RIEPE_0002	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
RIEPE_0002	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
RIEPE_0006	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RIEPE_0006	PWY-6416	quinate degradation II
RIEPE_0006	PWY-6707	gallate biosynthesis
RIEPE_0015	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RIEPE_0015	PWY-6416	quinate degradation II
RIEPE_0015	PWY-6707	gallate biosynthesis
RIEPE_0019	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
RIEPE_0019	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
RIEPE_0023	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RIEPE_0023	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RIEPE_0032	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RIEPE_0032	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RIEPE_0032	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RIEPE_0032	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
RIEPE_0034	PWY-1042	glycolysis IV (plant cytosol)
RIEPE_0034	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RIEPE_0034	PWY-5484	glycolysis II (from fructose 6-phosphate)
RIEPE_0034	PWY-7385	1,3-propanediol biosynthesis (engineered)
RIEPE_0035	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RIEPE_0036	PWY-5392	reductive TCA cycle II
RIEPE_0036	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RIEPE_0036	PWY-5690	TCA cycle II (plants and fungi)
RIEPE_0036	PWY-5913	TCA cycle VI (obligate autotrophs)
RIEPE_0036	PWY-6728	methylaspartate cycle
RIEPE_0036	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RIEPE_0036	PWY-7254	TCA cycle VII (acetate-producers)
RIEPE_0036	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RIEPE_0039	PWY-7560	methylerythritol phosphate pathway II
RIEPE_0040	PWY-7560	methylerythritol phosphate pathway II
RIEPE_0051	PWY-6829	tRNA methylation (yeast)
RIEPE_0051	PWY-7285	methylwyosine biosynthesis
RIEPE_0051	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
RIEPE_0054	PWY-6840	homoglutathione biosynthesis
RIEPE_0054	PWY-7255	ergothioneine biosynthesis I (bacteria)
RIEPE_0062	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
RIEPE_0066	PWY-5958	acridone alkaloid biosynthesis
RIEPE_0066	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
RIEPE_0066	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
RIEPE_0071	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RIEPE_0071	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RIEPE_0071	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RIEPE_0071	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RIEPE_0071	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RIEPE_0071	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RIEPE_0071	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RIEPE_0071	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RIEPE_0072	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RIEPE_0072	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RIEPE_0072	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RIEPE_0072	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RIEPE_0072	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RIEPE_0072	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RIEPE_0072	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RIEPE_0072	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RIEPE_0073	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
RIEPE_0073	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
RIEPE_0073	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
RIEPE_0073	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
RIEPE_0073	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
RIEPE_0073	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
RIEPE_0073	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
RIEPE_0073	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
RIEPE_0073	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
RIEPE_0073	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
RIEPE_0085	PWY-5381	pyridine nucleotide cycling (plants)
RIEPE_0085	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
RIEPE_0089	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
RIEPE_0089	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
RIEPE_0090	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
RIEPE_0090	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
RIEPE_0090	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
RIEPE_0102	PWY-7310	D-glucosaminate degradation
RIEPE_0103	PWY-5958	acridone alkaloid biosynthesis
RIEPE_0103	PWY-6543	4-aminobenzoate biosynthesis
RIEPE_0103	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
RIEPE_0103	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
RIEPE_0103	PWY-6722	candicidin biosynthesis
RIEPE_0105	PWY-6749	CMP-legionaminate biosynthesis I
RIEPE_0107	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RIEPE_0111	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RIEPE_0112	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RIEPE_0112	PWY-6596	adenosine nucleotides degradation I
RIEPE_0112	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RIEPE_0113	PWY-6891	thiazole biosynthesis II (Bacillus)
RIEPE_0113	PWY-6892	thiazole biosynthesis I (E. coli)
RIEPE_0113	PWY-7560	methylerythritol phosphate pathway II
RIEPE_0116	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
RIEPE_0116	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RIEPE_0117	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RIEPE_0117	PWY-5723	Rubisco shunt
RIEPE_0127	PWY-1042	glycolysis IV (plant cytosol)
RIEPE_0127	PWY-5484	glycolysis II (from fructose 6-phosphate)
RIEPE_0127	PWY-6901	superpathway of glucose and xylose degradation
RIEPE_0127	PWY-7003	glycerol degradation to butanol
RIEPE_0128	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RIEPE_0128	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RIEPE_0128	PWY-5989	stearate biosynthesis II (bacteria and plants)
RIEPE_0128	PWY-6113	superpathway of mycolate biosynthesis
RIEPE_0128	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RIEPE_0128	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RIEPE_0128	PWY-7096	triclosan resistance
RIEPE_0128	PWYG-321	mycolate biosynthesis
RIEPE_0132	PWY-1042	glycolysis IV (plant cytosol)
RIEPE_0132	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RIEPE_0132	PWY-5484	glycolysis II (from fructose 6-phosphate)
RIEPE_0132	PWY-5723	Rubisco shunt
RIEPE_0132	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RIEPE_0132	PWY-6886	1-butanol autotrophic biosynthesis
RIEPE_0132	PWY-6901	superpathway of glucose and xylose degradation
RIEPE_0132	PWY-7003	glycerol degradation to butanol
RIEPE_0132	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
RIEPE_0132	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RIEPE_0136	PWY-6823	molybdenum cofactor biosynthesis
RIEPE_0136	PWY-6891	thiazole biosynthesis II (Bacillus)
RIEPE_0136	PWY-6892	thiazole biosynthesis I (E. coli)
RIEPE_0136	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
RIEPE_0142	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
RIEPE_0142	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
RIEPE_0142	PWY-6164	3-dehydroquinate biosynthesis I
RIEPE_0145	PWY-7183	pyrimidine nucleobases salvage I
RIEPE_0147	PWY-2941	L-lysine biosynthesis II
RIEPE_0147	PWY-2942	L-lysine biosynthesis III
RIEPE_0147	PWY-5097	L-lysine biosynthesis VI
RIEPE_0150	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RIEPE_0152	PWY-2941	L-lysine biosynthesis II
RIEPE_0152	PWY-2942	L-lysine biosynthesis III
RIEPE_0152	PWY-5097	L-lysine biosynthesis VI
RIEPE_0152	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RIEPE_0152	PWY-6559	spermidine biosynthesis II
RIEPE_0152	PWY-6562	norspermidine biosynthesis
RIEPE_0152	PWY-7153	grixazone biosynthesis
RIEPE_0152	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RIEPE_0167	PWY-3781	aerobic respiration I (cytochrome c)
RIEPE_0167	PWY-4521	arsenite oxidation I (respiratory)
RIEPE_0167	PWY-6692	Fe(II) oxidation
RIEPE_0167	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RIEPE_0167	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
RIEPE_0173	PWY-6891	thiazole biosynthesis II (Bacillus)
RIEPE_0173	PWY-6892	thiazole biosynthesis I (E. coli)
RIEPE_0173	PWY-7560	methylerythritol phosphate pathway II
RIEPE_0174	PWY-5269	cardiolipin biosynthesis II
RIEPE_0174	PWY-5668	cardiolipin biosynthesis I
RIEPE_0177	PWY-6167	flavin biosynthesis II (archaea)
RIEPE_0177	PWY-6168	flavin biosynthesis III (fungi)
RIEPE_0182	PWY-1281	sulfoacetaldehyde degradation I
RIEPE_0182	PWY-5482	pyruvate fermentation to acetate II
RIEPE_0182	PWY-5485	pyruvate fermentation to acetate IV
RIEPE_0182	PWY-5497	purine nucleobases degradation II (anaerobic)
RIEPE_0182	PWY-6637	sulfolactate degradation II
RIEPE_0184	PWY-6123	inosine-5'-phosphate biosynthesis I
RIEPE_0184	PWY-6124	inosine-5'-phosphate biosynthesis II
RIEPE_0184	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RIEPE_0184	PWY-7234	inosine-5'-phosphate biosynthesis III
RIEPE_0191	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
RIEPE_0193	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RIEPE_0200	PWY-5381	pyridine nucleotide cycling (plants)
RIEPE_0203	PWY-6599	guanine and guanosine salvage II
RIEPE_0203	PWY-6609	adenine and adenosine salvage III
RIEPE_0203	PWY-6610	adenine and adenosine salvage IV
RIEPE_0203	PWY-6620	guanine and guanosine salvage
RIEPE_0206	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RIEPE_0206	PWY-6148	tetrahydromethanopterin biosynthesis
RIEPE_0206	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
RIEPE_0206	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RIEPE_0209	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
RIEPE_0209	PWY-6153	autoinducer AI-2 biosynthesis I
RIEPE_0209	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
RIEPE_0212	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
RIEPE_0212	PWY-7177	UTP and CTP dephosphorylation II
RIEPE_0212	PWY-7185	UTP and CTP dephosphorylation I
RIEPE_0213	PWY-1042	glycolysis IV (plant cytosol)
RIEPE_0213	PWY-1622	formaldehyde assimilation I (serine pathway)
RIEPE_0213	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RIEPE_0213	PWY-5484	glycolysis II (from fructose 6-phosphate)
RIEPE_0213	PWY-5723	Rubisco shunt
RIEPE_0213	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RIEPE_0213	PWY-6886	1-butanol autotrophic biosynthesis
RIEPE_0213	PWY-6901	superpathway of glucose and xylose degradation
RIEPE_0213	PWY-7003	glycerol degradation to butanol
RIEPE_0213	PWY-7124	ethylene biosynthesis V (engineered)
RIEPE_0213	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
RIEPE_0214	PWY-5386	methylglyoxal degradation I
RIEPE_0218	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RIEPE_0218	PWY-5723	Rubisco shunt
RIEPE_0218	PWY-6891	thiazole biosynthesis II (Bacillus)
RIEPE_0218	PWY-6892	thiazole biosynthesis I (E. coli)
RIEPE_0218	PWY-6901	superpathway of glucose and xylose degradation
RIEPE_0218	PWY-7560	methylerythritol phosphate pathway II
RIEPE_0220	PWY-1042	glycolysis IV (plant cytosol)
RIEPE_0220	PWY-5484	glycolysis II (from fructose 6-phosphate)
RIEPE_0220	PWY-6886	1-butanol autotrophic biosynthesis
RIEPE_0220	PWY-6901	superpathway of glucose and xylose degradation
RIEPE_0220	PWY-7003	glycerol degradation to butanol
RIEPE_0221	PWY-1042	glycolysis IV (plant cytosol)
RIEPE_0221	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RIEPE_0221	PWY-5484	glycolysis II (from fructose 6-phosphate)
RIEPE_0221	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RIEPE_0221	PWY-7385	1,3-propanediol biosynthesis (engineered)
RIEPE_0225	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RIEPE_0230	PWY-3781	aerobic respiration I (cytochrome c)
RIEPE_0230	PWY-4302	aerobic respiration III (alternative oxidase pathway)
RIEPE_0230	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RIEPE_0230	PWY-5690	TCA cycle II (plants and fungi)
RIEPE_0230	PWY-6728	methylaspartate cycle
RIEPE_0230	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RIEPE_0230	PWY-7254	TCA cycle VII (acetate-producers)
RIEPE_0230	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RIEPE_0231	PWY-3781	aerobic respiration I (cytochrome c)
RIEPE_0231	PWY-4302	aerobic respiration III (alternative oxidase pathway)
RIEPE_0231	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RIEPE_0231	PWY-5690	TCA cycle II (plants and fungi)
RIEPE_0231	PWY-6728	methylaspartate cycle
RIEPE_0231	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RIEPE_0231	PWY-7254	TCA cycle VII (acetate-producers)
RIEPE_0231	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RIEPE_0232	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RIEPE_0233	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RIEPE_0234	PWY-5392	reductive TCA cycle II
RIEPE_0234	PWY-5537	pyruvate fermentation to acetate V
RIEPE_0234	PWY-5538	pyruvate fermentation to acetate VI
RIEPE_0234	PWY-5690	TCA cycle II (plants and fungi)
RIEPE_0234	PWY-5913	TCA cycle VI (obligate autotrophs)
RIEPE_0234	PWY-6728	methylaspartate cycle
RIEPE_0234	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RIEPE_0234	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RIEPE_0235	PWY-5392	reductive TCA cycle II
RIEPE_0235	PWY-5537	pyruvate fermentation to acetate V
RIEPE_0235	PWY-5538	pyruvate fermentation to acetate VI
RIEPE_0235	PWY-5690	TCA cycle II (plants and fungi)
RIEPE_0235	PWY-5913	TCA cycle VI (obligate autotrophs)
RIEPE_0235	PWY-6728	methylaspartate cycle
RIEPE_0235	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RIEPE_0235	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RIEPE_0237	PWY-1622	formaldehyde assimilation I (serine pathway)
RIEPE_0237	PWY-5484	glycolysis II (from fructose 6-phosphate)
RIEPE_0241	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RIEPE_0246	PWY-2941	L-lysine biosynthesis II
RIEPE_0246	PWY-5097	L-lysine biosynthesis VI
RIEPE_0249	PWY-5669	phosphatidylethanolamine biosynthesis I
RIEPE_0253	PWY-2781	<i>cis</i>-zeatin biosynthesis
RIEPE_0256	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RIEPE_0263	PWY-5988	wound-induced proteolysis I
RIEPE_0263	PWY-6018	seed germination protein turnover
RIEPE_0274	PWY-6749	CMP-legionaminate biosynthesis I
RIEPE_0275	PWY-6614	tetrahydrofolate biosynthesis
RIEPE_0290	PWY-6168	flavin biosynthesis III (fungi)
RIEPE_0290	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RIEPE_0300	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
RIEPE_0300	PWY-2201	folate transformations I
RIEPE_0300	PWY-3841	folate transformations II
RIEPE_0300	PWY-5030	L-histidine degradation III
RIEPE_0300	PWY-5497	purine nucleobases degradation II (anaerobic)
RIEPE_0300	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
RIEPE_0305	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RIEPE_0319	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
RIEPE_0319	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
RIEPE_0319	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
RIEPE_0326	PWY-6012	acyl carrier protein metabolism I
RIEPE_0326	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
RIEPE_0330	PWY-5381	pyridine nucleotide cycling (plants)
RIEPE_0330	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
RIEPE_0331	PWY-1622	formaldehyde assimilation I (serine pathway)
RIEPE_0331	PWY-181	photorespiration
RIEPE_0331	PWY-2161	folate polyglutamylation
RIEPE_0331	PWY-2201	folate transformations I
RIEPE_0331	PWY-3661	glycine betaine degradation I
RIEPE_0331	PWY-3661-1	glycine betaine degradation II (mammalian)
RIEPE_0331	PWY-3841	folate transformations II
RIEPE_0331	PWY-5497	purine nucleobases degradation II (anaerobic)
RIEPE_0337	PWY-7560	methylerythritol phosphate pathway II
RIEPE_0349	PWY-4381	fatty acid biosynthesis initiation I
RIEPE_0349	PWY-5743	3-hydroxypropanoate cycle
RIEPE_0349	PWY-5744	glyoxylate assimilation
RIEPE_0349	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RIEPE_0349	PWY-6679	jadomycin biosynthesis
RIEPE_0349	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RIEPE_0351	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RIEPE_0351	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RIEPE_0351	PWY-5989	stearate biosynthesis II (bacteria and plants)
RIEPE_0351	PWY-5994	palmitate biosynthesis I (animals and fungi)
RIEPE_0351	PWY-6113	superpathway of mycolate biosynthesis
RIEPE_0351	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RIEPE_0351	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RIEPE_0351	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RIEPE_0351	PWYG-321	mycolate biosynthesis
RIEPE_0357	PWY-7560	methylerythritol phosphate pathway II
RIEPE_0366	PWY-3841	folate transformations II
RIEPE_0366	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RIEPE_0366	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RIEPE_0366	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RIEPE_0366	PWY-7199	pyrimidine deoxyribonucleosides salvage
RIEPE_0366	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RIEPE_0377	PWY-3841	folate transformations II
RIEPE_0377	PWY-6614	tetrahydrofolate biosynthesis
RIEPE_0378	PWY-5667	CDP-diacylglycerol biosynthesis I
RIEPE_0378	PWY-5981	CDP-diacylglycerol biosynthesis III
RIEPE_0378	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
RIEPE_0378	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
RIEPE_0380	PWY-6167	flavin biosynthesis II (archaea)
RIEPE_0380	PWY-6168	flavin biosynthesis III (fungi)
RIEPE_0382	PWY-1042	glycolysis IV (plant cytosol)
RIEPE_0382	PWY-5484	glycolysis II (from fructose 6-phosphate)
RIEPE_0382	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RIEPE_0382	PWY-7003	glycerol degradation to butanol
RIEPE_0385	PWY-4261	glycerol degradation I
RIEPE_0394	PWY-4381	fatty acid biosynthesis initiation I
RIEPE_0395	PWY-4381	fatty acid biosynthesis initiation I
RIEPE_0395	PWY-6799	fatty acid biosynthesis (plant mitochondria)
RIEPE_0395	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RIEPE_0396	PWY-5367	petroselinate biosynthesis
RIEPE_0396	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RIEPE_0396	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RIEPE_0396	PWY-5989	stearate biosynthesis II (bacteria and plants)
RIEPE_0396	PWY-5994	palmitate biosynthesis I (animals and fungi)
RIEPE_0396	PWY-6113	superpathway of mycolate biosynthesis
RIEPE_0396	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RIEPE_0396	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RIEPE_0396	PWY-6951	RIEPE_0396|RIEPE_0396|YP_003603254.1|GeneID:9112235
RIEPE_0396	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
RIEPE_0396	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RIEPE_0396	PWYG-321	mycolate biosynthesis
RIEPE_0398	PWY-6543	4-aminobenzoate biosynthesis
RIEPE_0398	PWY-6722	candicidin biosynthesis
RIEPE_0399	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RIEPE_0399	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RIEPE_0399	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RIEPE_0399	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
RIEPE_0399	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RIEPE_0399	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RIEPE_0403	PWY-5269	cardiolipin biosynthesis II
RIEPE_0403	PWY-5668	cardiolipin biosynthesis I
RIEPE_0416	PWY-3961	phosphopantothenate biosynthesis II
RIEPE_0417	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
RIEPE_0417	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
RIEPE_0418	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RIEPE_0418	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RIEPE_0420	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RIEPE_0456	PWY-6167	flavin biosynthesis II (archaea)
RIEPE_0456	PWY-6168	flavin biosynthesis III (fungi)
RIEPE_0456	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RIEPE_0464	PWY-7560	methylerythritol phosphate pathway II
RIEPE_0467	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RIEPE_0470	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RIEPE_0470	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RIEPE_0470	PWY-5989	stearate biosynthesis II (bacteria and plants)
RIEPE_0470	PWY-5994	palmitate biosynthesis I (animals and fungi)
RIEPE_0470	PWY-6113	superpathway of mycolate biosynthesis
RIEPE_0470	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RIEPE_0470	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RIEPE_0470	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RIEPE_0470	PWYG-321	mycolate biosynthesis
RIEPE_0479	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RIEPE_0479	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RIEPE_0480	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RIEPE_0480	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RIEPE_0481	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RIEPE_0481	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RIEPE_0481	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RIEPE_0481	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RIEPE_0483	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RIEPE_0483	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RIEPE_0484	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RIEPE_0484	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RIEPE_0484	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RIEPE_0485	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RIEPE_0485	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RIEPE_0490	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
RIEPE_0490	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
RIEPE_0491	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RIEPE_0501	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RIEPE_0506	PWY-4381	fatty acid biosynthesis initiation I
RIEPE_0506	PWY-5743	3-hydroxypropanoate cycle
RIEPE_0506	PWY-5744	glyoxylate assimilation
RIEPE_0506	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RIEPE_0506	PWY-6679	jadomycin biosynthesis
RIEPE_0506	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RIEPE_0507	PWY-2161	folate polyglutamylation
RIEPE_0509	PWY-1281	sulfoacetaldehyde degradation I
RIEPE_0509	PWY-5482	pyruvate fermentation to acetate II
RIEPE_0509	PWY-5485	pyruvate fermentation to acetate IV
RIEPE_0509	PWY-5497	purine nucleobases degradation II (anaerobic)
RIEPE_0509	PWY-6637	sulfolactate degradation II
RIEPE_0510	PWY-5482	pyruvate fermentation to acetate II
RIEPE_0510	PWY-5485	pyruvate fermentation to acetate IV
RIEPE_0510	PWY-5497	purine nucleobases degradation II (anaerobic)
RIEPE_0519	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RIEPE_0519	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RIEPE_0520	PWY-3801	sucrose degradation II (sucrose synthase)
RIEPE_0520	PWY-5054	sorbitol biosynthesis I
RIEPE_0520	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
RIEPE_0520	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RIEPE_0520	PWY-5659	GDP-mannose biosynthesis
RIEPE_0520	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RIEPE_0520	PWY-621	sucrose degradation III (sucrose invertase)
RIEPE_0520	PWY-622	starch biosynthesis
RIEPE_0520	PWY-6531	mannitol cycle
RIEPE_0520	PWY-6981	chitin biosynthesis
RIEPE_0520	PWY-7238	sucrose biosynthesis II
RIEPE_0520	PWY-7347	sucrose biosynthesis III
RIEPE_0520	PWY-7385	1,3-propanediol biosynthesis (engineered)
RIEPE_0522	PWY-5667	CDP-diacylglycerol biosynthesis I
RIEPE_0522	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
RIEPE_0526	PWY-5269	cardiolipin biosynthesis II
RIEPE_0526	PWY-5668	cardiolipin biosynthesis I
RIEPE_0533	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RIEPE_0534	PWY-6164	3-dehydroquinate biosynthesis I
RIEPE_0536	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RIEPE_0536	PWY-5723	Rubisco shunt
RIEPE_0538	PWY-6854	ethylene biosynthesis III (microbes)
RIEPE_0542	PWY-5839	menaquinol-7 biosynthesis
RIEPE_0542	PWY-5844	menaquinol-9 biosynthesis
RIEPE_0542	PWY-5849	menaquinol-6 biosynthesis
RIEPE_0542	PWY-5890	menaquinol-10 biosynthesis
RIEPE_0542	PWY-5891	menaquinol-11 biosynthesis
RIEPE_0542	PWY-5892	menaquinol-12 biosynthesis
RIEPE_0542	PWY-5895	menaquinol-13 biosynthesis
RIEPE_0544	PWY-2941	L-lysine biosynthesis II
RIEPE_0544	PWY-2942	L-lysine biosynthesis III
RIEPE_0544	PWY-5097	L-lysine biosynthesis VI
RIEPE_0544	PWY-6559	spermidine biosynthesis II
RIEPE_0544	PWY-6562	norspermidine biosynthesis
RIEPE_0544	PWY-7153	grixazone biosynthesis
RIEPE_0545	PWY-2941	L-lysine biosynthesis II
RIEPE_0545	PWY-2942	L-lysine biosynthesis III
RIEPE_0545	PWY-5097	L-lysine biosynthesis VI
RIEPE_0545	PWY-6559	spermidine biosynthesis II
RIEPE_0545	PWY-6562	norspermidine biosynthesis
RIEPE_0545	PWY-7153	grixazone biosynthesis
RIEPE_0546	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RIEPE_0546	PWY-5723	Rubisco shunt
RIEPE_0552	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
RIEPE_0552	PWY-6167	flavin biosynthesis II (archaea)
RIEPE_0552	PWY-6168	flavin biosynthesis III (fungi)
RIEPE_0555	PWY-7560	methylerythritol phosphate pathway II
RIEPE_0556	PWY-2941	L-lysine biosynthesis II
RIEPE_0556	PWY-2942	L-lysine biosynthesis III
RIEPE_0556	PWY-5097	L-lysine biosynthesis VI
RIEPE_0563	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
RIEPE_0565	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RIEPE_0566	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
RIEPE_0570	PWY-5663	tetrahydrobiopterin biosynthesis I
RIEPE_0570	PWY-5664	tetrahydrobiopterin biosynthesis II
RIEPE_0570	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RIEPE_0570	PWY-6703	preQ<sub>0</sub> biosynthesis
RIEPE_0570	PWY-6983	tetrahydrobiopterin biosynthesis III
RIEPE_0570	PWY-7442	drosopterin and aurodrosopterin biosynthesis
RIEPE_0572	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RIEPE_0582	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RIEPE_0582	PWY-6148	tetrahydromethanopterin biosynthesis
RIEPE_0582	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
RIEPE_0582	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RIEPE_0592	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RIEPE_0592	PWY-6148	tetrahydromethanopterin biosynthesis
RIEPE_0592	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
RIEPE_0592	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
