GEM_0002 PWY-5506 methanol oxidation to formaldehyde IV GEM_0064 PWY-6840 homoglutathione biosynthesis GEM_0064 PWY-7255 ergothioneine biosynthesis I (bacteria) GEM_0068 PWY-6424 GEM_0068|GEM_0068|YP_006614223.1|GeneID:13507435 GEM_0072 PWY-7158 L-phenylalanine degradation V GEM_0073 PWY-6134 L-tyrosine biosynthesis IV GEM_0073 PWY-7158 L-phenylalanine degradation V GEM_0077 PWY-3722 glycine betaine biosynthesis II (Gram-positive bacteria) GEM_0077 PWY-7494 choline degradation IV GEM_0099 PWY-7219 adenosine ribonucleotides de novo biosynthesis GEM_0101 PWY-7219 adenosine ribonucleotides de novo biosynthesis GEM_0106 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) GEM_0106 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) GEM_0108 PWY-5737 (5R)-carbapenem carboxylate biosynthesis GEM_0108 PWY-6853 ethylene biosynthesis II (microbes) GEM_0108 PWY-6922 L-Nδ-acetylornithine biosynthesis GEM_0124 PWY-7204 pyridoxal 5'-phosphate salvage II (plants) GEM_0124 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) GEM_0134 PWY-6986 alginate degradation GEM_0181 PWY-5041 S-adenosyl-L-methionine cycle II GEM_0183 PWY-2201 folate transformations I GEM_0183 PWY-3841 folate transformations II GEM_0184 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation GEM_0186 PWY-723 alkylnitronates degradation GEM_0225 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) GEM_0225 PWY-7400 L-arginine biosynthesis IV (archaebacteria) GEM_0228 PWY-5686 UMP biosynthesis GEM_0229 PWY-1281 sulfoacetaldehyde degradation I GEM_0229 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type GEM_0229 PWY-5482 pyruvate fermentation to acetate II GEM_0229 PWY-5485 pyruvate fermentation to acetate IV GEM_0229 PWY-5497 purine nucleobases degradation II (anaerobic) GEM_0229 PWY-6637 sulfolactate degradation II GEM_0229 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type GEM_0279 PWY-6840 homoglutathione biosynthesis GEM_0279 PWY-7255 ergothioneine biosynthesis I (bacteria) GEM_0286 PWY-6832 2-aminoethylphosphonate degradation II GEM_0316 PWY-6703 preQ0 biosynthesis GEM_0317 PWY-6703 preQ0 biosynthesis GEM_0326 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation GEM_0335 PWY-5344 L-homocysteine biosynthesis GEM_0345 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) GEM_0345 PWY-7400 L-arginine biosynthesis IV (archaebacteria) GEM_0357 PWY-2941 L-lysine biosynthesis II GEM_0357 PWY-5097 L-lysine biosynthesis VI GEM_0360 PWY-5041 S-adenosyl-L-methionine cycle II GEM_0360 PWY-5912 2'-deoxymugineic acid phytosiderophore biosynthesis GEM_0371 PWY-3722 glycine betaine biosynthesis II (Gram-positive bacteria) GEM_0371 PWY-7494 choline degradation IV GEM_0374 PWY-7219 adenosine ribonucleotides de novo biosynthesis GEM_0441 PWY-4081 glutathione redox reactions I GEM_0450 PWY-381 nitrate reduction II (assimilatory) GEM_0450 PWY-5675 nitrate reduction V (assimilatory) GEM_0450 PWY-6549 L-glutamine biosynthesis III GEM_0450 PWY-6963 ammonia assimilation cycle I GEM_0450 PWY-6964 ammonia assimilation cycle II GEM_0459 PWY-6749 CMP-legionaminate biosynthesis I GEM_0460 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II GEM_0462 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I GEM_0462 PWY-6148 tetrahydromethanopterin biosynthesis GEM_0462 PWY-6797 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea) GEM_0462 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) GEM_0475 PWY-723 alkylnitronates degradation GEM_0481 PWY-5074 mevalonate degradation GEM_0493 PWY-2941 L-lysine biosynthesis II GEM_0493 PWY-2942 L-lysine biosynthesis III GEM_0493 PWY-5097 L-lysine biosynthesis VI GEM_0503 PWY-7380 biotin biosynthesis from 8-amino-7-oxononanoate II GEM_0504 PWY-7380 biotin biosynthesis from 8-amino-7-oxononanoate II GEM_0505 PWY-6519 8-amino-7-oxononanoate biosynthesis I GEM_0505 PWY-6578 8-amino-7-oxononanoate biosynthesis III GEM_0505 PWY-7147 8-amino-7-oxononanoate biosynthesis II GEM_0510 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type GEM_0510 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) GEM_0510 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type GEM_0510 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type GEM_0520 PWY-2201 folate transformations I GEM_0520 PWY-3841 folate transformations II GEM_0532 PWY-3961 phosphopantothenate biosynthesis II GEM_0533 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) GEM_0533 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) GEM_0543 PWY-5265 peptidoglycan biosynthesis II (staphylococci) GEM_0543 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) GEM_0548 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) GEM_0548 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) GEM_0549 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) GEM_0549 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) GEM_0549 PWY-7382 lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast) GEM_0553 PWY-4041 γ-glutamyl cycle GEM_0553 PWY-5826 hypoglycin biosynthesis GEM_0555 PWY-1361 benzoyl-CoA degradation I (aerobic) GEM_0555 PWY-5109 2-methylbutanoate biosynthesis GEM_0555 PWY-5136 fatty acid β-oxidation II (peroxisome) GEM_0555 PWY-5138 unsaturated, even numbered fatty acid β-oxidation GEM_0555 PWY-5177 glutaryl-CoA degradation GEM_0555 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle GEM_0555 PWY-6435 4-hydroxybenzoate biosynthesis V GEM_0555 PWY-6583 pyruvate fermentation to butanol I GEM_0555 PWY-6863 pyruvate fermentation to hexanol GEM_0555 PWY-6883 pyruvate fermentation to butanol II GEM_0555 PWY-6944 androstenedione degradation GEM_0555 PWY-6945 cholesterol degradation to androstenedione I (cholesterol oxidase) GEM_0555 PWY-6946 cholesterol degradation to androstenedione II (cholesterol dehydrogenase) GEM_0555 PWY-7007 methyl ketone biosynthesis GEM_0555 PWY-7046 4-coumarate degradation (anaerobic) GEM_0555 PWY-7094 fatty acid salvage GEM_0555 PWY-7216 (R)- and (S)-3-hydroxybutanoate biosynthesis GEM_0555 PWY-735 jasmonic acid biosynthesis GEM_0555 PWY-7401 crotonate fermentation (to acetate and cyclohexane carboxylate) GEM_0582 PWY-1622 formaldehyde assimilation I (serine pathway) GEM_0582 PWY-5484 glycolysis II (from fructose 6-phosphate) GEM_0586 PWY-5667 CDP-diacylglycerol biosynthesis I GEM_0586 PWY-5981 CDP-diacylglycerol biosynthesis III GEM_0590 PWY-6519 8-amino-7-oxononanoate biosynthesis I GEM_0593 PWY-3781 aerobic respiration I (cytochrome c) GEM_0593 PWY-4521 arsenite oxidation I (respiratory) GEM_0593 PWY-6692 Fe(II) oxidation GEM_0593 PWY-7279 aerobic respiration II (cytochrome c) (yeast) GEM_0616 PWY-6906 chitin derivatives degradation GEM_0616 PWY-7077 N-acetyl-D-galactosamine degradation GEM_0616 PWY-7395 D-galactosamine and N-acetyl-D-galactosamine degradation GEM_0619 PWY-7310 D-glucosaminate degradation GEM_0620 PWY-7545 pyruvate to cytochrome bd terminal oxidase electron transfer GEM_0627 PWY-6871 3-methylbutanol biosynthesis GEM_0639 PWY-7560 methylerythritol phosphate pathway II GEM_0654 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I GEM_0654 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) GEM_0657 PWY-6605 adenine and adenosine salvage II GEM_0657 PWY-6610 adenine and adenosine salvage IV GEM_0660 PWY-2201 folate transformations I GEM_0660 PWY-5497 purine nucleobases degradation II (anaerobic) GEM_0670 PWY-5676 acetyl-CoA fermentation to butanoate II GEM_0670 PWY-5741 ethylmalonyl-CoA pathway GEM_0670 PWY-7216 (R)- and (S)-3-hydroxybutanoate biosynthesis GEM_0700 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) GEM_0704 PWY-6700 queuosine biosynthesis GEM_0706 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) GEM_0706 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) GEM_0709 PWY-5839 menaquinol-7 biosynthesis GEM_0709 PWY-5844 menaquinol-9 biosynthesis GEM_0709 PWY-5849 menaquinol-6 biosynthesis GEM_0709 PWY-5890 menaquinol-10 biosynthesis GEM_0709 PWY-5891 menaquinol-11 biosynthesis GEM_0709 PWY-5892 menaquinol-12 biosynthesis GEM_0709 PWY-5895 menaquinol-13 biosynthesis GEM_0721 PWY-1361 benzoyl-CoA degradation I (aerobic) GEM_0721 PWY-5109 2-methylbutanoate biosynthesis GEM_0721 PWY-5136 fatty acid β-oxidation II (peroxisome) GEM_0721 PWY-5138 unsaturated, even numbered fatty acid β-oxidation GEM_0721 PWY-5177 glutaryl-CoA degradation GEM_0721 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle GEM_0721 PWY-6435 4-hydroxybenzoate biosynthesis V GEM_0721 PWY-6583 pyruvate fermentation to butanol I GEM_0721 PWY-6863 pyruvate fermentation to hexanol GEM_0721 PWY-6883 pyruvate fermentation to butanol II GEM_0721 PWY-6944 androstenedione degradation GEM_0721 PWY-6945 cholesterol degradation to androstenedione I (cholesterol oxidase) GEM_0721 PWY-6946 cholesterol degradation to androstenedione II (cholesterol dehydrogenase) GEM_0721 PWY-7007 methyl ketone biosynthesis GEM_0721 PWY-7046 4-coumarate degradation (anaerobic) GEM_0721 PWY-7094 fatty acid salvage GEM_0721 PWY-7216 (R)- and (S)-3-hydroxybutanoate biosynthesis GEM_0721 PWY-735 jasmonic acid biosynthesis GEM_0721 PWY-7401 crotonate fermentation (to acetate and cyclohexane carboxylate) GEM_0725 PWY-3781 aerobic respiration I (cytochrome c) GEM_0725 PWY-4521 arsenite oxidation I (respiratory) GEM_0725 PWY-6692 Fe(II) oxidation GEM_0725 PWY-7279 aerobic respiration II (cytochrome c) (yeast) GEM_0725 PWY-7544 pyruvate to cytochrome bo oxidase electron transfer GEM_0740 PWY-5386 methylglyoxal degradation I GEM_0755 PWY-6167 flavin biosynthesis II (archaea) GEM_0755 PWY-6168 flavin biosynthesis III (fungi) GEM_0759 PWY-4261 glycerol degradation I GEM_0760 PWY-4261 glycerol degradation I GEM_0760 PWY-6118 glycerol-3-phosphate shuttle GEM_0760 PWY-6952 glycerophosphodiester degradation GEM_0764 PWY-4041 γ-glutamyl cycle GEM_0764 PWY-5826 hypoglycin biosynthesis GEM_0774 PWY-1801 formaldehyde oxidation II (glutathione-dependent) GEM_0788 PWY-5392 reductive TCA cycle II GEM_0788 PWY-5537 pyruvate fermentation to acetate V GEM_0788 PWY-5538 pyruvate fermentation to acetate VI GEM_0788 PWY-5690 TCA cycle II (plants and fungi) GEM_0788 PWY-5913 TCA cycle VI (obligate autotrophs) GEM_0788 PWY-6728 methylaspartate cycle GEM_0788 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) GEM_0788 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) GEM_0789 PWY-5392 reductive TCA cycle II GEM_0789 PWY-5537 pyruvate fermentation to acetate V GEM_0789 PWY-5538 pyruvate fermentation to acetate VI GEM_0789 PWY-5690 TCA cycle II (plants and fungi) GEM_0789 PWY-5913 TCA cycle VI (obligate autotrophs) GEM_0789 PWY-6728 methylaspartate cycle GEM_0789 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) GEM_0789 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) GEM_0802 PWY-5057 L-valine degradation II GEM_0802 PWY-5076 L-leucine degradation III GEM_0802 PWY-5078 L-isoleucine degradation II GEM_0802 PWY-5101 L-isoleucine biosynthesis II GEM_0802 PWY-5103 L-isoleucine biosynthesis III GEM_0802 PWY-5104 L-isoleucine biosynthesis IV GEM_0802 PWY-5108 L-isoleucine biosynthesis V GEM_0805 PWY-1042 glycolysis IV (plant cytosol) GEM_0805 PWY-5484 glycolysis II (from fructose 6-phosphate) GEM_0805 PWY-6886 1-butanol autotrophic biosynthesis GEM_0805 PWY-6901 superpathway of glucose and xylose degradation GEM_0805 PWY-7003 glycerol degradation to butanol GEM_0806 PWY-1042 glycolysis IV (plant cytosol) GEM_0806 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) GEM_0806 PWY-5484 glycolysis II (from fructose 6-phosphate) GEM_0806 PWY-5723 Rubisco shunt GEM_0806 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) GEM_0806 PWY-6886 1-butanol autotrophic biosynthesis GEM_0806 PWY-6901 superpathway of glucose and xylose degradation GEM_0806 PWY-7003 glycerol degradation to butanol GEM_0806 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) GEM_0806 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) GEM_0807 PWY-1042 glycolysis IV (plant cytosol) GEM_0807 PWY-1861 formaldehyde assimilation II (RuMP Cycle) GEM_0807 PWY-5484 glycolysis II (from fructose 6-phosphate) GEM_0807 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) GEM_0807 PWY-7385 1,3-propanediol biosynthesis (engineered) GEM_0808 PWY-6123 inosine-5'-phosphate biosynthesis I GEM_0808 PWY-6124 inosine-5'-phosphate biosynthesis II GEM_0808 PWY-7234 inosine-5'-phosphate biosynthesis III GEM_0809 PWY-6123 inosine-5'-phosphate biosynthesis I GEM_0809 PWY-7234 inosine-5'-phosphate biosynthesis III GEM_0814 PWY-5265 peptidoglycan biosynthesis II (staphylococci) GEM_0814 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) GEM_0828 PWY-4261 glycerol degradation I GEM_0830 PWY-1801 formaldehyde oxidation II (glutathione-dependent) GEM_0844 PWY-4261 glycerol degradation I GEM_0849 PWY-6654 phosphopantothenate biosynthesis III GEM_0852 PWY-5651 L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde GEM_0852 PWY-6309 L-tryptophan degradation XI (mammalian, via kynurenine) GEM_0853 PWY-5651 L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde GEM_0853 PWY-6309 L-tryptophan degradation XI (mammalian, via kynurenine) GEM_0861 PWY-7204 pyridoxal 5'-phosphate salvage II (plants) GEM_0861 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) GEM_0875 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) GEM_0875 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) GEM_0876 PWY-4981 L-proline biosynthesis II (from arginine) GEM_0876 PWY-4984 urea cycle GEM_0876 PWY-7400 L-arginine biosynthesis IV (archaebacteria) GEM_0882 PWY-7219 adenosine ribonucleotides de novo biosynthesis GEM_0883 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I GEM_0883 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) GEM_0887 PWY-6854 ethylene biosynthesis III (microbes) GEM_0891 PWY-6654 phosphopantothenate biosynthesis III GEM_0906 PWY-5913 TCA cycle VI (obligate autotrophs) GEM_0906 PWY-6549 L-glutamine biosynthesis III GEM_0906 PWY-6728 methylaspartate cycle GEM_0906 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) GEM_0906 PWY-7124 ethylene biosynthesis V (engineered) GEM_0906 PWY-7254 TCA cycle VII (acetate-producers) GEM_0906 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) GEM_0907 PWY-5913 TCA cycle VI (obligate autotrophs) GEM_0907 PWY-6549 L-glutamine biosynthesis III GEM_0907 PWY-6728 methylaspartate cycle GEM_0907 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) GEM_0907 PWY-7124 ethylene biosynthesis V (engineered) GEM_0907 PWY-7254 TCA cycle VII (acetate-producers) GEM_0907 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) GEM_0915 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III GEM_0915 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I GEM_0915 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II GEM_0915 PWY-7206 pyrimidine deoxyribonucleotides dephosphorylation GEM_0919 PWY-5523 5,6-dimethylbenzimidazole biosynthesis GEM_0919 PWY-6167 flavin biosynthesis II (archaea) GEM_0919 PWY-6168 flavin biosynthesis III (fungi) GEM_0920 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I GEM_0920 PWY-6613 tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate GEM_0924 PWY-5316 nicotine biosynthesis GEM_0924 PWY-7342 superpathway of nicotine biosynthesis GEM_0925 PWY-5316 nicotine biosynthesis GEM_0925 PWY-5381 pyridine nucleotide cycling (plants) GEM_0925 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde GEM_0925 PWY-7342 superpathway of nicotine biosynthesis GEM_0926 PWY-5316 nicotine biosynthesis GEM_0926 PWY-7342 superpathway of nicotine biosynthesis GEM_0931 PWY-7560 methylerythritol phosphate pathway II GEM_0953 PWY-6683 sulfate reduction III (assimilatory) GEM_0956 PWY-5278 sulfite oxidation III GEM_0956 PWY-5340 sulfate activation for sulfonation GEM_0956 PWY-6683 sulfate reduction III (assimilatory) GEM_0956 PWY-6932 selenate reduction GEM_0957 PWY-5278 sulfite oxidation III GEM_0957 PWY-5340 sulfate activation for sulfonation GEM_0957 PWY-6683 sulfate reduction III (assimilatory) GEM_0957 PWY-6932 selenate reduction GEM_0958 PWY-5194 siroheme biosynthesis GEM_0958 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) GEM_0959 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) GEM_0962 PWY-5988 wound-induced proteolysis I GEM_0962 PWY-6018 seed germination protein turnover GEM_0966 PWY-5101 L-isoleucine biosynthesis II GEM_0966 PWY-5103 L-isoleucine biosynthesis III GEM_0966 PWY-5104 L-isoleucine biosynthesis IV GEM_0966 PWY-7111 pyruvate fermentation to isobutanol (engineered) GEM_0976 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II GEM_0976 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I GEM_0976 PWY-6269 adenosylcobalamin salvage from cobinamide II GEM_0977 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II GEM_0977 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I GEM_0977 PWY-6269 adenosylcobalamin salvage from cobinamide II GEM_0978 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II GEM_0978 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I GEM_0978 PWY-6269 adenosylcobalamin salvage from cobinamide II GEM_0980 PWY-5443 aminopropanol phosphate biosynthesis I GEM_0982 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II GEM_0982 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I GEM_0982 PWY-6269 adenosylcobalamin salvage from cobinamide II GEM_0987 PWY-5155 β-alanine biosynthesis III GEM_0997 PWY-6854 ethylene biosynthesis III (microbes) GEM_0998 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II GEM_1002 PWY-4983 L-citrulline-nitric oxide cycle GEM_1002 PWY-4984 urea cycle GEM_1002 PWY-5 canavanine biosynthesis GEM_1002 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) GEM_1002 PWY-7400 L-arginine biosynthesis IV (archaebacteria) GEM_1005 PWY-1622 formaldehyde assimilation I (serine pathway) GEM_1005 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type GEM_1005 PWY-5913 TCA cycle VI (obligate autotrophs) GEM_1005 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) GEM_1005 PWY-6146 Methanobacterium thermoautotrophicum biosynthetic metabolism GEM_1005 PWY-6549 L-glutamine biosynthesis III GEM_1005 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type GEM_1005 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type GEM_1005 PWY-7124 ethylene biosynthesis V (engineered) GEM_1006 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) GEM_1006 PWY-5189 tetrapyrrole biosynthesis II (from glycine) GEM_1007 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) GEM_1007 PWY-5189 tetrapyrrole biosynthesis II (from glycine) GEM_1062 PWY-5755 4-hydroxybenzoate biosynthesis II (microbes) GEM_1062 PWY-5870 ubiquinol-8 biosynthesis (eukaryotic) GEM_1062 PWY-6148 tetrahydromethanopterin biosynthesis GEM_1071 PWY-1861 formaldehyde assimilation II (RuMP Cycle) GEM_1071 PWY-5723 Rubisco shunt GEM_1113 PWY-5381 pyridine nucleotide cycling (plants) GEM_1113 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde GEM_1114 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) GEM_1114 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) GEM_1115 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I GEM_1115 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II GEM_1115 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis GEM_1117 PWY-7183 pyrimidine nucleobases salvage I GEM_1139 PWY-7039 phosphatidate metabolism, as a signaling molecule GEM_1146 PWY-5101 L-isoleucine biosynthesis II GEM_1146 PWY-5103 L-isoleucine biosynthesis III GEM_1146 PWY-5104 L-isoleucine biosynthesis IV GEM_1146 PWY-5938 (R)-acetoin biosynthesis I GEM_1146 PWY-5939 (R)-acetoin biosynthesis II GEM_1146 PWY-6389 (S)-acetoin biosynthesis GEM_1146 PWY-7111 pyruvate fermentation to isobutanol (engineered) GEM_1147 PWY-5101 L-isoleucine biosynthesis II GEM_1147 PWY-5103 L-isoleucine biosynthesis III GEM_1147 PWY-5104 L-isoleucine biosynthesis IV GEM_1147 PWY-5938 (R)-acetoin biosynthesis I GEM_1147 PWY-5939 (R)-acetoin biosynthesis II GEM_1147 PWY-6389 (S)-acetoin biosynthesis GEM_1147 PWY-7111 pyruvate fermentation to isobutanol (engineered) GEM_1148 PWY-5101 L-isoleucine biosynthesis II GEM_1148 PWY-5103 L-isoleucine biosynthesis III GEM_1148 PWY-5104 L-isoleucine biosynthesis IV GEM_1148 PWY-7111 pyruvate fermentation to isobutanol (engineered) GEM_1149 PWY-5669 phosphatidylethanolamine biosynthesis I GEM_1150 PWY-5669 phosphatidylethanolamine biosynthesis I GEM_1151 PWY-6871 3-methylbutanol biosynthesis GEM_1153 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type GEM_1153 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) GEM_1153 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type GEM_1153 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type GEM_1159 PWY-1042 glycolysis IV (plant cytosol) GEM_1159 PWY-5484 glycolysis II (from fructose 6-phosphate) GEM_1159 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) GEM_1159 PWY-7003 glycerol degradation to butanol GEM_1205 PWY-5913 TCA cycle VI (obligate autotrophs) GEM_1205 PWY-6318 L-phenylalanine degradation IV (mammalian, via side chain) GEM_1205 PWY-6638 sulfolactate degradation III GEM_1205 PWY-6642 (R)-cysteate degradation GEM_1205 PWY-6643 coenzyme M biosynthesis II GEM_1205 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type GEM_1205 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type GEM_1205 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) GEM_1219 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) GEM_1219 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) GEM_1221 PWY-5392 reductive TCA cycle II GEM_1221 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation GEM_1221 PWY-5690 TCA cycle II (plants and fungi) GEM_1221 PWY-5913 TCA cycle VI (obligate autotrophs) GEM_1221 PWY-6728 methylaspartate cycle GEM_1221 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) GEM_1221 PWY-7254 TCA cycle VII (acetate-producers) GEM_1221 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) GEM_1224 PWY-6672 cis-genanyl-CoA degradation GEM_1224 PWY-7118 chitin degradation to ethanol GEM_1235 PWY-5278 sulfite oxidation III GEM_1235 PWY-5340 sulfate activation for sulfonation GEM_1235 PWY-6683 sulfate reduction III (assimilatory) GEM_1235 PWY-6932 selenate reduction GEM_1236 PWY-5278 sulfite oxidation III GEM_1236 PWY-5340 sulfate activation for sulfonation GEM_1236 PWY-6683 sulfate reduction III (assimilatory) GEM_1236 PWY-6932 selenate reduction GEM_1248 PWY-6012 acyl carrier protein metabolism I GEM_1248 PWY-6012-1 acyl carrier protein metabolism II (mammalian) GEM_1250 PWY-5028 L-histidine degradation II GEM_1250 PWY-5030 L-histidine degradation III GEM_1252 PWY-5028 L-histidine degradation II GEM_1252 PWY-5030 L-histidine degradation III GEM_1254 PWY-5028 L-histidine degradation II GEM_1254 PWY-5030 L-histidine degradation III GEM_1258 PWY-381 nitrate reduction II (assimilatory) GEM_1258 PWY-5675 nitrate reduction V (assimilatory) GEM_1258 PWY-6549 L-glutamine biosynthesis III GEM_1258 PWY-6963 ammonia assimilation cycle I GEM_1258 PWY-6964 ammonia assimilation cycle II GEM_1262 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) GEM_1262 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) GEM_1265 PWY-5913 TCA cycle VI (obligate autotrophs) GEM_1265 PWY-6318 L-phenylalanine degradation IV (mammalian, via side chain) GEM_1265 PWY-6638 sulfolactate degradation III GEM_1265 PWY-6642 (R)-cysteate degradation GEM_1265 PWY-6643 coenzyme M biosynthesis II GEM_1265 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type GEM_1265 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type GEM_1265 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) GEM_1272 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) GEM_1279 PWY-381 nitrate reduction II (assimilatory) GEM_1279 PWY-5675 nitrate reduction V (assimilatory) GEM_1279 PWY-6549 L-glutamine biosynthesis III GEM_1279 PWY-6963 ammonia assimilation cycle I GEM_1279 PWY-6964 ammonia assimilation cycle II GEM_1285 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) GEM_1285 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) GEM_1288 PWY-1722 formate reduction to 5,10-methylenetetrahydrofolate GEM_1288 PWY-2201 folate transformations I GEM_1288 PWY-3841 folate transformations II GEM_1288 PWY-5030 L-histidine degradation III GEM_1288 PWY-5497 purine nucleobases degradation II (anaerobic) GEM_1288 PWY-6613 tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate GEM_1291 PWY-6891 thiazole biosynthesis II (Bacillus) GEM_1291 PWY-6892 thiazole biosynthesis I (E. coli) GEM_1291 PWY-7560 methylerythritol phosphate pathway II GEM_1293 PWY-5046 2-oxoisovalerate decarboxylation to isobutanoyl-CoA GEM_1293 PWY-5084 2-oxoglutarate decarboxylation to succinyl-CoA GEM_1302 PWY-6823 molybdenum cofactor biosynthesis GEM_1302 PWY-6891 thiazole biosynthesis II (Bacillus) GEM_1302 PWY-6892 thiazole biosynthesis I (E. coli) GEM_1302 PWY-7250 [2Fe-2S] iron-sulfur cluster biosynthesis GEM_1319 PWY-7176 UTP and CTP de novo biosynthesis GEM_1319 PWY-7177 UTP and CTP dephosphorylation II GEM_1319 PWY-7185 UTP and CTP dephosphorylation I GEM_1320 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I GEM_1320 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) GEM_1321 PWY-1042 glycolysis IV (plant cytosol) GEM_1321 PWY-1622 formaldehyde assimilation I (serine pathway) GEM_1321 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) GEM_1321 PWY-5484 glycolysis II (from fructose 6-phosphate) GEM_1321 PWY-5723 Rubisco shunt GEM_1321 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) GEM_1321 PWY-6886 1-butanol autotrophic biosynthesis GEM_1321 PWY-6901 superpathway of glucose and xylose degradation GEM_1321 PWY-7003 glycerol degradation to butanol GEM_1321 PWY-7124 ethylene biosynthesis V (engineered) GEM_1321 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) GEM_1333 PWY-2941 L-lysine biosynthesis II GEM_1333 PWY-2942 L-lysine biosynthesis III GEM_1333 PWY-5097 L-lysine biosynthesis VI GEM_1344 PWY-2301 myo-inositol biosynthesis GEM_1344 PWY-4702 phytate degradation I GEM_1344 PWY-6363 D-myo-inositol (1,4,5)-trisphosphate degradation GEM_1346 PWY-6936 seleno-amino acid biosynthesis GEM_1346 PWY-7274 D-cycloserine biosynthesis GEM_1353 PWY-4381 fatty acid biosynthesis initiation I GEM_1353 PWY-5743 3-hydroxypropanoate cycle GEM_1353 PWY-5744 glyoxylate assimilation GEM_1353 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle GEM_1353 PWY-6679 jadomycin biosynthesis GEM_1353 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) GEM_1355 PWY-2941 L-lysine biosynthesis II GEM_1355 PWY-2942 L-lysine biosynthesis III GEM_1355 PWY-5097 L-lysine biosynthesis VI GEM_1355 PWY-6559 spermidine biosynthesis II GEM_1355 PWY-6562 norspermidine biosynthesis GEM_1355 PWY-7153 grixazone biosynthesis GEM_1360 PWY-3781 aerobic respiration I (cytochrome c) GEM_1360 PWY-4521 arsenite oxidation I (respiratory) GEM_1360 PWY-6692 Fe(II) oxidation GEM_1360 PWY-7279 aerobic respiration II (cytochrome c) (yeast) GEM_1360 PWY-7544 pyruvate to cytochrome bo oxidase electron transfer GEM_1378 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) GEM_1389 PWY-6728 methylaspartate cycle GEM_1389 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) GEM_1389 PWY-7118 chitin degradation to ethanol GEM_1389 PWY-7294 xylose degradation IV GEM_1389 PWY-7295 L-arabinose degradation IV GEM_1390 PWY-7425 2-chloroacrylate degradation I GEM_1393 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) GEM_1400 PWY-6910 hydroxymethylpyrimidine salvage GEM_1400 PWY-7356 thiamin salvage IV (yeast) GEM_1400 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast) GEM_1402 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) GEM_1427 PWY-7560 methylerythritol phosphate pathway II GEM_1432 PWY-5971 palmitate biosynthesis II (bacteria and plants) GEM_1432 PWY-5973 cis-vaccenate biosynthesis GEM_1432 PWY-5989 stearate biosynthesis II (bacteria and plants) GEM_1432 PWY-5994 palmitate biosynthesis I (animals and fungi) GEM_1432 PWY-6113 superpathway of mycolate biosynthesis GEM_1432 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) GEM_1432 PWY-6519 8-amino-7-oxononanoate biosynthesis I GEM_1432 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) GEM_1432 PWYG-321 mycolate biosynthesis GEM_1438 PWY-5484 glycolysis II (from fructose 6-phosphate) GEM_1449 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation GEM_1449 PWY-6596 adenosine nucleotides degradation I GEM_1449 PWY-7221 guanosine ribonucleotides de novo biosynthesis GEM_1451 PWY-7221 guanosine ribonucleotides de novo biosynthesis GEM_1460 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) GEM_1460 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) GEM_1462 PWY-5691 urate degradation to allantoin I GEM_1462 PWY-7394 urate degradation to allantoin II GEM_1463 PWY-5697 allantoin degradation to ureidoglycolate I (urea producing) GEM_1464 PWY-5694 allantoin degradation to glyoxylate I GEM_1464 PWY-5705 allantoin degradation to glyoxylate III GEM_1467 PWY-5691 urate degradation to allantoin I GEM_1467 PWY-7394 urate degradation to allantoin II GEM_1479 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) GEM_1481 PWY-7560 methylerythritol phosphate pathway II GEM_1482 PWY-7560 methylerythritol phosphate pathway II GEM_1498 PWY-6654 phosphopantothenate biosynthesis III GEM_1510 PWY-3801 sucrose degradation II (sucrose synthase) GEM_1510 PWY-5054 sorbitol biosynthesis I GEM_1510 PWY-5384 sucrose degradation IV (sucrose phosphorylase) GEM_1510 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II GEM_1510 PWY-5659 GDP-mannose biosynthesis GEM_1510 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) GEM_1510 PWY-621 sucrose degradation III (sucrose invertase) GEM_1510 PWY-622 starch biosynthesis GEM_1510 PWY-6531 mannitol cycle GEM_1510 PWY-6981 chitin biosynthesis GEM_1510 PWY-7238 sucrose biosynthesis II GEM_1510 PWY-7347 sucrose biosynthesis III GEM_1510 PWY-7385 1,3-propanediol biosynthesis (engineered) GEM_1511 PWY-6938 NADH repair GEM_1513 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I GEM_1513 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II GEM_1513 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis GEM_1521 PWY-1361 benzoyl-CoA degradation I (aerobic) GEM_1521 PWY-5109 2-methylbutanoate biosynthesis GEM_1521 PWY-5136 fatty acid β-oxidation II (peroxisome) GEM_1521 PWY-5138 unsaturated, even numbered fatty acid β-oxidation GEM_1521 PWY-5177 glutaryl-CoA degradation GEM_1521 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle GEM_1521 PWY-6435 4-hydroxybenzoate biosynthesis V GEM_1521 PWY-6583 pyruvate fermentation to butanol I GEM_1521 PWY-6863 pyruvate fermentation to hexanol GEM_1521 PWY-6883 pyruvate fermentation to butanol II GEM_1521 PWY-6944 androstenedione degradation GEM_1521 PWY-6945 cholesterol degradation to androstenedione I (cholesterol oxidase) GEM_1521 PWY-6946 cholesterol degradation to androstenedione II (cholesterol dehydrogenase) GEM_1521 PWY-7007 methyl ketone biosynthesis GEM_1521 PWY-7046 4-coumarate degradation (anaerobic) GEM_1521 PWY-7094 fatty acid salvage GEM_1521 PWY-7216 (R)- and (S)-3-hydroxybutanoate biosynthesis GEM_1521 PWY-735 jasmonic acid biosynthesis GEM_1521 PWY-7401 crotonate fermentation (to acetate and cyclohexane carboxylate) GEM_1532 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III GEM_1532 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I GEM_1532 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II GEM_1532 PWY-7197 pyrimidine deoxyribonucleotide phosphorylation GEM_1532 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV GEM_1532 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP GEM_1572 PWY-6823 molybdenum cofactor biosynthesis GEM_1574 PWY-6823 molybdenum cofactor biosynthesis GEM_1583 PWY-5083 NAD/NADH phosphorylation and dephosphorylation GEM_1583 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) GEM_1583 PWY-7269 NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast) GEM_1588 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) GEM_1588 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) GEM_1588 PWY-7382 lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast) GEM_1595 PWY-7219 adenosine ribonucleotides de novo biosynthesis GEM_1603 PWY-5381 pyridine nucleotide cycling (plants) GEM_1603 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation GEM_1603 PWY-6596 adenosine nucleotides degradation I GEM_1603 PWY-6606 guanosine nucleotides degradation II GEM_1603 PWY-6607 guanosine nucleotides degradation I GEM_1603 PWY-6608 guanosine nucleotides degradation III GEM_1603 PWY-7185 UTP and CTP dephosphorylation I GEM_1611 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III GEM_1611 PWY-7176 UTP and CTP de novo biosynthesis GEM_1611 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I GEM_1611 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II GEM_1611 PWY-7197 pyrimidine deoxyribonucleotide phosphorylation GEM_1611 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV GEM_1611 PWY-7205 CMP phosphorylation GEM_1611 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP GEM_1611 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II GEM_1611 PWY-7221 guanosine ribonucleotides de novo biosynthesis GEM_1611 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II GEM_1611 PWY-7224 purine deoxyribonucleosides salvage GEM_1611 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I GEM_1611 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis GEM_1614 PWY-7560 methylerythritol phosphate pathway II GEM_1625 PWY-7219 adenosine ribonucleotides de novo biosynthesis GEM_1637 PWY-5676 acetyl-CoA fermentation to butanoate II GEM_1637 PWY-5741 ethylmalonyl-CoA pathway GEM_1637 PWY-7216 (R)- and (S)-3-hydroxybutanoate biosynthesis GEM_1643 PWY-6936 seleno-amino acid biosynthesis GEM_1659 PWY-723 alkylnitronates degradation GEM_1691 PWY-7545 pyruvate to cytochrome bd terminal oxidase electron transfer GEM_1708 PWY-1801 formaldehyde oxidation II (glutathione-dependent) GEM_1709 PWY-723 alkylnitronates degradation GEM_1738 PWY-5194 siroheme biosynthesis GEM_1738 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) GEM_1740 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) GEM_1741 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) GEM_1742 PWY-6683 sulfate reduction III (assimilatory) GEM_1745 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) GEM_1760 PWY-5194 siroheme biosynthesis GEM_1760 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) GEM_1762 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II GEM_1762 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I GEM_1762 PWY-6268 adenosylcobalamin salvage from cobalamin GEM_1762 PWY-6269 adenosylcobalamin salvage from cobinamide II GEM_1800 PWY-43 putrescine biosynthesis II GEM_1801 PWY-43 putrescine biosynthesis II GEM_1803 PWY-43 putrescine biosynthesis II GEM_1804 PWY-43 putrescine biosynthesis II GEM_1876 PWY-5686 UMP biosynthesis GEM_1881 PWY-1861 formaldehyde assimilation II (RuMP Cycle) GEM_1881 PWY-5723 Rubisco shunt GEM_1923 PWY-5046 2-oxoisovalerate decarboxylation to isobutanoyl-CoA GEM_1923 PWY-5084 2-oxoglutarate decarboxylation to succinyl-CoA GEM_1924 PWY-5084 2-oxoglutarate decarboxylation to succinyl-CoA GEM_1925 PWY-5084 2-oxoglutarate decarboxylation to succinyl-CoA GEM_1972 PWY-6163 chorismate biosynthesis from 3-dehydroquinate GEM_1977 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) GEM_1977 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) GEM_1977 PWY-6785 hydrogen production VIII GEM_1987 PWY-6151 S-adenosyl-L-methionine cycle I GEM_1987 PWY-6153 autoinducer AI-2 biosynthesis I GEM_1987 PWY-6154 autoinducer AI-2 biosynthesis II (Vibrio) GEM_1990 PWY-3801 sucrose degradation II (sucrose synthase) GEM_1990 PWY-6527 stachyose degradation GEM_1990 PWY-6981 chitin biosynthesis GEM_1990 PWY-7238 sucrose biosynthesis II GEM_1990 PWY-7343 UDP-glucose biosynthesis GEM_1998 PWY-5642 2,4-dinitrotoluene degradation GEM_1998 PWY-6373 acrylate degradation GEM_2002 PWY-5940 streptomycin biosynthesis GEM_2002 PWY-7237 myo-, chiro- and scillo-inositol degradation GEM_2002 PWY-7241 myo-inositol degradation II GEM_2010 PWY-6507 4-deoxy-L-threo-hex-4-enopyranuronate degradation GEM_2025 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) GEM_2044 PWY-1001 cellulose biosynthesis GEM_2049 PWY-6788 cellulose degradation II (fungi) GEM_2155 PWY-6749 CMP-legionaminate biosynthesis I GEM_2156 PWY-6614 tetrahydrofolate biosynthesis GEM_2162 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) GEM_2162 PWY-5686 UMP biosynthesis GEM_2162 PWY-7400 L-arginine biosynthesis IV (archaebacteria) GEM_2164 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) GEM_2164 PWY-5686 UMP biosynthesis GEM_2164 PWY-7400 L-arginine biosynthesis IV (archaebacteria) GEM_2167 PWY-5386 methylglyoxal degradation I GEM_2181 PWY-5796 malonate decarboxylase activation GEM_2182 PWY-5796 malonate decarboxylase activation GEM_2183 PWY-6060 malonate degradation II (biotin-dependent) GEM_2184 PWY-4381 fatty acid biosynthesis initiation I GEM_2184 PWY-5743 3-hydroxypropanoate cycle GEM_2184 PWY-5744 glyoxylate assimilation GEM_2184 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle GEM_2184 PWY-6060 malonate degradation II (biotin-dependent) GEM_2184 PWY-6679 jadomycin biosynthesis GEM_2184 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) GEM_2186 PWY-5794 malonate degradation I (biotin-independent) GEM_2186 PWY-6060 malonate degradation II (biotin-dependent) GEM_2191 PWY-1361 benzoyl-CoA degradation I (aerobic) GEM_2191 PWY-5109 2-methylbutanoate biosynthesis GEM_2191 PWY-5136 fatty acid β-oxidation II (peroxisome) GEM_2191 PWY-5138 unsaturated, even numbered fatty acid β-oxidation GEM_2191 PWY-5177 glutaryl-CoA degradation GEM_2191 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle GEM_2191 PWY-6435 4-hydroxybenzoate biosynthesis V GEM_2191 PWY-6583 pyruvate fermentation to butanol I GEM_2191 PWY-6863 pyruvate fermentation to hexanol GEM_2191 PWY-6883 pyruvate fermentation to butanol II GEM_2191 PWY-6944 androstenedione degradation GEM_2191 PWY-6945 cholesterol degradation to androstenedione I (cholesterol oxidase) GEM_2191 PWY-6946 cholesterol degradation to androstenedione II (cholesterol dehydrogenase) GEM_2191 PWY-7007 methyl ketone biosynthesis GEM_2191 PWY-7046 4-coumarate degradation (anaerobic) GEM_2191 PWY-7094 fatty acid salvage GEM_2191 PWY-7216 (R)- and (S)-3-hydroxybutanoate biosynthesis GEM_2191 PWY-735 jasmonic acid biosynthesis GEM_2191 PWY-7401 crotonate fermentation (to acetate and cyclohexane carboxylate) GEM_2209 PWY-40 putrescine biosynthesis I GEM_2209 PWY-6305 putrescine biosynthesis IV GEM_2214 PWY-5046 2-oxoisovalerate decarboxylation to isobutanoyl-CoA GEM_2214 PWY-5084 2-oxoglutarate decarboxylation to succinyl-CoA GEM_2217 PWY-5046 2-oxoisovalerate decarboxylation to isobutanoyl-CoA GEM_2221 PWY-7165 L-ascorbate biosynthesis VI (engineered pathway) GEM_2237 PWY-5651 L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde GEM_2237 PWY-6309 L-tryptophan degradation XI (mammalian, via kynurenine) GEM_2251 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) GEM_2251 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) GEM_2268 PWY-6890 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis GEM_2343 PWY-5129 sphingolipid biosynthesis (plants) GEM_2346 PWY-7204 pyridoxal 5'-phosphate salvage II (plants) GEM_2346 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) GEM_2350 PWY-6499 D-glucarate degradation II GEM_2375 PWY-5269 cardiolipin biosynthesis II GEM_2375 PWY-5668 cardiolipin biosynthesis I GEM_2381 PWY-6012 acyl carrier protein metabolism I GEM_2381 PWY-6012-1 acyl carrier protein metabolism II (mammalian) GEM_2396 PWY-5367 petroselinate biosynthesis GEM_2396 PWY-5971 palmitate biosynthesis II (bacteria and plants) GEM_2396 PWY-5973 cis-vaccenate biosynthesis GEM_2396 PWY-5989 stearate biosynthesis II (bacteria and plants) GEM_2396 PWY-5994 palmitate biosynthesis I (animals and fungi) GEM_2396 PWY-6113 superpathway of mycolate biosynthesis GEM_2396 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) GEM_2396 PWY-6519 8-amino-7-oxononanoate biosynthesis I GEM_2396 PWY-6951 GEM_2396|GEM_2396|YP_006616499.1|GeneID:13508717 GEM_2396 PWY-7053 docosahexaenoate biosynthesis I (lower eukaryotes) GEM_2396 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) GEM_2396 PWYG-321 mycolate biosynthesis GEM_2397 PWY-4381 fatty acid biosynthesis initiation I GEM_2397 PWY-6799 fatty acid biosynthesis (plant mitochondria) GEM_2397 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) GEM_2398 PWY-4381 fatty acid biosynthesis initiation I GEM_2409 PWY-6823 molybdenum cofactor biosynthesis GEM_2410 PWY-5964 guanylyl molybdenum cofactor biosynthesis GEM_2411 PWY-6823 molybdenum cofactor biosynthesis GEM_2418 PWY-5381 pyridine nucleotide cycling (plants) GEM_2430 PWY-5392 reductive TCA cycle II GEM_2430 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation GEM_2430 PWY-5690 TCA cycle II (plants and fungi) GEM_2430 PWY-5913 TCA cycle VI (obligate autotrophs) GEM_2430 PWY-6728 methylaspartate cycle GEM_2430 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) GEM_2430 PWY-7254 TCA cycle VII (acetate-producers) GEM_2430 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) GEM_2435 PWY-3841 folate transformations II GEM_2435 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I GEM_2435 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II GEM_2435 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV GEM_2435 PWY-7199 pyrimidine deoxyribonucleosides salvage GEM_2435 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP GEM_2438 PWY-3841 folate transformations II GEM_2438 PWY-6614 tetrahydrofolate biosynthesis GEM_2449 PWY-6829 tRNA methylation (yeast) GEM_2449 PWY-7285 methylwyosine biosynthesis GEM_2449 PWY-7286 7-(3-amino-3-carboxypropyl)-wyosine biosynthesis GEM_2465 PWY-6936 seleno-amino acid biosynthesis GEM_2469 PWY-7346 UDP-α-D-glucuronate biosynthesis (from UDP-glucose) GEM_2474 PWY-7205 CMP phosphorylation GEM_2475 PWY-6163 chorismate biosynthesis from 3-dehydroquinate GEM_2476 PWY-7303 3-dimethylallyl-4-hydroxybenzoate biosynthesis GEM_2477 PWY-3461 L-tyrosine biosynthesis II GEM_2477 PWY-3462 L-phenylalanine biosynthesis II GEM_2477 PWY-6120 L-tyrosine biosynthesis III GEM_2477 PWY-6627 salinosporamide A biosynthesis GEM_2477 PWY-7432 L-phenylalanine biosynthesis III (cytosolic, plants) GEM_2482 PWY-5855 ubiquinol-7 biosynthesis (prokaryotic) GEM_2482 PWY-5856 ubiquinol-9 biosynthesis (prokaryotic) GEM_2482 PWY-5857 ubiquinol-10 biosynthesis (prokaryotic) GEM_2482 PWY-5870 ubiquinol-8 biosynthesis (eukaryotic) GEM_2482 PWY-5871 ubiquinol-9 biosynthesis (eukaryotic) GEM_2482 PWY-5872 ubiquinol-10 biosynthesis (eukaryotic) GEM_2482 PWY-5873 ubiquinol-7 biosynthesis (eukaryotic) GEM_2482 PWY-6708 ubiquinol-8 biosynthesis (prokaryotic) GEM_2482 PWY-7230 ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic) GEM_2482 PWY-7233 ubiquinol-6 bypass biosynthesis (eukaryotic) GEM_2483 PWY-181 photorespiration GEM_2489 PWY-1881 formate oxidation to CO2 GEM_2489 PWY-5497 purine nucleobases degradation II (anaerobic) GEM_2489 PWY-6696 oxalate degradation III GEM_2498 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation GEM_2501 PWY-6610 adenine and adenosine salvage IV GEM_2502 PWY-5497 purine nucleobases degradation II (anaerobic) GEM_2502 PWY-6606 guanosine nucleotides degradation II GEM_2502 PWY-6608 guanosine nucleotides degradation III GEM_2502 PWY-7442 drosopterin and aurodrosopterin biosynthesis GEM_2506 PWY-5484 glycolysis II (from fructose 6-phosphate) GEM_2517 PWY-3461 L-tyrosine biosynthesis II GEM_2517 PWY-3462 L-phenylalanine biosynthesis II GEM_2517 PWY-6120 L-tyrosine biosynthesis III GEM_2517 PWY-6627 salinosporamide A biosynthesis GEM_2528 PWY-7221 guanosine ribonucleotides de novo biosynthesis GEM_2531 PWY-7206 pyrimidine deoxyribonucleotides dephosphorylation GEM_2552 PWY-6281 L-selenocysteine biosynthesis II (archaea and eukaryotes) GEM_2564 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) GEM_2565 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II GEM_2565 PWY-6855 chitin degradation I (archaea) GEM_2565 PWY-6906 chitin derivatives degradation GEM_2566 PWY-2723 trehalose degradation V GEM_2566 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II GEM_2566 PWY-5661 GDP-glucose biosynthesis GEM_2566 PWY-7238 sucrose biosynthesis II GEM_2566 PWY-7385 1,3-propanediol biosynthesis (engineered) GEM_2569 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) GEM_2571 PWY-6167 flavin biosynthesis II (archaea) GEM_2571 PWY-6168 flavin biosynthesis III (fungi) GEM_2571 PWY-7219 adenosine ribonucleotides de novo biosynthesis GEM_2573 PWY-6167 flavin biosynthesis II (archaea) GEM_2573 PWY-6168 flavin biosynthesis III (fungi) GEM_2573 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) GEM_2574 PWY-6167 flavin biosynthesis II (archaea) GEM_2574 PWY-6168 flavin biosynthesis III (fungi) GEM_2598 PWY-5692 allantoin degradation to glyoxylate II GEM_2598 PWY-5698 allantoin degradation to ureidoglycolate II (ammonia producing) GEM_2601 PWY-5691 urate degradation to allantoin I GEM_2601 PWY-7394 urate degradation to allantoin II GEM_2602 PWY-5691 urate degradation to allantoin I GEM_2602 PWY-7394 urate degradation to allantoin II GEM_2605 PWY-5691 urate degradation to allantoin I GEM_2605 PWY-7394 urate degradation to allantoin II GEM_2621 PWY-5704 urea degradation II GEM_2622 PWY-5704 urea degradation II GEM_2623 PWY-5704 urea degradation II GEM_2630 PWY-6749 CMP-legionaminate biosynthesis I GEM_2634 PWY-3821 galactose degradation III GEM_2634 PWY-6317 galactose degradation I (Leloir pathway) GEM_2634 PWY-6397 mycolyl-arabinogalactan-peptidoglycan complex biosynthesis GEM_2634 PWY-6527 stachyose degradation GEM_2634 PWY-7328 superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis GEM_2634 PWY-7344 UDP-D-galactose biosynthesis GEM_2635 PWY-5265 peptidoglycan biosynthesis II (staphylococci) GEM_2635 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) GEM_2635 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) GEM_2638 PWY-5265 peptidoglycan biosynthesis II (staphylococci) GEM_2638 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) GEM_2638 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) GEM_2645 PWY-5738 GDP-6-deoxy-D-talose biosynthesis GEM_2645 PWY-5739 GDP-D-perosamine biosynthesis GEM_2645 PWY-5740 GDP-L-colitose biosynthesis GEM_2645 PWY-66 GDP-L-fucose biosynthesis I (from GDP-D-mannose) GEM_2651 PWY-5659 GDP-mannose biosynthesis GEM_2651 PWY-6073 alginate biosynthesis I (algal) GEM_2651 PWY-6082 alginate biosynthesis II (bacterial) GEM_2651 PWY-882 L-ascorbate biosynthesis I (L-galactose pathway) GEM_2654 PWY-3221 dTDP-L-rhamnose biosynthesis II GEM_2654 PWY-6808 dTDP-D-forosamine biosynthesis GEM_2654 PWY-6942 dTDP-D-desosamine biosynthesis GEM_2654 PWY-6953 dTDP-3-acetamido-3,6-dideoxy-α-D-galactose biosynthesis GEM_2654 PWY-6973 dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis GEM_2654 PWY-6974 dTDP-L-olivose biosynthesis GEM_2654 PWY-6976 dTDP-L-mycarose biosynthesis GEM_2654 PWY-7104 dTDP-L-megosamine biosynthesis GEM_2654 PWY-7301 dTDP-β-L-noviose biosynthesis GEM_2654 PWY-7312 dTDP-D-β-fucofuranose biosynthesis GEM_2654 PWY-7315 dTDP-N-acetylthomosamine biosynthesis GEM_2654 PWY-7316 dTDP-N-acetylviosamine biosynthesis GEM_2654 PWY-7318 dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis GEM_2654 PWY-7413 dTDP-6-deoxy-α-D-allose biosynthesis GEM_2654 PWY-7414 dTDP-α-D-mycaminose biosynthesis GEM_2654 PWY-7440 dTDP-β-L-4-epi-vancosamine biosynthesis GEM_2655 PWY-3221 dTDP-L-rhamnose biosynthesis II GEM_2655 PWY-6808 dTDP-D-forosamine biosynthesis GEM_2655 PWY-6942 dTDP-D-desosamine biosynthesis GEM_2655 PWY-6953 dTDP-3-acetamido-3,6-dideoxy-α-D-galactose biosynthesis GEM_2655 PWY-6973 dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis GEM_2655 PWY-6974 dTDP-L-olivose biosynthesis GEM_2655 PWY-6976 dTDP-L-mycarose biosynthesis GEM_2655 PWY-7104 dTDP-L-megosamine biosynthesis GEM_2655 PWY-7301 dTDP-β-L-noviose biosynthesis GEM_2655 PWY-7312 dTDP-D-β-fucofuranose biosynthesis GEM_2655 PWY-7315 dTDP-N-acetylthomosamine biosynthesis GEM_2655 PWY-7316 dTDP-N-acetylviosamine biosynthesis GEM_2655 PWY-7318 dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis GEM_2655 PWY-7413 dTDP-6-deoxy-α-D-allose biosynthesis GEM_2655 PWY-7414 dTDP-α-D-mycaminose biosynthesis GEM_2655 PWY-7440 dTDP-β-L-4-epi-vancosamine biosynthesis GEM_2658 PWY-5686 UMP biosynthesis GEM_2659 PWY-5686 UMP biosynthesis GEM_2696 PWY-5497 purine nucleobases degradation II (anaerobic) GEM_2696 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation GEM_2696 PWY-6538 caffeine degradation III (bacteria, via demethylation) GEM_2696 PWY-6596 adenosine nucleotides degradation I GEM_2696 PWY-6606 guanosine nucleotides degradation II GEM_2696 PWY-6607 guanosine nucleotides degradation I GEM_2696 PWY-6608 guanosine nucleotides degradation III GEM_2696 PWY-6999 theophylline degradation GEM_2697 PWY-5497 purine nucleobases degradation II (anaerobic) GEM_2697 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation GEM_2697 PWY-6538 caffeine degradation III (bacteria, via demethylation) GEM_2697 PWY-6596 adenosine nucleotides degradation I GEM_2697 PWY-6606 guanosine nucleotides degradation II GEM_2697 PWY-6607 guanosine nucleotides degradation I GEM_2697 PWY-6608 guanosine nucleotides degradation III GEM_2697 PWY-6999 theophylline degradation GEM_2701 PWY-6832 2-aminoethylphosphonate degradation II GEM_2704 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II GEM_2704 PWY-5523 5,6-dimethylbenzimidazole biosynthesis GEM_2713 PWY-1801 formaldehyde oxidation II (glutathione-dependent) GEM_2727 PWY-1622 formaldehyde assimilation I (serine pathway) GEM_2727 PWY-181 photorespiration GEM_2727 PWY-2161 folate polyglutamylation GEM_2727 PWY-2201 folate transformations I GEM_2727 PWY-3661 glycine betaine degradation I GEM_2727 PWY-3661-1 glycine betaine degradation II (mammalian) GEM_2727 PWY-3841 folate transformations II GEM_2727 PWY-5497 purine nucleobases degradation II (anaerobic) GEM_2754 PWY-7335 UDP-N-acetyl-α-D-mannosaminouronate biosynthesis GEM_2763 PWY-2781 cis-zeatin biosynthesis GEM_2764 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I GEM_2764 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II GEM_2764 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis GEM_2768 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I GEM_2768 PWY-6148 tetrahydromethanopterin biosynthesis GEM_2768 PWY-6797 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea) GEM_2768 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) GEM_2770 PWY-6654 phosphopantothenate biosynthesis III GEM_2771 PWY-5958 acridone alkaloid biosynthesis GEM_2771 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis GEM_2771 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis GEM_2780 PWY-5083 NAD/NADH phosphorylation and dephosphorylation GEM_2780 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) GEM_2780 PWY-7269 NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast) GEM_2786 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I GEM_2786 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) GEM_2786 PWY-6164 3-dehydroquinate biosynthesis I GEM_2790 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II GEM_2790 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I GEM_2790 PWY-6268 adenosylcobalamin salvage from cobalamin GEM_2790 PWY-6269 adenosylcobalamin salvage from cobinamide II GEM_2791 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) GEM_2791 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) GEM_2792 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) GEM_2792 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) GEM_2793 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) GEM_2793 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) GEM_2796 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) GEM_2797 PWY-3341 L-proline biosynthesis III GEM_2797 PWY-4981 L-proline biosynthesis II (from arginine) GEM_2797 PWY-6344 L-ornithine degradation II (Stickland reaction) GEM_2804 PWY-6700 queuosine biosynthesis GEM_2805 PWY-6700 queuosine biosynthesis GEM_2832 PWY-6123 inosine-5'-phosphate biosynthesis I GEM_2832 PWY-6124 inosine-5'-phosphate biosynthesis II GEM_2832 PWY-7234 inosine-5'-phosphate biosynthesis III GEM_2847 PWY-5686 UMP biosynthesis GEM_2855 PWY-6123 inosine-5'-phosphate biosynthesis I GEM_2855 PWY-6124 inosine-5'-phosphate biosynthesis II GEM_2855 PWY-7219 adenosine ribonucleotides de novo biosynthesis GEM_2855 PWY-7234 inosine-5'-phosphate biosynthesis III GEM_2858 PWY-5530 sorbitol biosynthesis II GEM_2858 PWY-6163 chorismate biosynthesis from 3-dehydroquinate GEM_2860 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) GEM_2860 PWY-6507 4-deoxy-L-threo-hex-4-enopyranuronate degradation GEM_2860 PWY-7242 D-fructuronate degradation GEM_2860 PWY-7310 D-glucosaminate degradation GEM_2861 PWY-5101 L-isoleucine biosynthesis II GEM_2861 PWY-5103 L-isoleucine biosynthesis III GEM_2861 PWY-5104 L-isoleucine biosynthesis IV GEM_2861 PWY-7111 pyruvate fermentation to isobutanol (engineered) GEM_2870 PWY-2941 L-lysine biosynthesis II GEM_2870 PWY-2942 L-lysine biosynthesis III GEM_2870 PWY-5097 L-lysine biosynthesis VI GEM_2873 PWY-5694 allantoin degradation to glyoxylate I GEM_2873 PWY-5705 allantoin degradation to glyoxylate III GEM_2874 PWY-5697 allantoin degradation to ureidoglycolate I (urea producing) GEM_2884 PWY-1042 glycolysis IV (plant cytosol) GEM_2884 PWY-5484 glycolysis II (from fructose 6-phosphate) GEM_2884 PWY-6901 superpathway of glucose and xylose degradation GEM_2884 PWY-7003 glycerol degradation to butanol GEM_2885 PWY-1861 formaldehyde assimilation II (RuMP Cycle) GEM_2885 PWY-5723 Rubisco shunt GEM_2885 PWY-6891 thiazole biosynthesis II (Bacillus) GEM_2885 PWY-6892 thiazole biosynthesis I (E. coli) GEM_2885 PWY-6901 superpathway of glucose and xylose degradation GEM_2885 PWY-7560 methylerythritol phosphate pathway II GEM_2891 PWY-1281 sulfoacetaldehyde degradation I GEM_2891 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type GEM_2891 PWY-5482 pyruvate fermentation to acetate II GEM_2891 PWY-5485 pyruvate fermentation to acetate IV GEM_2891 PWY-5497 purine nucleobases degradation II (anaerobic) GEM_2891 PWY-6637 sulfolactate degradation II GEM_2891 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type GEM_2892 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) GEM_2892 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) GEM_2892 PWY-6896 thiamin salvage I GEM_2892 PWY-6897 thiamin salvage II GEM_2893 PWY-5269 cardiolipin biosynthesis II GEM_2893 PWY-5668 cardiolipin biosynthesis I GEM_2896 PWY-5686 UMP biosynthesis GEM_2903 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) GEM_2903 PWY-6507 4-deoxy-L-threo-hex-4-enopyranuronate degradation GEM_2903 PWY-7242 D-fructuronate degradation GEM_2903 PWY-7310 D-glucosaminate degradation GEM_2904 PWY-7130 L-glucose degradation GEM_2909 PWY-6163 chorismate biosynthesis from 3-dehydroquinate GEM_2915 PWY-6163 chorismate biosynthesis from 3-dehydroquinate GEM_2915 PWY-6416 quinate degradation II GEM_2915 PWY-6707 gallate biosynthesis GEM_2924 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III GEM_2924 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I GEM_2924 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV GEM_2924 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP GEM_2924 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II GEM_2924 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II GEM_2924 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I GEM_2924 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis GEM_2925 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III GEM_2925 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I GEM_2925 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV GEM_2925 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP GEM_2925 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II GEM_2925 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II GEM_2925 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I GEM_2925 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis GEM_2949 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) GEM_2957 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) GEM_2957 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) GEM_2958 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) GEM_2958 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) GEM_2959 PWY-5265 peptidoglycan biosynthesis II (staphylococci) GEM_2959 PWY-6385 peptidoglycan biosynthesis III (mycobacteria) GEM_2959 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) GEM_2959 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) GEM_2961 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) GEM_2961 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) GEM_2962 PWY-5265 peptidoglycan biosynthesis II (staphylococci) GEM_2962 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) GEM_2962 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) GEM_2963 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) GEM_2963 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) GEM_2982 PWY-1361 benzoyl-CoA degradation I (aerobic) GEM_2982 PWY-2361 3-oxoadipate degradation GEM_2982 PWY-6185 4-methylcatechol degradation (ortho cleavage) GEM_2985 PWY-1341 phenylacetate degradation II (anaerobic) GEM_2985 PWY-6318 L-phenylalanine degradation IV (mammalian, via side chain) GEM_2989 PWY-1861 formaldehyde assimilation II (RuMP Cycle) GEM_2989 PWY-5723 Rubisco shunt GEM_2990 PWY-181 photorespiration GEM_2991 PWY-5958 acridone alkaloid biosynthesis GEM_2991 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis GEM_2991 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis GEM_2992 PWY-5958 acridone alkaloid biosynthesis GEM_2992 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis GEM_2992 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis GEM_3014 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) GEM_3081 PWY-3781 aerobic respiration I (cytochrome c) GEM_3081 PWY-6692 Fe(II) oxidation GEM_3081 PWY-7082 ammonia oxidation IV (autotrophic ammonia oxidizers) GEM_3081 PWY-7279 aerobic respiration II (cytochrome c) (yeast) GEM_3082 PWY-5663 tetrahydrobiopterin biosynthesis I GEM_3082 PWY-5664 tetrahydrobiopterin biosynthesis II GEM_3082 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I GEM_3082 PWY-6703 preQ0 biosynthesis GEM_3082 PWY-6983 tetrahydrobiopterin biosynthesis III GEM_3082 PWY-7442 drosopterin and aurodrosopterin biosynthesis GEM_3099 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) GEM_3099 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) GEM_3109 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) GEM_3109 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) GEM_3109 PWY-6897 thiamin salvage II GEM_3109 PWY-6907 thiamin diphosphate biosynthesis III (Staphylococcus) GEM_3109 PWY-6908 thiamin diphosphate biosynthesis IV (eukaryotes) GEM_3109 PWY-7353 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) GEM_3109 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast) GEM_3110 PWY-6891 thiazole biosynthesis II (Bacillus) GEM_3110 PWY-6892 thiazole biosynthesis I (E. coli) GEM_3128 PWY-6164 3-dehydroquinate biosynthesis I GEM_3129 PWY-6163 chorismate biosynthesis from 3-dehydroquinate GEM_3143 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) GEM_3143 PWY-5189 tetrapyrrole biosynthesis II (from glycine)