeric domain of signal transducing histidine kinase
RM11_0484	SSF55785	PYP-like sensor domain (PAS domain)
RM11_0484	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RM11_0485	SSF46689	Homeodomain-like
RM11_0485	SSF52172	CheY-like
RM11_0485	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0486	SSF116726	TrkA C-terminal domain-like
RM11_0486	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0487	SSF53448	Nucleotide-diphospho-sugar transferases
RM11_0488	SSF52096	ClpP/crotonase
RM11_0489	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0490	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0490	SSF54211	Ribosomal protein S5 domain 2-like
RM11_0490	SSF88697	PUA domain-like
RM11_0491	SSF47729	IHF-like DNA-binding proteins
RM11_0499	SSF52172	CheY-like
RM11_0500	SSF53474	alpha/beta-Hydrolases
RM11_0501	SSF49764	HSP20-like chaperones
RM11_0503	SSF89360	HesB-like domain
RM11_0504	SSF101386	all-alpha NTP pyrophosphatases
RM11_0505	SSF101386	all-alpha NTP pyrophosphatases
RM11_0507	SSF50129	GroES-like
RM11_0507	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0508	SSF53901	Thiolase-like
RM11_0509	SSF53901	Thiolase-like
RM11_0510	SSF47336	ACP-like
RM11_0511	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0511	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
RM11_0511	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
RM11_0512	SSF58113	Apolipoprotein A-I
RM11_0513	SSF50182	Sm-like ribonucleoproteins
RM11_0514	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0515	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0517	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0517	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RM11_0518	SSF53383	PLP-dependent transferases
RM11_0520	SSF53597	Dihydrofolate reductase-like
RM11_0520	SSF53927	Cytidine deaminase-like
RM11_0521	SSF63380	Riboflavin synthase domain-like
RM11_0522	SSF52121	Lumazine synthase
RM11_0523	SSF48013	NusB-like
RM11_0526	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
RM11_0527	SSF53901	Thiolase-like
RM11_0528	SSF47729	IHF-like DNA-binding proteins
RM11_0529	SSF46955	Putative DNA-binding domain
RM11_0530	SSF52954	Class II aaRS ABD-related
RM11_0530	SSF55186	ThrRS/AlaRS common domain
RM11_0530	SSF55681	Class II aaRS and biotin synthetases
RM11_0530	SSF81271	TGS-like
RM11_0532	SSF82649	SufE/NifU
RM11_0533	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
RM11_0535	SSF53474	alpha/beta-Hydrolases
RM11_0541	SSF56770	HydA/Nqo6-like
RM11_0542	SSF143243	Nqo5-like
RM11_0543	SSF56762	HydB/Nqo4-like
RM11_0544	SSF52833	Thioredoxin-like
RM11_0545	SSF140490	Nqo1C-terminal domain-like
RM11_0545	SSF142019	Nqo1 FMN-binding domain-like
RM11_0545	SSF142984	Nqo1 middle domain-like
RM11_0546	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
RM11_0546	SSF54292	2Fe-2S ferredoxin-like
RM11_0546	SSF54862	4Fe-4S ferredoxins
RM11_0548	SSF54862	4Fe-4S ferredoxins
RM11_0554	SSF55681	Class II aaRS and biotin synthetases
RM11_0555	SSF56281	Metallo-hydrolase/oxidoreductase
RM11_0556	SSF52954	Class II aaRS ABD-related
RM11_0556	SSF55681	Class II aaRS and biotin synthetases
RM11_0558	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0559	SSF109910	YgfY-like
RM11_0560	SSF141259	CarD-like
RM11_0560	SSF143517	TRCF domain-like
RM11_0560	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0561	SSF53850	Periplasmic binding protein-like II
RM11_0563	SSF50249	Nucleic acid-binding proteins
RM11_0564	SSF53187	Zn-dependent exopeptidases
RM11_0565	SSF53955	Lysozyme-like
RM11_0565	SSF56601	beta-lactamase/transpeptidase-like
RM11_0566	SSF75620	Release factor
RM11_0567	SSF52833	Thioredoxin-like
RM11_0568	SSF52374	Nucleotidylyl transferase
RM11_0568	SSF55174	Alpha-L RNA-binding motif
RM11_0569	SSF53474	alpha/beta-Hydrolases
RM11_0570	SSF53383	PLP-dependent transferases
RM11_0571	SSF101960	Stabilizer of iron transporter SufD
RM11_0572	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0573	SSF101960	Stabilizer of iron transporter SufD
RM11_0574	SSF53383	PLP-dependent transferases
RM11_0575	SSF117916	Fe-S cluster assembly (FSCA) domain-like
RM11_0577	SSF51905	FAD/NAD(P)-binding domain
RM11_0579	SSF56281	Metallo-hydrolase/oxidoreductase
RM11_0580	SSF51556	Metallo-dependent hydrolases
RM11_0581	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RM11_0581	SSF52374	Nucleotidylyl transferase
RM11_0582	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0583	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0584	SSF56601	beta-lactamase/transpeptidase-like
RM11_0584	SSF69189	Penicillin-binding protein associated domain
RM11_0585	SSF50685	Barwin-like endoglucanases
RM11_0587	SSF46785	"Winged helix" DNA-binding domain
RM11_0587	SSF51306	LexA/Signal peptidase
RM11_0588	SSF102114	Radical SAM enzymes
RM11_0590	SSF55174	Alpha-L RNA-binding motif
RM11_0591	SSF53681	Aspartate/glutamate racemase
RM11_0592	SSF75217	alpha/beta knot
RM11_0594	SSF55920	Creatinase/aminopeptidase
RM11_0595	SSF47781	RuvA domain 2-like
RM11_0597	SSF53474	alpha/beta-Hydrolases
RM11_0599	SSF50249	Nucleic acid-binding proteins
RM11_0600	SSF53822	Periplasmic binding protein-like I
RM11_0603	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0604	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0605	SSF75304	Amidase signature (AS) enzymes
RM11_0606	SSF141000	Glu-tRNAGln amidotransferase C subunit
RM11_0607	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
RM11_0608	SSF53671	Aspartate/ornithine carbamoyltransferase
RM11_0609	SSF51338	Composite domain of metallo-dependent hydrolases
RM11_0609	SSF51556	Metallo-dependent hydrolases
RM11_0611	SSF102405	MCP/YpsA-like
RM11_0612	SSF56712	Prokaryotic type I DNA topoisomerase
RM11_0612	SSF57783	Zinc beta-ribbon
RM11_0613	SSF50249	Nucleic acid-binding proteins
RM11_0614	SSF50199	Staphylococcal nuclease
RM11_0615	SSF52141	Uracil-DNA glycosylase-like
RM11_0616	SSF54909	Dimeric alpha+beta barrel
RM11_0617	SSF52733	Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
RM11_0618	SSF51395	FMN-linked oxidoreductases
RM11_0620	SSF51230	Single hybrid motif
RM11_0621	SSF51246	Rudiment single hybrid motif
RM11_0621	SSF52440	PreATP-grasp domain
RM11_0621	SSF56059	Glutathione synthetase ATP-binding domain-like
RM11_0625	SSF140478	LemA-like
RM11_0627	SSF55681	Class II aaRS and biotin synthetases
RM11_0628	SSF54211	Ribosomal protein S5 domain 2-like
RM11_0628	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RM11_0628	SSF56719	Type II DNA topoisomerase
RM11_0629	SSF64182	DHH phosphoesterases
RM11_0630	SSF52161	Ribosomal protein L13
RM11_0631	SSF54211	Ribosomal protein S5 domain 2-like
RM11_0632	SSF52172	CheY-like
RM11_0633	SSF103515	Autotransporter
RM11_0633	SSF51126	Pectin lyase-like
RM11_0636	SSF48557	L-aspartase-like
RM11_0638	SSF111331	NAD kinase/diacylglycerol kinase-like
RM11_0639	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0640	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
RM11_0640	SSF52374	Nucleotidylyl transferase
RM11_0641	SSF52402	Adenine nucleotide alpha hydrolases-like
RM11_0641	SSF56317	Carbon-nitrogen hydrolase
RM11_0642	SSF51569	Aldolase
RM11_0643	SSF51905	FAD/NAD(P)-binding domain
RM11_0643	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
RM11_0645	SSF100950	NagB/RpiA/CoA transferase-like
RM11_0645	SSF75445	D-ribose-5-phosphate isomerase (RpiA), lid domain
RM11_0647	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
RM11_0647	SSF52374	Nucleotidylyl transferase
RM11_0648	SSF48256	Citrate synthase
RM11_0649	SSF53850	Periplasmic binding protein-like II
RM11_0650	SSF161098	MetI-like
RM11_0651	SSF161098	MetI-like
RM11_0652	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0653	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RM11_0655	SSF51161	Trimeric LpxA-like enzymes
RM11_0656	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RM11_0657	SSF51161	Trimeric LpxA-like enzymes
RM11_0659	SSF50156	PDZ domain-like
RM11_0661	SSF55194	Ribosome recycling factor, RRF
RM11_0662	SSF53633	Carbamate kinase-like
RM11_0663	SSF46934	UBA-like
RM11_0663	SSF54713	Elongation factor Ts (EF-Ts), dimerisation domain
RM11_0664	SSF52313	Ribosomal protein S2
RM11_0666	SSF55298	YjgF-like
RM11_0667	SSF54197	HIT-like
RM11_0668	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0668	SSF81923	Double Clp-N motif
RM11_0669	SSF54736	ClpS-like
RM11_0670	SSF110997	Sporulation related repeat
RM11_0670	SSF56601	beta-lactamase/transpeptidase-like
RM11_0672	SSF143548	Serine metabolism enzymes domain
RM11_0673	SSF55469	FMN-dependent nitroreductase-like
RM11_0674	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
RM11_0675	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
RM11_0676	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain
RM11_0676	SSF54736	ClpS-like
RM11_0677	SSF160369	Ribosomal protein L10-like
RM11_0678	SSF56808	Ribosomal protein L1
RM11_0679	SSF46906	Ribosomal protein L11, C-terminal domain
RM11_0679	SSF54747	Ribosomal L11/L12e N-terminal domain
RM11_0680	SSF50104	Translation proteins SH3-like domain
RM11_0680	SSF82679	N-utilization substance G protein NusG, N-terminal domain
RM11_0683	SSF50447	Translation proteins
RM11_0683	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
RM11_0683	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0686	SSF55315	L30e-like
RM11_0686	SSF75217	alpha/beta knot
RM11_0689	SSF55931	Glutamine synthetase/guanido kinase
RM11_0689	SSF89095	GatB/YqeY motif
RM11_0690	SSF102735	Trigger factor ribosome-binding domain
RM11_0690	SSF109998	Triger factor/SurA peptide-binding domain-like
RM11_0690	SSF54534	FKBP-like
RM11_0697	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0699	SSF55326	PurM N-terminal domain-like
RM11_0699	SSF56042	PurM C-terminal domain-like
RM11_0700	SSF53328	Formyltransferase
RM11_0701	SSF47384	Homodimeric domain of signal transducing histidine kinase
RM11_0701	SSF52172	CheY-like
RM11_0701	SSF55785	PYP-like sensor domain (PAS domain)
RM11_0701	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RM11_0703	SSF109635	DnaK suppressor protein DksA, alpha-hairpin domain
RM11_0703	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
RM11_0704	SSF50475	FMN-binding split barrel
RM11_0705	SSF51366	Ribulose-phoshate binding barrel
RM11_0706	SSF48557	L-aspartase-like
RM11_0707	SSF53474	alpha/beta-Hydrolases
RM11_0708	SSF56104	SAICAR synthase-like
RM11_0709	SSF82697	PurS-like
RM11_0710	SSF52317	Class I glutamine amidotransferase-like
RM11_0711	SSF55326	PurM N-terminal domain-like
RM11_0711	SSF56042	PurM C-terminal domain-like
RM11_0712	SSF82657	BolA-like
RM11_0713	SSF52833	Thioredoxin-like
RM11_0714	SSF103473	MFS general substrate transporter
RM11_0715	SSF101904	GyrA/ParC C-terminal domain-like
RM11_0715	SSF56719	Type II DNA topoisomerase
RM11_0716	SSF50249	Nucleic acid-binding proteins
RM11_0716	SSF55261	GAD domain-like
RM11_0716	SSF55681	Class II aaRS and biotin synthetases
RM11_0717	SSF47819	HRDC-like
RM11_0717	SSF53098	Ribonuclease H-like
RM11_0718	SSF109604	HD-domain/PDEase-like
RM11_0718	SSF53067	Actin-like ATPase domain
RM11_0719	SSF140356	PPK N-terminal domain-like
RM11_0719	SSF143724	PHP14-like
RM11_0719	SSF56024	Phospholipase D/nuclease
RM11_0721	SSF51905	FAD/NAD(P)-binding domain
RM11_0721	SSF54373	FAD-linked reductases, C-terminal domain
RM11_0722	SSF89550	PHP domain-like
RM11_0723	SSF50249	Nucleic acid-binding proteins
RM11_0723	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0724	SSF53697	SIS domain
RM11_0724	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
RM11_0725	SSF51161	Trimeric LpxA-like enzymes
RM11_0725	SSF53448	Nucleotide-diphospho-sugar transferases
RM11_0728	SSF89360	HesB-like domain
RM11_0729	SSF109604	HD-domain/PDEase-like
RM11_0730	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RM11_0730	SSF52374	Nucleotidylyl transferase
RM11_0730	SSF55190	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
RM11_0733	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
RM11_0734	SSF56655	Carbohydrate phosphatase
RM11_0735	SSF55021	ACT-like
RM11_0736	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0739	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
RM11_0740	SSF103473	MFS general substrate transporter
RM11_0741	SSF51713	tRNA-guanine transglycosylase
RM11_0742	SSF51713	tRNA-guanine transglycosylase
RM11_0743	SSF51713	tRNA-guanine transglycosylase
RM11_0744	SSF50891	Cyclophilin-like
RM11_0745	SSF50891	Cyclophilin-like
RM11_0746	SSF52374	Nucleotidylyl transferase
RM11_0747	SSF101904	GyrA/ParC C-terminal domain-like
RM11_0747	SSF56719	Type II DNA topoisomerase
RM11_0748	SSF50249	Nucleic acid-binding proteins
RM11_0749	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0750	SSF54913	GlnB-like
RM11_0751	SSF54368	Glutamine synthetase, N-terminal domain
RM11_0751	SSF55931	Glutamine synthetase/guanido kinase
RM11_0753	SSF160909	ATP12-like
RM11_0754	SSF55120	Pseudouridine synthase
RM11_0754	SSF55174	Alpha-L RNA-binding motif
RM11_0755	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0755	SSF90123	ABC transporter transmembrane region
RM11_0756	SSF101353	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
RM11_0756	SSF50447	Translation proteins
RM11_0756	SSF55186	ThrRS/AlaRS common domain
RM11_0756	SSF55681	Class II aaRS and biotin synthetases
RM11_0757	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0757	SSF54752	RecA protein, C-terminal domain
RM11_0758	SSF48019	post-AAA+ oligomerization domain-like
RM11_0758	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0759	SSF50156	PDZ domain-like
RM11_0759	SSF50494	Trypsin-like serine proteases
RM11_0760	SSF64263	Prokaryotic ribosomal protein L17
RM11_0761	SSF47789	C-terminal domain of RNA polymerase alpha subunit
RM11_0761	SSF55257	RBP11-like subunits of RNA polymerase
RM11_0761	SSF56553	Insert subdomain of RNA polymerase alpha subunit
RM11_0762	SSF53137	Translational machinery components
RM11_0763	SSF46946	S13-like H2TH domain
RM11_0764	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0765	SSF103491	Preprotein translocase SecY subunit
RM11_0766	SSF52080	Ribosomal proteins L15p and L18e
RM11_0767	SSF55129	Ribosomal protein L30p/L7e
RM11_0768	SSF54211	Ribosomal protein S5 domain 2-like
RM11_0768	SSF54768	dsRNA-binding domain-like
RM11_0769	SSF53137	Translational machinery components
RM11_0770	SSF56053	Ribosomal protein L6
RM11_0771	SSF56047	Ribosomal protein S8
RM11_0772	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
RM11_0773	SSF55282	RL5-like
RM11_0774	SSF50104	Translation proteins SH3-like domain
RM11_0775	SSF50193	Ribosomal protein L14
RM11_0776	SSF54686	Ribosomal protein L16p/L10e
RM11_0777	SSF54814	Prokaryotic type KH domain (KH-domain type II)
RM11_0777	SSF54821	Ribosomal protein S3 C-terminal domain
RM11_0778	SSF54843	Ribosomal protein L22
RM11_0779	SSF54570	Ribosomal protein S19
RM11_0780	SSF50104	Translation proteins SH3-like domain
RM11_0780	SSF50249	Nucleic acid-binding proteins
RM11_0781	SSF54189	Ribosomal proteins S24e, L23 and L15e
RM11_0782	SSF52166	Ribosomal protein L4
RM11_0783	SSF50447	Translation proteins
RM11_0784	SSF54999	Ribosomal protein S10
RM11_0785	SSF50447	Translation proteins
RM11_0785	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
RM11_0785	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0786	SSF50447	Translation proteins
RM11_0786	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0786	SSF54211	Ribosomal protein S5 domain 2-like
RM11_0786	SSF54980	EF-G C-terminal domain-like
RM11_0787	SSF47973	Ribosomal protein S7
RM11_0788	SSF50249	Nucleic acid-binding proteins
RM11_0789	SSF56219	DNase I-like
RM11_0790	SSF53850	Periplasmic binding protein-like II
RM11_0791	SSF161098	MetI-like
RM11_0792	SSF161098	MetI-like
RM11_0793	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0794	SSF46589	tRNA-binding arm
RM11_0794	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RM11_0794	SSF50677	ValRS/IleRS/LeuRS editing domain
RM11_0794	SSF52374	Nucleotidylyl transferase
RM11_0796	SSF56954	Outer membrane efflux proteins (OEP)
RM11_0797	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0802	SSF56925	OMPA-like
RM11_0804	SSF50182	Sm-like ribonucleoproteins
RM11_0804	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
RM11_0804	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
RM11_0806	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
RM11_0807	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0809	SSF54631	CBS-domain pair
RM11_0809	SSF56176	FAD-binding/transporter-associated domain-like
RM11_0813	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RM11_0813	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0814	SSF63892	Pyridoxine 5'-phosphate synthase
RM11_0815	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0816	SSF52467	DHS-like NAD/FAD-binding domain
RM11_0817	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0818	SSF50156	PDZ domain-like
RM11_0818	SSF50494	Trypsin-like serine proteases
RM11_0819	SSF117892	Band 7/SPFH domain
RM11_0820	SSF117892	Band 7/SPFH domain
RM11_0821	SSF53597	Dihydrofolate reductase-like
RM11_0822	SSF55831	Thymidylate synthase/dCMP hydroxymethylase
RM11_0823	SSF103473	MFS general substrate transporter
RM11_0825	SSF158587	Jann4075-like
RM11_0826	SSF101738	SspB-like
RM11_0827	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0828	SSF52833	Thioredoxin-like
RM11_0829	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0830	SSF53092	Creatinase/prolidase N-terminal domain
RM11_0830	SSF55920	Creatinase/aminopeptidase
RM11_0831	SSF47781	RuvA domain 2-like
RM11_0831	SSF50249	Nucleic acid-binding proteins
RM11_0831	SSF52113	BRCT domain
RM11_0831	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
RM11_0832	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0833	SSF48452	TPR-like
RM11_0834	SSF54211	Ribosomal protein S5 domain 2-like
RM11_0835	SSF52490	Tubulin nucleotide-binding domain-like
RM11_0835	SSF55307	Tubulin C-terminal domain-like
RM11_0836	SSF53067	Actin-like ATPase domain
RM11_0838	SSF52440	PreATP-grasp domain
RM11_0838	SSF56059	Glutathione synthetase ATP-binding domain-like
RM11_0839	SSF56176	FAD-binding/transporter-associated domain-like
RM11_0839	SSF56194	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
RM11_0840	SSF51984	MurCD N-terminal domain
RM11_0840	SSF53244	MurD-like peptide ligases, peptide-binding domain
RM11_0840	SSF53623	MurD-like peptide ligases, catalytic domain
RM11_0841	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RM11_0843	SSF51984	MurCD N-terminal domain
RM11_0843	SSF53244	MurD-like peptide ligases, peptide-binding domain
RM11_0843	SSF53623	MurD-like peptide ligases, catalytic domain
RM11_0845	SSF53244	MurD-like peptide ligases, peptide-binding domain
RM11_0845	SSF53623	MurD-like peptide ligases, catalytic domain
RM11_0845	SSF63418	MurE/MurF N-terminal domain
RM11_0846	SSF53244	MurD-like peptide ligases, peptide-binding domain
RM11_0846	SSF53623	MurD-like peptide ligases, catalytic domain
RM11_0846	SSF63418	MurE/MurF N-terminal domain
RM11_0847	SSF56519	Penicillin binding protein dimerisation domain
RM11_0847	SSF56601	beta-lactamase/transpeptidase-like
RM11_0849	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_0849	SSF81799	Putative methyltransferase TM0872, insert domain
RM11_0850	SSF53955	Lysozyme-like
RM11_0853	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0855	SSF52499	Isochorismatase-like hydrolases
RM11_0857	SSF47413	lambda repressor-like DNA-binding domains
RM11_0860	SSF47413	lambda repressor-like DNA-binding domains
RM11_0864	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RM11_0864	SSF88946	Sigma2 domain of RNA polymerase sigma factors
RM11_0865	SSF56731	DNA primase core
RM11_0865	SSF57783	Zinc beta-ribbon
RM11_0866	SSF50182	Sm-like ribonucleoproteins
RM11_0869	SSF64288	Chorismate lyase-like
RM11_0870	SSF52021	Carbamoyl phosphate synthetase, small subunit N-terminal domain
RM11_0870	SSF52317	Class I glutamine amidotransferase-like
RM11_0871	SSF103473	MFS general substrate transporter
RM11_0872	SSF48108	Carbamoyl phosphate synthetase, large subunit connection domain
RM11_0872	SSF52335	Methylglyoxal synthase-like
RM11_0872	SSF52440	PreATP-grasp domain
RM11_0872	SSF56059	Glutathione synthetase ATP-binding domain-like
RM11_0873	SSF50249	Nucleic acid-binding proteins
RM11_0874	SSF53383	PLP-dependent transferases
RM11_0875	SSF46785	"Winged helix" DNA-binding domain
RM11_0875	SSF53850	Periplasmic binding protein-like II
RM11_0876	SSF51905	FAD/NAD(P)-binding domain
RM11_0878	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RM11_0879	SSF46557	GreA transcript cleavage protein, N-terminal domain
RM11_0879	SSF54534	FKBP-like
RM11_0880	SSF46600	C-terminal UvrC-binding domain of UvrB
RM11_0880	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0881	SSF75217	alpha/beta knot
RM11_0882	SSF81301	Nucleotidyltransferase
RM11_0882	SSF81891	Poly A polymerase C-terminal region-like
RM11_0883	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0885	SSF52317	Class I glutamine amidotransferase-like
RM11_0886	SSF52317	Class I glutamine amidotransferase-like
RM11_0887	SSF56300	Metallo-dependent phosphatases
RM11_0888	SSF160240	Cation efflux protein cytoplasmic domain-like
RM11_0888	SSF161111	Cation efflux protein transmembrane domain-like
RM11_0890	SSF52402	Adenine nucleotide alpha hydrolases-like
RM11_0891	SSF48295	TrpR-like
RM11_0893	SSF52172	CheY-like
RM11_0897	SSF53383	PLP-dependent transferases
RM11_0898	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0898	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RM11_0900	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0901	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0902	SSF161098	MetI-like
RM11_0903	SSF161098	MetI-like
RM11_0904	SSF53850	Periplasmic binding protein-like II
RM11_0905	SSF53850	Periplasmic binding protein-like II
RM11_0906	SSF48150	DNA-glycosylase
RM11_0911	SSF52402	Adenine nucleotide alpha hydrolases-like
RM11_0912	SSF52402	Adenine nucleotide alpha hydrolases-like
RM11_0912	SSF52467	DHS-like NAD/FAD-binding domain
RM11_0913	SSF51905	FAD/NAD(P)-binding domain
RM11_0913	SSF54373	FAD-linked reductases, C-terminal domain
RM11_0913	SSF54862	4Fe-4S ferredoxins
RM11_0914	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0916	SSF52980	Restriction endonuclease-like
RM11_0917	SSF53790	Tetrapyrrole methylase
RM11_0918	SSF117916	Fe-S cluster assembly (FSCA) domain-like
RM11_0918	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0919	SSF54211	Ribosomal protein S5 domain 2-like
RM11_0921	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0922	SSF47616	GST C-terminal domain-like
RM11_0922	SSF52833	Thioredoxin-like
RM11_0923	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0923	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RM11_0924	SSF53254	Phosphoglycerate mutase-like
RM11_0927	SSF56935	Porins
RM11_0928	SSF47090	PGBD-like
RM11_0928	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
RM11_0929	SSF51366	Ribulose-phoshate binding barrel
RM11_0938	SSF46785	"Winged helix" DNA-binding domain
RM11_0939	SSF111369	HlyD-like secretion proteins
RM11_0940	SSF103473	MFS general substrate transporter
RM11_0941	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RM11_0942	SSF50621	Alanine racemase C-terminal domain-like
RM11_0942	SSF51419	PLP-binding barrel
RM11_0943	SSF52821	Rhodanese/Cell cycle control phosphatase
RM11_0944	SSF51569	Aldolase
RM11_0945	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
RM11_0945	SSF63380	Riboflavin synthase domain-like
RM11_0946	SSF50621	Alanine racemase C-terminal domain-like
RM11_0946	SSF51419	PLP-binding barrel
RM11_0947	SSF53383	PLP-dependent transferases
RM11_0948	SSF51230	Single hybrid motif
RM11_0949	SSF101790	Aminomethyltransferase beta-barrel domain
RM11_0949	SSF103025	Folate-binding domain
RM11_0950	SSF88697	PUA domain-like
RM11_0951	SSF158997	Trm112p-like
RM11_0952	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0952	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RM11_0954	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RM11_0955	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_0957	SSF102215	Creatininase
RM11_0958	SSF103515	Autotransporter
RM11_0958	SSF51126	Pectin lyase-like
RM11_0959	SSF103515	Autotransporter
RM11_0959	SSF51126	Pectin lyase-like
RM11_0960	SSF53807	"Helical backbone" metal receptor
RM11_0961	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
RM11_0962	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
RM11_0963	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0965	SSF56300	Metallo-dependent phosphatases
RM11_0966	SSF103515	Autotransporter
RM11_0966	SSF51126	Pectin lyase-like
RM11_0967	SSF103515	Autotransporter
RM11_0967	SSF51126	Pectin lyase-like
RM11_0970	SSF52799	(Phosphotyrosine protein) phosphatases II
RM11_0971	SSF52374	Nucleotidylyl transferase
RM11_0971	SSF82114	Riboflavin kinase-like
RM11_0972	SSF56784	HAD-like
RM11_0973	SSF50199	Staphylococcal nuclease
RM11_0976	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0980	SSF54427	NTF2-like
RM11_0983	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0984	SSF140931	Fic-like
RM11_0986	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_0988	SSF140931	Fic-like
RM11_0994	SSF52374	Nucleotidylyl transferase
RM11_0995	SSF52402	Adenine nucleotide alpha hydrolases-like
RM11_0996	SSF110836	Hypothetical protein SAV1430
RM11_0996	SSF117916	Fe-S cluster assembly (FSCA) domain-like
RM11_0997	SSF48592	GroEL equatorial domain-like
RM11_0997	SSF52029	GroEL apical domain-like
RM11_0997	SSF54849	GroEL-intermediate domain like
RM11_0998	SSF50129	GroES-like
RM11_0999	SSF48557	L-aspartase-like
RM11_1000	SSF53738	Phosphoglucomutase, first 3 domains
RM11_1000	SSF55957	Phosphoglucomutase, C-terminal domain
RM11_1001	SSF52833	Thioredoxin-like
RM11_1002	SSF52954	Class II aaRS ABD-related
RM11_1002	SSF55681	Class II aaRS and biotin synthetases
RM11_1003	SSF51366	Ribulose-phoshate binding barrel
RM11_1012	SSF51261	Duplicated hybrid motif
RM11_1013	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RM11_1014	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RM11_1014	SSF88946	Sigma2 domain of RNA polymerase sigma factors
RM11_1016	SSF52172	CheY-like
RM11_1016	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RM11_1017	SSF55785	PYP-like sensor domain (PAS domain)
RM11_1019	SSF144020	FdhE-like
RM11_1025	SSF88874	Receptor-binding domain of short tail fibre protein gp12
RM11_1032	SSF48208	Six-hairpin glycosidases
RM11_1037	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1037	SSF81923	Double Clp-N motif
RM11_1039	SSF52972	ITPase-like
RM11_1040	SSF50249	Nucleic acid-binding proteins
RM11_1042	SSF158442	DsbB-like
RM11_1043	SSF158442	DsbB-like
RM11_1044	SSF52255	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
RM11_1045	SSF51246	Rudiment single hybrid motif
RM11_1045	SSF52440	PreATP-grasp domain
RM11_1045	SSF56059	Glutathione synthetase ATP-binding domain-like
RM11_1046	SSF48452	TPR-like
RM11_1047	SSF100950	NagB/RpiA/CoA transferase-like
RM11_1048	SSF56300	Metallo-dependent phosphatases
RM11_1050	SSF55205	EPT/RTPC-like
RM11_1051	SSF52980	Restriction endonuclease-like
RM11_1053	SSF47413	lambda repressor-like DNA-binding domains
RM11_1056	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1056	SSF56731	DNA primase core
RM11_1056	SSF57783	Zinc beta-ribbon
RM11_1063	SSF53955	Lysozyme-like
RM11_1068	SSF158442	DsbB-like
RM11_1071	SSF51283	dUTPase-like
RM11_1076	SSF53738	Phosphoglucomutase, first 3 domains
RM11_1076	SSF55957	Phosphoglucomutase, C-terminal domain
RM11_1077	SSF140990	FtsH protease domain-like
RM11_1077	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1078	SSF52402	Adenine nucleotide alpha hydrolases-like
RM11_1079	SSF103088	OmpA-like
RM11_1081	SSF75625	YebC-like
RM11_1082	SSF52964	TolB, N-terminal domain
RM11_1082	SSF69304	Tricorn protease N-terminal domain
RM11_1086	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RM11_1087	SSF46785	"Winged helix" DNA-binding domain
RM11_1087	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1088	SSF46929	DNA helicase RuvA subunit, C-terminal domain
RM11_1088	SSF47781	RuvA domain 2-like
RM11_1088	SSF50249	Nucleic acid-binding proteins
RM11_1089	SSF53098	Ribonuclease H-like
RM11_1092	SSF51391	Thiamin phosphate synthase
RM11_1094	SSF81901	HCP-like
RM11_1096	SSF50104	Translation proteins SH3-like domain
RM11_1096	SSF50249	Nucleic acid-binding proteins
RM11_1097	SSF56655	Carbohydrate phosphatase
RM11_1098	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1098	SSF90123	ABC transporter transmembrane region
RM11_1099	SSF143800	L28p-like
RM11_1100	SSF51569	Aldolase
RM11_1101	SSF53748	Phosphoglycerate kinase
RM11_1102	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_1102	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RM11_1103	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RM11_1103	SSF52922	TK C-terminal domain-like
RM11_1105	SSF102829	Cell division protein ZapA-like
RM11_1107	SSF50800	PK beta-barrel domain-like
RM11_1107	SSF51621	Phosphoenolpyruvate/pyruvate domain
RM11_1107	SSF52935	PK C-terminal domain-like
RM11_1110	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1112	SSF63862	Thiamin pyrophosphokinase, substrate-binding domain
RM11_1112	SSF63999	Thiamin pyrophosphokinase, catalytic domain
RM11_1114	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RM11_1114	SSF88946	Sigma2 domain of RNA polymerase sigma factors
RM11_1116	SSF54862	4Fe-4S ferredoxins
RM11_1117	SSF141259	CarD-like
RM11_1118	SSF57829	Zn-binding ribosomal proteins
RM11_1119	SSF48576	Terpenoid synthases
RM11_1120	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
RM11_1122	SSF111369	HlyD-like secretion proteins
RM11_1123	SSF103473	MFS general substrate transporter
RM11_1124	SSF51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain
RM11_1125	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
RM11_1125	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
RM11_1125	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1126	SSF52943	ATP synthase (F1-ATPase), gamma subunit
RM11_1127	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
RM11_1127	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
RM11_1127	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1128	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase
RM11_1129	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1130	SSF51569	Aldolase
RM11_1132	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RM11_1132	SSF50677	ValRS/IleRS/LeuRS editing domain
RM11_1132	SSF52374	Nucleotidylyl transferase
RM11_1133	SSF51419	PLP-binding barrel
RM11_1134	SSF56801	Acetyl-CoA synthetase-like
RM11_1135	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1138	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1139	SSF111369	HlyD-like secretion proteins
RM11_1140	SSF56954	Outer membrane efflux proteins (OEP)
RM11_1141	SSF56219	DNase I-like
RM11_1142	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
RM11_1143	SSF46785	"Winged helix" DNA-binding domain
RM11_1143	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1144	SSF51905	FAD/NAD(P)-binding domain
RM11_1145	SSF81273	H-NS histone-like proteins
RM11_1157	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1158	SSF101082	Typo IV secretion system protein TraC
RM11_1160	SSF101082	Typo IV secretion system protein TraC
RM11_1162	SSF54427	NTF2-like
RM11_1165	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1168	SSF46548	alpha-helical ferredoxin
RM11_1168	SSF54292	2Fe-2S ferredoxin-like
RM11_1169	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
RM11_1169	SSF51905	FAD/NAD(P)-binding domain
RM11_1169	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
RM11_1170	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
RM11_1171	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
RM11_1172	SSF50104	Translation proteins SH3-like domain
RM11_1173	SSF75217	alpha/beta knot
RM11_1174	SSF50346	PRC-barrel domain
RM11_1174	SSF50447	Translation proteins
RM11_1176	SSF56349	DNA breaking-rejoining enzymes
RM11_1177	SSF82657	BolA-like
RM11_1178	SSF46565	Chaperone J-domain
RM11_1179	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1180	SSF53300	vWA-like
RM11_1181	SSF143800	L28p-like
RM11_1183	SSF52335	Methylglyoxal synthase-like
RM11_1183	SSF53927	Cytidine deaminase-like
RM11_1185	SSF48013	NusB-like
RM11_1185	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_1188	SSF54565	Ribosomal protein S16
RM11_1189	SSF48600	Chorismate mutase II
RM11_1190	SSF47364	Domain of the SRP/SRP receptor G-proteins
RM11_1190	SSF47446	Signal peptide-binding domain
RM11_1190	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1191	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_1191	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
RM11_1193	SSF52317	Class I glutamine amidotransferase-like
RM11_1194	SSF48452	TPR-like
RM11_1196	SSF53067	Actin-like ATPase domain
RM11_1198	SSF88697	PUA domain-like
RM11_1199	SSF46894	C-terminal effector domain of the bipartite response regulators
RM11_1199	SSF52172	CheY-like
RM11_1200	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_1202	SSF50621	Alanine racemase C-terminal domain-like
RM11_1202	SSF51419	PLP-binding barrel
RM11_1204	SSF48557	L-aspartase-like
RM11_1205	SSF48557	L-aspartase-like
RM11_1206	SSF52833	Thioredoxin-like
RM11_1208	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RM11_1208	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_1209	SSF48019	post-AAA+ oligomerization domain-like
RM11_1209	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1210	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1215	SSF53613	Ribokinase-like
RM11_1216	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
RM11_1217	SSF56601	beta-lactamase/transpeptidase-like
RM11_1219	SSF141523	L,D-transpeptidase catalytic domain-like
RM11_1220	SSF52096	ClpP/crotonase
RM11_1221	SSF47823	lambda integrase-like, N-terminal domain
RM11_1221	SSF56349	DNA breaking-rejoining enzymes
RM11_1222	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1223	SSF56796	Dehydroquinate synthase-like
RM11_1224	SSF141488	YdhA-like
RM11_1225	SSF141488	YdhA-like
RM11_1233	SSF50621	Alanine racemase C-terminal domain-like
RM11_1233	SSF51419	PLP-binding barrel
RM11_1234	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_1235	SSF51905	FAD/NAD(P)-binding domain
RM11_1235	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
RM11_1236	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
RM11_1236	SSF51230	Single hybrid motif
RM11_1236	SSF52777	CoA-dependent acyltransferases
RM11_1237	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RM11_1238	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_1238	SSF52210	Succinyl-CoA synthetase domains
RM11_1239	SSF52210	Succinyl-CoA synthetase domains
RM11_1239	SSF56059	Glutathione synthetase ATP-binding domain-like
RM11_1240	SSF51735	NAD(P)-binding Rossmann-fold domains
RM11_1240	SSF56327	LDH C-terminal domain-like
RM11_1241	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1242	SSF50882	beta-Barrel protease inhibitors
RM11_1243	SSF54506	Diaminopimelate epimerase-like
RM11_1244	SSF102114	Radical SAM enzymes
RM11_1245	SSF47364	Domain of the SRP/SRP receptor G-proteins
RM11_1245	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1247	SSF56281	Metallo-hydrolase/oxidoreductase
RM11_1248	SSF110849	ParB/Sulfiredoxin
RM11_1249	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1250	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RM11_1251	SSF51905	FAD/NAD(P)-binding domain
RM11_1252	SSF116878	TrmE connector domain
RM11_1252	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1253	SSF50249	Nucleic acid-binding proteins
RM11_1253	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RM11_1253	SSF68912	Rho N-terminal domain-like