Cj0013	PWY-5101	L-isoleucine biosynthesis II
Cj0013	PWY-5103	L-isoleucine biosynthesis III
Cj0013	PWY-5104	L-isoleucine biosynthesis IV
Cj0013	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cj0016	PWY-6703	preQ<sub>0</sub> biosynthesis
Cj0023	PWY-6123	inosine-5'-phosphate biosynthesis I
Cj0023	PWY-6124	inosine-5'-phosphate biosynthesis II
Cj0023	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cj0023	PWY-7234	inosine-5'-phosphate biosynthesis III
Cj0024	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cj0024	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cj0024	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cj0024	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cj0024	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cj0024	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cj0024	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cj0024	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Cj0026c	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cj0027	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Cj0027	PWY-7177	UTP and CTP dephosphorylation II
Cj0027	PWY-7185	UTP and CTP dephosphorylation I
Cj0065c	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cj0065c	PWY-6148	tetrahydromethanopterin biosynthesis
Cj0065c	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Cj0065c	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Cj0066c	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cj0066c	PWY-6416	quinate degradation II
Cj0066c	PWY-6707	gallate biosynthesis
Cj0085c	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cj0085c	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cj0087	PWY-5392	reductive TCA cycle II
Cj0087	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cj0087	PWY-5690	TCA cycle II (plants and fungi)
Cj0087	PWY-5913	TCA cycle VI (obligate autotrophs)
Cj0087	PWY-6728	methylaspartate cycle
Cj0087	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cj0087	PWY-7254	TCA cycle VII (acetate-producers)
Cj0087	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cj0099	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Cj0099	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Cj0105	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cj0107	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cj0116	PWY-4381	fatty acid biosynthesis initiation I
Cj0116	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Cj0116	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cj0117	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Cj0117	PWY-6153	autoinducer AI-2 biosynthesis I
Cj0117	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
Cj0127c	PWY-4381	fatty acid biosynthesis initiation I
Cj0127c	PWY-5743	3-hydroxypropanoate cycle
Cj0127c	PWY-5744	glyoxylate assimilation
Cj0127c	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cj0127c	PWY-6679	jadomycin biosynthesis
Cj0127c	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cj0130	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
Cj0134	PWY-702	L-methionine biosynthesis II
Cj0160c	PWY-6703	preQ<sub>0</sub> biosynthesis
Cj0161c	PWY-6823	molybdenum cofactor biosynthesis
Cj0166	PWY-2781	<i>cis</i>-zeatin biosynthesis
Cj0169	PWY-6854	ethylene biosynthesis III (microbes)
Cj0187c	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cj0187c	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Cj0188c	PWY-6938	NADH repair
Cj0194	PWY-5663	tetrahydrobiopterin biosynthesis I
Cj0194	PWY-5664	tetrahydrobiopterin biosynthesis II
Cj0194	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cj0194	PWY-6703	preQ<sub>0</sub> biosynthesis
Cj0194	PWY-6983	tetrahydrobiopterin biosynthesis III
Cj0194	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Cj0195	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cj0196c	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cj0196c	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cj0196c	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cj0196c	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cj0197c	PWY-2941	L-lysine biosynthesis II
Cj0197c	PWY-2942	L-lysine biosynthesis III
Cj0197c	PWY-5097	L-lysine biosynthesis VI
Cj0224	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cj0224	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cj0226	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cj0226	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cj0230c	PWY-5381	pyridine nucleotide cycling (plants)
Cj0231c	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cj0231c	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cj0231c	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cj0231c	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cj0231c	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cj0231c	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cj0231c	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cj0231c	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Cj0233c	PWY-5686	UMP biosynthesis
Cj0237	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Cj0237	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cj0237	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cj0237	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Cj0240c	PWY-6823	molybdenum cofactor biosynthesis
Cj0240c	PWY-6891	thiazole biosynthesis II (Bacillus)
Cj0240c	PWY-6892	thiazole biosynthesis I (E. coli)
Cj0240c	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Cj0257	PWY-7039	phosphatidate metabolism, as a signaling molecule
Cj0259	PWY-5686	UMP biosynthesis
Cj0269c	PWY-5057	L-valine degradation II
Cj0269c	PWY-5076	L-leucine degradation III
Cj0269c	PWY-5078	L-isoleucine degradation II
Cj0269c	PWY-5101	L-isoleucine biosynthesis II
Cj0269c	PWY-5103	L-isoleucine biosynthesis III
Cj0269c	PWY-5104	L-isoleucine biosynthesis IV
Cj0269c	PWY-5108	L-isoleucine biosynthesis V
Cj0273	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Cj0273	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Cj0273	PWY-5989	stearate biosynthesis II (bacteria and plants)
Cj0273	PWY-5994	palmitate biosynthesis I (animals and fungi)
Cj0273	PWY-6113	superpathway of mycolate biosynthesis
Cj0273	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Cj0273	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cj0273	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cj0273	PWYG-321	mycolate biosynthesis
Cj0279	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cj0279	PWY-5686	UMP biosynthesis
Cj0279	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cj0281c	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cj0281c	PWY-5723	Rubisco shunt
Cj0293	PWY-5381	pyridine nucleotide cycling (plants)
Cj0293	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Cj0293	PWY-6596	adenosine nucleotides degradation I
Cj0293	PWY-6606	guanosine nucleotides degradation II
Cj0293	PWY-6607	guanosine nucleotides degradation I
Cj0293	PWY-6608	guanosine nucleotides degradation III
Cj0293	PWY-7185	UTP and CTP dephosphorylation I
Cj0296c	PWY-5155	&beta;-alanine biosynthesis III
Cj0298c	PWY-6654	phosphopantothenate biosynthesis III
Cj0304c	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cj0308c	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Cj0314	PWY-2941	L-lysine biosynthesis II
Cj0314	PWY-2942	L-lysine biosynthesis III
Cj0314	PWY-5097	L-lysine biosynthesis VI
Cj0316	PWY-3461	L-tyrosine biosynthesis II
Cj0316	PWY-3462	L-phenylalanine biosynthesis II
Cj0316	PWY-6120	L-tyrosine biosynthesis III
Cj0316	PWY-6627	salinosporamide A biosynthesis
Cj0316	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Cj0321	PWY-6891	thiazole biosynthesis II (Bacillus)
Cj0321	PWY-6892	thiazole biosynthesis I (E. coli)
Cj0321	PWY-7560	methylerythritol phosphate pathway II
Cj0324	PWY-5839	menaquinol-7 biosynthesis
Cj0324	PWY-5844	menaquinol-9 biosynthesis
Cj0324	PWY-5849	menaquinol-6 biosynthesis
Cj0324	PWY-5890	menaquinol-10 biosynthesis
Cj0324	PWY-5891	menaquinol-11 biosynthesis
Cj0324	PWY-5892	menaquinol-12 biosynthesis
Cj0324	PWY-5895	menaquinol-13 biosynthesis
Cj0328c	PWY-4381	fatty acid biosynthesis initiation I
Cj0332c	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cj0332c	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Cj0332c	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cj0332c	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cj0332c	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Cj0332c	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cj0332c	PWY-7205	CMP phosphorylation
Cj0332c	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cj0332c	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cj0332c	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cj0332c	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cj0332c	PWY-7224	purine deoxyribonucleosides salvage
Cj0332c	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cj0332c	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Cj0345	PWY-5958	acridone alkaloid biosynthesis
Cj0345	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Cj0345	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Cj0346	PWY-5958	acridone alkaloid biosynthesis
Cj0346	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Cj0346	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Cj0356c	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cj0356c	PWY-6148	tetrahydromethanopterin biosynthesis
Cj0356c	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Cj0356c	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Cj0360	PWY-6749	CMP-legionaminate biosynthesis I
Cj0381c	PWY-5686	UMP biosynthesis
Cj0383c	PWY-6167	flavin biosynthesis II (archaea)
Cj0383c	PWY-6168	flavin biosynthesis III (fungi)
Cj0384c	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cj0384c	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cj0387	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cj0389	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Cj0392c	PWY-1042	glycolysis IV (plant cytosol)
Cj0392c	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cj0392c	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cj0392c	PWY-5723	Rubisco shunt
Cj0392c	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cj0392c	PWY-6886	1-butanol autotrophic biosynthesis
Cj0392c	PWY-6901	superpathway of glucose and xylose degradation
Cj0392c	PWY-7003	glycerol degradation to butanol
Cj0392c	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Cj0392c	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cj0393c	PWY-7254	TCA cycle VII (acetate-producers)
Cj0394c	PWY-3961	phosphopantothenate biosynthesis II
Cj0402	PWY-1622	formaldehyde assimilation I (serine pathway)
Cj0402	PWY-181	photorespiration
Cj0402	PWY-2161	folate polyglutamylation
Cj0402	PWY-2201	folate transformations I
Cj0402	PWY-3661	glycine betaine degradation I
Cj0402	PWY-3661-1	glycine betaine degradation II (mammalian)
Cj0402	PWY-3841	folate transformations II
Cj0402	PWY-5497	purine nucleobases degradation II (anaerobic)
Cj0405	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cj0409	PWY-3781	aerobic respiration I (cytochrome c)
Cj0409	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cj0409	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cj0409	PWY-5690	TCA cycle II (plants and fungi)
Cj0409	PWY-6728	methylaspartate cycle
Cj0409	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cj0409	PWY-7254	TCA cycle VII (acetate-producers)
Cj0409	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cj0410	PWY-3781	aerobic respiration I (cytochrome c)
Cj0410	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cj0410	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cj0410	PWY-5690	TCA cycle II (plants and fungi)
Cj0410	PWY-6728	methylaspartate cycle
Cj0410	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cj0410	PWY-7254	TCA cycle VII (acetate-producers)
Cj0410	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cj0414	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Cj0432c	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cj0432c	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cj0433c	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cj0433c	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cj0433c	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cj0434	PWY-1042	glycolysis IV (plant cytosol)
Cj0434	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cj0434	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cj0434	PWY-5723	Rubisco shunt
Cj0434	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cj0434	PWY-6886	1-butanol autotrophic biosynthesis
Cj0434	PWY-6901	superpathway of glucose and xylose degradation
Cj0434	PWY-7003	glycerol degradation to butanol
Cj0434	PWY-7124	ethylene biosynthesis V (engineered)
Cj0434	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Cj0435	PWY-5367	petroselinate biosynthesis
Cj0435	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Cj0435	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Cj0435	PWY-5989	stearate biosynthesis II (bacteria and plants)
Cj0435	PWY-5994	palmitate biosynthesis I (animals and fungi)
Cj0435	PWY-6113	superpathway of mycolate biosynthesis
Cj0435	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Cj0435	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cj0435	PWY-6951	Cj0435|fabG|YP_002343872.1|GeneID:904760
Cj0435	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Cj0435	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cj0435	PWYG-321	mycolate biosynthesis
Cj0436	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cj0436	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cj0437	PWY-3781	aerobic respiration I (cytochrome c)
Cj0437	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cj0437	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cj0437	PWY-5690	TCA cycle II (plants and fungi)
Cj0437	PWY-6728	methylaspartate cycle
Cj0437	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cj0437	PWY-7254	TCA cycle VII (acetate-producers)
Cj0437	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cj0438	PWY-3781	aerobic respiration I (cytochrome c)
Cj0438	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cj0438	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cj0438	PWY-5690	TCA cycle II (plants and fungi)
Cj0438	PWY-6728	methylaspartate cycle
Cj0438	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cj0438	PWY-7254	TCA cycle VII (acetate-producers)
Cj0438	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cj0440c	PWY-6899	base-degraded thiamin salvage
Cj0440c	PWY-7356	thiamin salvage IV (yeast)
Cj0443	PWY-4381	fatty acid biosynthesis initiation I
Cj0443	PWY-5743	3-hydroxypropanoate cycle
Cj0443	PWY-5744	glyoxylate assimilation
Cj0443	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cj0443	PWY-6679	jadomycin biosynthesis
Cj0443	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cj0451	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cj0451	PWY-5723	Rubisco shunt
Cj0453	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Cj0462	PWY-5198	factor 420 biosynthesis
Cj0481	PWY-2941	L-lysine biosynthesis II
Cj0481	PWY-2942	L-lysine biosynthesis III
Cj0481	PWY-5097	L-lysine biosynthesis VI
Cj0512	PWY-6123	inosine-5'-phosphate biosynthesis I
Cj0512	PWY-6124	inosine-5'-phosphate biosynthesis II
Cj0512	PWY-7234	inosine-5'-phosphate biosynthesis III
Cj0513	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cj0513	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cj0513	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cj0514	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cj0514	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cj0514	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cj0516	PWY-5667	CDP-diacylglycerol biosynthesis I
Cj0516	PWY-5981	CDP-diacylglycerol biosynthesis III
Cj0516	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
Cj0516	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Cj0531	PWY-5913	TCA cycle VI (obligate autotrophs)
Cj0531	PWY-6549	L-glutamine biosynthesis III
Cj0531	PWY-6728	methylaspartate cycle
Cj0531	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cj0531	PWY-7124	ethylene biosynthesis V (engineered)
Cj0531	PWY-7254	TCA cycle VII (acetate-producers)
Cj0531	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cj0533	PWY-5392	reductive TCA cycle II
Cj0533	PWY-5537	pyruvate fermentation to acetate V
Cj0533	PWY-5538	pyruvate fermentation to acetate VI
Cj0533	PWY-5690	TCA cycle II (plants and fungi)
Cj0533	PWY-5913	TCA cycle VI (obligate autotrophs)
Cj0533	PWY-6728	methylaspartate cycle
Cj0533	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cj0533	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cj0534	PWY-5392	reductive TCA cycle II
Cj0534	PWY-5537	pyruvate fermentation to acetate V
Cj0534	PWY-5538	pyruvate fermentation to acetate VI
Cj0534	PWY-5690	TCA cycle II (plants and fungi)
Cj0534	PWY-5913	TCA cycle VI (obligate autotrophs)
Cj0534	PWY-6728	methylaspartate cycle
Cj0534	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cj0534	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cj0542	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cj0545	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cj0545	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cj0572	PWY-6167	flavin biosynthesis II (archaea)
Cj0572	PWY-6168	flavin biosynthesis III (fungi)
Cj0572	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Cj0574	PWY-5101	L-isoleucine biosynthesis II
Cj0574	PWY-5103	L-isoleucine biosynthesis III
Cj0574	PWY-5104	L-isoleucine biosynthesis IV
Cj0574	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Cj0574	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Cj0574	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Cj0574	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cj0575	PWY-5101	L-isoleucine biosynthesis II
Cj0575	PWY-5103	L-isoleucine biosynthesis III
Cj0575	PWY-5104	L-isoleucine biosynthesis IV
Cj0575	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Cj0575	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Cj0575	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Cj0575	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cj0577c	PWY-6700	queuosine biosynthesis
Cj0582	PWY-2941	L-lysine biosynthesis II
Cj0582	PWY-2942	L-lysine biosynthesis III
Cj0582	PWY-5097	L-lysine biosynthesis VI
Cj0582	PWY-6559	spermidine biosynthesis II
Cj0582	PWY-6562	norspermidine biosynthesis
Cj0582	PWY-7153	grixazone biosynthesis
Cj0585	PWY-6614	tetrahydrofolate biosynthesis
Cj0589	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Cj0589	PWY-6167	flavin biosynthesis II (archaea)
Cj0589	PWY-6168	flavin biosynthesis III (fungi)
Cj0597	PWY-1042	glycolysis IV (plant cytosol)
Cj0597	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cj0597	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cj0597	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cj0597	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cj0632	PWY-5101	L-isoleucine biosynthesis II
Cj0632	PWY-5103	L-isoleucine biosynthesis III
Cj0632	PWY-5104	L-isoleucine biosynthesis IV
Cj0632	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cj0639c	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cj0641	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Cj0641	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cj0641	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Cj0647	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cj0647	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cj0665c	PWY-4983	L-citrulline-nitric oxide cycle
Cj0665c	PWY-4984	urea cycle
Cj0665c	PWY-5	canavanine biosynthesis
Cj0665c	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cj0665c	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cj0686	PWY-7560	methylerythritol phosphate pathway II
Cj0688	PWY-1281	sulfoacetaldehyde degradation I
Cj0688	PWY-5482	pyruvate fermentation to acetate II
Cj0688	PWY-5485	pyruvate fermentation to acetate IV
Cj0688	PWY-5497	purine nucleobases degradation II (anaerobic)
Cj0688	PWY-6637	sulfolactate degradation II
Cj0689	PWY-5482	pyruvate fermentation to acetate II
Cj0689	PWY-5485	pyruvate fermentation to acetate IV
Cj0689	PWY-5497	purine nucleobases degradation II (anaerobic)
Cj0699c	PWY-381	nitrate reduction II (assimilatory)
Cj0699c	PWY-5675	nitrate reduction V (assimilatory)
Cj0699c	PWY-6549	L-glutamine biosynthesis III
Cj0699c	PWY-6963	ammonia assimilation cycle I
Cj0699c	PWY-6964	ammonia assimilation cycle II
Cj0702	PWY-6123	inosine-5'-phosphate biosynthesis I
Cj0702	PWY-7234	inosine-5'-phosphate biosynthesis III
Cj0705	PWY-5663	tetrahydrobiopterin biosynthesis I
Cj0705	PWY-5664	tetrahydrobiopterin biosynthesis II
Cj0705	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cj0705	PWY-6703	preQ<sub>0</sub> biosynthesis
Cj0705	PWY-6983	tetrahydrobiopterin biosynthesis III
Cj0705	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Cj0713	PWY-6829	tRNA methylation (yeast)
Cj0713	PWY-7285	methylwyosine biosynthesis
Cj0713	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Cj0715	PWY-5691	urate degradation to allantoin I
Cj0715	PWY-7394	urate degradation to allantoin II
Cj0716	PWY-6164	3-dehydroquinate biosynthesis I
Cj0719c	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cj0763c	PWY-6936	seleno-amino acid biosynthesis
Cj0763c	PWY-7274	D-cycloserine biosynthesis
Cj0764c	PWY-40	putrescine biosynthesis I
Cj0764c	PWY-43	putrescine biosynthesis II
Cj0764c	PWY-6305	putrescine biosynthesis IV
Cj0764c	PWY-6834	spermidine biosynthesis III
Cj0766c	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cj0766c	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cj0766c	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cj0766c	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Cj0766c	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cj0766c	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cj0790	PWY-2201	folate transformations I
Cj0790	PWY-5497	purine nucleobases degradation II (anaerobic)
Cj0795c	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cj0795c	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cj0798c	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cj0798c	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cj0804	PWY-5686	UMP biosynthesis
Cj0806	PWY-2941	L-lysine biosynthesis II
Cj0806	PWY-2942	L-lysine biosynthesis III
Cj0806	PWY-5097	L-lysine biosynthesis VI
Cj0813	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cj0813	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cj0821	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cj0835c	PWY-5747	2-methylcitrate cycle II
Cj0840c	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cj0845c	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cj0847	PWY-5669	phosphatidylethanolamine biosynthesis I
Cj0853c	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cj0855	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Cj0855	PWY-2201	folate transformations I
Cj0855	PWY-3841	folate transformations II
Cj0855	PWY-5030	L-histidine degradation III
Cj0855	PWY-5497	purine nucleobases degradation II (anaerobic)
Cj0855	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Cj0857c	PWY-6823	molybdenum cofactor biosynthesis
Cj0858c	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cj0858c	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cj0861c	PWY-5958	acridone alkaloid biosynthesis
Cj0861c	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Cj0861c	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Cj0894c	PWY-7560	methylerythritol phosphate pathway II
Cj0895c	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cj0905c	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cj0912c	PWY-6936	seleno-amino acid biosynthesis
Cj0927	PWY-6605	adenine and adenosine salvage II
Cj0927	PWY-6610	adenine and adenosine salvage IV
Cj0929	PWY-5988	wound-induced proteolysis I
Cj0929	PWY-6018	seed germination protein turnover
Cj0931c	PWY-4983	L-citrulline-nitric oxide cycle
Cj0931c	PWY-4984	urea cycle
Cj0931c	PWY-5	canavanine biosynthesis
Cj0931c	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cj0931c	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cj0932c	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cj0932c	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Cj0949c	PWY-43	putrescine biosynthesis II
Cj0953c	PWY-6123	inosine-5'-phosphate biosynthesis I
Cj0953c	PWY-6124	inosine-5'-phosphate biosynthesis II
Cj0953c	PWY-7234	inosine-5'-phosphate biosynthesis III
Cj0955c	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cj0955c	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cj0955c	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cj0994c	PWY-4981	L-proline biosynthesis II (from arginine)
Cj0994c	PWY-4984	urea cycle
Cj0994c	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cj0995c	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cj0995c	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cj0996	PWY-6168	flavin biosynthesis III (fungi)
Cj0996	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Cj1008c	PWY-6164	3-dehydroquinate biosynthesis I
Cj1010	PWY-6700	queuosine biosynthesis
Cj1023c	PWY-2941	L-lysine biosynthesis II
Cj1023c	PWY-2942	L-lysine biosynthesis III
Cj1023c	PWY-5097	L-lysine biosynthesis VI
Cj1023c	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cj1023c	PWY-6559	spermidine biosynthesis II
Cj1023c	PWY-6562	norspermidine biosynthesis
Cj1023c	PWY-7153	grixazone biosynthesis
Cj1023c	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cj1039	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cj1039	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Cj1039	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cj1039	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cj1043c	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Cj1043c	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Cj1043c	PWY-6897	thiamin salvage II
Cj1043c	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Cj1043c	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Cj1043c	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Cj1043c	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cj1044c	PWY-6892	thiazole biosynthesis I (E. coli)
Cj1044c	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Cj1045c	PWY-6891	thiazole biosynthesis II (Bacillus)
Cj1045c	PWY-6892	thiazole biosynthesis I (E. coli)
Cj1054c	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cj1054c	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cj1058c	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Cj1058c	PWY-6596	adenosine nucleotides degradation I
Cj1058c	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cj1059c	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Cj1067	PWY-5269	cardiolipin biosynthesis II
Cj1067	PWY-5668	cardiolipin biosynthesis I
Cj1076	PWY-3341	L-proline biosynthesis III
Cj1076	PWY-4981	L-proline biosynthesis II (from arginine)
Cj1076	PWY-6344	L-ornithine degradation II (Stickland reaction)
Cj1080c	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cj1080c	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cj1081c	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Cj1081c	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Cj1081c	PWY-6897	thiamin salvage II
Cj1081c	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Cj1081c	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Cj1081c	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Cj1081c	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cj1082c	PWY-6910	hydroxymethylpyrimidine salvage
Cj1082c	PWY-7356	thiamin salvage IV (yeast)
Cj1082c	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cj1088c	PWY-2161	folate polyglutamylation
Cj1096c	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Cj1096c	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Cj1098	PWY-5686	UMP biosynthesis
Cj1104	PWY-7560	methylerythritol phosphate pathway II
Cj1114c	PWY-5669	phosphatidylethanolamine biosynthesis I
Cj1115c	PWY-5669	phosphatidylethanolamine biosynthesis I
Cj1131c	PWY-3821	galactose degradation III
Cj1131c	PWY-6317	galactose degradation I (Leloir pathway)
Cj1131c	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Cj1131c	PWY-6527	stachyose degradation
Cj1131c	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Cj1131c	PWY-7344	UDP-D-galactose biosynthesis
Cj1143	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cj1143	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cj1149c	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
Cj1156	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cj1167	PWY-5481	pyruvate fermentation to lactate
Cj1167	PWY-6901	superpathway of glucose and xylose degradation
Cj1177c	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cj1186c	PWY-3781	aerobic respiration I (cytochrome c)
Cj1186c	PWY-6692	Fe(II) oxidation
Cj1186c	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
Cj1186c	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cj1196c	PWY-5667	CDP-diacylglycerol biosynthesis I
Cj1196c	PWY-5981	CDP-diacylglycerol biosynthesis III
Cj1198	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Cj1198	PWY-6153	autoinducer AI-2 biosynthesis I
Cj1198	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
Cj1201	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Cj1201	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Cj1201	PWY-6936	seleno-amino acid biosynthesis
Cj1201	PWY-702	L-methionine biosynthesis II
Cj1202	PWY-2201	folate transformations I
Cj1202	PWY-3841	folate transformations II
Cj1213c	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cj1213c	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cj1218c	PWY-6167	flavin biosynthesis II (archaea)
Cj1218c	PWY-6168	flavin biosynthesis III (fungi)
Cj1218c	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cj1243	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cj1243	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cj1248	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cj1250	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cj1250	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cj1250	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cj1270c	PWY-723	alkylnitronates degradation
Cj1286c	PWY-7183	pyrimidine nucleobases salvage I
Cj1288c	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cj1292	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cj1293	PWY-6143	CMP-pseudaminate biosynthesis
Cj1293	PWY-7330	UDP-<i>N</i>-acetyl-&beta;-L-fucosamine biosynthesis
Cj1293	PWY-7331	UDP-<i>N</i>-acetyl-&beta;-L-quinovosamine biosynthesis
Cj1293	PWY-7332	superpathway of UDP-<I>N</i>-acetylglucosamine-derived O-antigen building blocks biosynthesis
Cj1303	PWY-4381	fatty acid biosynthesis initiation I
Cj1311	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cj1311	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cj1311	PWY-6143	CMP-pseudaminate biosynthesis
Cj1317	PWY-6143	CMP-pseudaminate biosynthesis
Cj1327	PWY-6749	CMP-legionaminate biosynthesis I
Cj1327	PWY-7131	CMP-legionaminate biosynthesis II
Cj1331	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cj1331	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cj1346c	PWY-7560	methylerythritol phosphate pathway II
Cj1350	PWY-5964	guanylyl molybdenum cofactor biosynthesis
Cj1351	PWY-6803	phosphatidylcholine acyl editing
Cj1351	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
Cj1351	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
Cj1351	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Cj1357c	PWY-5674	nitrate reduction IV (dissimilatory)
Cj1364c	PWY-5392	reductive TCA cycle II
Cj1364c	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cj1364c	PWY-5690	TCA cycle II (plants and fungi)
Cj1364c	PWY-5913	TCA cycle VI (obligate autotrophs)
Cj1364c	PWY-6728	methylaspartate cycle
Cj1364c	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cj1364c	PWY-7254	TCA cycle VII (acetate-producers)
Cj1364c	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cj1366c	PWY-6749	CMP-legionaminate biosynthesis I
Cj1368	PWY-5198	factor 420 biosynthesis
Cj1368	PWY-7371	1,4-dihydroxy-6-naphthoate biosynthesis II
Cj1368	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
Cj1374c	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Cj1385	PWY-5506	methanol oxidation to formaldehyde IV
Cj1394	PWY-6123	inosine-5'-phosphate biosynthesis I
Cj1394	PWY-6124	inosine-5'-phosphate biosynthesis II
Cj1394	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cj1394	PWY-7234	inosine-5'-phosphate biosynthesis III
Cj1400c	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Cj1400c	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Cj1400c	PWY-5989	stearate biosynthesis II (bacteria and plants)
Cj1400c	PWY-6113	superpathway of mycolate biosynthesis
Cj1400c	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Cj1400c	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cj1400c	PWY-7096	triclosan resistance
Cj1400c	PWYG-321	mycolate biosynthesis
Cj1401c	PWY-1042	glycolysis IV (plant cytosol)
Cj1401c	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cj1401c	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cj1401c	PWY-7003	glycerol degradation to butanol
Cj1402c	PWY-1042	glycolysis IV (plant cytosol)
Cj1402c	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cj1402c	PWY-6886	1-butanol autotrophic biosynthesis
Cj1402c	PWY-6901	superpathway of glucose and xylose degradation
Cj1402c	PWY-7003	glycerol degradation to butanol
Cj1403c	PWY-1042	glycolysis IV (plant cytosol)
Cj1403c	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cj1403c	PWY-6901	superpathway of glucose and xylose degradation
Cj1403c	PWY-7003	glycerol degradation to butanol
Cj1404	PWY-5381	pyridine nucleotide cycling (plants)
Cj1404	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Cj1407c	PWY-6749	CMP-legionaminate biosynthesis I
Cj1409	PWY-6012	acyl carrier protein metabolism I
Cj1409	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Cj1415c	PWY-5340	sulfate activation for sulfonation
Cj1415c	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cj1424c	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
Cj1425c	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
Cj1428c	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Cj1439c	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Cj1439c	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Cj1441c	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Cj1458c	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Cj1458c	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Cj1458c	PWY-6896	thiamin salvage I
Cj1458c	PWY-6897	thiamin salvage II
Cj1489c	PWY-3781	aerobic respiration I (cytochrome c)
Cj1489c	PWY-4521	arsenite oxidation I (respiratory)
Cj1489c	PWY-6692	Fe(II) oxidation
Cj1489c	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cj1490c	PWY-3781	aerobic respiration I (cytochrome c)
Cj1490c	PWY-4521	arsenite oxidation I (respiratory)
Cj1490c	PWY-6692	Fe(II) oxidation
Cj1490c	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cj1494c	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cj1494c	PWY-5686	UMP biosynthesis
Cj1494c	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cj1498c	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cj1503c	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
Cj1503c	PWY-6853	ethylene biosynthesis II (microbes)
Cj1503c	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Cj1504c	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Cj1515c	PWY-6562	norspermidine biosynthesis
Cj1518	PWY-6823	molybdenum cofactor biosynthesis
Cj1519	PWY-6823	molybdenum cofactor biosynthesis
Cj1529c	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cj1529c	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cj1529c	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cj1531	PWY-2941	L-lysine biosynthesis II
Cj1531	PWY-5097	L-lysine biosynthesis VI
Cj1535c	PWY-3801	sucrose degradation II (sucrose synthase)
Cj1535c	PWY-5054	sorbitol biosynthesis I
Cj1535c	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Cj1535c	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cj1535c	PWY-5659	GDP-mannose biosynthesis
Cj1535c	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cj1535c	PWY-621	sucrose degradation III (sucrose invertase)
Cj1535c	PWY-622	starch biosynthesis
Cj1535c	PWY-6531	mannitol cycle
Cj1535c	PWY-6981	chitin biosynthesis
Cj1535c	PWY-7238	sucrose biosynthesis II
Cj1535c	PWY-7347	sucrose biosynthesis III
Cj1535c	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cj1536c	PWY-3801	sucrose degradation II (sucrose synthase)
Cj1536c	PWY-6527	stachyose degradation
Cj1536c	PWY-6981	chitin biosynthesis
Cj1536c	PWY-7238	sucrose biosynthesis II
Cj1536c	PWY-7343	UDP-glucose biosynthesis
Cj1537c	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Cj1537c	PWY-7118	chitin degradation to ethanol
Cj1585c	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cj1585c	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cj1607	PWY-7560	methylerythritol phosphate pathway II
Cj1609	PWY-5278	sulfite oxidation III
Cj1609	PWY-5340	sulfate activation for sulfonation
Cj1609	PWY-6683	sulfate reduction III (assimilatory)
Cj1609	PWY-6932	selenate reduction
Cj1610	PWY-5269	cardiolipin biosynthesis II
Cj1610	PWY-5668	cardiolipin biosynthesis I
Cj1613c	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cj1613c	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cj1634c	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cj1645	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cj1645	PWY-5723	Rubisco shunt
Cj1645	PWY-6891	thiazole biosynthesis II (Bacillus)
Cj1645	PWY-6892	thiazole biosynthesis I (E. coli)
Cj1645	PWY-6901	superpathway of glucose and xylose degradation
Cj1645	PWY-7560	methylerythritol phosphate pathway II
Cj1652c	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cj1652c	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cj1672c	PWY-1042	glycolysis IV (plant cytosol)
Cj1672c	PWY-1622	formaldehyde assimilation I (serine pathway)
Cj1672c	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cj1672c	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cj1672c	PWY-5723	Rubisco shunt
Cj1672c	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cj1672c	PWY-6886	1-butanol autotrophic biosynthesis
Cj1672c	PWY-6901	superpathway of glucose and xylose degradation
Cj1672c	PWY-7003	glycerol degradation to butanol
Cj1672c	PWY-7124	ethylene biosynthesis V (engineered)
Cj1672c	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Cj1676	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cj1676	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cj1685c	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Cj1718c	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Cj1719c	PWY-6871	3-methylbutanol biosynthesis
Cj1724c	PWY-6700	queuosine biosynthesis
Cj1727c	PWY-5344	L-homocysteine biosynthesis
Cj1727c	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
