Cla_0004	PWY-6610	adenine and adenosine salvage IV
Cla_0006	PWY-6700	queuosine biosynthesis
Cla_0011	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cla_0012	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Cla_0012	PWY-7177	UTP and CTP dephosphorylation II
Cla_0012	PWY-7185	UTP and CTP dephosphorylation I
Cla_0024	PWY-6123	inosine-5'-phosphate biosynthesis I
Cla_0024	PWY-6124	inosine-5'-phosphate biosynthesis II
Cla_0024	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cla_0024	PWY-7234	inosine-5'-phosphate biosynthesis III
Cla_0025	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cla_0025	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cla_0025	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cla_0025	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cla_0025	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cla_0025	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cla_0025	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cla_0025	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Cla_0041	PWY-5686	UMP biosynthesis
Cla_0043	PWY-7039	phosphatidate metabolism, as a signaling molecule
Cla_0048	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cla_0048	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cla_0048	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cla_0050	PWY-6854	ethylene biosynthesis III (microbes)
Cla_0052	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cla_0052	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cla_0052	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cla_0054	PWY-2941	L-lysine biosynthesis II
Cla_0054	PWY-5097	L-lysine biosynthesis VI
Cla_0079	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cla_0079	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cla_0116	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cla_0116	PWY-5723	Rubisco shunt
Cla_0116	PWY-6891	thiazole biosynthesis II (Bacillus)
Cla_0116	PWY-6892	thiazole biosynthesis I (E. coli)
Cla_0116	PWY-6901	superpathway of glucose and xylose degradation
Cla_0116	PWY-7560	methylerythritol phosphate pathway II
Cla_0122	PWY-6854	ethylene biosynthesis III (microbes)
Cla_0140	PWY-5392	reductive TCA cycle II
Cla_0140	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cla_0140	PWY-5690	TCA cycle II (plants and fungi)
Cla_0140	PWY-5913	TCA cycle VI (obligate autotrophs)
Cla_0140	PWY-6728	methylaspartate cycle
Cla_0140	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cla_0140	PWY-7254	TCA cycle VII (acetate-producers)
Cla_0140	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cla_0152	PWY-1042	glycolysis IV (plant cytosol)
Cla_0152	PWY-1622	formaldehyde assimilation I (serine pathway)
Cla_0152	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cla_0152	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cla_0152	PWY-5723	Rubisco shunt
Cla_0152	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cla_0152	PWY-6886	1-butanol autotrophic biosynthesis
Cla_0152	PWY-6901	superpathway of glucose and xylose degradation
Cla_0152	PWY-7003	glycerol degradation to butanol
Cla_0152	PWY-7124	ethylene biosynthesis V (engineered)
Cla_0152	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Cla_0156	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cla_0156	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cla_0160	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Cla_0169	PWY-6143	CMP-pseudaminate biosynthesis
Cla_0176	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cla_0176	PWY-6148	tetrahydromethanopterin biosynthesis
Cla_0176	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Cla_0176	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Cla_0187	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Cla_0187	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Cla_0193	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cla_0195	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cla_0204	PWY-4381	fatty acid biosynthesis initiation I
Cla_0204	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Cla_0204	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cla_0205	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Cla_0205	PWY-6153	autoinducer AI-2 biosynthesis I
Cla_0205	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
Cla_0214	PWY-4381	fatty acid biosynthesis initiation I
Cla_0214	PWY-5743	3-hydroxypropanoate cycle
Cla_0214	PWY-5744	glyoxylate assimilation
Cla_0214	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cla_0214	PWY-6679	jadomycin biosynthesis
Cla_0214	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cla_0216	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
Cla_0220	PWY-702	L-methionine biosynthesis II
Cla_0230	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cla_0230	PWY-6416	quinate degradation II
Cla_0230	PWY-6707	gallate biosynthesis
Cla_0232	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cla_0232	PWY-6148	tetrahydromethanopterin biosynthesis
Cla_0232	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Cla_0232	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Cla_0242	PWY-5269	cardiolipin biosynthesis II
Cla_0242	PWY-5668	cardiolipin biosynthesis I
Cla_0243	PWY-5278	sulfite oxidation III
Cla_0243	PWY-5340	sulfate activation for sulfonation
Cla_0243	PWY-6683	sulfate reduction III (assimilatory)
Cla_0243	PWY-6932	selenate reduction
Cla_0245	PWY-7560	methylerythritol phosphate pathway II
Cla_0249	PWY-3801	sucrose degradation II (sucrose synthase)
Cla_0249	PWY-5054	sorbitol biosynthesis I
Cla_0249	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Cla_0249	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cla_0249	PWY-5659	GDP-mannose biosynthesis
Cla_0249	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cla_0249	PWY-621	sucrose degradation III (sucrose invertase)
Cla_0249	PWY-622	starch biosynthesis
Cla_0249	PWY-6531	mannitol cycle
Cla_0249	PWY-6981	chitin biosynthesis
Cla_0249	PWY-7238	sucrose biosynthesis II
Cla_0249	PWY-7347	sucrose biosynthesis III
Cla_0249	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cla_0250	PWY-3801	sucrose degradation II (sucrose synthase)
Cla_0250	PWY-6527	stachyose degradation
Cla_0250	PWY-6981	chitin biosynthesis
Cla_0250	PWY-7238	sucrose biosynthesis II
Cla_0250	PWY-7343	UDP-glucose biosynthesis
Cla_0256	PWY-6749	CMP-legionaminate biosynthesis I
Cla_0266	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cla_0266	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cla_0267	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cla_0267	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cla_0267	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cla_0268	PWY-1042	glycolysis IV (plant cytosol)
Cla_0268	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cla_0268	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cla_0268	PWY-5723	Rubisco shunt
Cla_0268	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cla_0268	PWY-6886	1-butanol autotrophic biosynthesis
Cla_0268	PWY-6901	superpathway of glucose and xylose degradation
Cla_0268	PWY-7003	glycerol degradation to butanol
Cla_0268	PWY-7124	ethylene biosynthesis V (engineered)
Cla_0268	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Cla_0269	PWY-5367	petroselinate biosynthesis
Cla_0269	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Cla_0269	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Cla_0269	PWY-5989	stearate biosynthesis II (bacteria and plants)
Cla_0269	PWY-5994	palmitate biosynthesis I (animals and fungi)
Cla_0269	PWY-6113	superpathway of mycolate biosynthesis
Cla_0269	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Cla_0269	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cla_0269	PWY-6951	Cla_0269|fabG|REF_USDA:Cla_0269|GeneID:7410178
Cla_0269	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Cla_0269	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cla_0269	PWYG-321	mycolate biosynthesis
Cla_0270	PWY-6012	acyl carrier protein metabolism I
Cla_0270	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Cla_0273	PWY-5506	methanol oxidation to formaldehyde IV
Cla_0275	PWY-4983	L-citrulline-nitric oxide cycle
Cla_0275	PWY-4984	urea cycle
Cla_0275	PWY-5	canavanine biosynthesis
Cla_0275	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cla_0275	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cla_0279	PWY-6936	seleno-amino acid biosynthesis
Cla_0280	PWY-6123	inosine-5'-phosphate biosynthesis I
Cla_0280	PWY-6124	inosine-5'-phosphate biosynthesis II
Cla_0280	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cla_0280	PWY-7234	inosine-5'-phosphate biosynthesis III
Cla_0284	PWY-6899	base-degraded thiamin salvage
Cla_0284	PWY-7356	thiamin salvage IV (yeast)
Cla_0287	PWY-4381	fatty acid biosynthesis initiation I
Cla_0287	PWY-5743	3-hydroxypropanoate cycle
Cla_0287	PWY-5744	glyoxylate assimilation
Cla_0287	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cla_0287	PWY-6679	jadomycin biosynthesis
Cla_0287	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cla_0317	PWY-5340	sulfate activation for sulfonation
Cla_0317	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cla_0334	PWY-3781	aerobic respiration I (cytochrome c)
Cla_0334	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cla_0334	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cla_0334	PWY-5690	TCA cycle II (plants and fungi)
Cla_0334	PWY-6728	methylaspartate cycle
Cla_0334	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cla_0334	PWY-7254	TCA cycle VII (acetate-producers)
Cla_0334	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cla_0335	PWY-3781	aerobic respiration I (cytochrome c)
Cla_0335	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cla_0335	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cla_0335	PWY-5690	TCA cycle II (plants and fungi)
Cla_0335	PWY-6728	methylaspartate cycle
Cla_0335	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cla_0335	PWY-7254	TCA cycle VII (acetate-producers)
Cla_0335	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cla_0339	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cla_0339	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cla_0350	PWY-6823	molybdenum cofactor biosynthesis
Cla_0351	PWY-6823	molybdenum cofactor biosynthesis
Cla_0354	PWY-6562	norspermidine biosynthesis
Cla_0362	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Cla_0363	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
Cla_0363	PWY-6853	ethylene biosynthesis II (microbes)
Cla_0363	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Cla_0368	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cla_0372	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cla_0372	PWY-5686	UMP biosynthesis
Cla_0372	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cla_0374	PWY-3781	aerobic respiration I (cytochrome c)
Cla_0374	PWY-4521	arsenite oxidation I (respiratory)
Cla_0374	PWY-6692	Fe(II) oxidation
Cla_0374	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cla_0375	PWY-3781	aerobic respiration I (cytochrome c)
Cla_0375	PWY-4521	arsenite oxidation I (respiratory)
Cla_0375	PWY-6692	Fe(II) oxidation
Cla_0375	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cla_0405	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Cla_0405	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Cla_0405	PWY-6896	thiamin salvage I
Cla_0405	PWY-6897	thiamin salvage II
Cla_0415	PWY-1042	glycolysis IV (plant cytosol)
Cla_0415	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cla_0415	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cla_0415	PWY-7003	glycerol degradation to butanol
Cla_0416	PWY-1042	glycolysis IV (plant cytosol)
Cla_0416	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cla_0416	PWY-6886	1-butanol autotrophic biosynthesis
Cla_0416	PWY-6901	superpathway of glucose and xylose degradation
Cla_0416	PWY-7003	glycerol degradation to butanol
Cla_0417	PWY-1042	glycolysis IV (plant cytosol)
Cla_0417	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cla_0417	PWY-6901	superpathway of glucose and xylose degradation
Cla_0417	PWY-7003	glycerol degradation to butanol
Cla_0418	PWY-5381	pyridine nucleotide cycling (plants)
Cla_0418	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Cla_0424	PWY-5392	reductive TCA cycle II
Cla_0424	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cla_0424	PWY-5690	TCA cycle II (plants and fungi)
Cla_0424	PWY-5913	TCA cycle VI (obligate autotrophs)
Cla_0424	PWY-6728	methylaspartate cycle
Cla_0424	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cla_0424	PWY-7254	TCA cycle VII (acetate-producers)
Cla_0424	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cla_0425	PWY-6749	CMP-legionaminate biosynthesis I
Cla_0427	PWY-5198	factor 420 biosynthesis
Cla_0427	PWY-7371	1,4-dihydroxy-6-naphthoate biosynthesis II
Cla_0427	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
Cla_0471	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cla_0478	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
Cla_0479	PWY-1042	glycolysis IV (plant cytosol)
Cla_0479	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cla_0479	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cla_0479	PWY-5723	Rubisco shunt
Cla_0479	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cla_0479	PWY-6886	1-butanol autotrophic biosynthesis
Cla_0479	PWY-6901	superpathway of glucose and xylose degradation
Cla_0479	PWY-7003	glycerol degradation to butanol
Cla_0479	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Cla_0479	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cla_0480	PWY-7254	TCA cycle VII (acetate-producers)
Cla_0481	PWY-3961	phosphopantothenate biosynthesis II
Cla_0489	PWY-1622	formaldehyde assimilation I (serine pathway)
Cla_0489	PWY-181	photorespiration
Cla_0489	PWY-2161	folate polyglutamylation
Cla_0489	PWY-2201	folate transformations I
Cla_0489	PWY-3661	glycine betaine degradation I
Cla_0489	PWY-3661-1	glycine betaine degradation II (mammalian)
Cla_0489	PWY-3841	folate transformations II
Cla_0489	PWY-5497	purine nucleobases degradation II (anaerobic)
Cla_0492	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cla_0501	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cla_0504	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cla_0504	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cla_0504	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cla_0527	PWY-2941	L-lysine biosynthesis II
Cla_0527	PWY-2942	L-lysine biosynthesis III
Cla_0527	PWY-5097	L-lysine biosynthesis VI
Cla_0527	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cla_0527	PWY-6559	spermidine biosynthesis II
Cla_0527	PWY-6562	norspermidine biosynthesis
Cla_0527	PWY-7153	grixazone biosynthesis
Cla_0527	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cla_0529	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cla_0529	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cla_0533	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Cla_0535	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cla_0539	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cla_0539	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cla_0540	PWY-6167	flavin biosynthesis II (archaea)
Cla_0540	PWY-6168	flavin biosynthesis III (fungi)
Cla_0542	PWY-5686	UMP biosynthesis
Cla_0545	PWY-6123	inosine-5'-phosphate biosynthesis I
Cla_0545	PWY-6124	inosine-5'-phosphate biosynthesis II
Cla_0545	PWY-7234	inosine-5'-phosphate biosynthesis III
Cla_0547	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cla_0547	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cla_0547	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cla_0573	PWY-5669	phosphatidylethanolamine biosynthesis I
Cla_0579	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cla_0581	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Cla_0581	PWY-2201	folate transformations I
Cla_0581	PWY-3841	folate transformations II
Cla_0581	PWY-5030	L-histidine degradation III
Cla_0581	PWY-5497	purine nucleobases degradation II (anaerobic)
Cla_0581	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Cla_0584	PWY-6700	queuosine biosynthesis
Cla_0604	PWY-6167	flavin biosynthesis II (archaea)
Cla_0604	PWY-6168	flavin biosynthesis III (fungi)
Cla_0604	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Cla_0619	PWY-723	alkylnitronates degradation
Cla_0624	PWY-5269	cardiolipin biosynthesis II
Cla_0624	PWY-5668	cardiolipin biosynthesis I
Cla_0626	PWY-2941	L-lysine biosynthesis II
Cla_0626	PWY-2942	L-lysine biosynthesis III
Cla_0626	PWY-5097	L-lysine biosynthesis VI
Cla_0628	PWY-5686	UMP biosynthesis
Cla_0634	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cla_0634	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cla_0639	PWY-1281	sulfoacetaldehyde degradation I
Cla_0639	PWY-5482	pyruvate fermentation to acetate II
Cla_0639	PWY-5485	pyruvate fermentation to acetate IV
Cla_0639	PWY-5497	purine nucleobases degradation II (anaerobic)
Cla_0639	PWY-6637	sulfolactate degradation II
Cla_0640	PWY-5482	pyruvate fermentation to acetate II
Cla_0640	PWY-5485	pyruvate fermentation to acetate IV
Cla_0640	PWY-5497	purine nucleobases degradation II (anaerobic)
Cla_0648	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cla_0650	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Cla_0650	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cla_0650	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Cla_0656	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cla_0656	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cla_0662	PWY-6700	queuosine biosynthesis
Cla_0669	PWY-2941	L-lysine biosynthesis II
Cla_0669	PWY-2942	L-lysine biosynthesis III
Cla_0669	PWY-5097	L-lysine biosynthesis VI
Cla_0669	PWY-6559	spermidine biosynthesis II
Cla_0669	PWY-6562	norspermidine biosynthesis
Cla_0669	PWY-7153	grixazone biosynthesis
Cla_0672	PWY-6614	tetrahydrofolate biosynthesis
Cla_0675	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Cla_0675	PWY-6167	flavin biosynthesis II (archaea)
Cla_0675	PWY-6168	flavin biosynthesis III (fungi)
Cla_0678	PWY-5988	wound-induced proteolysis I
Cla_0678	PWY-6018	seed germination protein turnover
Cla_0680	PWY-6605	adenine and adenosine salvage II
Cla_0680	PWY-6610	adenine and adenosine salvage IV
Cla_0686	PWY-5198	factor 420 biosynthesis
Cla_0696	PWY-6164	3-dehydroquinate biosynthesis I
Cla_0705	PWY-5667	CDP-diacylglycerol biosynthesis I
Cla_0705	PWY-5981	CDP-diacylglycerol biosynthesis III
Cla_0705	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
Cla_0705	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Cla_0707	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cla_0707	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cla_0707	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cla_0708	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cla_0708	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cla_0708	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cla_0709	PWY-6123	inosine-5'-phosphate biosynthesis I
Cla_0709	PWY-6124	inosine-5'-phosphate biosynthesis II
Cla_0709	PWY-7234	inosine-5'-phosphate biosynthesis III
Cla_0717	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cla_0722	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cla_0728	PWY-6703	preQ<sub>0</sub> biosynthesis
Cla_0734	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cla_0734	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cla_0736	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cla_0736	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cla_0737	PWY-6823	molybdenum cofactor biosynthesis
Cla_0744	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cla_0744	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cla_0744	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cla_0744	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Cla_0744	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cla_0744	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cla_0746	PWY-40	putrescine biosynthesis I
Cla_0746	PWY-43	putrescine biosynthesis II
Cla_0746	PWY-6305	putrescine biosynthesis IV
Cla_0746	PWY-6834	spermidine biosynthesis III
Cla_0747	PWY-6936	seleno-amino acid biosynthesis
Cla_0747	PWY-7274	D-cycloserine biosynthesis
Cla_0748	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cla_0748	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Cla_0748	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cla_0748	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cla_0749	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cla_0754	PWY-4983	L-citrulline-nitric oxide cycle
Cla_0754	PWY-4984	urea cycle
Cla_0754	PWY-5	canavanine biosynthesis
Cla_0754	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cla_0754	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cla_0767	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cla_0767	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cla_0770	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cla_0806	PWY-5674	nitrate reduction IV (dissimilatory)
Cla_0812	PWY-5101	L-isoleucine biosynthesis II
Cla_0812	PWY-5103	L-isoleucine biosynthesis III
Cla_0812	PWY-5104	L-isoleucine biosynthesis IV
Cla_0812	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Cla_0812	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Cla_0812	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Cla_0812	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cla_0813	PWY-5101	L-isoleucine biosynthesis II
Cla_0813	PWY-5103	L-isoleucine biosynthesis III
Cla_0813	PWY-5104	L-isoleucine biosynthesis IV
Cla_0813	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Cla_0813	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Cla_0813	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Cla_0813	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cla_0875	PWY-43	putrescine biosynthesis II
Cla_0897	PWY-43	putrescine biosynthesis II
Cla_0903	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cla_0903	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cla_0913	PWY-1042	glycolysis IV (plant cytosol)
Cla_0913	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cla_0913	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cla_0913	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cla_0913	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cla_0948	PWY-5101	L-isoleucine biosynthesis II
Cla_0948	PWY-5103	L-isoleucine biosynthesis III
Cla_0948	PWY-5104	L-isoleucine biosynthesis IV
Cla_0948	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cla_0958	PWY-3341	L-proline biosynthesis III
Cla_0958	PWY-4981	L-proline biosynthesis II (from arginine)
Cla_0958	PWY-6344	L-ornithine degradation II (Stickland reaction)
Cla_0981	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cla_0984	PWY-5958	acridone alkaloid biosynthesis
Cla_0984	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Cla_0984	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Cla_0985	PWY-5958	acridone alkaloid biosynthesis
Cla_0985	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Cla_0985	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Cla_0990	PWY-6164	3-dehydroquinate biosynthesis I
Cla_0993	PWY-6829	tRNA methylation (yeast)
Cla_0993	PWY-7285	methylwyosine biosynthesis
Cla_0993	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Cla_1001	PWY-5663	tetrahydrobiopterin biosynthesis I
Cla_1001	PWY-5664	tetrahydrobiopterin biosynthesis II
Cla_1001	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cla_1001	PWY-6703	preQ<sub>0</sub> biosynthesis
Cla_1001	PWY-6983	tetrahydrobiopterin biosynthesis III
Cla_1001	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Cla_1004	PWY-6123	inosine-5'-phosphate biosynthesis I
Cla_1004	PWY-7234	inosine-5'-phosphate biosynthesis III
Cla_1007	PWY-381	nitrate reduction II (assimilatory)
Cla_1007	PWY-5675	nitrate reduction V (assimilatory)
Cla_1007	PWY-6549	L-glutamine biosynthesis III
Cla_1007	PWY-6963	ammonia assimilation cycle I
Cla_1007	PWY-6964	ammonia assimilation cycle II
Cla_1008	PWY-2201	folate transformations I
Cla_1008	PWY-5497	purine nucleobases degradation II (anaerobic)
Cla_1024	PWY-5674	nitrate reduction IV (dissimilatory)
Cla_1025	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Cla_1028	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cla_1028	PWY-5723	Rubisco shunt
Cla_1042	PWY-2161	folate polyglutamylation
Cla_1051	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Cla_1051	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Cla_1053	PWY-5686	UMP biosynthesis
Cla_1059	PWY-7560	methylerythritol phosphate pathway II
Cla_1089	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cla_1099	PWY-6167	flavin biosynthesis II (archaea)
Cla_1099	PWY-6168	flavin biosynthesis III (fungi)
Cla_1099	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cla_1121	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cla_1121	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cla_1122	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Cla_1122	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Cla_1122	PWY-6897	thiamin salvage II
Cla_1122	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Cla_1122	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Cla_1122	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Cla_1122	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cla_1123	PWY-6897	thiamin salvage II
Cla_1123	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Cla_1123	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cla_1124	PWY-6910	hydroxymethylpyrimidine salvage
Cla_1124	PWY-7356	thiamin salvage IV (yeast)
Cla_1124	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cla_1128	PWY-6168	flavin biosynthesis III (fungi)
Cla_1128	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Cla_1129	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cla_1129	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cla_1134	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cla_1146	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Cla_1146	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Cla_1146	PWY-6897	thiamin salvage II
Cla_1146	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Cla_1146	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Cla_1146	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Cla_1146	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cla_1147	PWY-6892	thiazole biosynthesis I (E. coli)
Cla_1147	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Cla_1148	PWY-6891	thiazole biosynthesis II (Bacillus)
Cla_1148	PWY-6892	thiazole biosynthesis I (E. coli)
Cla_1157	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cla_1157	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cla_1159	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Cla_1159	PWY-6596	adenosine nucleotides degradation I
Cla_1159	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cla_1160	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Cla_1180	PWY-5381	pyridine nucleotide cycling (plants)
Cla_1181	PWY-7560	methylerythritol phosphate pathway II
Cla_1191	PWY-7560	methylerythritol phosphate pathway II
Cla_1192	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cla_1196	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cla_1196	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Cla_1206	PWY-5667	CDP-diacylglycerol biosynthesis I
Cla_1206	PWY-5981	CDP-diacylglycerol biosynthesis III
Cla_1218	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cla_1218	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cla_1224	PWY-6936	seleno-amino acid biosynthesis
Cla_1229	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cla_1229	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cla_1235	PWY-6749	CMP-legionaminate biosynthesis I
Cla_1235	PWY-7131	CMP-legionaminate biosynthesis II
Cla_1249	PWY-3821	galactose degradation III
Cla_1249	PWY-6317	galactose degradation I (Leloir pathway)
Cla_1249	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Cla_1249	PWY-6527	stachyose degradation
Cla_1249	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Cla_1249	PWY-7344	UDP-D-galactose biosynthesis
Cla_1262	PWY-5669	phosphatidylethanolamine biosynthesis I
Cla_1263	PWY-5669	phosphatidylethanolamine biosynthesis I
Cla_1278	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Cla_1293	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cla_1297	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cla_1298	PWY-6143	CMP-pseudaminate biosynthesis
Cla_1298	PWY-7330	UDP-<i>N</i>-acetyl-&beta;-L-fucosamine biosynthesis
Cla_1298	PWY-7331	UDP-<i>N</i>-acetyl-&beta;-L-quinovosamine biosynthesis
Cla_1298	PWY-7332	superpathway of UDP-<I>N</i>-acetylglucosamine-derived O-antigen building blocks biosynthesis
Cla_1305	PWY-4381	fatty acid biosynthesis initiation I
Cla_1314	PWY-4381	fatty acid biosynthesis initiation I
Cla_1320	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cla_1320	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cla_1320	PWY-6143	CMP-pseudaminate biosynthesis
Cla_1334	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cla_1334	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Cla_1334	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cla_1334	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cla_1334	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Cla_1334	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cla_1334	PWY-7205	CMP phosphorylation
Cla_1334	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cla_1334	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cla_1334	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cla_1334	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cla_1334	PWY-7224	purine deoxyribonucleosides salvage
Cla_1334	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cla_1334	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Cla_1338	PWY-4381	fatty acid biosynthesis initiation I
Cla_1352	PWY-5839	menaquinol-7 biosynthesis
Cla_1352	PWY-5844	menaquinol-9 biosynthesis
Cla_1352	PWY-5849	menaquinol-6 biosynthesis
Cla_1352	PWY-5890	menaquinol-10 biosynthesis
Cla_1352	PWY-5891	menaquinol-11 biosynthesis
Cla_1352	PWY-5892	menaquinol-12 biosynthesis
Cla_1352	PWY-5895	menaquinol-13 biosynthesis
Cla_1355	PWY-6891	thiazole biosynthesis II (Bacillus)
Cla_1355	PWY-6892	thiazole biosynthesis I (E. coli)
Cla_1355	PWY-7560	methylerythritol phosphate pathway II
Cla_1360	PWY-3461	L-tyrosine biosynthesis II
Cla_1360	PWY-3462	L-phenylalanine biosynthesis II
Cla_1360	PWY-6120	L-tyrosine biosynthesis III
Cla_1360	PWY-6627	salinosporamide A biosynthesis
Cla_1360	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Cla_1362	PWY-2941	L-lysine biosynthesis II
Cla_1362	PWY-2942	L-lysine biosynthesis III
Cla_1362	PWY-5097	L-lysine biosynthesis VI
Cla_1366	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cla_1366	PWY-5723	Rubisco shunt
Cla_1381	PWY-5381	pyridine nucleotide cycling (plants)
Cla_1381	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Cla_1381	PWY-6596	adenosine nucleotides degradation I
Cla_1381	PWY-6606	guanosine nucleotides degradation II
Cla_1381	PWY-6607	guanosine nucleotides degradation I
Cla_1381	PWY-6608	guanosine nucleotides degradation III
Cla_1381	PWY-7185	UTP and CTP dephosphorylation I
Cla_1390	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Cla_1395	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cla_1395	PWY-5686	UMP biosynthesis
Cla_1395	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cla_1400	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Cla_1400	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Cla_1400	PWY-5989	stearate biosynthesis II (bacteria and plants)
Cla_1400	PWY-5994	palmitate biosynthesis I (animals and fungi)
Cla_1400	PWY-6113	superpathway of mycolate biosynthesis
Cla_1400	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Cla_1400	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cla_1400	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cla_1400	PWYG-321	mycolate biosynthesis
Cla_1404	PWY-5057	L-valine degradation II
Cla_1404	PWY-5076	L-leucine degradation III
Cla_1404	PWY-5078	L-isoleucine degradation II
Cla_1404	PWY-5101	L-isoleucine biosynthesis II
Cla_1404	PWY-5103	L-isoleucine biosynthesis III
Cla_1404	PWY-5104	L-isoleucine biosynthesis IV
Cla_1404	PWY-5108	L-isoleucine biosynthesis V
Cla_1408	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cla_1408	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cla_1408	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cla_1408	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cla_1409	PWY-2941	L-lysine biosynthesis II
Cla_1409	PWY-2942	L-lysine biosynthesis III
Cla_1409	PWY-5097	L-lysine biosynthesis VI
Cla_1425	PWY-6703	preQ<sub>0</sub> biosynthesis
Cla_1426	PWY-6823	molybdenum cofactor biosynthesis
Cla_1430	PWY-2781	<i>cis</i>-zeatin biosynthesis
Cla_1472	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cla_1472	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Cla_1473	PWY-6938	NADH repair
Cla_1481	PWY-5663	tetrahydrobiopterin biosynthesis I
Cla_1481	PWY-5664	tetrahydrobiopterin biosynthesis II
Cla_1481	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cla_1481	PWY-6703	preQ<sub>0</sub> biosynthesis
Cla_1481	PWY-6983	tetrahydrobiopterin biosynthesis III
Cla_1481	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Cla_1482	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cla_1486	PWY-6823	molybdenum cofactor biosynthesis
Cla_1486	PWY-6891	thiazole biosynthesis II (Bacillus)
Cla_1486	PWY-6892	thiazole biosynthesis I (E. coli)
Cla_1486	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Cla_1493	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cla_1505	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Cla_1505	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cla_1505	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cla_1505	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Cla_1509	PWY-5686	UMP biosynthesis
Cla_1511	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cla_1511	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cla_1511	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cla_1511	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cla_1511	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cla_1511	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cla_1511	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cla_1511	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Cla_1535	PWY-7560	methylerythritol phosphate pathway II
Cla_1539	PWY-5964	guanylyl molybdenum cofactor biosynthesis
Cla_1541	PWY-5101	L-isoleucine biosynthesis II
Cla_1541	PWY-5103	L-isoleucine biosynthesis III
Cla_1541	PWY-5104	L-isoleucine biosynthesis IV
Cla_1541	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cla_1567	PWY-6749	CMP-legionaminate biosynthesis I
