Cfla_0016	PWY-6788	cellulose degradation II (fungi)
Cfla_0024	PWY-5958	acridone alkaloid biosynthesis
Cfla_0024	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Cfla_0024	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Cfla_0073	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cfla_0074	PWY-6728	methylaspartate cycle
Cfla_0074	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cfla_0074	PWY-7118	chitin degradation to ethanol
Cfla_0074	PWY-7294	xylose degradation IV
Cfla_0074	PWY-7295	L-arabinose degradation IV
Cfla_0081	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cfla_0105	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Cfla_0105	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Cfla_0105	PWY-6936	seleno-amino acid biosynthesis
Cfla_0105	PWY-702	L-methionine biosynthesis II
Cfla_0106	PWY-2201	folate transformations I
Cfla_0106	PWY-3841	folate transformations II
Cfla_0139	PWY-6788	cellulose degradation II (fungi)
Cfla_0147	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cfla_0185	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cfla_0185	PWY-5723	Rubisco shunt
Cfla_0244	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cfla_0245	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cfla_0246	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cfla_0296	PWY-5392	reductive TCA cycle II
Cfla_0296	PWY-5537	pyruvate fermentation to acetate V
Cfla_0296	PWY-5538	pyruvate fermentation to acetate VI
Cfla_0296	PWY-5690	TCA cycle II (plants and fungi)
Cfla_0296	PWY-5913	TCA cycle VI (obligate autotrophs)
Cfla_0296	PWY-6728	methylaspartate cycle
Cfla_0296	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cfla_0296	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cfla_0315	PWY-5663	tetrahydrobiopterin biosynthesis I
Cfla_0315	PWY-5664	tetrahydrobiopterin biosynthesis II
Cfla_0315	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cfla_0315	PWY-6703	preQ<sub>0</sub> biosynthesis
Cfla_0315	PWY-6983	tetrahydrobiopterin biosynthesis III
Cfla_0315	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Cfla_0321	PWY-7158	L-phenylalanine degradation V
Cfla_0330	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cfla_0330	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cfla_0376	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cfla_0390	PWY-4381	fatty acid biosynthesis initiation I
Cfla_0394	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cfla_0394	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cfla_0397	PWY-6683	sulfate reduction III (assimilatory)
Cfla_0398	PWY-1881	formate oxidation to CO<sub>2</sub>
Cfla_0398	PWY-5497	purine nucleobases degradation II (anaerobic)
Cfla_0398	PWY-6696	oxalate degradation III
Cfla_0417	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cfla_0417	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cfla_0418	PWY-5350	thiosulfate disproportionation III (rhodanese)
Cfla_0424	PWY-6825	phosphatidylcholine biosynthesis V
Cfla_0448	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cfla_0448	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cfla_0448	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cfla_0448	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cfla_0448	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cfla_0448	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cfla_0448	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cfla_0448	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Cfla_0450	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cfla_0450	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cfla_0450	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cfla_0450	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cfla_0450	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cfla_0450	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cfla_0450	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cfla_0450	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Cfla_0454	PWY-5350	thiosulfate disproportionation III (rhodanese)
Cfla_0456	PWY-6527	stachyose degradation
Cfla_0469	PWY-6825	phosphatidylcholine biosynthesis V
Cfla_0476	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cfla_0482	PWY-7183	pyrimidine nucleobases salvage I
Cfla_0493	PWY-6891	thiazole biosynthesis II (Bacillus)
Cfla_0493	PWY-6892	thiazole biosynthesis I (E. coli)
Cfla_0496	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Cfla_0496	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Cfla_0496	PWY-6897	thiamin salvage II
Cfla_0496	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Cfla_0496	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Cfla_0496	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Cfla_0496	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cfla_0531	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cfla_0531	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cfla_0532	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cfla_0533	PWY-6454	vancomycin resistance I
Cfla_0533	PWY-6455	vancomycin resistance II
Cfla_0539	PWY-5941	glycogen degradation II (eukaryotic)
Cfla_0539	PWY-622	starch biosynthesis
Cfla_0539	PWY-6731	starch degradation III
Cfla_0539	PWY-6737	starch degradation V
Cfla_0539	PWY-7238	sucrose biosynthesis II
Cfla_0558	PWY-4261	glycerol degradation I
Cfla_0560	PWY-4261	glycerol degradation I
Cfla_0560	PWY-6118	glycerol-3-phosphate shuttle
Cfla_0560	PWY-6952	glycerophosphodiester degradation
Cfla_0575	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cfla_0575	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cfla_0575	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cfla_0575	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Cfla_0575	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cfla_0575	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cfla_0601	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cfla_0601	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cfla_0609	PWY-5344	L-homocysteine biosynthesis
Cfla_0610	PWY-5344	L-homocysteine biosynthesis
Cfla_0610	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Cfla_0623	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cfla_0623	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cfla_0626	PWY-6599	guanine and guanosine salvage II
Cfla_0626	PWY-6609	adenine and adenosine salvage III
Cfla_0626	PWY-6610	adenine and adenosine salvage IV
Cfla_0626	PWY-6620	guanine and guanosine salvage
Cfla_0628	PWY-5663	tetrahydrobiopterin biosynthesis I
Cfla_0628	PWY-5664	tetrahydrobiopterin biosynthesis II
Cfla_0628	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cfla_0628	PWY-6703	preQ<sub>0</sub> biosynthesis
Cfla_0628	PWY-6983	tetrahydrobiopterin biosynthesis III
Cfla_0628	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Cfla_0629	PWY-6614	tetrahydrofolate biosynthesis
Cfla_0630	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cfla_0630	PWY-6148	tetrahydromethanopterin biosynthesis
Cfla_0630	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Cfla_0630	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Cfla_0636	PWY-5155	&beta;-alanine biosynthesis III
Cfla_0637	PWY-5316	nicotine biosynthesis
Cfla_0637	PWY-7342	superpathway of nicotine biosynthesis
Cfla_0638	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cfla_0638	PWY-6902	chitin degradation II
Cfla_0639	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cfla_0640	PWY-5316	nicotine biosynthesis
Cfla_0640	PWY-5381	pyridine nucleotide cycling (plants)
Cfla_0640	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Cfla_0640	PWY-7342	superpathway of nicotine biosynthesis
Cfla_0644	PWY-4261	glycerol degradation I
Cfla_0650	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cfla_0650	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cfla_0654	PWY-1622	formaldehyde assimilation I (serine pathway)
Cfla_0654	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cfla_0664	PWY-7560	methylerythritol phosphate pathway II
Cfla_0665	PWY-7560	methylerythritol phosphate pathway II
Cfla_0668	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cfla_0668	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cfla_0670	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cfla_0697	PWY-5704	urea degradation II
Cfla_0698	PWY-5704	urea degradation II
Cfla_0699	PWY-5704	urea degradation II
Cfla_0710	PWY-5169	cyanurate degradation
Cfla_0710	PWY-5703	urea degradation I
Cfla_0711	PWY-5169	cyanurate degradation
Cfla_0711	PWY-5703	urea degradation I
Cfla_0711	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Cfla_0732	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cfla_0732	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Cfla_0732	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cfla_0732	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cfla_0759	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
Cfla_0761	PWY-3821	galactose degradation III
Cfla_0761	PWY-6317	galactose degradation I (Leloir pathway)
Cfla_0761	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Cfla_0761	PWY-6527	stachyose degradation
Cfla_0761	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Cfla_0761	PWY-7344	UDP-D-galactose biosynthesis
Cfla_0779	PWY-3341	L-proline biosynthesis III
Cfla_0779	PWY-4981	L-proline biosynthesis II (from arginine)
Cfla_0779	PWY-6344	L-ornithine degradation II (Stickland reaction)
Cfla_0779	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Cfla_0780	PWY-4981	L-proline biosynthesis II (from arginine)
Cfla_0786	PWY-5530	sorbitol biosynthesis II
Cfla_0786	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cfla_0809	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cfla_0837	PWY-6823	molybdenum cofactor biosynthesis
Cfla_0840	PWY-3801	sucrose degradation II (sucrose synthase)
Cfla_0840	PWY-6527	stachyose degradation
Cfla_0840	PWY-6981	chitin biosynthesis
Cfla_0840	PWY-7238	sucrose biosynthesis II
Cfla_0840	PWY-7343	UDP-glucose biosynthesis
Cfla_0842	PWY-6902	chitin degradation II
Cfla_0848	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Cfla_0848	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Cfla_0848	PWY-5989	stearate biosynthesis II (bacteria and plants)
Cfla_0848	PWY-6113	superpathway of mycolate biosynthesis
Cfla_0848	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Cfla_0848	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cfla_0848	PWY-7096	triclosan resistance
Cfla_0848	PWYG-321	mycolate biosynthesis
Cfla_0849	PWY-723	alkylnitronates degradation
Cfla_0855	PWY-7560	methylerythritol phosphate pathway II
Cfla_0876	PWY-5530	sorbitol biosynthesis II
Cfla_0876	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cfla_0879	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
Cfla_0879	PWY-7248	pectin degradation III
Cfla_0880	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cfla_0905	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cfla_0907	PWY-1042	glycolysis IV (plant cytosol)
Cfla_0907	PWY-1622	formaldehyde assimilation I (serine pathway)
Cfla_0907	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cfla_0907	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cfla_0907	PWY-5723	Rubisco shunt
Cfla_0907	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cfla_0907	PWY-6886	1-butanol autotrophic biosynthesis
Cfla_0907	PWY-6901	superpathway of glucose and xylose degradation
Cfla_0907	PWY-7003	glycerol degradation to butanol
Cfla_0907	PWY-7124	ethylene biosynthesis V (engineered)
Cfla_0907	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Cfla_0925	PWY-801	L-homocysteine and L-cysteine interconversion
Cfla_0930	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cfla_0930	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cfla_0959	PWY-5392	reductive TCA cycle II
Cfla_0959	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cfla_0959	PWY-5690	TCA cycle II (plants and fungi)
Cfla_0959	PWY-5913	TCA cycle VI (obligate autotrophs)
Cfla_0959	PWY-6728	methylaspartate cycle
Cfla_0959	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cfla_0959	PWY-7254	TCA cycle VII (acetate-producers)
Cfla_0959	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cfla_0965	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Cfla_0965	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cfla_0965	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cfla_0965	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Cfla_0969	PWY-7560	methylerythritol phosphate pathway II
Cfla_0980	PWY-7158	L-phenylalanine degradation V
Cfla_1001	PWY-6614	tetrahydrofolate biosynthesis
Cfla_1004	PWY-5988	wound-induced proteolysis I
Cfla_1004	PWY-6018	seed germination protein turnover
Cfla_1014	PWY-3781	aerobic respiration I (cytochrome c)
Cfla_1014	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cfla_1014	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cfla_1014	PWY-5690	TCA cycle II (plants and fungi)
Cfla_1014	PWY-6728	methylaspartate cycle
Cfla_1014	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cfla_1014	PWY-7254	TCA cycle VII (acetate-producers)
Cfla_1014	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cfla_1015	PWY-3781	aerobic respiration I (cytochrome c)
Cfla_1015	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cfla_1015	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cfla_1015	PWY-5690	TCA cycle II (plants and fungi)
Cfla_1015	PWY-6728	methylaspartate cycle
Cfla_1015	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cfla_1015	PWY-7254	TCA cycle VII (acetate-producers)
Cfla_1015	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cfla_1025	PWY-7181	pyrimidine deoxyribonucleosides degradation
Cfla_1028	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Cfla_1030	PWY-6749	CMP-legionaminate biosynthesis I
Cfla_1031	PWY-4202	arsenate detoxification I (glutaredoxin)
Cfla_1031	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Cfla_1031	PWY-6608	guanosine nucleotides degradation III
Cfla_1031	PWY-6609	adenine and adenosine salvage III
Cfla_1031	PWY-6611	adenine and adenosine salvage V
Cfla_1031	PWY-6620	guanine and guanosine salvage
Cfla_1031	PWY-6627	salinosporamide A biosynthesis
Cfla_1031	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Cfla_1031	PWY-7179	purine deoxyribonucleosides degradation I
Cfla_1031	PWY-7179-1	purine deoxyribonucleosides degradation
Cfla_1041	PWY-4381	fatty acid biosynthesis initiation I
Cfla_1041	PWY-5743	3-hydroxypropanoate cycle
Cfla_1041	PWY-5744	glyoxylate assimilation
Cfla_1041	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cfla_1041	PWY-6679	jadomycin biosynthesis
Cfla_1041	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cfla_1042	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Cfla_1042	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Cfla_1049	PWY-3162	L-tryptophan degradation V (side chain pathway)
Cfla_1049	PWY-5057	L-valine degradation II
Cfla_1049	PWY-5076	L-leucine degradation III
Cfla_1049	PWY-5078	L-isoleucine degradation II
Cfla_1049	PWY-5079	L-phenylalanine degradation III
Cfla_1049	PWY-5082	L-methionine degradation III
Cfla_1049	PWY-5162	2-oxopentenoate degradation
Cfla_1049	PWY-5436	L-threonine degradation IV
Cfla_1049	PWY-5480	pyruvate fermentation to ethanol I
Cfla_1049	PWY-5486	pyruvate fermentation to ethanol II
Cfla_1049	PWY-5751	phenylethanol biosynthesis
Cfla_1049	PWY-6028	acetoin degradation
Cfla_1049	PWY-6313	serotonin degradation
Cfla_1049	PWY-6333	acetaldehyde biosynthesis I
Cfla_1049	PWY-6342	noradrenaline and adrenaline degradation
Cfla_1049	PWY-6587	pyruvate fermentation to ethanol III
Cfla_1049	PWY-6802	salidroside biosynthesis
Cfla_1049	PWY-6871	3-methylbutanol biosynthesis
Cfla_1049	PWY-7013	L-1,2-propanediol degradation
Cfla_1049	PWY-7085	triethylamine degradation
Cfla_1049	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cfla_1049	PWY-7118	chitin degradation to ethanol
Cfla_1049	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Cfla_1049	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Cfla_1049	PWY-7557	dehydrodiconiferyl alcohol degradation
Cfla_1053	PWY-2941	L-lysine biosynthesis II
Cfla_1053	PWY-2942	L-lysine biosynthesis III
Cfla_1053	PWY-5097	L-lysine biosynthesis VI
Cfla_1054	PWY-5874	heme degradation
Cfla_1054	PWY-5915	phycoerythrobilin biosynthesis I
Cfla_1054	PWY-5917	phycocyanobilin biosynthesis
Cfla_1054	PWY-7170	phytochromobilin biosynthesis
Cfla_1057	PWY-702	L-methionine biosynthesis II
Cfla_1058	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cfla_1064	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cfla_1064	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cfla_1064	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cfla_1070	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cfla_1072	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cfla_1082	PWY-6906	chitin derivatives degradation
Cfla_1082	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Cfla_1082	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Cfla_1084	PWY-3121	linamarin degradation
Cfla_1084	PWY-5176	coumarin biosynthesis (via 2-coumarate)
Cfla_1084	PWY-6002	lotaustralin degradation
Cfla_1084	PWY-6788	cellulose degradation II (fungi)
Cfla_1084	PWY-7089	taxiphyllin bioactivation
Cfla_1084	PWY-7091	linustatin bioactivation
Cfla_1084	PWY-7092	neolinustatin bioactivation
Cfla_1093	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
Cfla_1093	PWY-622	starch biosynthesis
Cfla_1094	PWY-6527	stachyose degradation
Cfla_1096	PWY-2622	trehalose biosynthesis IV
Cfla_1096	PWY-842	starch degradation I
Cfla_1098	PWY-5941	glycogen degradation II (eukaryotic)
Cfla_1098	PWY-622	starch biosynthesis
Cfla_1098	PWY-6731	starch degradation III
Cfla_1098	PWY-6737	starch degradation V
Cfla_1098	PWY-7238	sucrose biosynthesis II
Cfla_1105	PWY-6823	molybdenum cofactor biosynthesis
Cfla_1105	PWY-6891	thiazole biosynthesis II (Bacillus)
Cfla_1105	PWY-6892	thiazole biosynthesis I (E. coli)
Cfla_1105	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Cfla_1118	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Cfla_1130	PWY-5101	L-isoleucine biosynthesis II
Cfla_1130	PWY-5103	L-isoleucine biosynthesis III
Cfla_1130	PWY-5104	L-isoleucine biosynthesis IV
Cfla_1130	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cfla_1134	PWY-5101	L-isoleucine biosynthesis II
Cfla_1134	PWY-5103	L-isoleucine biosynthesis III
Cfla_1134	PWY-5104	L-isoleucine biosynthesis IV
Cfla_1134	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cfla_1155	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cfla_1155	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cfla_1163	PWY-5101	L-isoleucine biosynthesis II
Cfla_1163	PWY-5103	L-isoleucine biosynthesis III
Cfla_1163	PWY-5104	L-isoleucine biosynthesis IV
Cfla_1163	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Cfla_1163	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Cfla_1163	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Cfla_1163	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cfla_1164	PWY-5101	L-isoleucine biosynthesis II
Cfla_1164	PWY-5103	L-isoleucine biosynthesis III
Cfla_1164	PWY-5104	L-isoleucine biosynthesis IV
Cfla_1164	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Cfla_1164	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Cfla_1164	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Cfla_1164	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cfla_1165	PWY-5101	L-isoleucine biosynthesis II
Cfla_1165	PWY-5103	L-isoleucine biosynthesis III
Cfla_1165	PWY-5104	L-isoleucine biosynthesis IV
Cfla_1165	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cfla_1167	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Cfla_1168	PWY-5057	L-valine degradation II
Cfla_1168	PWY-5076	L-leucine degradation III
Cfla_1168	PWY-5078	L-isoleucine degradation II
Cfla_1168	PWY-5101	L-isoleucine biosynthesis II
Cfla_1168	PWY-5103	L-isoleucine biosynthesis III
Cfla_1168	PWY-5104	L-isoleucine biosynthesis IV
Cfla_1168	PWY-5108	L-isoleucine biosynthesis V
Cfla_1170	PWY-5101	L-isoleucine biosynthesis II
Cfla_1170	PWY-6871	3-methylbutanol biosynthesis
Cfla_1172	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Cfla_1172	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Cfla_1178	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cfla_1196	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cfla_1196	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cfla_1202	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cfla_1207	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cfla_1219	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Cfla_1299	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Cfla_1299	PWY-6153	autoinducer AI-2 biosynthesis I
Cfla_1299	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
Cfla_1300	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Cfla_1300	PWY-6153	autoinducer AI-2 biosynthesis I
Cfla_1300	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
Cfla_1311	PWY-3801	sucrose degradation II (sucrose synthase)
Cfla_1311	PWY-5054	sorbitol biosynthesis I
Cfla_1311	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Cfla_1311	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cfla_1311	PWY-5659	GDP-mannose biosynthesis
Cfla_1311	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cfla_1311	PWY-621	sucrose degradation III (sucrose invertase)
Cfla_1311	PWY-622	starch biosynthesis
Cfla_1311	PWY-6531	mannitol cycle
Cfla_1311	PWY-6981	chitin biosynthesis
Cfla_1311	PWY-7238	sucrose biosynthesis II
Cfla_1311	PWY-7347	sucrose biosynthesis III
Cfla_1311	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cfla_1320	PWY-5381	pyridine nucleotide cycling (plants)
Cfla_1323	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cfla_1323	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cfla_1327	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Cfla_1361	PWY-7310	D-glucosaminate degradation
Cfla_1369	PWY-5941	glycogen degradation II (eukaryotic)
Cfla_1369	PWY-6724	starch degradation II
Cfla_1369	PWY-6737	starch degradation V
Cfla_1369	PWY-7238	sucrose biosynthesis II
Cfla_1371	PWY-4061	glutathione-mediated detoxification I
Cfla_1371	PWY-6842	glutathione-mediated detoxification II
Cfla_1371	PWY-7112	4-hydroxy-2-nonenal detoxification
Cfla_1375	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cfla_1375	PWY-5723	Rubisco shunt
Cfla_1380	PWY-5344	L-homocysteine biosynthesis
Cfla_1380	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Cfla_1381	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Cfla_1381	PWY-7118	chitin degradation to ethanol
Cfla_1389	PWY-6936	seleno-amino acid biosynthesis
Cfla_1389	PWY-7274	D-cycloserine biosynthesis
Cfla_1390	PWY-6936	seleno-amino acid biosynthesis
Cfla_1396	PWY-3461	L-tyrosine biosynthesis II
Cfla_1396	PWY-3462	L-phenylalanine biosynthesis II
Cfla_1396	PWY-6120	L-tyrosine biosynthesis III
Cfla_1396	PWY-6627	salinosporamide A biosynthesis
Cfla_1413	PWY-5199	factor 420 polyglutamylation
Cfla_1456	PWY-2161	folate polyglutamylation
Cfla_1461	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cfla_1461	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Cfla_1461	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cfla_1461	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cfla_1461	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Cfla_1461	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cfla_1461	PWY-7205	CMP phosphorylation
Cfla_1461	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cfla_1461	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cfla_1461	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cfla_1461	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cfla_1461	PWY-7224	purine deoxyribonucleosides salvage
Cfla_1461	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cfla_1461	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Cfla_1473	PWY-6829	tRNA methylation (yeast)
Cfla_1473	PWY-7285	methylwyosine biosynthesis
Cfla_1473	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Cfla_1491	PWY-7560	methylerythritol phosphate pathway II
Cfla_1501	PWY-7560	methylerythritol phosphate pathway II
Cfla_1515	PWY-6788	cellulose degradation II (fungi)
Cfla_1516	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Cfla_1516	PWY-6167	flavin biosynthesis II (archaea)
Cfla_1516	PWY-6168	flavin biosynthesis III (fungi)
Cfla_1521	PWY-2941	L-lysine biosynthesis II
Cfla_1521	PWY-2942	L-lysine biosynthesis III
Cfla_1521	PWY-5097	L-lysine biosynthesis VI
Cfla_1527	PWY-3841	folate transformations II
Cfla_1527	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cfla_1527	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cfla_1527	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cfla_1527	PWY-7199	pyrimidine deoxyribonucleosides salvage
Cfla_1527	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cfla_1528	PWY-3841	folate transformations II
Cfla_1528	PWY-6614	tetrahydrofolate biosynthesis
Cfla_1529	PWY-2941	L-lysine biosynthesis II
Cfla_1529	PWY-2942	L-lysine biosynthesis III
Cfla_1529	PWY-5097	L-lysine biosynthesis VI
Cfla_1537	PWY-5269	cardiolipin biosynthesis II
Cfla_1537	PWY-5668	cardiolipin biosynthesis I
Cfla_1557	PWY-2781	<i>cis</i>-zeatin biosynthesis
Cfla_1558	PWY-2941	L-lysine biosynthesis II
Cfla_1558	PWY-5097	L-lysine biosynthesis VI
Cfla_1564	PWY-5481	pyruvate fermentation to lactate
Cfla_1564	PWY-6901	superpathway of glucose and xylose degradation
Cfla_1592	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cfla_1592	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cfla_1593	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cfla_1593	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cfla_1593	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cfla_1594	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cfla_1594	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cfla_1596	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cfla_1596	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Cfla_1596	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cfla_1596	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cfla_1596	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cfla_1596	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cfla_1622	PWY-5506	methanol oxidation to formaldehyde IV
Cfla_1634	PWY-6897	thiamin salvage II
Cfla_1634	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Cfla_1634	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cfla_1635	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Cfla_1635	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Cfla_1635	PWY-6897	thiamin salvage II
Cfla_1635	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Cfla_1635	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Cfla_1635	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Cfla_1635	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cfla_1636	PWY-6910	hydroxymethylpyrimidine salvage
Cfla_1636	PWY-7356	thiamin salvage IV (yeast)
Cfla_1636	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cfla_1641	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cfla_1641	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cfla_1642	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cfla_1643	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cfla_1643	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cfla_1645	PWY-4981	L-proline biosynthesis II (from arginine)
Cfla_1645	PWY-4984	urea cycle
Cfla_1645	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cfla_1647	PWY-4983	L-citrulline-nitric oxide cycle
Cfla_1647	PWY-4984	urea cycle
Cfla_1647	PWY-5	canavanine biosynthesis
Cfla_1647	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cfla_1647	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cfla_1648	PWY-4983	L-citrulline-nitric oxide cycle
Cfla_1648	PWY-4984	urea cycle
Cfla_1648	PWY-5	canavanine biosynthesis
Cfla_1648	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cfla_1648	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cfla_1658	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Cfla_1658	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cfla_1658	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Cfla_1660	PWY-6898	thiamin salvage III
Cfla_1660	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Cfla_1660	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Cfla_1664	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Cfla_1664	PWY-7177	UTP and CTP dephosphorylation II
Cfla_1664	PWY-7185	UTP and CTP dephosphorylation I
Cfla_1675	PWY-6823	molybdenum cofactor biosynthesis
Cfla_1675	PWY-6891	thiazole biosynthesis II (Bacillus)
Cfla_1675	PWY-6892	thiazole biosynthesis I (E. coli)
Cfla_1675	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Cfla_1687	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Cfla_1687	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Cfla_1687	PWY-5989	stearate biosynthesis II (bacteria and plants)
Cfla_1687	PWY-6113	superpathway of mycolate biosynthesis
Cfla_1687	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Cfla_1687	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cfla_1687	PWY-7096	triclosan resistance
Cfla_1687	PWYG-321	mycolate biosynthesis
Cfla_1690	PWY-622	starch biosynthesis
Cfla_1691	PWY-622	starch biosynthesis
Cfla_1694	PWY-5392	reductive TCA cycle II
Cfla_1694	PWY-5537	pyruvate fermentation to acetate V
Cfla_1694	PWY-5538	pyruvate fermentation to acetate VI
Cfla_1694	PWY-5690	TCA cycle II (plants and fungi)
Cfla_1694	PWY-5913	TCA cycle VI (obligate autotrophs)
Cfla_1694	PWY-6728	methylaspartate cycle
Cfla_1694	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cfla_1694	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cfla_1697	PWY-7199	pyrimidine deoxyribonucleosides salvage
Cfla_1703	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cfla_1703	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cfla_1703	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cfla_1703	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Cfla_1718	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Cfla_1718	PWY-6596	adenosine nucleotides degradation I
Cfla_1718	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cfla_1720	PWY-6891	thiazole biosynthesis II (Bacillus)
Cfla_1720	PWY-6892	thiazole biosynthesis I (E. coli)
Cfla_1720	PWY-7560	methylerythritol phosphate pathway II
Cfla_1721	PWY-5480	pyruvate fermentation to ethanol I
Cfla_1721	PWY-5485	pyruvate fermentation to acetate IV
Cfla_1721	PWY-5493	reductive monocarboxylic acid cycle
Cfla_1724	PWY-1361	benzoyl-CoA degradation I (aerobic)
Cfla_1724	PWY-5109	2-methylbutanoate biosynthesis
Cfla_1724	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Cfla_1724	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Cfla_1724	PWY-5177	glutaryl-CoA degradation
Cfla_1724	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cfla_1724	PWY-6435	4-hydroxybenzoate biosynthesis V
Cfla_1724	PWY-6583	pyruvate fermentation to butanol I
Cfla_1724	PWY-6863	pyruvate fermentation to hexanol
Cfla_1724	PWY-6883	pyruvate fermentation to butanol II
Cfla_1724	PWY-6944	androstenedione degradation
Cfla_1724	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Cfla_1724	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Cfla_1724	PWY-7007	methyl ketone biosynthesis
Cfla_1724	PWY-7046	4-coumarate degradation (anaerobic)
Cfla_1724	PWY-7094	fatty acid salvage
Cfla_1724	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Cfla_1724	PWY-735	jasmonic acid biosynthesis
Cfla_1724	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Cfla_1731	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cfla_1731	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cfla_1734	PWY-5194	siroheme biosynthesis
Cfla_1734	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cfla_1735	PWY-5278	sulfite oxidation III
Cfla_1735	PWY-5340	sulfate activation for sulfonation
Cfla_1735	PWY-6683	sulfate reduction III (assimilatory)
Cfla_1735	PWY-6932	selenate reduction
Cfla_1736	PWY-5278	sulfite oxidation III
Cfla_1736	PWY-5340	sulfate activation for sulfonation
Cfla_1736	PWY-6683	sulfate reduction III (assimilatory)
Cfla_1736	PWY-6932	selenate reduction
Cfla_1739	PWY-6683	sulfate reduction III (assimilatory)
Cfla_1741	PWY-2661	trehalose biosynthesis V
Cfla_1742	PWY-2661	trehalose biosynthesis V
Cfla_1753	PWY-6823	molybdenum cofactor biosynthesis
Cfla_1755	PWY-6823	molybdenum cofactor biosynthesis
Cfla_1756	PWY-6823	molybdenum cofactor biosynthesis
Cfla_1768	PWY-6523	nitrite-dependent anaerobic methane oxidation
Cfla_1768	PWY-6748	nitrate reduction VII (denitrification)
Cfla_1768	PWY-7084	nitrifier denitrification
Cfla_1772	PWY-6683	sulfate reduction III (assimilatory)
Cfla_1774	PWY-5194	siroheme biosynthesis
Cfla_1774	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cfla_1775	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cfla_1775	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cfla_1776	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cfla_1782	PWY-5381	pyridine nucleotide cycling (plants)
Cfla_1782	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Cfla_1789	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
Cfla_1792	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
Cfla_1800	PWY-6605	adenine and adenosine salvage II
Cfla_1800	PWY-6610	adenine and adenosine salvage IV
Cfla_1821	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cfla_1833	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cfla_1834	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cfla_1835	PWY-6164	3-dehydroquinate biosynthesis I
Cfla_1841	PWY-7183	pyrimidine nucleobases salvage I
Cfla_1842	PWY-5686	UMP biosynthesis
Cfla_1843	PWY-5686	UMP biosynthesis
Cfla_1845	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cfla_1845	PWY-5686	UMP biosynthesis
Cfla_1845	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cfla_1846	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cfla_1846	PWY-5686	UMP biosynthesis
Cfla_1846	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cfla_1847	PWY-5686	UMP biosynthesis
Cfla_1850	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cfla_1853	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Cfla_1853	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Cfla_1857	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cfla_1857	PWY-5723	Rubisco shunt
Cfla_1859	PWY-6167	flavin biosynthesis II (archaea)
Cfla_1859	PWY-6168	flavin biosynthesis III (fungi)
Cfla_1859	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cfla_1860	PWY-6167	flavin biosynthesis II (archaea)
Cfla_1860	PWY-6168	flavin biosynthesis III (fungi)
Cfla_1860	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Cfla_1861	PWY-6167	flavin biosynthesis II (archaea)
Cfla_1861	PWY-6168	flavin biosynthesis III (fungi)
Cfla_1890	PWY-5269	cardiolipin biosynthesis II
Cfla_1890	PWY-5668	cardiolipin biosynthesis I
Cfla_1908	PWY-7254	TCA cycle VII (acetate-producers)
Cfla_1916	PWY-3781	aerobic respiration I (cytochrome c)
Cfla_1916	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cfla_1916	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cfla_1916	PWY-5690	TCA cycle II (plants and fungi)
Cfla_1916	PWY-6728	methylaspartate cycle
Cfla_1916	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cfla_1916	PWY-7254	TCA cycle VII (acetate-producers)
Cfla_1916	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cfla_1917	PWY-3781	aerobic respiration I (cytochrome c)
Cfla_1917	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cfla_1917	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cfla_1917	PWY-5690	TCA cycle II (plants and fungi)
Cfla_1917	PWY-6728	methylaspartate cycle
Cfla_1917	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cfla_1917	PWY-7254	TCA cycle VII (acetate-producers)
Cfla_1917	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cfla_1926	PWY-7205	CMP phosphorylation
Cfla_1934	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cfla_1934	PWY-5723	Rubisco shunt
Cfla_1934	PWY-6891	thiazole biosynthesis II (Bacillus)
Cfla_1934	PWY-6892	thiazole biosynthesis I (E. coli)
Cfla_1934	PWY-6901	superpathway of glucose and xylose degradation
Cfla_1934	PWY-7560	methylerythritol phosphate pathway II
Cfla_1935	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cfla_1935	PWY-5723	Rubisco shunt
Cfla_1936	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cfla_1938	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cfla_1938	PWY-6855	chitin degradation I (archaea)
Cfla_1938	PWY-6906	chitin derivatives degradation
Cfla_1941	PWY-1042	glycolysis IV (plant cytosol)
Cfla_1941	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cfla_1941	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cfla_1941	PWY-7003	glycerol degradation to butanol
Cfla_1942	PWY-1042	glycolysis IV (plant cytosol)
Cfla_1942	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cfla_1942	PWY-6886	1-butanol autotrophic biosynthesis
Cfla_1942	PWY-6901	superpathway of glucose and xylose degradation
Cfla_1942	PWY-7003	glycerol degradation to butanol
Cfla_1943	PWY-1042	glycolysis IV (plant cytosol)
Cfla_1943	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cfla_1943	PWY-6901	superpathway of glucose and xylose degradation
Cfla_1943	PWY-7003	glycerol degradation to butanol
Cfla_1961	PWY-1042	glycolysis IV (plant cytosol)
Cfla_1961	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cfla_1961	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cfla_1961	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cfla_1980	PWY-1042	glycolysis IV (plant cytosol)
Cfla_1980	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cfla_1980	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cfla_1980	PWY-5723	Rubisco shunt
Cfla_1980	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cfla_1980	PWY-6886	1-butanol autotrophic biosynthesis
Cfla_1980	PWY-6901	superpathway of glucose and xylose degradation
Cfla_1980	PWY-7003	glycerol degradation to butanol
Cfla_1980	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Cfla_1980	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cfla_1992	PWY-5958	acridone alkaloid biosynthesis
Cfla_1992	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Cfla_1992	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Cfla_2005	PWY-6829	tRNA methylation (yeast)
Cfla_2024	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cfla_2048	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cfla_2065	PWY-6164	3-dehydroquinate biosynthesis I
Cfla_2066	PWY-1042	glycolysis IV (plant cytosol)
Cfla_2066	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cfla_2066	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cfla_2066	PWY-6531	mannitol cycle
Cfla_2066	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cfla_2069	PWY-2723	trehalose degradation V
Cfla_2069	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cfla_2069	PWY-5661	GDP-glucose biosynthesis
Cfla_2069	PWY-7238	sucrose biosynthesis II
Cfla_2069	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cfla_2079	PWY-6854	ethylene biosynthesis III (microbes)
Cfla_2080	PWY-3781	aerobic respiration I (cytochrome c)
Cfla_2080	PWY-4521	arsenite oxidation I (respiratory)
Cfla_2080	PWY-6692	Fe(II) oxidation
Cfla_2080	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cfla_2081	PWY-3781	aerobic respiration I (cytochrome c)
Cfla_2081	PWY-4521	arsenite oxidation I (respiratory)
Cfla_2081	PWY-6692	Fe(II) oxidation
Cfla_2081	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cfla_2083	PWY-6823	molybdenum cofactor biosynthesis
Cfla_2083	PWY-6891	thiazole biosynthesis II (Bacillus)
Cfla_2083	PWY-6892	thiazole biosynthesis I (E. coli)
Cfla_2083	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Cfla_2086	PWY-5316	nicotine biosynthesis
Cfla_2086	PWY-7342	superpathway of nicotine biosynthesis
Cfla_2095	PWY-5686	UMP biosynthesis
Cfla_2098	PWY-5988	wound-induced proteolysis I
Cfla_2098	PWY-6018	seed germination protein turnover
Cfla_2100	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Cfla_2100	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Cfla_2107	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Cfla_2107	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Cfla_2109	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Cfla_2109	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Cfla_2109	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Cfla_2112	PWY-381	nitrate reduction II (assimilatory)
Cfla_2112	PWY-5675	nitrate reduction V (assimilatory)
Cfla_2112	PWY-6549	L-glutamine biosynthesis III
Cfla_2112	PWY-6963	ammonia assimilation cycle I
Cfla_2112	PWY-6964	ammonia assimilation cycle II
Cfla_2114	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cfla_2114	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cfla_2119	PWY-381	nitrate reduction II (assimilatory)
Cfla_2119	PWY-5675	nitrate reduction V (assimilatory)
Cfla_2119	PWY-6549	L-glutamine biosynthesis III
Cfla_2119	PWY-6963	ammonia assimilation cycle I
Cfla_2119	PWY-6964	ammonia assimilation cycle II
Cfla_2120	PWY-6654	phosphopantothenate biosynthesis III
Cfla_2143	PWY-5663	tetrahydrobiopterin biosynthesis I
Cfla_2143	PWY-5664	tetrahydrobiopterin biosynthesis II
Cfla_2143	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cfla_2143	PWY-6703	preQ<sub>0</sub> biosynthesis
Cfla_2143	PWY-6983	tetrahydrobiopterin biosynthesis III
Cfla_2143	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Cfla_2147	PWY-6891	thiazole biosynthesis II (Bacillus)
Cfla_2147	PWY-6892	thiazole biosynthesis I (E. coli)
Cfla_2147	PWY-7560	methylerythritol phosphate pathway II
Cfla_2151	PWY-4381	fatty acid biosynthesis initiation I
Cfla_2177	PWY-6840	homoglutathione biosynthesis
Cfla_2177	PWY-7255	ergothioneine biosynthesis I (bacteria)
Cfla_2190	PWY-6871	3-methylbutanol biosynthesis
Cfla_2207	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Cfla_2207	PWY-6549	L-glutamine biosynthesis III
Cfla_2207	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cfla_2207	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Cfla_2241	PWY-4061	glutathione-mediated detoxification I
Cfla_2241	PWY-6842	glutathione-mediated detoxification II
Cfla_2241	PWY-7112	4-hydroxy-2-nonenal detoxification
Cfla_2241	PWY-7533	gliotoxin biosynthesis
Cfla_2248	PWY-1622	formaldehyde assimilation I (serine pathway)
Cfla_2248	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Cfla_2248	PWY-5913	TCA cycle VI (obligate autotrophs)
Cfla_2248	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cfla_2248	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Cfla_2248	PWY-6549	L-glutamine biosynthesis III
Cfla_2248	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cfla_2248	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Cfla_2248	PWY-7124	ethylene biosynthesis V (engineered)
Cfla_2277	PWY-5381	pyridine nucleotide cycling (plants)
Cfla_2277	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Cfla_2308	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Cfla_2308	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Cfla_2308	PWY-6896	thiamin salvage I
Cfla_2308	PWY-6897	thiamin salvage II
Cfla_2310	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cfla_2310	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cfla_2312	PWY-5667	CDP-diacylglycerol biosynthesis I
Cfla_2312	PWY-5981	CDP-diacylglycerol biosynthesis III
Cfla_2314	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cfla_2314	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cfla_2327	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cfla_2349	PWY-3221	dTDP-L-rhamnose biosynthesis II
Cfla_2349	PWY-6808	dTDP-D-forosamine biosynthesis
Cfla_2349	PWY-6942	dTDP-D-desosamine biosynthesis
Cfla_2349	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Cfla_2349	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Cfla_2349	PWY-6974	dTDP-L-olivose biosynthesis
Cfla_2349	PWY-6976	dTDP-L-mycarose biosynthesis
Cfla_2349	PWY-7104	dTDP-L-megosamine biosynthesis
Cfla_2349	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Cfla_2349	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Cfla_2349	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Cfla_2349	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Cfla_2349	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Cfla_2349	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Cfla_2349	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Cfla_2349	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Cfla_2366	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Cfla_2366	PWY-5739	GDP-D-perosamine biosynthesis
Cfla_2366	PWY-5740	GDP-L-colitose biosynthesis
Cfla_2366	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Cfla_2367	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Cfla_2367	PWY-5739	GDP-D-perosamine biosynthesis
Cfla_2367	PWY-5740	GDP-L-colitose biosynthesis
Cfla_2367	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Cfla_2382	PWY-3221	dTDP-L-rhamnose biosynthesis II
Cfla_2382	PWY-6808	dTDP-D-forosamine biosynthesis
Cfla_2382	PWY-6942	dTDP-D-desosamine biosynthesis
Cfla_2382	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Cfla_2382	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Cfla_2382	PWY-6974	dTDP-L-olivose biosynthesis
Cfla_2382	PWY-6976	dTDP-L-mycarose biosynthesis
Cfla_2382	PWY-7104	dTDP-L-megosamine biosynthesis
Cfla_2382	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Cfla_2382	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Cfla_2382	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Cfla_2382	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Cfla_2382	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Cfla_2382	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Cfla_2382	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Cfla_2382	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Cfla_2385	PWY-6123	inosine-5'-phosphate biosynthesis I
Cfla_2385	PWY-7234	inosine-5'-phosphate biosynthesis III
Cfla_2387	PWY-3861	mannitol degradation II
Cfla_2387	PWY-3881	mannitol biosynthesis
Cfla_2387	PWY-5659	GDP-mannose biosynthesis
Cfla_2387	PWY-7456	mannan degradation
Cfla_2387	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Cfla_2443	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
Cfla_2443	PWY-6853	ethylene biosynthesis II (microbes)
Cfla_2443	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Cfla_2471	PWY-5381	pyridine nucleotide cycling (plants)
Cfla_2487	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cfla_2489	PWY-6317	galactose degradation I (Leloir pathway)
Cfla_2489	PWY-6527	stachyose degradation
Cfla_2490	PWY-3821	galactose degradation III
Cfla_2490	PWY-6317	galactose degradation I (Leloir pathway)
Cfla_2490	PWY-6527	stachyose degradation
Cfla_2500	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Cfla_2500	PWY-2201	folate transformations I
Cfla_2500	PWY-3841	folate transformations II
Cfla_2500	PWY-5030	L-histidine degradation III
Cfla_2500	PWY-5497	purine nucleobases degradation II (anaerobic)
Cfla_2500	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Cfla_2501	PWY-1622	formaldehyde assimilation I (serine pathway)
Cfla_2501	PWY-181	photorespiration
Cfla_2501	PWY-2161	folate polyglutamylation
Cfla_2501	PWY-2201	folate transformations I
Cfla_2501	PWY-3661	glycine betaine degradation I
Cfla_2501	PWY-3661-1	glycine betaine degradation II (mammalian)
Cfla_2501	PWY-3841	folate transformations II
Cfla_2501	PWY-5497	purine nucleobases degradation II (anaerobic)
Cfla_2508	PWY-2201	folate transformations I
Cfla_2508	PWY-5497	purine nucleobases degradation II (anaerobic)
Cfla_2522	PWY-1622	formaldehyde assimilation I (serine pathway)
Cfla_2522	PWY-5392	reductive TCA cycle II
Cfla_2522	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cfla_2522	PWY-5690	TCA cycle II (plants and fungi)
Cfla_2522	PWY-5913	TCA cycle VI (obligate autotrophs)
Cfla_2522	PWY-6728	methylaspartate cycle
Cfla_2522	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cfla_2522	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cfla_2522	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cfla_2528	PWY-5913	TCA cycle VI (obligate autotrophs)
Cfla_2528	PWY-6549	L-glutamine biosynthesis III
Cfla_2528	PWY-6728	methylaspartate cycle
Cfla_2528	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cfla_2528	PWY-7124	ethylene biosynthesis V (engineered)
Cfla_2528	PWY-7254	TCA cycle VII (acetate-producers)
Cfla_2528	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cfla_2532	PWY-6123	inosine-5'-phosphate biosynthesis I
Cfla_2532	PWY-6124	inosine-5'-phosphate biosynthesis II
Cfla_2532	PWY-7234	inosine-5'-phosphate biosynthesis III
Cfla_2533	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cfla_2533	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Cfla_2536	PWY-5392	reductive TCA cycle II
Cfla_2536	PWY-5537	pyruvate fermentation to acetate V
Cfla_2536	PWY-5538	pyruvate fermentation to acetate VI
Cfla_2536	PWY-5690	TCA cycle II (plants and fungi)
Cfla_2536	PWY-5913	TCA cycle VI (obligate autotrophs)
Cfla_2536	PWY-6728	methylaspartate cycle
Cfla_2536	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cfla_2536	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cfla_2537	PWY-5392	reductive TCA cycle II
Cfla_2537	PWY-5537	pyruvate fermentation to acetate V
Cfla_2537	PWY-5538	pyruvate fermentation to acetate VI
Cfla_2537	PWY-5690	TCA cycle II (plants and fungi)
Cfla_2537	PWY-5913	TCA cycle VI (obligate autotrophs)
Cfla_2537	PWY-6728	methylaspartate cycle
Cfla_2537	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cfla_2537	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cfla_2551	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cfla_2577	PWY-1281	sulfoacetaldehyde degradation I
Cfla_2577	PWY-5482	pyruvate fermentation to acetate II
Cfla_2577	PWY-5485	pyruvate fermentation to acetate IV
Cfla_2577	PWY-5497	purine nucleobases degradation II (anaerobic)
Cfla_2577	PWY-6637	sulfolactate degradation II
Cfla_2578	PWY-5482	pyruvate fermentation to acetate II
Cfla_2578	PWY-5485	pyruvate fermentation to acetate IV
Cfla_2578	PWY-5497	purine nucleobases degradation II (anaerobic)
Cfla_2585	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Cfla_2585	PWY-6596	adenosine nucleotides degradation I
Cfla_2585	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cfla_2591	PWY-6840	homoglutathione biosynthesis
Cfla_2591	PWY-7255	ergothioneine biosynthesis I (bacteria)
Cfla_2596	PWY-5350	thiosulfate disproportionation III (rhodanese)
Cfla_2600	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cfla_2601	PWY-7193	pyrimidine ribonucleosides salvage I
Cfla_2602	PWY-6938	NADH repair
Cfla_2604	PWY-6012	acyl carrier protein metabolism I
Cfla_2604	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Cfla_2605	PWY-6749	CMP-legionaminate biosynthesis I
Cfla_2606	PWY-3961	phosphopantothenate biosynthesis II
Cfla_2611	PWY-6749	CMP-legionaminate biosynthesis I
Cfla_2632	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cfla_2688	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cfla_2688	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cfla_2718	PWY-5839	menaquinol-7 biosynthesis
Cfla_2718	PWY-5844	menaquinol-9 biosynthesis
Cfla_2718	PWY-5849	menaquinol-6 biosynthesis
Cfla_2718	PWY-5890	menaquinol-10 biosynthesis
Cfla_2718	PWY-5891	menaquinol-11 biosynthesis
Cfla_2718	PWY-5892	menaquinol-12 biosynthesis
Cfla_2718	PWY-5895	menaquinol-13 biosynthesis
Cfla_2720	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Cfla_2720	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Cfla_2720	PWY-5901	2,3-dihydroxybenzoate biosynthesis
Cfla_2720	PWY-6406	salicylate biosynthesis I
Cfla_2722	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Cfla_2722	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Cfla_2723	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Cfla_2723	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Cfla_2724	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Cfla_2724	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Cfla_2728	PWY-5839	menaquinol-7 biosynthesis
Cfla_2728	PWY-5851	demethylmenaquinol-9 biosynthesis
Cfla_2728	PWY-5852	demethylmenaquinol-8 biosynthesis I
Cfla_2728	PWY-5853	demethylmenaquinol-6 biosynthesis I
Cfla_2728	PWY-5890	menaquinol-10 biosynthesis
Cfla_2728	PWY-5891	menaquinol-11 biosynthesis
Cfla_2728	PWY-5892	menaquinol-12 biosynthesis
Cfla_2728	PWY-5895	menaquinol-13 biosynthesis
Cfla_2742	PWY-6527	stachyose degradation
Cfla_2757	PWY-3341	L-proline biosynthesis III
Cfla_2757	PWY-4981	L-proline biosynthesis II (from arginine)
Cfla_2757	PWY-6344	L-ornithine degradation II (Stickland reaction)
Cfla_2768	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cfla_2768	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cfla_2768	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cfla_2780	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Cfla_2781	PWY-5691	urate degradation to allantoin I
Cfla_2781	PWY-7394	urate degradation to allantoin II
Cfla_2782	PWY-5691	urate degradation to allantoin I
Cfla_2782	PWY-7394	urate degradation to allantoin II
Cfla_2783	PWY-5691	urate degradation to allantoin I
Cfla_2784	PWY-5686	UMP biosynthesis
Cfla_2784	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
Cfla_2784	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
Cfla_2785	PWY-6832	2-aminoethylphosphonate degradation II
Cfla_2810	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Cfla_2810	PWY-7118	chitin degradation to ethanol
Cfla_2861	PWY-5381	pyridine nucleotide cycling (plants)
Cfla_2861	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Cfla_2863	PWY-5381	pyridine nucleotide cycling (plants)
Cfla_2877	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cfla_2877	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cfla_2889	PWY-5943	&beta;-carotene biosynthesis
Cfla_2889	PWY-5947	lutein biosynthesis
Cfla_2890	PWY-5943	&beta;-carotene biosynthesis
Cfla_2890	PWY-5947	lutein biosynthesis
Cfla_2895	PWY-3821	galactose degradation III
Cfla_2895	PWY-6317	galactose degradation I (Leloir pathway)
Cfla_2895	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Cfla_2895	PWY-6527	stachyose degradation
Cfla_2895	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Cfla_2895	PWY-7344	UDP-D-galactose biosynthesis
Cfla_2907	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cfla_2907	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cfla_2907	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cfla_2908	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cfla_2908	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cfla_2908	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cfla_2908	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cfla_2917	PWY-6683	sulfate reduction III (assimilatory)
Cfla_2920	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cfla_2920	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cfla_2920	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cfla_2924	PWY-5506	methanol oxidation to formaldehyde IV
Cfla_2928	PWY-6910	hydroxymethylpyrimidine salvage
Cfla_2928	PWY-7356	thiamin salvage IV (yeast)
Cfla_2928	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cfla_2935	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Cfla_2935	PWY-6837	fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)
Cfla_2935	PWY-6920	6-gingerol analog biosynthesis
Cfla_2935	PWY-7007	methyl ketone biosynthesis
Cfla_2935	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
Cfla_2935	PWY-7291	oleate &beta;-oxidation (isomerase-dependent, yeast)
Cfla_2935	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
Cfla_2935	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
Cfla_2935	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
Cfla_2935	PWY-735	jasmonic acid biosynthesis
Cfla_2950	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cfla_2950	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cfla_2954	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cfla_2954	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cfla_2954	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cfla_2955	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cfla_2955	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cfla_2955	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cfla_2958	PWY-6123	inosine-5'-phosphate biosynthesis I
Cfla_2958	PWY-6124	inosine-5'-phosphate biosynthesis II
Cfla_2958	PWY-7234	inosine-5'-phosphate biosynthesis III
Cfla_2960	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cfla_2960	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cfla_2960	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cfla_2963	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cfla_2968	PWY-1042	glycolysis IV (plant cytosol)
Cfla_2968	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cfla_2968	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cfla_2968	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cfla_2968	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cfla_2976	PWY-5686	UMP biosynthesis
Cfla_2995	PWY-6807	xyloglucan degradation II (exoglucanase)
Cfla_3004	PWY-4041	&gamma;-glutamyl cycle
Cfla_3004	PWY-5826	hypoglycin biosynthesis
Cfla_3011	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cfla_3011	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Cfla_3011	PWY-7242	D-fructuronate degradation
Cfla_3011	PWY-7310	D-glucosaminate degradation
Cfla_3012	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
Cfla_3012	PWY-7248	pectin degradation III
Cfla_3022	PWY-6807	xyloglucan degradation II (exoglucanase)
Cfla_3024	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cfla_3031	PWY-6788	cellulose degradation II (fungi)
Cfla_3045	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
Cfla_3045	PWY-6174	mevalonate pathway II (archaea)
Cfla_3045	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
Cfla_3045	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
Cfla_3045	PWY-7102	bisabolene biosynthesis
Cfla_3045	PWY-7391	isoprene biosynthesis II (engineered)
Cfla_3045	PWY-7524	mevalonate pathway III (archaea)
Cfla_3045	PWY-7560	methylerythritol phosphate pathway II
Cfla_3045	PWY-922	mevalonate pathway I
Cfla_3070	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cfla_3070	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cfla_3115	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cfla_3115	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cfla_3118	PWY-2941	L-lysine biosynthesis II
Cfla_3118	PWY-2942	L-lysine biosynthesis III
Cfla_3118	PWY-5097	L-lysine biosynthesis VI
Cfla_3118	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cfla_3118	PWY-6559	spermidine biosynthesis II
Cfla_3118	PWY-6562	norspermidine biosynthesis
Cfla_3118	PWY-7153	grixazone biosynthesis
Cfla_3118	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cfla_3119	PWY-2941	L-lysine biosynthesis II
Cfla_3119	PWY-2942	L-lysine biosynthesis III
Cfla_3119	PWY-5097	L-lysine biosynthesis VI
Cfla_3119	PWY-6559	spermidine biosynthesis II
Cfla_3119	PWY-6562	norspermidine biosynthesis
Cfla_3119	PWY-7153	grixazone biosynthesis
Cfla_3135	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cfla_3135	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Cfla_3135	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cfla_3135	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cfla_3168	PWY-7456	mannan degradation
Cfla_3184	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Cfla_3185	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Cfla_3185	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cfla_3185	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Cfla_3187	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Cfla_3191	PWY-2723	trehalose degradation V
Cfla_3191	PWY-3801	sucrose degradation II (sucrose synthase)
Cfla_3191	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Cfla_3191	PWY-5661	GDP-glucose biosynthesis
Cfla_3191	PWY-5661-1	Cfla_3191
Cfla_3191	PWY-5940	streptomycin biosynthesis
Cfla_3191	PWY-5941	glycogen degradation II (eukaryotic)
Cfla_3191	PWY-622	starch biosynthesis
Cfla_3191	PWY-6731	starch degradation III
Cfla_3191	PWY-6737	starch degradation V
Cfla_3191	PWY-6749	CMP-legionaminate biosynthesis I
Cfla_3191	PWY-7238	sucrose biosynthesis II
Cfla_3191	PWY-7343	UDP-glucose biosynthesis
Cfla_3192	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Cfla_3193	PWY-7456	mannan degradation
Cfla_3198	PWY-5530	sorbitol biosynthesis II
Cfla_3198	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cfla_3202	PWY-5386	methylglyoxal degradation I
Cfla_3225	PWY-842	starch degradation I
Cfla_3343	PWY-6854	ethylene biosynthesis III (microbes)
Cfla_3361	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Cfla_3376	PWY-4202	arsenate detoxification I (glutaredoxin)
Cfla_3398	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Cfla_3401	PWY-621	sucrose degradation III (sucrose invertase)
Cfla_3429	PWY-6123	inosine-5'-phosphate biosynthesis I
Cfla_3429	PWY-6124	inosine-5'-phosphate biosynthesis II
Cfla_3429	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cfla_3429	PWY-7234	inosine-5'-phosphate biosynthesis III
Cfla_3434	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cfla_3435	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cfla_3435	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cfla_3437	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cfla_3437	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cfla_3438	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cfla_3438	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cfla_3439	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cfla_3439	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cfla_3440	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cfla_3464	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cfla_3464	PWY-6416	quinate degradation II
Cfla_3464	PWY-6707	gallate biosynthesis
Cfla_3475	PWY-1042	glycolysis IV (plant cytosol)
Cfla_3475	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cfla_3475	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cfla_3475	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cfla_3499	PWY-5659	GDP-mannose biosynthesis
Cfla_3499	PWY-7456	mannan degradation
Cfla_3499	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Cfla_3500	PWY-6834	spermidine biosynthesis III
Cfla_3531	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cfla_3547	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cfla_3558	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cfla_3563	PWY-6788	cellulose degradation II (fungi)
Cfla_3585	PWY-6749	CMP-legionaminate biosynthesis I
Cfla_3589	PWY-7193	pyrimidine ribonucleosides salvage I
Cfla_3600	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
Cfla_3603	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cfla_3603	PWY-5723	Rubisco shunt
Cfla_3604	PWY-5057	L-valine degradation II
Cfla_3604	PWY-5076	L-leucine degradation III
Cfla_3604	PWY-5078	L-isoleucine degradation II
Cfla_3604	PWY-5101	L-isoleucine biosynthesis II
Cfla_3604	PWY-5103	L-isoleucine biosynthesis III
Cfla_3604	PWY-5104	L-isoleucine biosynthesis IV
Cfla_3604	PWY-5108	L-isoleucine biosynthesis V
Cfla_3608	PWY-5340	sulfate activation for sulfonation
Cfla_3628	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cfla_3628	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cfla_3703	PWY-2301	<i>myo</i>-inositol biosynthesis
Cfla_3703	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
Cfla_3703	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
Cfla_3703	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
Cfla_3703	PWY-6664	di-myo-inositol phosphate biosynthesis
