Bphyt_0041	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Bphyt_0056	PWY-5704	urea degradation II
Bphyt_0057	PWY-5704	urea degradation II
Bphyt_0068	PWY-7533	gliotoxin biosynthesis
Bphyt_0105	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Bphyt_0108	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Bphyt_0108	PWY-3162	L-tryptophan degradation V (side chain pathway)
Bphyt_0108	PWY-5057	L-valine degradation II
Bphyt_0108	PWY-5076	L-leucine degradation III
Bphyt_0108	PWY-5078	L-isoleucine degradation II
Bphyt_0108	PWY-5079	L-phenylalanine degradation III
Bphyt_0108	PWY-5082	L-methionine degradation III
Bphyt_0108	PWY-5480	pyruvate fermentation to ethanol I
Bphyt_0108	PWY-5486	pyruvate fermentation to ethanol II
Bphyt_0108	PWY-5751	phenylethanol biosynthesis
Bphyt_0108	PWY-6028	acetoin degradation
Bphyt_0108	PWY-6313	serotonin degradation
Bphyt_0108	PWY-6333	acetaldehyde biosynthesis I
Bphyt_0108	PWY-6342	noradrenaline and adrenaline degradation
Bphyt_0108	PWY-6587	pyruvate fermentation to ethanol III
Bphyt_0108	PWY-6802	salidroside biosynthesis
Bphyt_0108	PWY-6871	3-methylbutanol biosynthesis
Bphyt_0108	PWY-7013	L-1,2-propanediol degradation
Bphyt_0108	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Bphyt_0108	PWY-7118	chitin degradation to ethanol
Bphyt_0108	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Bphyt_0108	PWY-7557	dehydrodiconiferyl alcohol degradation
Bphyt_0110	PWY-6840	homoglutathione biosynthesis
Bphyt_0110	PWY-7255	ergothioneine biosynthesis I (bacteria)
Bphyt_0126	PWY-6157	autoinducer AI-1 biosynthesis
Bphyt_0132	PWY-4381	fatty acid biosynthesis initiation I
Bphyt_0138	PWY-4381	fatty acid biosynthesis initiation I
Bphyt_0139	PWY-4381	fatty acid biosynthesis initiation I
Bphyt_0143	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Bphyt_0151	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Bphyt_0181	PWY-5676	acetyl-CoA fermentation to butanoate II
Bphyt_0181	PWY-5741	ethylmalonyl-CoA pathway
Bphyt_0181	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Bphyt_0228	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Bphyt_0271	PWY-1622	formaldehyde assimilation I (serine pathway)
Bphyt_0271	PWY-181	photorespiration
Bphyt_0271	PWY-2161	folate polyglutamylation
Bphyt_0271	PWY-2201	folate transformations I
Bphyt_0271	PWY-3661	glycine betaine degradation I
Bphyt_0271	PWY-3661-1	glycine betaine degradation II (mammalian)
Bphyt_0271	PWY-3841	folate transformations II
Bphyt_0271	PWY-5497	purine nucleobases degradation II (anaerobic)
Bphyt_0304	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Bphyt_0317	PWY-6703	preQ<sub>0</sub> biosynthesis
Bphyt_0318	PWY-6703	preQ<sub>0</sub> biosynthesis
Bphyt_0328	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Bphyt_0335	PWY-5344	L-homocysteine biosynthesis
Bphyt_0338	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Bphyt_0338	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Bphyt_0349	PWY-2941	L-lysine biosynthesis II
Bphyt_0349	PWY-5097	L-lysine biosynthesis VI
Bphyt_0351	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Bphyt_0351	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Bphyt_0390	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Bphyt_0392	PWY-723	alkylnitronates degradation
Bphyt_0406	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
Bphyt_0431	PWY-5743	3-hydroxypropanoate cycle
Bphyt_0431	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Bphyt_0431	PWY-6728	methylaspartate cycle
Bphyt_0431	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Bphyt_0432	PWY-723	alkylnitronates degradation
Bphyt_0440	PWY-5074	mevalonate degradation
Bphyt_0444	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Bphyt_0445	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Bphyt_0446	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Bphyt_0446	PWY-6578	8-amino-7-oxononanoate biosynthesis III
Bphyt_0446	PWY-7147	8-amino-7-oxononanoate biosynthesis II
Bphyt_0462	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Bphyt_0462	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Bphyt_0462	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Bphyt_0462	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Bphyt_0476	PWY-2201	folate transformations I
Bphyt_0476	PWY-3841	folate transformations II
Bphyt_0489	PWY-3961	phosphopantothenate biosynthesis II
Bphyt_0490	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Bphyt_0490	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Bphyt_0498	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Bphyt_0498	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Bphyt_0503	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Bphyt_0503	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Bphyt_0504	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Bphyt_0504	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Bphyt_0504	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Bphyt_0534	PWY-1622	formaldehyde assimilation I (serine pathway)
Bphyt_0534	PWY-5484	glycolysis II (from fructose 6-phosphate)
Bphyt_0538	PWY-5667	CDP-diacylglycerol biosynthesis I
Bphyt_0538	PWY-5981	CDP-diacylglycerol biosynthesis III
Bphyt_0542	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Bphyt_0545	PWY-3781	aerobic respiration I (cytochrome c)
Bphyt_0545	PWY-4521	arsenite oxidation I (respiratory)
Bphyt_0545	PWY-6692	Fe(II) oxidation
Bphyt_0545	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Bphyt_0561	PWY-6906	chitin derivatives degradation
Bphyt_0561	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Bphyt_0561	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Bphyt_0564	PWY-7310	D-glucosaminate degradation
Bphyt_0566	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
Bphyt_0573	PWY-6871	3-methylbutanol biosynthesis
Bphyt_0586	PWY-7560	methylerythritol phosphate pathway II
Bphyt_0600	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Bphyt_0600	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Bphyt_0603	PWY-6605	adenine and adenosine salvage II
Bphyt_0603	PWY-6610	adenine and adenosine salvage IV
Bphyt_0606	PWY-2201	folate transformations I
Bphyt_0606	PWY-5497	purine nucleobases degradation II (anaerobic)
Bphyt_0622	PWY-3781	aerobic respiration I (cytochrome c)
Bphyt_0622	PWY-4521	arsenite oxidation I (respiratory)
Bphyt_0622	PWY-6692	Fe(II) oxidation
Bphyt_0622	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Bphyt_0639	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Bphyt_0643	PWY-6700	queuosine biosynthesis
Bphyt_0644	PWY-5381	pyridine nucleotide cycling (plants)
Bphyt_0644	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Bphyt_0644	PWY-6596	adenosine nucleotides degradation I
Bphyt_0644	PWY-6606	guanosine nucleotides degradation II
Bphyt_0644	PWY-6607	guanosine nucleotides degradation I
Bphyt_0644	PWY-6608	guanosine nucleotides degradation III
Bphyt_0644	PWY-7185	UTP and CTP dephosphorylation I
Bphyt_0646	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Bphyt_0646	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Bphyt_0649	PWY-5839	menaquinol-7 biosynthesis
Bphyt_0649	PWY-5844	menaquinol-9 biosynthesis
Bphyt_0649	PWY-5849	menaquinol-6 biosynthesis
Bphyt_0649	PWY-5890	menaquinol-10 biosynthesis
Bphyt_0649	PWY-5891	menaquinol-11 biosynthesis
Bphyt_0649	PWY-5892	menaquinol-12 biosynthesis
Bphyt_0649	PWY-5895	menaquinol-13 biosynthesis
Bphyt_0662	PWY-1361	benzoyl-CoA degradation I (aerobic)
Bphyt_0662	PWY-5109	2-methylbutanoate biosynthesis
Bphyt_0662	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Bphyt_0662	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Bphyt_0662	PWY-5177	glutaryl-CoA degradation
Bphyt_0662	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Bphyt_0662	PWY-6435	4-hydroxybenzoate biosynthesis V
Bphyt_0662	PWY-6583	pyruvate fermentation to butanol I
Bphyt_0662	PWY-6863	pyruvate fermentation to hexanol
Bphyt_0662	PWY-6883	pyruvate fermentation to butanol II
Bphyt_0662	PWY-6944	androstenedione degradation
Bphyt_0662	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Bphyt_0662	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Bphyt_0662	PWY-7007	methyl ketone biosynthesis
Bphyt_0662	PWY-7046	4-coumarate degradation (anaerobic)
Bphyt_0662	PWY-7094	fatty acid salvage
Bphyt_0662	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Bphyt_0662	PWY-735	jasmonic acid biosynthesis
Bphyt_0662	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Bphyt_0681	PWY-5386	methylglyoxal degradation I
Bphyt_0698	PWY-6700	queuosine biosynthesis
Bphyt_0699	PWY-6700	queuosine biosynthesis
Bphyt_0712	PWY-5506	methanol oxidation to formaldehyde IV
Bphyt_0716	PWY-3341	L-proline biosynthesis III
Bphyt_0716	PWY-4981	L-proline biosynthesis II (from arginine)
Bphyt_0716	PWY-6344	L-ornithine degradation II (Stickland reaction)
Bphyt_0717	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Bphyt_0719	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Bphyt_0719	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Bphyt_0720	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Bphyt_0720	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Bphyt_0721	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Bphyt_0721	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Bphyt_0722	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Bphyt_0722	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Bphyt_0722	PWY-6268	adenosylcobalamin salvage from cobalamin
Bphyt_0722	PWY-6269	adenosylcobalamin salvage from cobinamide II
Bphyt_0725	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Bphyt_0725	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Bphyt_0725	PWY-6164	3-dehydroquinate biosynthesis I
Bphyt_0731	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Bphyt_0731	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Bphyt_0731	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Bphyt_0739	PWY-5958	acridone alkaloid biosynthesis
Bphyt_0739	PWY-6543	4-aminobenzoate biosynthesis
Bphyt_0739	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Bphyt_0739	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Bphyt_0739	PWY-6722	candicidin biosynthesis
Bphyt_0741	PWY-6654	phosphopantothenate biosynthesis III
Bphyt_0743	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Bphyt_0743	PWY-6148	tetrahydromethanopterin biosynthesis
Bphyt_0743	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Bphyt_0743	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Bphyt_0748	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Bphyt_0748	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Bphyt_0748	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Bphyt_0749	PWY-2781	<i>cis</i>-zeatin biosynthesis
Bphyt_0765	PWY-1622	formaldehyde assimilation I (serine pathway)
Bphyt_0765	PWY-181	photorespiration
Bphyt_0765	PWY-2161	folate polyglutamylation
Bphyt_0765	PWY-2201	folate transformations I
Bphyt_0765	PWY-3661	glycine betaine degradation I
Bphyt_0765	PWY-3661-1	glycine betaine degradation II (mammalian)
Bphyt_0765	PWY-3841	folate transformations II
Bphyt_0765	PWY-5497	purine nucleobases degradation II (anaerobic)
Bphyt_0790	PWY-5913	TCA cycle VI (obligate autotrophs)
Bphyt_0790	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
Bphyt_0790	PWY-6638	sulfolactate degradation III
Bphyt_0790	PWY-6642	(<i>R</i>)-cysteate degradation
Bphyt_0790	PWY-6643	coenzyme M biosynthesis II
Bphyt_0790	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Bphyt_0790	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Bphyt_0790	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Bphyt_0791	PWY-6832	2-aminoethylphosphonate degradation II
Bphyt_0793	PWY-5497	purine nucleobases degradation II (anaerobic)
Bphyt_0793	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Bphyt_0793	PWY-6538	caffeine degradation III (bacteria, via demethylation)
Bphyt_0793	PWY-6596	adenosine nucleotides degradation I
Bphyt_0793	PWY-6606	guanosine nucleotides degradation II
Bphyt_0793	PWY-6607	guanosine nucleotides degradation I
Bphyt_0793	PWY-6608	guanosine nucleotides degradation III
Bphyt_0793	PWY-6999	theophylline degradation
Bphyt_0794	PWY-5497	purine nucleobases degradation II (anaerobic)
Bphyt_0794	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Bphyt_0794	PWY-6538	caffeine degradation III (bacteria, via demethylation)
Bphyt_0794	PWY-6596	adenosine nucleotides degradation I
Bphyt_0794	PWY-6606	guanosine nucleotides degradation II
Bphyt_0794	PWY-6607	guanosine nucleotides degradation I
Bphyt_0794	PWY-6608	guanosine nucleotides degradation III
Bphyt_0794	PWY-6999	theophylline degradation
Bphyt_0817	PWY-5659	GDP-mannose biosynthesis
Bphyt_0817	PWY-6073	alginate biosynthesis I (algal)
Bphyt_0817	PWY-6082	alginate biosynthesis II (bacterial)
Bphyt_0817	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Bphyt_0818	PWY-6655	xanthan biosynthesis
Bphyt_0818	PWY-6658	acetan biosynthesis
Bphyt_0821	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Bphyt_0821	PWY-5739	GDP-D-perosamine biosynthesis
Bphyt_0821	PWY-5740	GDP-L-colitose biosynthesis
Bphyt_0821	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Bphyt_0822	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Bphyt_0851	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Bphyt_0851	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Bphyt_0871	PWY-5686	UMP biosynthesis
Bphyt_0874	PWY-5686	UMP biosynthesis
Bphyt_0878	PWY-3221	dTDP-L-rhamnose biosynthesis II
Bphyt_0878	PWY-6808	dTDP-D-forosamine biosynthesis
Bphyt_0878	PWY-6942	dTDP-D-desosamine biosynthesis
Bphyt_0878	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Bphyt_0878	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Bphyt_0878	PWY-6974	dTDP-L-olivose biosynthesis
Bphyt_0878	PWY-6976	dTDP-L-mycarose biosynthesis
Bphyt_0878	PWY-7104	dTDP-L-megosamine biosynthesis
Bphyt_0878	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Bphyt_0878	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Bphyt_0878	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Bphyt_0878	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Bphyt_0878	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Bphyt_0878	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Bphyt_0878	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Bphyt_0878	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Bphyt_0879	PWY-3221	dTDP-L-rhamnose biosynthesis II
Bphyt_0879	PWY-6808	dTDP-D-forosamine biosynthesis
Bphyt_0879	PWY-6942	dTDP-D-desosamine biosynthesis
Bphyt_0879	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Bphyt_0879	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Bphyt_0879	PWY-6974	dTDP-L-olivose biosynthesis
Bphyt_0879	PWY-6976	dTDP-L-mycarose biosynthesis
Bphyt_0879	PWY-7104	dTDP-L-megosamine biosynthesis
Bphyt_0879	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Bphyt_0879	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Bphyt_0879	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Bphyt_0879	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Bphyt_0879	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Bphyt_0879	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Bphyt_0879	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Bphyt_0879	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Bphyt_0888	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
Bphyt_0897	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Bphyt_0897	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Bphyt_0901	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Bphyt_0901	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Bphyt_0901	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Bphyt_0903	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Bphyt_0903	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Bphyt_0903	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Bphyt_0916	PWY-3821	galactose degradation III
Bphyt_0916	PWY-6317	galactose degradation I (Leloir pathway)
Bphyt_0916	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Bphyt_0916	PWY-6527	stachyose degradation
Bphyt_0916	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Bphyt_0916	PWY-7344	UDP-D-galactose biosynthesis
Bphyt_0920	PWY-6749	CMP-legionaminate biosynthesis I
Bphyt_0928	PWY-5704	urea degradation II
Bphyt_0929	PWY-5704	urea degradation II
Bphyt_0930	PWY-5704	urea degradation II
Bphyt_0970	PWY-6683	sulfate reduction III (assimilatory)
Bphyt_0973	PWY-5278	sulfite oxidation III
Bphyt_0973	PWY-5340	sulfate activation for sulfonation
Bphyt_0973	PWY-6683	sulfate reduction III (assimilatory)
Bphyt_0973	PWY-6932	selenate reduction
Bphyt_0974	PWY-5278	sulfite oxidation III
Bphyt_0974	PWY-5340	sulfate activation for sulfonation
Bphyt_0974	PWY-6683	sulfate reduction III (assimilatory)
Bphyt_0974	PWY-6932	selenate reduction
Bphyt_0975	PWY-5194	siroheme biosynthesis
Bphyt_0975	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Bphyt_0981	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Bphyt_0984	PWY-5988	wound-induced proteolysis I
Bphyt_0984	PWY-6018	seed germination protein turnover
Bphyt_0988	PWY-5101	L-isoleucine biosynthesis II
Bphyt_0988	PWY-5103	L-isoleucine biosynthesis III
Bphyt_0988	PWY-5104	L-isoleucine biosynthesis IV
Bphyt_0988	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Bphyt_0993	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
Bphyt_0993	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Bphyt_0998	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Bphyt_0998	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Bphyt_0998	PWY-6269	adenosylcobalamin salvage from cobinamide II
Bphyt_0999	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Bphyt_0999	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Bphyt_0999	PWY-6269	adenosylcobalamin salvage from cobinamide II
Bphyt_1000	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Bphyt_1000	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Bphyt_1000	PWY-6269	adenosylcobalamin salvage from cobinamide II
Bphyt_1002	PWY-5443	aminopropanol phosphate biosynthesis I
Bphyt_1004	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Bphyt_1004	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Bphyt_1004	PWY-6269	adenosylcobalamin salvage from cobinamide II
Bphyt_1009	PWY-5155	&beta;-alanine biosynthesis III
Bphyt_1018	PWY-6854	ethylene biosynthesis III (microbes)
Bphyt_1019	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Bphyt_1025	PWY-2723	trehalose degradation V
Bphyt_1025	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Bphyt_1025	PWY-5661	GDP-glucose biosynthesis
Bphyt_1025	PWY-7238	sucrose biosynthesis II
Bphyt_1025	PWY-7385	1,3-propanediol biosynthesis (engineered)
Bphyt_1026	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Bphyt_1026	PWY-6855	chitin degradation I (archaea)
Bphyt_1026	PWY-6906	chitin derivatives degradation
Bphyt_1027	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Bphyt_1041	PWY-40	putrescine biosynthesis I
Bphyt_1041	PWY-6305	putrescine biosynthesis IV
Bphyt_1044	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Bphyt_1065	PWY-4983	L-citrulline-nitric oxide cycle
Bphyt_1065	PWY-4984	urea cycle
Bphyt_1065	PWY-5	canavanine biosynthesis
Bphyt_1065	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Bphyt_1065	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Bphyt_1068	PWY-1622	formaldehyde assimilation I (serine pathway)
Bphyt_1068	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Bphyt_1068	PWY-5913	TCA cycle VI (obligate autotrophs)
Bphyt_1068	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Bphyt_1068	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Bphyt_1068	PWY-6549	L-glutamine biosynthesis III
Bphyt_1068	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Bphyt_1068	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Bphyt_1068	PWY-7124	ethylene biosynthesis V (engineered)
Bphyt_1069	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Bphyt_1069	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Bphyt_1070	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Bphyt_1070	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Bphyt_1090	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Bphyt_1090	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Bphyt_1090	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Bphyt_1090	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Bphyt_1101	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Bphyt_1101	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Bphyt_1101	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Bphyt_1101	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Bphyt_1221	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
Bphyt_1221	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
Bphyt_1221	PWY-6148	tetrahydromethanopterin biosynthesis
Bphyt_1228	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Bphyt_1228	PWY-5723	Rubisco shunt
Bphyt_1281	PWY-5874	heme degradation
Bphyt_1281	PWY-5915	phycoerythrobilin biosynthesis I
Bphyt_1281	PWY-5917	phycocyanobilin biosynthesis
Bphyt_1281	PWY-7170	phytochromobilin biosynthesis
Bphyt_1298	PWY-5381	pyridine nucleotide cycling (plants)
Bphyt_1298	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Bphyt_1299	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Bphyt_1299	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Bphyt_1300	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Bphyt_1300	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Bphyt_1300	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Bphyt_1302	PWY-7183	pyrimidine nucleobases salvage I
Bphyt_1321	PWY-7039	phosphatidate metabolism, as a signaling molecule
Bphyt_1328	PWY-5101	L-isoleucine biosynthesis II
Bphyt_1328	PWY-5103	L-isoleucine biosynthesis III
Bphyt_1328	PWY-5104	L-isoleucine biosynthesis IV
Bphyt_1328	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Bphyt_1328	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Bphyt_1328	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Bphyt_1328	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Bphyt_1329	PWY-5101	L-isoleucine biosynthesis II
Bphyt_1329	PWY-5103	L-isoleucine biosynthesis III
Bphyt_1329	PWY-5104	L-isoleucine biosynthesis IV
Bphyt_1329	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Bphyt_1329	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Bphyt_1329	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Bphyt_1329	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Bphyt_1330	PWY-5101	L-isoleucine biosynthesis II
Bphyt_1330	PWY-5103	L-isoleucine biosynthesis III
Bphyt_1330	PWY-5104	L-isoleucine biosynthesis IV
Bphyt_1330	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Bphyt_1331	PWY-5669	phosphatidylethanolamine biosynthesis I
Bphyt_1332	PWY-5669	phosphatidylethanolamine biosynthesis I
Bphyt_1333	PWY-6871	3-methylbutanol biosynthesis
Bphyt_1335	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Bphyt_1335	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Bphyt_1335	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Bphyt_1335	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Bphyt_1341	PWY-1042	glycolysis IV (plant cytosol)
Bphyt_1341	PWY-5484	glycolysis II (from fructose 6-phosphate)
Bphyt_1341	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Bphyt_1341	PWY-7003	glycerol degradation to butanol
Bphyt_1355	PWY-3781	aerobic respiration I (cytochrome c)
Bphyt_1355	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Bphyt_1355	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Bphyt_1355	PWY-6692	Fe(II) oxidation
Bphyt_1371	PWY-1361	benzoyl-CoA degradation I (aerobic)
Bphyt_1371	PWY-5109	2-methylbutanoate biosynthesis
Bphyt_1371	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Bphyt_1371	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Bphyt_1371	PWY-5177	glutaryl-CoA degradation
Bphyt_1371	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Bphyt_1371	PWY-6435	4-hydroxybenzoate biosynthesis V
Bphyt_1371	PWY-6583	pyruvate fermentation to butanol I
Bphyt_1371	PWY-6863	pyruvate fermentation to hexanol
Bphyt_1371	PWY-6883	pyruvate fermentation to butanol II
Bphyt_1371	PWY-6944	androstenedione degradation
Bphyt_1371	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Bphyt_1371	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Bphyt_1371	PWY-7007	methyl ketone biosynthesis
Bphyt_1371	PWY-7046	4-coumarate degradation (anaerobic)
Bphyt_1371	PWY-7094	fatty acid salvage
Bphyt_1371	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Bphyt_1371	PWY-735	jasmonic acid biosynthesis
Bphyt_1371	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Bphyt_1395	PWY-5913	TCA cycle VI (obligate autotrophs)
Bphyt_1395	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
Bphyt_1395	PWY-6638	sulfolactate degradation III
Bphyt_1395	PWY-6642	(<i>R</i>)-cysteate degradation
Bphyt_1395	PWY-6643	coenzyme M biosynthesis II
Bphyt_1395	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Bphyt_1395	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Bphyt_1395	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Bphyt_1411	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Bphyt_1411	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Bphyt_1413	PWY-5392	reductive TCA cycle II
Bphyt_1413	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Bphyt_1413	PWY-5690	TCA cycle II (plants and fungi)
Bphyt_1413	PWY-5913	TCA cycle VI (obligate autotrophs)
Bphyt_1413	PWY-6728	methylaspartate cycle
Bphyt_1413	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Bphyt_1413	PWY-7254	TCA cycle VII (acetate-producers)
Bphyt_1413	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Bphyt_1416	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Bphyt_1416	PWY-7118	chitin degradation to ethanol
Bphyt_1431	PWY-4061	glutathione-mediated detoxification I
Bphyt_1431	PWY-6842	glutathione-mediated detoxification II
Bphyt_1431	PWY-7112	4-hydroxy-2-nonenal detoxification
Bphyt_1431	PWY-7533	gliotoxin biosynthesis
Bphyt_1467	PWY-5162	2-oxopentenoate degradation
Bphyt_1467	PWY-5436	L-threonine degradation IV
Bphyt_1467	PWY-5480	pyruvate fermentation to ethanol I
Bphyt_1467	PWY-6587	pyruvate fermentation to ethanol III
Bphyt_1467	PWY-7085	triethylamine degradation
Bphyt_1467	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Bphyt_1468	PWY-5162	2-oxopentenoate degradation
Bphyt_1471	PWY-5647	2-nitrobenzoate degradation I
Bphyt_1471	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Bphyt_1471	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Bphyt_1471	PWY-6505	L-tryptophan degradation XII (Geobacillus)
Bphyt_1473	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Bphyt_1473	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Bphyt_1500	PWY-3821	galactose degradation III
Bphyt_1500	PWY-6317	galactose degradation I (Leloir pathway)
Bphyt_1500	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Bphyt_1500	PWY-6527	stachyose degradation
Bphyt_1500	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Bphyt_1500	PWY-7344	UDP-D-galactose biosynthesis
Bphyt_1501	PWY-6749	CMP-legionaminate biosynthesis I
Bphyt_1508	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Bphyt_1508	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Bphyt_1508	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Bphyt_1508	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Bphyt_1516	PWY-5692	allantoin degradation to glyoxylate II
Bphyt_1516	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
Bphyt_1530	PWY-5028	L-histidine degradation II
Bphyt_1530	PWY-5030	L-histidine degradation III
Bphyt_1532	PWY-5028	L-histidine degradation II
Bphyt_1532	PWY-5030	L-histidine degradation III
Bphyt_1534	PWY-5028	L-histidine degradation II
Bphyt_1534	PWY-5030	L-histidine degradation III
Bphyt_1541	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Bphyt_1541	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Bphyt_1542	PWY-622	starch biosynthesis
Bphyt_1543	PWY-622	starch biosynthesis
Bphyt_1548	PWY-5331	taurine biosynthesis
Bphyt_1549	PWY-5350	thiosulfate disproportionation III (rhodanese)
Bphyt_1567	PWY-5451	acetone degradation I (to methylglyoxal)
Bphyt_1567	PWY-6588	pyruvate fermentation to acetone
Bphyt_1567	PWY-6876	isopropanol biosynthesis
Bphyt_1567	PWY-7466	acetone degradation III (to propane-1,2-diol)
Bphyt_1587	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
Bphyt_1609	PWY-5331	taurine biosynthesis
Bphyt_1640	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Bphyt_1641	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Bphyt_1642	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Bphyt_1642	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Bphyt_1669	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Bphyt_1669	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Bphyt_1709	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Bphyt_1709	PWY-5723	Rubisco shunt
Bphyt_1713	PWY-6655	xanthan biosynthesis
Bphyt_1713	PWY-6658	acetan biosynthesis
Bphyt_1722	PWY-5659	GDP-mannose biosynthesis
Bphyt_1722	PWY-6073	alginate biosynthesis I (algal)
Bphyt_1722	PWY-6082	alginate biosynthesis II (bacterial)
Bphyt_1722	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Bphyt_1730	PWY-5686	UMP biosynthesis
Bphyt_1758	PWY-5340	sulfate activation for sulfonation
Bphyt_1808	PWY-6823	molybdenum cofactor biosynthesis
Bphyt_1810	PWY-6823	molybdenum cofactor biosynthesis
Bphyt_1824	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Bphyt_1834	PWY-5381	pyridine nucleotide cycling (plants)
Bphyt_1834	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Bphyt_1834	PWY-6596	adenosine nucleotides degradation I
Bphyt_1834	PWY-6606	guanosine nucleotides degradation II
Bphyt_1834	PWY-6607	guanosine nucleotides degradation I
Bphyt_1834	PWY-6608	guanosine nucleotides degradation III
Bphyt_1834	PWY-7185	UTP and CTP dephosphorylation I
Bphyt_1845	PWY-5676	acetyl-CoA fermentation to butanoate II
Bphyt_1845	PWY-5741	ethylmalonyl-CoA pathway
Bphyt_1845	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Bphyt_1852	PWY-6936	seleno-amino acid biosynthesis
Bphyt_1873	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Bphyt_1875	PWY-7560	methylerythritol phosphate pathway II
Bphyt_1876	PWY-7560	methylerythritol phosphate pathway II
Bphyt_1884	PWY-5694	allantoin degradation to glyoxylate I
Bphyt_1884	PWY-5705	allantoin degradation to glyoxylate III
Bphyt_1914	PWY-3801	sucrose degradation II (sucrose synthase)
Bphyt_1914	PWY-5054	sorbitol biosynthesis I
Bphyt_1914	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Bphyt_1914	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Bphyt_1914	PWY-5659	GDP-mannose biosynthesis
Bphyt_1914	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Bphyt_1914	PWY-621	sucrose degradation III (sucrose invertase)
Bphyt_1914	PWY-622	starch biosynthesis
Bphyt_1914	PWY-6531	mannitol cycle
Bphyt_1914	PWY-6981	chitin biosynthesis
Bphyt_1914	PWY-7238	sucrose biosynthesis II
Bphyt_1914	PWY-7347	sucrose biosynthesis III
Bphyt_1914	PWY-7385	1,3-propanediol biosynthesis (engineered)
Bphyt_1915	PWY-6938	NADH repair
Bphyt_1917	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Bphyt_1917	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Bphyt_1917	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Bphyt_1926	PWY-1361	benzoyl-CoA degradation I (aerobic)
Bphyt_1926	PWY-5109	2-methylbutanoate biosynthesis
Bphyt_1926	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Bphyt_1926	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Bphyt_1926	PWY-5177	glutaryl-CoA degradation
Bphyt_1926	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Bphyt_1926	PWY-6435	4-hydroxybenzoate biosynthesis V
Bphyt_1926	PWY-6583	pyruvate fermentation to butanol I
Bphyt_1926	PWY-6863	pyruvate fermentation to hexanol
Bphyt_1926	PWY-6883	pyruvate fermentation to butanol II
Bphyt_1926	PWY-6944	androstenedione degradation
Bphyt_1926	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Bphyt_1926	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Bphyt_1926	PWY-7007	methyl ketone biosynthesis
Bphyt_1926	PWY-7046	4-coumarate degradation (anaerobic)
Bphyt_1926	PWY-7094	fatty acid salvage
Bphyt_1926	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Bphyt_1926	PWY-735	jasmonic acid biosynthesis
Bphyt_1926	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Bphyt_1939	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Bphyt_1939	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Bphyt_1939	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Bphyt_1939	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Bphyt_1939	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Bphyt_1939	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Bphyt_1954	PWY-5659	GDP-mannose biosynthesis
Bphyt_1954	PWY-6073	alginate biosynthesis I (algal)
Bphyt_1954	PWY-6082	alginate biosynthesis II (bacterial)
Bphyt_1954	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Bphyt_1955	PWY-6655	xanthan biosynthesis
Bphyt_1955	PWY-6658	acetan biosynthesis
Bphyt_1956	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Bphyt_1965	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Bphyt_1965	PWY-5739	GDP-D-perosamine biosynthesis
Bphyt_1965	PWY-5740	GDP-L-colitose biosynthesis
Bphyt_1965	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Bphyt_1973	PWY-3801	sucrose degradation II (sucrose synthase)
Bphyt_1973	PWY-6527	stachyose degradation
Bphyt_1973	PWY-6981	chitin biosynthesis
Bphyt_1973	PWY-7238	sucrose biosynthesis II
Bphyt_1973	PWY-7343	UDP-glucose biosynthesis
Bphyt_1977	PWY-6728	methylaspartate cycle
Bphyt_1977	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Bphyt_1977	PWY-7118	chitin degradation to ethanol
Bphyt_1977	PWY-7294	xylose degradation IV
Bphyt_1977	PWY-7295	L-arabinose degradation IV
Bphyt_1982	PWY-5194	siroheme biosynthesis
Bphyt_1982	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Bphyt_1983	PWY-6683	sulfate reduction III (assimilatory)
Bphyt_1993	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Bphyt_1993	PWY-7494	choline degradation IV
Bphyt_1997	PWY-5751	phenylethanol biosynthesis
Bphyt_2006	PWY-381	nitrate reduction II (assimilatory)
Bphyt_2006	PWY-5675	nitrate reduction V (assimilatory)
Bphyt_2006	PWY-6549	L-glutamine biosynthesis III
Bphyt_2006	PWY-6963	ammonia assimilation cycle I
Bphyt_2006	PWY-6964	ammonia assimilation cycle II
Bphyt_2027	PWY-3781	aerobic respiration I (cytochrome c)
Bphyt_2027	PWY-4521	arsenite oxidation I (respiratory)
Bphyt_2027	PWY-6692	Fe(II) oxidation
Bphyt_2027	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Bphyt_2035	PWY-5101	L-isoleucine biosynthesis II
Bphyt_2035	PWY-5103	L-isoleucine biosynthesis III
Bphyt_2035	PWY-5104	L-isoleucine biosynthesis IV
Bphyt_2035	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Bphyt_2041	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Bphyt_2047	PWY-5747	2-methylcitrate cycle II
Bphyt_2057	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Bphyt_2057	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Bphyt_2057	PWY-6454	vancomycin resistance I
Bphyt_2057	PWY-6901	superpathway of glucose and xylose degradation
Bphyt_2076	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Bphyt_2076	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Bphyt_2119	PWY-5101	L-isoleucine biosynthesis II
Bphyt_2119	PWY-5103	L-isoleucine biosynthesis III
Bphyt_2119	PWY-5104	L-isoleucine biosynthesis IV
Bphyt_2119	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Bphyt_2119	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Bphyt_2119	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Bphyt_2119	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Bphyt_2120	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Bphyt_2128	PWY-1042	glycolysis IV (plant cytosol)
Bphyt_2128	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Bphyt_2128	PWY-5484	glycolysis II (from fructose 6-phosphate)
Bphyt_2128	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Bphyt_2128	PWY-7385	1,3-propanediol biosynthesis (engineered)
Bphyt_2142	PWY-6832	2-aminoethylphosphonate degradation II
Bphyt_2146	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Bphyt_2146	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Bphyt_2146	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Bphyt_2146	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Bphyt_2151	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
Bphyt_2163	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Bphyt_2164	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Bphyt_2170	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Bphyt_2195	PWY-5129	sphingolipid biosynthesis (plants)
Bphyt_2200	PWY-5129	sphingolipid biosynthesis (plants)
Bphyt_2206	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Bphyt_2207	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Bphyt_2243	PWY-101	photosynthesis light reactions
Bphyt_2243	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Bphyt_2266	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
Bphyt_2311	PWY-6803	phosphatidylcholine acyl editing
Bphyt_2311	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
Bphyt_2311	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
Bphyt_2311	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Bphyt_2314	PWY-723	alkylnitronates degradation
Bphyt_2324	PWY-5691	urate degradation to allantoin I
Bphyt_2324	PWY-7394	urate degradation to allantoin II
Bphyt_2326	PWY-5694	allantoin degradation to glyoxylate I
Bphyt_2326	PWY-5705	allantoin degradation to glyoxylate III
Bphyt_2327	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
Bphyt_2328	PWY-5691	urate degradation to allantoin I
Bphyt_2328	PWY-7394	urate degradation to allantoin II
Bphyt_2330	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Bphyt_2330	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Bphyt_2365	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Bphyt_2412	PWY-5451	acetone degradation I (to methylglyoxal)
Bphyt_2412	PWY-6588	pyruvate fermentation to acetone
Bphyt_2412	PWY-6876	isopropanol biosynthesis
Bphyt_2412	PWY-7466	acetone degradation III (to propane-1,2-diol)
Bphyt_2429	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Bphyt_2431	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Bphyt_2431	PWY-6596	adenosine nucleotides degradation I
Bphyt_2431	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Bphyt_2438	PWY-5484	glycolysis II (from fructose 6-phosphate)
Bphyt_2444	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Bphyt_2444	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Bphyt_2444	PWY-5989	stearate biosynthesis II (bacteria and plants)
Bphyt_2444	PWY-5994	palmitate biosynthesis I (animals and fungi)
Bphyt_2444	PWY-6113	superpathway of mycolate biosynthesis
Bphyt_2444	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Bphyt_2444	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Bphyt_2444	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Bphyt_2444	PWYG-321	mycolate biosynthesis
Bphyt_2449	PWY-7560	methylerythritol phosphate pathway II
Bphyt_2477	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Bphyt_2479	PWY-6910	hydroxymethylpyrimidine salvage
Bphyt_2479	PWY-7356	thiamin salvage IV (yeast)
Bphyt_2479	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Bphyt_2486	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Bphyt_2489	PWY-7425	2-chloroacrylate degradation I
Bphyt_2490	PWY-6728	methylaspartate cycle
Bphyt_2490	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Bphyt_2490	PWY-7118	chitin degradation to ethanol
Bphyt_2490	PWY-7294	xylose degradation IV
Bphyt_2490	PWY-7295	L-arabinose degradation IV
Bphyt_2495	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Bphyt_2502	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Bphyt_2502	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Bphyt_2502	PWY-5989	stearate biosynthesis II (bacteria and plants)
Bphyt_2502	PWY-6113	superpathway of mycolate biosynthesis
Bphyt_2502	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Bphyt_2502	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Bphyt_2502	PWY-7096	triclosan resistance
Bphyt_2502	PWYG-321	mycolate biosynthesis
Bphyt_2506	PWY-2941	L-lysine biosynthesis II
Bphyt_2506	PWY-2942	L-lysine biosynthesis III
Bphyt_2506	PWY-5097	L-lysine biosynthesis VI
Bphyt_2506	PWY-6559	spermidine biosynthesis II
Bphyt_2506	PWY-6562	norspermidine biosynthesis
Bphyt_2506	PWY-7153	grixazone biosynthesis
Bphyt_2508	PWY-4381	fatty acid biosynthesis initiation I
Bphyt_2508	PWY-5743	3-hydroxypropanoate cycle
Bphyt_2508	PWY-5744	glyoxylate assimilation
Bphyt_2508	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Bphyt_2508	PWY-6679	jadomycin biosynthesis
Bphyt_2508	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Bphyt_2515	PWY-6936	seleno-amino acid biosynthesis
Bphyt_2515	PWY-7274	D-cycloserine biosynthesis
Bphyt_2518	PWY-2301	<i>myo</i>-inositol biosynthesis
Bphyt_2518	PWY-4702	phytate degradation I
Bphyt_2518	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
Bphyt_2530	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Bphyt_2541	PWY-7560	methylerythritol phosphate pathway II
Bphyt_2544	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Bphyt_2544	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Bphyt_2544	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Bphyt_2544	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Bphyt_2544	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Bphyt_2544	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Bphyt_2544	PWY-7205	CMP phosphorylation
Bphyt_2544	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Bphyt_2544	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Bphyt_2544	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Bphyt_2544	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Bphyt_2544	PWY-7224	purine deoxyribonucleosides salvage
Bphyt_2544	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Bphyt_2544	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Bphyt_2548	PWY-2941	L-lysine biosynthesis II
Bphyt_2548	PWY-2942	L-lysine biosynthesis III
Bphyt_2548	PWY-5097	L-lysine biosynthesis VI
Bphyt_2560	PWY-1042	glycolysis IV (plant cytosol)
Bphyt_2560	PWY-1622	formaldehyde assimilation I (serine pathway)
Bphyt_2560	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Bphyt_2560	PWY-5484	glycolysis II (from fructose 6-phosphate)
Bphyt_2560	PWY-5723	Rubisco shunt
Bphyt_2560	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Bphyt_2560	PWY-6886	1-butanol autotrophic biosynthesis
Bphyt_2560	PWY-6901	superpathway of glucose and xylose degradation
Bphyt_2560	PWY-7003	glycerol degradation to butanol
Bphyt_2560	PWY-7124	ethylene biosynthesis V (engineered)
Bphyt_2560	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Bphyt_2561	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Bphyt_2561	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Bphyt_2562	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Bphyt_2562	PWY-7177	UTP and CTP dephosphorylation II
Bphyt_2562	PWY-7185	UTP and CTP dephosphorylation I
Bphyt_2579	PWY-6823	molybdenum cofactor biosynthesis
Bphyt_2579	PWY-6891	thiazole biosynthesis II (Bacillus)
Bphyt_2579	PWY-6892	thiazole biosynthesis I (E. coli)
Bphyt_2579	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Bphyt_2589	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Bphyt_2589	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Bphyt_2591	PWY-6891	thiazole biosynthesis II (Bacillus)
Bphyt_2591	PWY-6892	thiazole biosynthesis I (E. coli)
Bphyt_2591	PWY-7560	methylerythritol phosphate pathway II
Bphyt_2595	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Bphyt_2595	PWY-2201	folate transformations I
Bphyt_2595	PWY-3841	folate transformations II
Bphyt_2595	PWY-5030	L-histidine degradation III
Bphyt_2595	PWY-5497	purine nucleobases degradation II (anaerobic)
Bphyt_2595	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Bphyt_2599	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Bphyt_2599	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Bphyt_2615	PWY-381	nitrate reduction II (assimilatory)
Bphyt_2615	PWY-5675	nitrate reduction V (assimilatory)
Bphyt_2615	PWY-6549	L-glutamine biosynthesis III
Bphyt_2615	PWY-6963	ammonia assimilation cycle I
Bphyt_2615	PWY-6964	ammonia assimilation cycle II
Bphyt_2623	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Bphyt_2670	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Bphyt_2683	PWY-6871	3-methylbutanol biosynthesis
Bphyt_2687	PWY-3982	uracil degradation I (reductive)
Bphyt_2687	PWY-6430	thymine degradation
Bphyt_2694	PWY-101	photosynthesis light reactions
Bphyt_2694	PWY-1361	benzoyl-CoA degradation I (aerobic)
Bphyt_2694	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Bphyt_2695	PWY-1361	benzoyl-CoA degradation I (aerobic)
Bphyt_2696	PWY-1361	benzoyl-CoA degradation I (aerobic)
Bphyt_2697	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Bphyt_2723	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Bphyt_2736	PWY-1361	benzoyl-CoA degradation I (aerobic)
Bphyt_2736	PWY-5109	2-methylbutanoate biosynthesis
Bphyt_2736	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Bphyt_2736	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Bphyt_2736	PWY-5177	glutaryl-CoA degradation
Bphyt_2736	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Bphyt_2736	PWY-6435	4-hydroxybenzoate biosynthesis V
Bphyt_2736	PWY-6583	pyruvate fermentation to butanol I
Bphyt_2736	PWY-6863	pyruvate fermentation to hexanol
Bphyt_2736	PWY-6883	pyruvate fermentation to butanol II
Bphyt_2736	PWY-6944	androstenedione degradation
Bphyt_2736	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Bphyt_2736	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Bphyt_2736	PWY-7007	methyl ketone biosynthesis
Bphyt_2736	PWY-7046	4-coumarate degradation (anaerobic)
Bphyt_2736	PWY-7094	fatty acid salvage
Bphyt_2736	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Bphyt_2736	PWY-735	jasmonic acid biosynthesis
Bphyt_2736	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Bphyt_2767	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Bphyt_2770	PWY-5344	L-homocysteine biosynthesis
Bphyt_2770	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Bphyt_2774	PWY-6785	hydrogen production VIII
Bphyt_2776	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Bphyt_2776	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Bphyt_2795	PWY-3941	&beta;-alanine biosynthesis II
Bphyt_2795	PWY-5104	L-isoleucine biosynthesis IV
Bphyt_2795	PWY-5747	2-methylcitrate cycle II
Bphyt_2796	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Bphyt_2796	PWY-6153	autoinducer AI-2 biosynthesis I
Bphyt_2796	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
Bphyt_2800	PWY-3801	sucrose degradation II (sucrose synthase)
Bphyt_2800	PWY-6527	stachyose degradation
Bphyt_2800	PWY-6981	chitin biosynthesis
Bphyt_2800	PWY-7238	sucrose biosynthesis II
Bphyt_2800	PWY-7343	UDP-glucose biosynthesis
Bphyt_2812	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Bphyt_2827	PWY-4041	&gamma;-glutamyl cycle
Bphyt_2827	PWY-5826	hypoglycin biosynthesis
Bphyt_2828	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Bphyt_2860	PWY-6749	CMP-legionaminate biosynthesis I
Bphyt_2861	PWY-6614	tetrahydrofolate biosynthesis
Bphyt_2867	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Bphyt_2867	PWY-5686	UMP biosynthesis
Bphyt_2867	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Bphyt_2868	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Bphyt_2868	PWY-5686	UMP biosynthesis
Bphyt_2868	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Bphyt_2871	PWY-5386	methylglyoxal degradation I
Bphyt_2888	PWY-5269	cardiolipin biosynthesis II
Bphyt_2888	PWY-5668	cardiolipin biosynthesis I
Bphyt_2894	PWY-6902	chitin degradation II
Bphyt_2895	PWY-6012	acyl carrier protein metabolism I
Bphyt_2895	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Bphyt_2910	PWY-5367	petroselinate biosynthesis
Bphyt_2910	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Bphyt_2910	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Bphyt_2910	PWY-5989	stearate biosynthesis II (bacteria and plants)
Bphyt_2910	PWY-5994	palmitate biosynthesis I (animals and fungi)
Bphyt_2910	PWY-6113	superpathway of mycolate biosynthesis
Bphyt_2910	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Bphyt_2910	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Bphyt_2910	PWY-6951	Bphyt_2910
Bphyt_2910	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Bphyt_2910	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Bphyt_2910	PWYG-321	mycolate biosynthesis
Bphyt_2911	PWY-4381	fatty acid biosynthesis initiation I
Bphyt_2911	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Bphyt_2911	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Bphyt_2912	PWY-4381	fatty acid biosynthesis initiation I
Bphyt_2923	PWY-6823	molybdenum cofactor biosynthesis
Bphyt_2924	PWY-5964	guanylyl molybdenum cofactor biosynthesis
Bphyt_2925	PWY-6823	molybdenum cofactor biosynthesis
Bphyt_2932	PWY-5381	pyridine nucleotide cycling (plants)
Bphyt_2947	PWY-5392	reductive TCA cycle II
Bphyt_2947	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Bphyt_2947	PWY-5690	TCA cycle II (plants and fungi)
Bphyt_2947	PWY-5913	TCA cycle VI (obligate autotrophs)
Bphyt_2947	PWY-6728	methylaspartate cycle
Bphyt_2947	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Bphyt_2947	PWY-7254	TCA cycle VII (acetate-producers)
Bphyt_2947	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Bphyt_2954	PWY-3841	folate transformations II
Bphyt_2954	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Bphyt_2954	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Bphyt_2954	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Bphyt_2954	PWY-7199	pyrimidine deoxyribonucleosides salvage
Bphyt_2954	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Bphyt_2964	PWY-3841	folate transformations II
Bphyt_2964	PWY-6614	tetrahydrofolate biosynthesis
Bphyt_2975	PWY-6829	tRNA methylation (yeast)
Bphyt_2975	PWY-7285	methylwyosine biosynthesis
Bphyt_2975	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Bphyt_2993	PWY-6936	seleno-amino acid biosynthesis
Bphyt_2997	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Bphyt_3002	PWY-7205	CMP phosphorylation
Bphyt_3003	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Bphyt_3006	PWY-3461	L-tyrosine biosynthesis II
Bphyt_3006	PWY-3462	L-phenylalanine biosynthesis II
Bphyt_3006	PWY-6120	L-tyrosine biosynthesis III
Bphyt_3006	PWY-6627	salinosporamide A biosynthesis
Bphyt_3006	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Bphyt_3011	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
Bphyt_3011	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
Bphyt_3011	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
Bphyt_3011	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
Bphyt_3011	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
Bphyt_3011	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
Bphyt_3011	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
Bphyt_3011	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
Bphyt_3011	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Bphyt_3011	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
Bphyt_3012	PWY-181	photorespiration
Bphyt_3023	PWY-1881	formate oxidation to CO<sub>2</sub>
Bphyt_3023	PWY-5497	purine nucleobases degradation II (anaerobic)
Bphyt_3023	PWY-6696	oxalate degradation III
Bphyt_3039	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Bphyt_3041	PWY-5497	purine nucleobases degradation II (anaerobic)
Bphyt_3041	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Bphyt_3041	PWY-6538	caffeine degradation III (bacteria, via demethylation)
Bphyt_3041	PWY-6596	adenosine nucleotides degradation I
Bphyt_3041	PWY-6606	guanosine nucleotides degradation II
Bphyt_3041	PWY-6607	guanosine nucleotides degradation I
Bphyt_3041	PWY-6608	guanosine nucleotides degradation III
Bphyt_3041	PWY-6999	theophylline degradation
Bphyt_3042	PWY-5497	purine nucleobases degradation II (anaerobic)
Bphyt_3042	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Bphyt_3042	PWY-6538	caffeine degradation III (bacteria, via demethylation)
Bphyt_3042	PWY-6596	adenosine nucleotides degradation I
Bphyt_3042	PWY-6606	guanosine nucleotides degradation II
Bphyt_3042	PWY-6607	guanosine nucleotides degradation I
Bphyt_3042	PWY-6608	guanosine nucleotides degradation III
Bphyt_3042	PWY-6999	theophylline degradation
Bphyt_3044	PWY-6610	adenine and adenosine salvage IV
Bphyt_3045	PWY-5497	purine nucleobases degradation II (anaerobic)
Bphyt_3045	PWY-6606	guanosine nucleotides degradation II
Bphyt_3045	PWY-6608	guanosine nucleotides degradation III
Bphyt_3045	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Bphyt_3047	PWY-5839	menaquinol-7 biosynthesis
Bphyt_3047	PWY-5844	menaquinol-9 biosynthesis
Bphyt_3047	PWY-5849	menaquinol-6 biosynthesis
Bphyt_3047	PWY-5890	menaquinol-10 biosynthesis
Bphyt_3047	PWY-5891	menaquinol-11 biosynthesis
Bphyt_3047	PWY-5892	menaquinol-12 biosynthesis
Bphyt_3047	PWY-5895	menaquinol-13 biosynthesis
Bphyt_3052	PWY-5367	petroselinate biosynthesis
Bphyt_3052	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Bphyt_3052	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Bphyt_3052	PWY-5989	stearate biosynthesis II (bacteria and plants)
Bphyt_3052	PWY-5994	palmitate biosynthesis I (animals and fungi)
Bphyt_3052	PWY-6113	superpathway of mycolate biosynthesis
Bphyt_3052	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Bphyt_3052	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Bphyt_3052	PWY-6951	Bphyt_3052
Bphyt_3052	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Bphyt_3052	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Bphyt_3052	PWYG-321	mycolate biosynthesis
Bphyt_3053	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Bphyt_3053	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Bphyt_3053	PWY-5989	stearate biosynthesis II (bacteria and plants)
Bphyt_3053	PWY-5994	palmitate biosynthesis I (animals and fungi)
Bphyt_3053	PWY-6113	superpathway of mycolate biosynthesis
Bphyt_3053	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Bphyt_3053	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Bphyt_3053	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Bphyt_3053	PWYG-321	mycolate biosynthesis
Bphyt_3060	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Bphyt_3060	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Bphyt_3060	PWY-5989	stearate biosynthesis II (bacteria and plants)
Bphyt_3060	PWY-5994	palmitate biosynthesis I (animals and fungi)
Bphyt_3060	PWY-6113	superpathway of mycolate biosynthesis
Bphyt_3060	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Bphyt_3060	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Bphyt_3060	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Bphyt_3060	PWYG-321	mycolate biosynthesis
Bphyt_3071	PWY-5484	glycolysis II (from fructose 6-phosphate)
Bphyt_3076	PWY-3461	L-tyrosine biosynthesis II
Bphyt_3076	PWY-3462	L-phenylalanine biosynthesis II
Bphyt_3076	PWY-6120	L-tyrosine biosynthesis III
Bphyt_3076	PWY-6627	salinosporamide A biosynthesis
Bphyt_3085	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Bphyt_3088	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Bphyt_3098	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Bphyt_3100	PWY-6167	flavin biosynthesis II (archaea)
Bphyt_3100	PWY-6168	flavin biosynthesis III (fungi)
Bphyt_3100	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Bphyt_3101	PWY-6167	flavin biosynthesis II (archaea)
Bphyt_3101	PWY-6168	flavin biosynthesis III (fungi)
Bphyt_3101	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Bphyt_3102	PWY-6167	flavin biosynthesis II (archaea)
Bphyt_3102	PWY-6168	flavin biosynthesis III (fungi)
Bphyt_3127	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Bphyt_3146	PWY-7560	methylerythritol phosphate pathway II
Bphyt_3151	PWY-5316	nicotine biosynthesis
Bphyt_3151	PWY-7342	superpathway of nicotine biosynthesis
Bphyt_3152	PWY-5316	nicotine biosynthesis
Bphyt_3152	PWY-5381	pyridine nucleotide cycling (plants)
Bphyt_3152	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Bphyt_3152	PWY-7342	superpathway of nicotine biosynthesis
Bphyt_3153	PWY-5316	nicotine biosynthesis
Bphyt_3153	PWY-7342	superpathway of nicotine biosynthesis
Bphyt_3157	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Bphyt_3157	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Bphyt_3158	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Bphyt_3158	PWY-6167	flavin biosynthesis II (archaea)
Bphyt_3158	PWY-6168	flavin biosynthesis III (fungi)
Bphyt_3163	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Bphyt_3163	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Bphyt_3163	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Bphyt_3163	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Bphyt_3169	PWY-5913	TCA cycle VI (obligate autotrophs)
Bphyt_3169	PWY-6549	L-glutamine biosynthesis III
Bphyt_3169	PWY-6728	methylaspartate cycle
Bphyt_3169	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Bphyt_3169	PWY-7124	ethylene biosynthesis V (engineered)
Bphyt_3169	PWY-7254	TCA cycle VII (acetate-producers)
Bphyt_3169	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Bphyt_3194	PWY-6854	ethylene biosynthesis III (microbes)
Bphyt_3198	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Bphyt_3198	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Bphyt_3199	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Bphyt_3205	PWY-4981	L-proline biosynthesis II (from arginine)
Bphyt_3205	PWY-4984	urea cycle
Bphyt_3205	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Bphyt_3206	PWY-4983	L-citrulline-nitric oxide cycle
Bphyt_3206	PWY-4984	urea cycle
Bphyt_3206	PWY-5	canavanine biosynthesis
Bphyt_3206	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Bphyt_3206	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Bphyt_3207	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Bphyt_3207	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Bphyt_3221	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Bphyt_3221	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Bphyt_3227	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Bphyt_3227	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Bphyt_3228	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Bphyt_3228	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Bphyt_3232	PWY-4261	glycerol degradation I
Bphyt_3239	PWY-4261	glycerol degradation I
Bphyt_3252	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Bphyt_3253	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Bphyt_3253	PWY-3162	L-tryptophan degradation V (side chain pathway)
Bphyt_3253	PWY-5057	L-valine degradation II
Bphyt_3253	PWY-5076	L-leucine degradation III
Bphyt_3253	PWY-5078	L-isoleucine degradation II
Bphyt_3253	PWY-5079	L-phenylalanine degradation III
Bphyt_3253	PWY-5082	L-methionine degradation III
Bphyt_3253	PWY-5480	pyruvate fermentation to ethanol I
Bphyt_3253	PWY-5486	pyruvate fermentation to ethanol II
Bphyt_3253	PWY-5751	phenylethanol biosynthesis
Bphyt_3253	PWY-6028	acetoin degradation
Bphyt_3253	PWY-6313	serotonin degradation
Bphyt_3253	PWY-6333	acetaldehyde biosynthesis I
Bphyt_3253	PWY-6342	noradrenaline and adrenaline degradation
Bphyt_3253	PWY-6587	pyruvate fermentation to ethanol III
Bphyt_3253	PWY-6802	salidroside biosynthesis
Bphyt_3253	PWY-6871	3-methylbutanol biosynthesis
Bphyt_3253	PWY-7013	L-1,2-propanediol degradation
Bphyt_3253	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Bphyt_3253	PWY-7118	chitin degradation to ethanol
Bphyt_3253	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Bphyt_3253	PWY-7557	dehydrodiconiferyl alcohol degradation
Bphyt_3254	PWY-4261	glycerol degradation I
Bphyt_3268	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Bphyt_3268	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Bphyt_3273	PWY-6123	inosine-5'-phosphate biosynthesis I
Bphyt_3273	PWY-7234	inosine-5'-phosphate biosynthesis III
Bphyt_3274	PWY-6123	inosine-5'-phosphate biosynthesis I
Bphyt_3274	PWY-6124	inosine-5'-phosphate biosynthesis II
Bphyt_3274	PWY-7234	inosine-5'-phosphate biosynthesis III
Bphyt_3275	PWY-1042	glycolysis IV (plant cytosol)
Bphyt_3275	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Bphyt_3275	PWY-5484	glycolysis II (from fructose 6-phosphate)
Bphyt_3275	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Bphyt_3275	PWY-7385	1,3-propanediol biosynthesis (engineered)
Bphyt_3276	PWY-1042	glycolysis IV (plant cytosol)
Bphyt_3276	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Bphyt_3276	PWY-5484	glycolysis II (from fructose 6-phosphate)
Bphyt_3276	PWY-5723	Rubisco shunt
Bphyt_3276	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Bphyt_3276	PWY-6886	1-butanol autotrophic biosynthesis
Bphyt_3276	PWY-6901	superpathway of glucose and xylose degradation
Bphyt_3276	PWY-7003	glycerol degradation to butanol
Bphyt_3276	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Bphyt_3276	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Bphyt_3277	PWY-1042	glycolysis IV (plant cytosol)
Bphyt_3277	PWY-5484	glycolysis II (from fructose 6-phosphate)
Bphyt_3277	PWY-6886	1-butanol autotrophic biosynthesis
Bphyt_3277	PWY-6901	superpathway of glucose and xylose degradation
Bphyt_3277	PWY-7003	glycerol degradation to butanol
Bphyt_3280	PWY-5057	L-valine degradation II
Bphyt_3280	PWY-5076	L-leucine degradation III
Bphyt_3280	PWY-5078	L-isoleucine degradation II
Bphyt_3280	PWY-5101	L-isoleucine biosynthesis II
Bphyt_3280	PWY-5103	L-isoleucine biosynthesis III
Bphyt_3280	PWY-5104	L-isoleucine biosynthesis IV
Bphyt_3280	PWY-5108	L-isoleucine biosynthesis V
Bphyt_3291	PWY-5392	reductive TCA cycle II
Bphyt_3291	PWY-5537	pyruvate fermentation to acetate V
Bphyt_3291	PWY-5538	pyruvate fermentation to acetate VI
Bphyt_3291	PWY-5690	TCA cycle II (plants and fungi)
Bphyt_3291	PWY-5913	TCA cycle VI (obligate autotrophs)
Bphyt_3291	PWY-6728	methylaspartate cycle
Bphyt_3291	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Bphyt_3291	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Bphyt_3292	PWY-5392	reductive TCA cycle II
Bphyt_3292	PWY-5537	pyruvate fermentation to acetate V
Bphyt_3292	PWY-5538	pyruvate fermentation to acetate VI
Bphyt_3292	PWY-5690	TCA cycle II (plants and fungi)
Bphyt_3292	PWY-5913	TCA cycle VI (obligate autotrophs)
Bphyt_3292	PWY-6728	methylaspartate cycle
Bphyt_3292	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Bphyt_3292	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Bphyt_3313	PWY-5147	oleate biosynthesis I (plants)
Bphyt_3315	PWY-4041	&gamma;-glutamyl cycle
Bphyt_3315	PWY-5826	hypoglycin biosynthesis
Bphyt_3320	PWY-4261	glycerol degradation I
Bphyt_3320	PWY-6118	glycerol-3-phosphate shuttle
Bphyt_3320	PWY-6952	glycerophosphodiester degradation
Bphyt_3321	PWY-4261	glycerol degradation I
Bphyt_3324	PWY-6167	flavin biosynthesis II (archaea)
Bphyt_3324	PWY-6168	flavin biosynthesis III (fungi)
Bphyt_3341	PWY-6123	inosine-5'-phosphate biosynthesis I
Bphyt_3341	PWY-6124	inosine-5'-phosphate biosynthesis II
Bphyt_3341	PWY-7234	inosine-5'-phosphate biosynthesis III
Bphyt_3357	PWY-5686	UMP biosynthesis
Bphyt_3366	PWY-6123	inosine-5'-phosphate biosynthesis I
Bphyt_3366	PWY-6124	inosine-5'-phosphate biosynthesis II
Bphyt_3366	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Bphyt_3366	PWY-7234	inosine-5'-phosphate biosynthesis III
Bphyt_3367	PWY-5530	sorbitol biosynthesis II
Bphyt_3367	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Bphyt_3369	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Bphyt_3369	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Bphyt_3369	PWY-7242	D-fructuronate degradation
Bphyt_3369	PWY-7310	D-glucosaminate degradation
Bphyt_3370	PWY-5101	L-isoleucine biosynthesis II
Bphyt_3370	PWY-5103	L-isoleucine biosynthesis III
Bphyt_3370	PWY-5104	L-isoleucine biosynthesis IV
Bphyt_3370	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Bphyt_3383	PWY-2941	L-lysine biosynthesis II
Bphyt_3383	PWY-2942	L-lysine biosynthesis III
Bphyt_3383	PWY-5097	L-lysine biosynthesis VI
Bphyt_3386	PWY-5694	allantoin degradation to glyoxylate I
Bphyt_3386	PWY-5705	allantoin degradation to glyoxylate III
Bphyt_3387	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
Bphyt_3390	PWY-1042	glycolysis IV (plant cytosol)
Bphyt_3390	PWY-5484	glycolysis II (from fructose 6-phosphate)
Bphyt_3390	PWY-6901	superpathway of glucose and xylose degradation
Bphyt_3390	PWY-7003	glycerol degradation to butanol
Bphyt_3391	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Bphyt_3391	PWY-5723	Rubisco shunt
Bphyt_3391	PWY-6891	thiazole biosynthesis II (Bacillus)
Bphyt_3391	PWY-6892	thiazole biosynthesis I (E. coli)
Bphyt_3391	PWY-6901	superpathway of glucose and xylose degradation
Bphyt_3391	PWY-7560	methylerythritol phosphate pathway II
Bphyt_3399	PWY-1281	sulfoacetaldehyde degradation I
Bphyt_3399	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Bphyt_3399	PWY-5482	pyruvate fermentation to acetate II
Bphyt_3399	PWY-5485	pyruvate fermentation to acetate IV
Bphyt_3399	PWY-5497	purine nucleobases degradation II (anaerobic)
Bphyt_3399	PWY-6637	sulfolactate degradation II
Bphyt_3399	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Bphyt_3400	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Bphyt_3400	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Bphyt_3400	PWY-6896	thiamin salvage I
Bphyt_3400	PWY-6897	thiamin salvage II
Bphyt_3404	PWY-5686	UMP biosynthesis
Bphyt_3413	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Bphyt_3413	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Bphyt_3413	PWY-7242	D-fructuronate degradation
Bphyt_3413	PWY-7310	D-glucosaminate degradation
Bphyt_3414	PWY-7130	L-glucose degradation
Bphyt_3419	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Bphyt_3425	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Bphyt_3425	PWY-6416	quinate degradation II
Bphyt_3425	PWY-6707	gallate biosynthesis
Bphyt_3435	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Bphyt_3435	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Bphyt_3435	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Bphyt_3435	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Bphyt_3435	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Bphyt_3435	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Bphyt_3435	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Bphyt_3435	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Bphyt_3436	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Bphyt_3436	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Bphyt_3436	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Bphyt_3436	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Bphyt_3436	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Bphyt_3436	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Bphyt_3436	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Bphyt_3436	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Bphyt_3458	PWY-6502	oxidized GTP and dGTP detoxification
Bphyt_3460	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Bphyt_3468	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Bphyt_3468	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Bphyt_3469	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Bphyt_3469	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Bphyt_3470	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Bphyt_3470	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Bphyt_3470	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Bphyt_3470	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Bphyt_3472	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Bphyt_3472	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Bphyt_3473	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Bphyt_3473	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Bphyt_3473	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Bphyt_3474	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Bphyt_3474	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Bphyt_3487	PWY-1361	benzoyl-CoA degradation I (aerobic)
Bphyt_3487	PWY-2361	3-oxoadipate degradation
Bphyt_3487	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
Bphyt_3490	PWY-1341	phenylacetate degradation II (anaerobic)
Bphyt_3490	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
Bphyt_3494	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Bphyt_3494	PWY-5723	Rubisco shunt
Bphyt_3495	PWY-181	photorespiration
Bphyt_3496	PWY-5958	acridone alkaloid biosynthesis
Bphyt_3496	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Bphyt_3496	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Bphyt_3497	PWY-5958	acridone alkaloid biosynthesis
Bphyt_3497	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Bphyt_3497	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Bphyt_3521	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Bphyt_3544	PWY-3781	aerobic respiration I (cytochrome c)
Bphyt_3544	PWY-6692	Fe(II) oxidation
Bphyt_3544	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
Bphyt_3544	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Bphyt_3545	PWY-5663	tetrahydrobiopterin biosynthesis I
Bphyt_3545	PWY-5664	tetrahydrobiopterin biosynthesis II
Bphyt_3545	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Bphyt_3545	PWY-6703	preQ<sub>0</sub> biosynthesis
Bphyt_3545	PWY-6983	tetrahydrobiopterin biosynthesis III
Bphyt_3545	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Bphyt_3562	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Bphyt_3562	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Bphyt_3572	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Bphyt_3572	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Bphyt_3572	PWY-6897	thiamin salvage II
Bphyt_3572	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Bphyt_3572	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Bphyt_3572	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Bphyt_3572	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Bphyt_3573	PWY-6891	thiazole biosynthesis II (Bacillus)
Bphyt_3573	PWY-6892	thiazole biosynthesis I (E. coli)
Bphyt_3597	PWY-6164	3-dehydroquinate biosynthesis I
Bphyt_3598	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Bphyt_3606	PWY-2941	L-lysine biosynthesis II
Bphyt_3606	PWY-2942	L-lysine biosynthesis III
Bphyt_3606	PWY-5097	L-lysine biosynthesis VI
Bphyt_3613	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Bphyt_3613	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Bphyt_3674	PWY-1281	sulfoacetaldehyde degradation I
Bphyt_3674	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Bphyt_3674	PWY-5482	pyruvate fermentation to acetate II
Bphyt_3674	PWY-5485	pyruvate fermentation to acetate IV
Bphyt_3674	PWY-5497	purine nucleobases degradation II (anaerobic)
Bphyt_3674	PWY-6637	sulfolactate degradation II
Bphyt_3674	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Bphyt_3676	PWY-5686	UMP biosynthesis
Bphyt_3680	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Bphyt_3680	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Bphyt_3705	PWY-4621	arsenate detoxification II (glutaredoxin)
Bphyt_3728	PWY-6749	CMP-legionaminate biosynthesis I
Bphyt_3729	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Bphyt_3731	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Bphyt_3731	PWY-6148	tetrahydromethanopterin biosynthesis
Bphyt_3731	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Bphyt_3731	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Bphyt_3756	PWY-2201	folate transformations I
Bphyt_3756	PWY-3841	folate transformations II
Bphyt_3758	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Bphyt_3762	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Bphyt_3762	PWY-7494	choline degradation IV
Bphyt_3773	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Bphyt_3837	PWY-4381	fatty acid biosynthesis initiation I
Bphyt_3839	PWY-4381	fatty acid biosynthesis initiation I
Bphyt_3883	PWY-6986	alginate degradation
Bphyt_3887	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
Bphyt_3887	PWY-6853	ethylene biosynthesis II (microbes)
Bphyt_3887	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Bphyt_3890	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Bphyt_3890	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Bphyt_3894	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Bphyt_3896	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Bphyt_3916	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Bphyt_3916	PWY-7494	choline degradation IV
Bphyt_3917	PWY-5642	2,4-dinitrotoluene degradation
Bphyt_3917	PWY-6373	acrylate degradation
Bphyt_3921	PWY-6134	L-tyrosine biosynthesis IV
Bphyt_3921	PWY-7158	L-phenylalanine degradation V
Bphyt_3922	PWY-7158	L-phenylalanine degradation V
Bphyt_3930	PWY-6840	homoglutathione biosynthesis
Bphyt_3930	PWY-7255	ergothioneine biosynthesis I (bacteria)
Bphyt_3953	PWY-6840	homoglutathione biosynthesis
Bphyt_3953	PWY-7255	ergothioneine biosynthesis I (bacteria)
Bphyt_3963	PWY-5101	L-isoleucine biosynthesis II
Bphyt_3963	PWY-5103	L-isoleucine biosynthesis III
Bphyt_3963	PWY-5104	L-isoleucine biosynthesis IV
Bphyt_3963	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Bphyt_3972	PWY-6891	thiazole biosynthesis II (Bacillus)
Bphyt_3972	PWY-6892	thiazole biosynthesis I (E. coli)
Bphyt_3972	PWY-7560	methylerythritol phosphate pathway II