LOCUS       NC_004253               3661 bp    DNA     circular CON 23-MAY-2013
DEFINITION  Bifidobacterium longum DJO10A plasmid pDOJH10S, complete sequence.
ACCESSION   NC_004253
VERSION     NC_004253.1  GI:23307864
DBLINK      Project: 58833
            BioProject: PRJNA58833
KEYWORDS    .
SOURCE      Bifidobacterium longum DJO10A
  ORGANISM  Bifidobacterium longum DJO10A
            Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales;
            Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 3661)
  AUTHORS   Lee,J.H. and O'Sullivan,D.J.
  TITLE     Sequence analysis of two cryptic plasmids from Bifidobacterium
            longum DJO10A and construction of a shuttle cloning vector
  JOURNAL   Appl. Environ. Microbiol. 72 (1), 527-535 (2006)
   PUBMED   16391088
REFERENCE   2  (bases 1 to 3661)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAY-2007) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3661)
  AUTHORS   Lee,J.H., Halgerson,J.S. and O'Sullivan,D.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2002) Food Science and Nutrition, University of
            Minnesota, 262 FScN, 1334 Eckles Ave, St. Paul, MN 55108, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AF538869.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3661
                     /organism="Bifidobacterium longum DJO10A"
                     /mol_type="genomic DNA"
                     /strain="DJO10A"
                     /db_xref="taxon:205913"
                     /plasmid="pDOJH10S"
     gene            join(3626..3661,1..876)
                     /gene="rep"
                     /locus_tag="pDOJH10S_p1"
                     /db_xref="GeneID:1257573"
     CDS             join(3626..3661,1..876)
                     /gene="rep"
                     /locus_tag="pDOJH10S_p1"
                     /note="putative replication protein; RepA; theta
                     replicase; similar to replication protein of Rhodococcus
                     rhodochrous plasmid pRC4 encoded by GenBank Accession
                     Number AB040101"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_694604.1"
                     /db_xref="GI:23307865"
                     /db_xref="GeneID:1257573"
                     /translation="MSEICRIIVAMSTELREQWEQLYLPLRPLCTNDFIEGVYRQPRA
                     KALEGYRYIEANPKTVSDLLVVDIDDANARAMALWEHEGMLPNVIVENPRNGHAHAVW
                     ALAAPFSRTEYARRKPLALAAAVTEGLRRSCDGDKGYSGLMTKNPLHEAWNSELVTDH
                     LYGLDELREALEESGDMPPASWKRTKRRNVVGLGRNCHLFETARTWAYREVRHHWGDS
                     EGLRLAISAEAHEMNAELFPEPLAWSEVEQIAKSIHKWIVTQSRMWRDGPTVYEATFI
                     TVQSARGKKSGKARRETFELFASEEMT"
     misc_feature    70..480
                     /gene="rep"
                     /locus_tag="pDOJH10S_p1"
                     /note="Replicase family; Region: Replicase; pfam03090"
                     /db_xref="CDD:217362"
     misc_feature    511..735
                     /gene="rep"
                     /locus_tag="pDOJH10S_p1"
                     /note="Primase C terminal 1 (PriCT-1); Region: PriCT_1;
                     pfam08708"
                     /db_xref="CDD:219983"
     gene            complement(1265..2743)
                     /gene="mob"
                     /locus_tag="pDOJH10S_p2"
                     /db_xref="GeneID:1257574"
     CDS             complement(1265..2743)
                     /gene="mob"
                     /locus_tag="pDOJH10S_p2"
                     /note="putative mobilization protein; MobB; similar to
                     mobilization protein of Bifidobacterium longum pKJ36
                     encoded by GenBank Accession Number AF139129"
                     /codon_start=1
                     /transl_table=11
                     /product="Mob"
                     /protein_id="NP_694605.1"
                     /db_xref="GI:23307866"
                     /db_xref="GeneID:1257574"
                     /translation="MAIYSLNISSASSAVAALSYITSMRVRDDARGETYSGFGRRERV
                     AHVATLLPEGAPSGYADPERLFNAAQAAERGTGVAAKKIMVALPRELDEGQRVLAVER
                     FIRENLTAGGYAATYAIHLDREGRNPHAHILVANRRIDPRTGEWARLKQKTTFALDGN
                     GQRIPVIDPKTGVQKVDKRNRKQWKRVTVSENPLGTKAMLLSMRESWADVCNGLLPEG
                     VRIDHRSLEEQGIDRVPTIHEGYASREMEKRGQPSDRMAINREIGASNRDLAEGDAAV
                     DDLRAHQSELRRLLRDMADRAVQAFDRMLESIGHGVDPSDAVEAMRDRDGINLMIPRN
                     AKDSDRPVWHAWLYDRHEWAAIPSHVLREGMRTVGRVRAAIGTALHRWRDAQAARRER
                     IARSTPAQAPRLADVARQAREDAGQPAHQPRPVRKPEQQPEQQRERPVSLAAAAKEAS
                     KQLKREQQQEPEPEPALEWNPWDPADPMNLGMGGSQGYGLGL"
     misc_feature    complement(1997..2626)
                     /gene="mob"
                     /locus_tag="pDOJH10S_p2"
                     /note="MobA/MobL family; Region: MobA_MobL; pfam03389"
                     /db_xref="CDD:217529"
     gene            3103..3558
                     /locus_tag="pDOJH10S_p3"
                     /db_xref="GeneID:4271003"
     CDS             3103..3558
                     /locus_tag="pDOJH10S_p3"
                     /note="ORFI"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_694606.1"
                     /db_xref="GI:23307867"
                     /db_xref="GeneID:4271003"
                     /translation="MPKSFAQQIEDDENKIKRIREHQRMVRAKQAKQERNARTKRLVE
                     TGAIVEKAHGGAYDDEGRQTFSDGLNGIISVYDPSRGGNVDMRVIDVIDRRIPRLPRS
                     ETTTGTAAAASRTVQATAPQPAHAQPQSFTPNPQRIEHRTGAQQPDRWA"
ORIGIN      
        1 actgaacttc gtgagcagtg ggagcagctt tacctgccgc tgcgcccgct gtgcacgaac
       61 gacttcatcg agggcgtgta ccggcagccc agggcgaagg cgctggaggg ctaccggtac
      121 atcgaggcga accccaagac cgtcagcgac ctgctcgtgg tcgacatcga cgacgcgaac
      181 gcccgcgcga tggccctatg ggagcatgag gggatgctgc ccaacgtgat cgtggagaac
      241 ccgagaaacg gccacgcgca cgccgtgtgg gcgctggccg ccccgttcag tcgcaccgaa
      301 tacgcgcggc gcaagccgct cgccctggcc gcggcggtca cggaggggct gcgccgctcg
      361 tgcgacgggg acaagggata ttcggggctg atgaccaaga acccgctgca cgaggcgtgg
      421 aacagcgaac tggtcaccga tcacctgtac gggctggacg aactgcgcga ggcgctggag
      481 gagtccgggg acatgccgcc ggcctcgtgg aagcgcacga aacggcgcaa cgtggtcgga
      541 ttgggccgca actgccatct gttcgagacg gcgcgcacat gggcgtacag ggaggtgcgc
      601 caccactggg gagacagcga ggggctgcgg ctggccatct cggccgaggc gcacgaaatg
      661 aacgccgaac tgttccccga gccactggca tggtcggagg tcgagcagat cgccaagagc
      721 atccacaagt ggatcgtcac ccaaagccgc atgtggcgcg acggccccac cgtctacgag
      781 gcgacattca tcaccgtcca aagcgcccga gggaaaaagt caggcaaggc cagacgagaa
      841 acattcgaac tattcgcgag cgaggagatg acgtaatggt tattcaaacg attcgcaaga
      901 agcgtcccct gcccgcgcgg caactcgctg aaatgtatga cgttactcca cgcaccatca
      961 tgagatgggc agcacagacc cgtgctgatt ggattgatga acaggcggct ggacgcgagg
     1021 cgatccgcgc atatcacgat gatgatggac attcatggac tcaaaccgcc aagcatttcc
     1081 acctttctct gtccacggtg aaagaacgcg cataccgtgc ccgtaaggag cgtgccgccg
     1141 aggccgagga aaaagccaga aatgaggtcc acaagaacga ggtgccgctt ttcgactagg
     1201 ctggcgcttg accccggtgc ctcccgtgca attggagcgc ggcaagggcc agggtctttc
     1261 acgtctagag gccgaggccg tagccttggc tgccgcccat gccgaggttc atggggtcgg
     1321 ccgggtccca cgggttccat tcgagtgccg gctctggttc cggctcctgc tgttgctccc
     1381 gtttgagctg tttgctggcc tccttggccg ctgcggcgag gctcacgggc cgctcccgct
     1441 gctgctcggg ctgttgctcg ggcttcctga cgggacgggg ctggtgtgcc ggttgtcccg
     1501 cgtcctcgcg cgcctgacgg gccacgtcag ccaagcgggg cgcctgggcg ggcgtggaac
     1561 gggcgatccg ctcgcgtctg gcggcctgcg cgtcccgcca acgatgcagg gccgtgccga
     1621 tggcggcgcg gacgcggccc acagtgcgca ttccctcccg caggacgtgg gagggaatgg
     1681 ccgcccactc gtgccggtcg tatagccagg catgccagac gggacggtcg gaatccttgg
     1741 cgttccgggg aatcatgagg ttgatgccgt cccggtcccg catcgcctcc accgcgtcgg
     1801 acgggtccac gccgtgtccg atgctctcca gcatccggtc gaacgcttgg acggcgcggt
     1861 cggccatgtc gcgcaggagc cggcggagtt cggactggtg cgcgcgcagg tcgtccacgg
     1921 cagcgtcgcc ttcggccagg tcgcggttcg aggctccgat ctcgcggttg atggccatgc
     1981 ggtcggacgg ctggcctcgt ttctccatct cccggctggc gtagccctcg tggatggtgg
     2041 gcacgcggtc gatgccctgt tcctcaaggc tgcggtggtc gatgcgcacg ccctcgggca
     2101 gcagcccgtt gcacacgtcg gcccagctct cgcgcatgct cagcagcatg gccttggtgc
     2161 ccaaagggtt ctcgctgacg gtgacgcgct tccactgctt gcggttgcgc ttgtccacct
     2221 tctgcacgcc ggtcttcggg tcgatgaccg ggatgcgctg gccgttcccg tccagcgcga
     2281 acgtggtctt ctgcttgagc cgcgcccatt ccccggtccg agggtcgatc ctgcggttgg
     2341 cgacgaggat gtgcgcgtgc gggttcctcc cctcgcggtc caaatggatc gcgtaggtcg
     2401 ccgcgtaccc gccggcggtc aggttctcac ggatgaaccg ttccaccgcc aggacgcgct
     2461 gcccctcgtc cagctcgcgc ggcagggcca ccatgatctt cttcgcggcc acgcccgtgc
     2521 cgcgctccgc cgcctgggcg gcgttgaaca ggcgctccgg atccgcgtag ccgctgggcg
     2581 cgccctcggg caggagcgtc gccacatggg ccacgcgctc cctgcgcccg aacccggaat
     2641 aggtctcgcc cctcgcgtcg tcccgcacgc gcatcgacgt gatgtacgac aacgcggcca
     2701 cggcgctgga cgcgctggag atgttcaacg agtagatcgc cacggcgacc tccttccacg
     2761 cgtgcgggca cggggattct caaggggccg gcccgaggcc ccttgagccc gccgggaggc
     2821 gcccccggca gggcgggaat ccaaagggcg gagccctgtg gccctccccg ggcaggggcg
     2881 ggatcgtcaa gggcggagcc cttggccccc tcgggagagc gcactgacac aatgctacct
     2941 ccggtagcat taagtgcgcc ctccgccatg cggagggacg ggccgcgacc ggatatgcgg
     3001 ggaacgtcca cgacgcgtct tccgtgtcct ccgtcctgcc ttgtgccgtc gattataatc
     3061 ctcggataac ggacgatgat tgaaccgatt ggaggaaacg agatgccgaa gagcttcgcg
     3121 cagcagatcg aggacgacga gaacaagatc aagcgcatcc gggagcacca gcgcatggtc
     3181 agggccaaac aagccaaaca ggagcgcaac gcccgcacca aaaggctcgt ggagaccgga
     3241 gcgatagtgg aaaaagcgca cggcggcgcg tacgacgacg aaggacggca gacgttctcg
     3301 gatggtctga acggcatcat ctcggtctac gacccgtccc gcggcggcaa cgtggacatg
     3361 agagtcatcg acgtaatcga ccggcgcatc cccagattgc caaggtccga aaccacaaca
     3421 ggcacggcag cggcggcatc gcgaaccgtg caagccaccg caccacagcc agcccacgcc
     3481 caaccgcaaa gcttcacgcc caacccccag cgcatcgaac accggacagg agcacagcag
     3541 ccggatcggt gggcctagcc gggacggcgc agccctcgct ccgctgggct gaaatatctg
     3601 acttggttcg taacatattt ccgacatgtc ggaaatatgt cgtatcatcg ttgctatgag
     3661 t
//
