CJA_0024 PWY-6871 3-methylbutanol biosynthesis
CJA_0041 PWY-1081 homogalacturonan degradation
CJA_0041 PWY-7246 pectin degradation II
CJA_0041 PWY-7248 pectin degradation III
CJA_0088 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol)
CJA_0089 PWY-3341 L-proline biosynthesis III
CJA_0089 PWY-4981 L-proline biosynthesis II (from arginine)
CJA_0089 PWY-6344 L-ornithine degradation II (Stickland reaction)
CJA_0102 PWY-5839 menaquinol-7 biosynthesis
CJA_0102 PWY-5844 menaquinol-9 biosynthesis
CJA_0102 PWY-5849 menaquinol-6 biosynthesis
CJA_0102 PWY-5890 menaquinol-10 biosynthesis
CJA_0102 PWY-5891 menaquinol-11 biosynthesis
CJA_0102 PWY-5892 menaquinol-12 biosynthesis
CJA_0102 PWY-5895 menaquinol-13 biosynthesis
CJA_0109 PWY-5971 palmitate biosynthesis II (bacteria and plants)
CJA_0109 PWY-5973 cis-vaccenate biosynthesis
CJA_0109 PWY-5989 stearate biosynthesis II (bacteria and plants)
CJA_0109 PWY-5994 palmitate biosynthesis I (animals and fungi)
CJA_0109 PWY-6113 superpathway of mycolate biosynthesis
CJA_0109 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CJA_0109 PWY-6519 8-amino-7-oxononanoate biosynthesis I
CJA_0109 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJA_0109 PWYG-321 mycolate biosynthesis
CJA_0116 PWY-5367 petroselinate biosynthesis
CJA_0116 PWY-5971 palmitate biosynthesis II (bacteria and plants)
CJA_0116 PWY-5973 cis-vaccenate biosynthesis
CJA_0116 PWY-5989 stearate biosynthesis II (bacteria and plants)
CJA_0116 PWY-5994 palmitate biosynthesis I (animals and fungi)
CJA_0116 PWY-6113 superpathway of mycolate biosynthesis
CJA_0116 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CJA_0116 PWY-6519 8-amino-7-oxononanoate biosynthesis I
CJA_0116 PWY-6951 CJA_0116
CJA_0116 PWY-7053 docosahexaenoate biosynthesis I (lower eukaryotes)
CJA_0116 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJA_0116 PWYG-321 mycolate biosynthesis
CJA_0119 PWY-5344 L-homocysteine biosynthesis
CJA_0122 PWY-7206 pyrimidine deoxyribonucleotides dephosphorylation
CJA_0152 PWY-5755 4-hydroxybenzoate biosynthesis II (microbes)
CJA_0152 PWY-5870 ubiquinol-8 biosynthesis (eukaryotic)
CJA_0152 PWY-6148 tetrahydromethanopterin biosynthesis
CJA_0164 PWY-6840 homoglutathione biosynthesis
CJA_0164 PWY-7255 ergothioneine biosynthesis I (bacteria)
CJA_0169 PWY-6507 4-deoxy-L-threo-hex-4-enopyranuronate degradation
CJA_0181 PWY-1081 homogalacturonan degradation
CJA_0181 PWY-7246 pectin degradation II
CJA_0181 PWY-7248 pectin degradation III
CJA_0183 PWY-5484 glycolysis II (from fructose 6-phosphate)
CJA_0184 PWY-1042 glycolysis IV (plant cytosol)
CJA_0184 PWY-1861 formaldehyde assimilation II (RuMP Cycle)
CJA_0184 PWY-5484 glycolysis II (from fructose 6-phosphate)
CJA_0184 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum)
CJA_0184 PWY-7385 1,3-propanediol biosynthesis (engineered)
CJA_0185 PWY-1042 glycolysis IV (plant cytosol)
CJA_0185 PWY-5484 glycolysis II (from fructose 6-phosphate)
CJA_0185 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum)
CJA_0185 PWY-7003 glycerol degradation to butanol
CJA_0205 PWY-2201 folate transformations I
CJA_0205 PWY-3841 folate transformations II
CJA_0206 PWY-5041 S-adenosyl-L-methionine cycle II
CJA_0207 PWY-5041 S-adenosyl-L-methionine cycle II
CJA_0207 PWY-5912 2'-deoxymugineic acid phytosiderophore biosynthesis
CJA_0210 PWY-1861 formaldehyde assimilation II (RuMP Cycle)
CJA_0210 PWY-5723 Rubisco shunt
CJA_0210 PWY-6891 thiazole biosynthesis II (Bacillus)
CJA_0210 PWY-6892 thiazole biosynthesis I (E. coli)
CJA_0210 PWY-6901 superpathway of glucose and xylose degradation
CJA_0210 PWY-7560 methylerythritol phosphate pathway II
CJA_0211 PWY-1042 glycolysis IV (plant cytosol)
CJA_0211 PWY-5484 glycolysis II (from fructose 6-phosphate)
CJA_0211 PWY-6886 1-butanol autotrophic biosynthesis
CJA_0211 PWY-6901 superpathway of glucose and xylose degradation
CJA_0211 PWY-7003 glycerol degradation to butanol
CJA_0236 PWY-7456 mannan degradation
CJA_0238 PWY-1861 formaldehyde assimilation II (RuMP Cycle)
CJA_0238 PWY-5723 Rubisco shunt
CJA_0242 PWY-7456 mannan degradation
CJA_0243 PWY-7456 mannan degradation
CJA_0246 PWY-6527 stachyose degradation
CJA_0251 PWY-4983 L-citrulline-nitric oxide cycle
CJA_0251 PWY-4984 urea cycle
CJA_0251 PWY-5 canavanine biosynthesis
CJA_0251 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline)
CJA_0251 PWY-7400 L-arginine biosynthesis IV (archaebacteria)
CJA_0267 PWY-6823 molybdenum cofactor biosynthesis
CJA_0272 PWY-5265 peptidoglycan biosynthesis II (staphylococci)
CJA_0272 PWY-6385 peptidoglycan biosynthesis III (mycobacteria)
CJA_0272 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance)
CJA_0272 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium)
CJA_0287 PWY-6902 chitin degradation II
CJA_0321 PWY-6823 molybdenum cofactor biosynthesis
CJA_0323 PWY-5194 siroheme biosynthesis
CJA_0323 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion)
CJA_0324 PWY-6683 sulfate reduction III (assimilatory)
CJA_0345 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol)
CJA_0350 PWY-6902 chitin degradation II
CJA_0361 PWY-7219 adenosine ribonucleotides de novo biosynthesis
CJA_0364 PWY-6936 seleno-amino acid biosynthesis
CJA_0364 PWY-7274 D-cycloserine biosynthesis
CJA_0374 PWY-6788 cellulose degradation II (fungi)
CJA_0385 PWY-6654 phosphopantothenate biosynthesis III
CJA_0387 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJA_0387 PWY-6148 tetrahydromethanopterin biosynthesis
CJA_0387 PWY-6797 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CJA_0387 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CJA_0417 PWY-6163 chorismate biosynthesis from 3-dehydroquinate
CJA_0418 PWY-6164 3-dehydroquinate biosynthesis I
CJA_0426 PWY-7380 biotin biosynthesis from 8-amino-7-oxononanoate II
CJA_0427 PWY-6519 8-amino-7-oxononanoate biosynthesis I
CJA_0427 PWY-6578 8-amino-7-oxononanoate biosynthesis III
CJA_0427 PWY-7147 8-amino-7-oxononanoate biosynthesis II
CJA_0428 PWY-6519 8-amino-7-oxononanoate biosynthesis I
CJA_0429 PWY-7380 biotin biosynthesis from 8-amino-7-oxononanoate II
CJA_0468 PWY-3841 folate transformations II
CJA_0468 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I
CJA_0468 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II
CJA_0468 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV
CJA_0468 PWY-7199 pyrimidine deoxyribonucleosides salvage
CJA_0468 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP
CJA_0469 PWY-3841 folate transformations II
CJA_0469 PWY-6614 tetrahydrofolate biosynthesis
CJA_0477 PWY-5101 L-isoleucine biosynthesis II
CJA_0477 PWY-5103 L-isoleucine biosynthesis III
CJA_0477 PWY-5104 L-isoleucine biosynthesis IV
CJA_0477 PWY-7111 pyruvate fermentation to isobutanol (engineered)
CJA_0479 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline)
CJA_0480 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline)
CJA_0496 PWY-6807 xyloglucan degradation II (exoglucanase)
CJA_0501 PWY-5057 L-valine degradation II
CJA_0501 PWY-5076 L-leucine degradation III
CJA_0501 PWY-5078 L-isoleucine degradation II
CJA_0501 PWY-5101 L-isoleucine biosynthesis II
CJA_0501 PWY-5103 L-isoleucine biosynthesis III
CJA_0501 PWY-5104 L-isoleucine biosynthesis IV
CJA_0501 PWY-5108 L-isoleucine biosynthesis V
CJA_0522 PWY-6936 seleno-amino acid biosynthesis
CJA_0522 PWY-7274 D-cycloserine biosynthesis
CJA_0532 PWY-6807 xyloglucan degradation II (exoglucanase)
CJA_0546 PWY-5497 purine nucleobases degradation II (anaerobic)
CJA_0546 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation
CJA_0546 PWY-6538 caffeine degradation III (bacteria, via demethylation)
CJA_0546 PWY-6596 adenosine nucleotides degradation I
CJA_0546 PWY-6606 guanosine nucleotides degradation II
CJA_0546 PWY-6607 guanosine nucleotides degradation I
CJA_0546 PWY-6608 guanosine nucleotides degradation III
CJA_0546 PWY-6999 theophylline degradation
CJA_0547 PWY-5497 purine nucleobases degradation II (anaerobic)
CJA_0547 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation
CJA_0547 PWY-6538 caffeine degradation III (bacteria, via demethylation)
CJA_0547 PWY-6596 adenosine nucleotides degradation I
CJA_0547 PWY-6606 guanosine nucleotides degradation II
CJA_0547 PWY-6607 guanosine nucleotides degradation I
CJA_0547 PWY-6608 guanosine nucleotides degradation III
CJA_0547 PWY-6999 theophylline degradation
CJA_0549 PWY-5691 urate degradation to allantoin I
CJA_0549 PWY-7394 urate degradation to allantoin II
CJA_0550 PWY-5691 urate degradation to allantoin I
CJA_0550 PWY-7394 urate degradation to allantoin II
CJA_0551 PWY-5497 purine nucleobases degradation II (anaerobic)
CJA_0551 PWY-6606 guanosine nucleotides degradation II
CJA_0551 PWY-6608 guanosine nucleotides degradation III
CJA_0551 PWY-7442 drosopterin and aurodrosopterin biosynthesis
CJA_0574 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation
CJA_0575 PWY-4041 γ-glutamyl cycle
CJA_0575 PWY-5826 hypoglycin biosynthesis
CJA_0577 PWY-6832 2-aminoethylphosphonate degradation II
CJA_0578 PWY-6610 adenine and adenosine salvage IV
CJA_0584 PWY-6610 adenine and adenosine salvage IV
CJA_0627 PWY-6163 chorismate biosynthesis from 3-dehydroquinate
CJA_0646 PWY-7560 methylerythritol phosphate pathway II
CJA_0651 PWY-5188 tetrapyrrole biosynthesis I (from glutamate)
CJA_0659 PWY-5265 peptidoglycan biosynthesis II (staphylococci)
CJA_0659 PWY-6385 peptidoglycan biosynthesis III (mycobacteria)
CJA_0659 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance)
CJA_0659 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium)
CJA_0664 PWY-5101 L-isoleucine biosynthesis II
CJA_0664 PWY-5103 L-isoleucine biosynthesis III
CJA_0664 PWY-5104 L-isoleucine biosynthesis IV
CJA_0664 PWY-5938 (R)-acetoin biosynthesis I
CJA_0664 PWY-5939 (R)-acetoin biosynthesis II
CJA_0664 PWY-6389 (S)-acetoin biosynthesis
CJA_0664 PWY-7111 pyruvate fermentation to isobutanol (engineered)
CJA_0665 PWY-5101 L-isoleucine biosynthesis II
CJA_0665 PWY-5103 L-isoleucine biosynthesis III
CJA_0665 PWY-5104 L-isoleucine biosynthesis IV
CJA_0665 PWY-5938 (R)-acetoin biosynthesis I
CJA_0665 PWY-5939 (R)-acetoin biosynthesis II
CJA_0665 PWY-6389 (S)-acetoin biosynthesis
CJA_0665 PWY-7111 pyruvate fermentation to isobutanol (engineered)
CJA_0668 PWY-5101 L-isoleucine biosynthesis II
CJA_0668 PWY-5103 L-isoleucine biosynthesis III
CJA_0668 PWY-5104 L-isoleucine biosynthesis IV
CJA_0668 PWY-7111 pyruvate fermentation to isobutanol (engineered)
CJA_0669 PWY-5669 phosphatidylethanolamine biosynthesis I
CJA_0676 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol)
CJA_0677 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus)
CJA_0677 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CJA_0678 PWY-3961 phosphopantothenate biosynthesis II
CJA_0731 PWY-5767 CJA_0731
CJA_0750 PWY-5971 palmitate biosynthesis II (bacteria and plants)
CJA_0750 PWY-5973 cis-vaccenate biosynthesis
CJA_0750 PWY-5989 stearate biosynthesis II (bacteria and plants)
CJA_0750 PWY-5994 palmitate biosynthesis I (animals and fungi)
CJA_0750 PWY-6113 superpathway of mycolate biosynthesis
CJA_0750 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CJA_0750 PWY-6519 8-amino-7-oxononanoate biosynthesis I
CJA_0750 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJA_0750 PWYG-321 mycolate biosynthesis
CJA_0752 PWY-6012 acyl carrier protein metabolism I
CJA_0752 PWY-6012-1 acyl carrier protein metabolism II (mammalian)
CJA_0762 PWY-6823 molybdenum cofactor biosynthesis
CJA_0769 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJA_0769 PWY-6148 tetrahydromethanopterin biosynthesis
CJA_0769 PWY-6797 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CJA_0769 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CJA_0770 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJA_0770 PWY-6148 tetrahydromethanopterin biosynthesis
CJA_0770 PWY-6797 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CJA_0770 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CJA_0777 PWY-3821 galactose degradation III
CJA_0777 PWY-6317 galactose degradation I (Leloir pathway)
CJA_0777 PWY-6397 mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CJA_0777 PWY-6527 stachyose degradation
CJA_0777 PWY-7328 superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CJA_0777 PWY-7344 UDP-D-galactose biosynthesis
CJA_0786 PWY-5381 pyridine nucleotide cycling (plants)
CJA_0786 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CJA_0793 PWY-5265 peptidoglycan biosynthesis II (staphylococci)
CJA_0793 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium)
CJA_0796 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus)
CJA_0796 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CJA_0797 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus)
CJA_0797 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CJA_0797 PWY-7382 lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CJA_0807 PWY-2723 trehalose degradation V
CJA_0807 PWY-6317 galactose degradation I (Leloir pathway)
CJA_0807 PWY-6737 starch degradation V
CJA_0843 PWY-4702 phytate degradation I
CJA_0846 PWY-5530 sorbitol biosynthesis II
CJA_0866 PWY-3781 aerobic respiration I (cytochrome c)
CJA_0866 PWY-4521 arsenite oxidation I (respiratory)
CJA_0866 PWY-6692 Fe(II) oxidation
CJA_0866 PWY-7279 aerobic respiration II (cytochrome c) (yeast)
CJA_0880 PWY-5188 tetrapyrrole biosynthesis I (from glutamate)
CJA_0881 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus)
CJA_0881 PWY-6894 thiamin diphosphate biosynthesis I (E. coli)
CJA_0881 PWY-6897 thiamin salvage II
CJA_0881 PWY-6907 thiamin diphosphate biosynthesis III (Staphylococcus)
CJA_0881 PWY-6908 thiamin diphosphate biosynthesis IV (eukaryotes)
CJA_0881 PWY-7353 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast)
CJA_0881 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast)
CJA_0885 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline)
CJA_0885 PWY-7400 L-arginine biosynthesis IV (archaebacteria)
CJA_0988 PWY-6902 chitin degradation II
CJA_0996 PWY-6902 chitin degradation II
CJA_1044 PWY-5392 reductive TCA cycle II
CJA_1044 PWY-5537 pyruvate fermentation to acetate V
CJA_1044 PWY-5538 pyruvate fermentation to acetate VI
CJA_1044 PWY-5690 TCA cycle II (plants and fungi)
CJA_1044 PWY-5913 TCA cycle VI (obligate autotrophs)
CJA_1044 PWY-6728 methylaspartate cycle
CJA_1044 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJA_1044 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial)
CJA_1073 PWY-5663 tetrahydrobiopterin biosynthesis I
CJA_1073 PWY-5664 tetrahydrobiopterin biosynthesis II
CJA_1073 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJA_1073 PWY-6703 preQ0 biosynthesis
CJA_1073 PWY-6983 tetrahydrobiopterin biosynthesis III
CJA_1073 PWY-7442 drosopterin and aurodrosopterin biosynthesis
CJA_1080 PWY-6683 sulfate reduction III (assimilatory)
CJA_1090 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJA_1090 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)
CJA_1107 PWY-6854 ethylene biosynthesis III (microbes)
CJA_1109 PWY-7242 D-fructuronate degradation
CJA_1118 PWY-7560 methylerythritol phosphate pathway II
CJA_1123 PWY-5971 palmitate biosynthesis II (bacteria and plants)
CJA_1123 PWY-5973 cis-vaccenate biosynthesis
CJA_1123 PWY-5989 stearate biosynthesis II (bacteria and plants)
CJA_1123 PWY-5994 palmitate biosynthesis I (animals and fungi)
CJA_1123 PWY-6113 superpathway of mycolate biosynthesis
CJA_1123 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CJA_1123 PWY-6519 8-amino-7-oxononanoate biosynthesis I
CJA_1123 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJA_1123 PWYG-321 mycolate biosynthesis
CJA_1129 PWY-4381 fatty acid biosynthesis initiation I
CJA_1129 PWY-5743 3-hydroxypropanoate cycle
CJA_1129 PWY-5744 glyoxylate assimilation
CJA_1129 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle
CJA_1129 PWY-6679 jadomycin biosynthesis
CJA_1129 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJA_1145 PWY-6123 inosine-5'-phosphate biosynthesis I
CJA_1145 PWY-7234 inosine-5'-phosphate biosynthesis III
CJA_1163 PWY-6906 chitin derivatives degradation
CJA_1163 PWY-7077 N-acetyl-D-galactosamine degradation
CJA_1163 PWY-7395 D-galactosamine and N-acetyl-D-galactosamine degradation
CJA_1164 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II
CJA_1164 PWY-6855 chitin degradation I (archaea)
CJA_1164 PWY-6906 chitin derivatives degradation
CJA_1199 PWY-723 alkylnitronates degradation
CJA_1243 PWY-5169 cyanurate degradation
CJA_1243 PWY-5703 urea degradation I
CJA_1244 PWY-5169 cyanurate degradation
CJA_1244 PWY-5703 urea degradation I
CJA_1244 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation
CJA_1336 PWY-6891 thiazole biosynthesis II (Bacillus)
CJA_1336 PWY-6892 thiazole biosynthesis I (E. coli)
CJA_1336 PWY-7560 methylerythritol phosphate pathway II
CJA_1340 PWY-5964 guanylyl molybdenum cofactor biosynthesis
CJA_1341 PWY-7204 pyridoxal 5'-phosphate salvage II (plants)
CJA_1341 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CJA_1347 PWY-7437 protein O-[N-acetyl]-glucosylation
CJA_1348 PWY-3801 sucrose degradation II (sucrose synthase)
CJA_1348 PWY-5054 sorbitol biosynthesis I
CJA_1348 PWY-5384 sucrose degradation IV (sucrose phosphorylase)
CJA_1348 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II
CJA_1348 PWY-5659 GDP-mannose biosynthesis
CJA_1348 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum)
CJA_1348 PWY-621 sucrose degradation III (sucrose invertase)
CJA_1348 PWY-622 starch biosynthesis
CJA_1348 PWY-6531 mannitol cycle
CJA_1348 PWY-6981 chitin biosynthesis
CJA_1348 PWY-7238 sucrose biosynthesis II
CJA_1348 PWY-7347 sucrose biosynthesis III
CJA_1348 PWY-7385 1,3-propanediol biosynthesis (engineered)
CJA_1349 PWY-5101 L-isoleucine biosynthesis II
CJA_1349 PWY-5103 L-isoleucine biosynthesis III
CJA_1349 PWY-5104 L-isoleucine biosynthesis IV
CJA_1349 PWY-7111 pyruvate fermentation to isobutanol (engineered)
CJA_1350 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CJA_1351 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II
CJA_1351 PWY-6855 chitin degradation I (archaea)
CJA_1351 PWY-6906 chitin derivatives degradation
CJA_1352 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative)
CJA_1352 PWY-6507 4-deoxy-L-threo-hex-4-enopyranuronate degradation
CJA_1352 PWY-7242 D-fructuronate degradation
CJA_1352 PWY-7310 D-glucosaminate degradation
CJA_1353 PWY-1042 glycolysis IV (plant cytosol)
CJA_1353 PWY-5484 glycolysis II (from fructose 6-phosphate)
CJA_1353 PWY-6901 superpathway of glucose and xylose degradation
CJA_1353 PWY-7003 glycerol degradation to butanol
CJA_1354 PWY-1042 glycolysis IV (plant cytosol)
CJA_1354 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative)
CJA_1354 PWY-5484 glycolysis II (from fructose 6-phosphate)
CJA_1354 PWY-5723 Rubisco shunt
CJA_1354 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum)
CJA_1354 PWY-6886 1-butanol autotrophic biosynthesis
CJA_1354 PWY-6901 superpathway of glucose and xylose degradation
CJA_1354 PWY-7003 glycerol degradation to butanol
CJA_1354 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CJA_1354 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol)
CJA_1360 PWY-2941 L-lysine biosynthesis II
CJA_1360 PWY-2942 L-lysine biosynthesis III
CJA_1360 PWY-5097 L-lysine biosynthesis VI
CJA_1360 PWY-6559 spermidine biosynthesis II
CJA_1360 PWY-6562 norspermidine biosynthesis
CJA_1360 PWY-7153 grixazone biosynthesis
CJA_1375 PWY-7545 pyruvate to cytochrome bd terminal oxidase electron transfer
CJA_1379 PWY-5188 tetrapyrrole biosynthesis I (from glutamate)
CJA_1403 PWY-5491 diethylphosphate degradation
CJA_1422 PWY-5265 peptidoglycan biosynthesis II (staphylococci)
CJA_1422 PWY-6385 peptidoglycan biosynthesis III (mycobacteria)
CJA_1422 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance)
CJA_1422 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium)
CJA_1435 PWY-6829 tRNA methylation (yeast)
CJA_1435 PWY-7285 methylwyosine biosynthesis
CJA_1435 PWY-7286 7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CJA_1448 PWY-5988 wound-induced proteolysis I
CJA_1448 PWY-6018 seed germination protein turnover
CJA_1456 PWY-6700 queuosine biosynthesis
CJA_1457 PWY-6700 queuosine biosynthesis
CJA_1463 PWY-2301 myo-inositol biosynthesis
CJA_1463 PWY-4702 phytate degradation I
CJA_1463 PWY-6363 D-myo-inositol (1,4,5)-trisphosphate degradation
CJA_1466 PWY-6823 molybdenum cofactor biosynthesis
CJA_1466 PWY-6891 thiazole biosynthesis II (Bacillus)
CJA_1466 PWY-6892 thiazole biosynthesis I (E. coli)
CJA_1466 PWY-7250 [2Fe-2S] iron-sulfur cluster biosynthesis
CJA_1470 PWY-6823 molybdenum cofactor biosynthesis
CJA_1470 PWY-6891 thiazole biosynthesis II (Bacillus)
CJA_1470 PWY-6892 thiazole biosynthesis I (E. coli)
CJA_1470 PWY-7250 [2Fe-2S] iron-sulfur cluster biosynthesis
CJA_1477 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III
CJA_1477 PWY-7176 UTP and CTP de novo biosynthesis
CJA_1477 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I
CJA_1477 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II
CJA_1477 PWY-7197 pyrimidine deoxyribonucleotide phosphorylation
CJA_1477 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV
CJA_1477 PWY-7205 CMP phosphorylation
CJA_1477 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP
CJA_1477 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II
CJA_1477 PWY-7221 guanosine ribonucleotides de novo biosynthesis
CJA_1477 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II
CJA_1477 PWY-7224 purine deoxyribonucleosides salvage
CJA_1477 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I
CJA_1477 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis
CJA_1481 PWY-7560 methylerythritol phosphate pathway II
CJA_1489 PWY-1861 formaldehyde assimilation II (RuMP Cycle)
CJA_1489 PWY-5723 Rubisco shunt
CJA_1493 PWY-6823 molybdenum cofactor biosynthesis
CJA_1496 PWY-2723 trehalose degradation V
CJA_1496 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II
CJA_1496 PWY-5661 GDP-glucose biosynthesis
CJA_1496 PWY-7238 sucrose biosynthesis II
CJA_1496 PWY-7385 1,3-propanediol biosynthesis (engineered)
CJA_1503 PWY-3781 aerobic respiration I (cytochrome c)
CJA_1503 PWY-4302 aerobic respiration III (alternative oxidase pathway)
CJA_1503 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation
CJA_1503 PWY-5690 TCA cycle II (plants and fungi)
CJA_1503 PWY-6728 methylaspartate cycle
CJA_1503 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJA_1503 PWY-7254 TCA cycle VII (acetate-producers)
CJA_1503 PWY-7279 aerobic respiration II (cytochrome c) (yeast)
CJA_1504 PWY-3781 aerobic respiration I (cytochrome c)
CJA_1504 PWY-4302 aerobic respiration III (alternative oxidase pathway)
CJA_1504 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation
CJA_1504 PWY-5690 TCA cycle II (plants and fungi)
CJA_1504 PWY-6728 methylaspartate cycle
CJA_1504 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJA_1504 PWY-7254 TCA cycle VII (acetate-producers)
CJA_1504 PWY-7279 aerobic respiration II (cytochrome c) (yeast)
CJA_1505 PWY-5084 2-oxoglutarate decarboxylation to succinyl-CoA
CJA_1506 PWY-5084 2-oxoglutarate decarboxylation to succinyl-CoA
CJA_1507 PWY-5046 2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CJA_1507 PWY-5084 2-oxoglutarate decarboxylation to succinyl-CoA
CJA_1508 PWY-5392 reductive TCA cycle II
CJA_1508 PWY-5537 pyruvate fermentation to acetate V
CJA_1508 PWY-5538 pyruvate fermentation to acetate VI
CJA_1508 PWY-5690 TCA cycle II (plants and fungi)
CJA_1508 PWY-5913 TCA cycle VI (obligate autotrophs)
CJA_1508 PWY-6728 methylaspartate cycle
CJA_1508 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJA_1508 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial)
CJA_1510 PWY-5392 reductive TCA cycle II
CJA_1510 PWY-5537 pyruvate fermentation to acetate V
CJA_1510 PWY-5538 pyruvate fermentation to acetate VI
CJA_1510 PWY-5690 TCA cycle II (plants and fungi)
CJA_1510 PWY-5913 TCA cycle VI (obligate autotrophs)
CJA_1510 PWY-6728 methylaspartate cycle
CJA_1510 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJA_1510 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial)
CJA_1511 PWY-40 putrescine biosynthesis I
CJA_1511 PWY-43 putrescine biosynthesis II
CJA_1511 PWY-6305 putrescine biosynthesis IV
CJA_1511 PWY-6834 spermidine biosynthesis III
CJA_1513 PWY-6562 norspermidine biosynthesis
CJA_1528 PWY-5162 2-oxopentenoate degradation
CJA_1528 PWY-5436 L-threonine degradation IV
CJA_1528 PWY-5480 pyruvate fermentation to ethanol I
CJA_1528 PWY-6587 pyruvate fermentation to ethanol III
CJA_1528 PWY-7085 triethylamine degradation
CJA_1528 PWY-7180 2'-deoxy-α-D-ribose 1-phosphate degradation
CJA_1546 PWY-3781 aerobic respiration I (cytochrome c)
CJA_1546 PWY-4521 arsenite oxidation I (respiratory)
CJA_1546 PWY-6692 Fe(II) oxidation
CJA_1546 PWY-7279 aerobic respiration II (cytochrome c) (yeast)
CJA_1554 PWY-6700 queuosine biosynthesis
CJA_1568 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III
CJA_1568 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I
CJA_1568 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV
CJA_1568 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP
CJA_1568 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II
CJA_1568 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II
CJA_1568 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I
CJA_1568 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis
CJA_1569 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III
CJA_1569 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I
CJA_1569 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV
CJA_1569 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP
CJA_1569 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II
CJA_1569 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II
CJA_1569 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I
CJA_1569 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis
CJA_1599 PWY-5340 sulfate activation for sulfonation
CJA_1602 PWY-2201 folate transformations I
CJA_1602 PWY-5497 purine nucleobases degradation II (anaerobic)
CJA_1605 PWY-5941 glycogen degradation II (eukaryotic)
CJA_1605 PWY-622 starch biosynthesis
CJA_1605 PWY-6731 starch degradation III
CJA_1605 PWY-6737 starch degradation V
CJA_1605 PWY-7238 sucrose biosynthesis II
CJA_1625 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II
CJA_1629 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I
CJA_1629 PWY-6613 tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CJA_1630 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I
CJA_1630 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II
CJA_1630 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJA_1633 PWY-6788 cellulose degradation II (fungi)
CJA_1644 PWY-4261 glycerol degradation I
CJA_1655 PWY-43 putrescine biosynthesis II
CJA_1675 PWY-4381 fatty acid biosynthesis initiation I
CJA_1675 PWY-6799 fatty acid biosynthesis (plant mitochondria)
CJA_1675 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJA_1676 PWY-5367 petroselinate biosynthesis
CJA_1676 PWY-5971 palmitate biosynthesis II (bacteria and plants)
CJA_1676 PWY-5973 cis-vaccenate biosynthesis
CJA_1676 PWY-5989 stearate biosynthesis II (bacteria and plants)
CJA_1676 PWY-5994 palmitate biosynthesis I (animals and fungi)
CJA_1676 PWY-6113 superpathway of mycolate biosynthesis
CJA_1676 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CJA_1676 PWY-6519 8-amino-7-oxononanoate biosynthesis I
CJA_1676 PWY-6951 CJA_1676
CJA_1676 PWY-7053 docosahexaenoate biosynthesis I (lower eukaryotes)
CJA_1676 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJA_1676 PWYG-321 mycolate biosynthesis
CJA_1679 PWY-6543 4-aminobenzoate biosynthesis
CJA_1679 PWY-6722 candicidin biosynthesis
CJA_1681 PWY-5188 tetrapyrrole biosynthesis I (from glutamate)
CJA_1693 PWY-5136 fatty acid β-oxidation II (peroxisome)
CJA_1693 PWY-6435 4-hydroxybenzoate biosynthesis V
CJA_1693 PWY-6863 pyruvate fermentation to hexanol
CJA_1693 PWY-6945 cholesterol degradation to androstenedione I (cholesterol oxidase)
CJA_1693 PWY-6946 cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CJA_1693 PWY-6948 sitosterol degradation to androstenedione
CJA_1693 PWY-7094 fatty acid salvage
CJA_1693 PWY-7288 fatty acid β-oxidation (peroxisome, yeast)
CJA_1693 PWY-7337 10-cis-heptadecenoyl-CoA degradation (yeast)
CJA_1693 PWY-7338 10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
CJA_1693 PWY-7339 10-trans-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
CJA_1693 PWY-7340 9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
CJA_1693 PWY-735 jasmonic acid biosynthesis
CJA_1716 PWY-7219 adenosine ribonucleotides de novo biosynthesis
CJA_1740 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I
CJA_1740 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CJA_1740 PWY-6164 3-dehydroquinate biosynthesis I
CJA_1746 PWY-7396 butanol and isobutanol biosynthesis (engineered)
CJA_1747 PWY-2941 L-lysine biosynthesis II
CJA_1747 PWY-2942 L-lysine biosynthesis III
CJA_1747 PWY-5097 L-lysine biosynthesis VI
CJA_1747 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline)
CJA_1747 PWY-6559 spermidine biosynthesis II
CJA_1747 PWY-6562 norspermidine biosynthesis
CJA_1747 PWY-7153 grixazone biosynthesis
CJA_1747 PWY-7400 L-arginine biosynthesis IV (archaebacteria)
CJA_1753 PWY-4381 fatty acid biosynthesis initiation I
CJA_1753 PWY-5743 3-hydroxypropanoate cycle
CJA_1753 PWY-5744 glyoxylate assimilation
CJA_1753 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle
CJA_1753 PWY-6679 jadomycin biosynthesis
CJA_1753 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJA_1754 PWY-2161 folate polyglutamylation
CJA_1757 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I
CJA_1757 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II
CJA_1757 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJA_1757 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CJA_1782 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I
CJA_1782 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CJA_1784 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJA_1784 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)
CJA_1787 PWY-5269 cardiolipin biosynthesis II
CJA_1787 PWY-5668 cardiolipin biosynthesis I
CJA_1818 PWY-5030 L-histidine degradation III
CJA_1818 PWY-5497 purine nucleobases degradation II (anaerobic)
CJA_1866 PWY-7533 gliotoxin biosynthesis
CJA_1875 PWY-6409 pyoverdine I biosynthesis
CJA_1875 PWY-6562 norspermidine biosynthesis
CJA_1875 PWY-761 rhizobactin 1021 biosynthesis
CJA_1882 PWY-5941 glycogen degradation II (eukaryotic)
CJA_1882 PWY-6724 starch degradation II
CJA_1882 PWY-6737 starch degradation V
CJA_1882 PWY-7238 sucrose biosynthesis II
CJA_1884 PWY-622 starch biosynthesis
CJA_1885 PWY-5067 glycogen biosynthesis II (from UDP-D-Glucose)
CJA_1885 PWY-622 starch biosynthesis
CJA_1886 PWY-622 starch biosynthesis
CJA_1887 PWY-2723 trehalose degradation V
CJA_1887 PWY-3801 sucrose degradation II (sucrose synthase)
CJA_1887 PWY-5384 sucrose degradation IV (sucrose phosphorylase)
CJA_1887 PWY-5661 GDP-glucose biosynthesis
CJA_1887 PWY-5661-1 CJA_1887
CJA_1887 PWY-5940 streptomycin biosynthesis
CJA_1887 PWY-5941 glycogen degradation II (eukaryotic)
CJA_1887 PWY-622 starch biosynthesis
CJA_1887 PWY-6731 starch degradation III
CJA_1887 PWY-6737 starch degradation V
CJA_1887 PWY-6749 CMP-legionaminate biosynthesis I
CJA_1887 PWY-7238 sucrose biosynthesis II
CJA_1887 PWY-7343 UDP-glucose biosynthesis
CJA_1896 PWY-6936 seleno-amino acid biosynthesis
CJA_1906 PWY-5188 tetrapyrrole biosynthesis I (from glutamate)
CJA_1906 PWY-5189 tetrapyrrole biosynthesis II (from glycine)
CJA_1940 PWY-5350 thiosulfate disproportionation III (rhodanese)
CJA_1946 PWY-5381 pyridine nucleotide cycling (plants)
CJA_1946 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation
CJA_1946 PWY-6596 adenosine nucleotides degradation I
CJA_1946 PWY-6606 guanosine nucleotides degradation II
CJA_1946 PWY-6607 guanosine nucleotides degradation I
CJA_1946 PWY-6608 guanosine nucleotides degradation III
CJA_1946 PWY-7185 UTP and CTP dephosphorylation I
CJA_1949 PWY-6163 chorismate biosynthesis from 3-dehydroquinate
CJA_1951 PWY-5663 tetrahydrobiopterin biosynthesis I
CJA_1951 PWY-5664 tetrahydrobiopterin biosynthesis II
CJA_1951 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJA_1951 PWY-6703 preQ0 biosynthesis
CJA_1951 PWY-6983 tetrahydrobiopterin biosynthesis III
CJA_1951 PWY-7442 drosopterin and aurodrosopterin biosynthesis
CJA_1957 PWY-5667 CDP-diacylglycerol biosynthesis I
CJA_1957 PWY-5981 CDP-diacylglycerol biosynthesis III
CJA_1964 PWY-1722 formate reduction to 5,10-methylenetetrahydrofolate
CJA_1964 PWY-2201 folate transformations I
CJA_1964 PWY-3841 folate transformations II
CJA_1964 PWY-5030 L-histidine degradation III
CJA_1964 PWY-5497 purine nucleobases degradation II (anaerobic)
CJA_1964 PWY-6613 tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CJA_1983 PWY-1622 formaldehyde assimilation I (serine pathway)
CJA_1983 PWY-5392 reductive TCA cycle II
CJA_1983 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation
CJA_1983 PWY-5690 TCA cycle II (plants and fungi)
CJA_1983 PWY-5913 TCA cycle VI (obligate autotrophs)
CJA_1983 PWY-6728 methylaspartate cycle
CJA_1983 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJA_1983 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type
CJA_1983 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol)
CJA_1993 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III
CJA_1993 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I
CJA_1993 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II
CJA_1993 PWY-7197 pyrimidine deoxyribonucleotide phosphorylation
CJA_1993 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV
CJA_1993 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP
CJA_2001 PWY-5747 2-methylcitrate cycle II
CJA_2038 PWY-5958 acridone alkaloid biosynthesis
CJA_2038 PWY-6543 4-aminobenzoate biosynthesis
CJA_2038 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis
CJA_2038 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis
CJA_2038 PWY-6722 candicidin biosynthesis
CJA_2046 PWY-5381 pyridine nucleotide cycling (plants)
CJA_2052 PWY-5386 methylglyoxal degradation I
CJA_2084 PWY-7219 adenosine ribonucleotides de novo biosynthesis
CJA_2103 PWY-7221 guanosine ribonucleotides de novo biosynthesis
CJA_2104 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation
CJA_2104 PWY-6596 adenosine nucleotides degradation I
CJA_2104 PWY-7221 guanosine ribonucleotides de novo biosynthesis
CJA_2108 PWY-6891 thiazole biosynthesis II (Bacillus)
CJA_2108 PWY-6892 thiazole biosynthesis I (E. coli)
CJA_2115 PWY-5659 GDP-mannose biosynthesis
CJA_2115 PWY-6073 alginate biosynthesis I (algal)
CJA_2115 PWY-6082 alginate biosynthesis II (bacterial)
CJA_2115 PWY-882 L-ascorbate biosynthesis I (L-galactose pathway)
CJA_2116 PWY-3801 sucrose degradation II (sucrose synthase)
CJA_2116 PWY-6527 stachyose degradation
CJA_2116 PWY-6981 chitin biosynthesis
CJA_2116 PWY-7238 sucrose biosynthesis II
CJA_2116 PWY-7343 UDP-glucose biosynthesis
CJA_2117 PWY-6749 CMP-legionaminate biosynthesis I
CJA_2118 PWY-7205 CMP phosphorylation
CJA_2119 PWY-5686 UMP biosynthesis
CJA_2121 PWY-5278 sulfite oxidation III
CJA_2121 PWY-5340 sulfate activation for sulfonation
CJA_2121 PWY-6683 sulfate reduction III (assimilatory)
CJA_2121 PWY-6932 selenate reduction
CJA_2122 PWY-5278 sulfite oxidation III
CJA_2122 PWY-5340 sulfate activation for sulfonation
CJA_2122 PWY-6683 sulfate reduction III (assimilatory)
CJA_2122 PWY-6932 selenate reduction
CJA_2123 PWY-7303 3-dimethylallyl-4-hydroxybenzoate biosynthesis
CJA_2124 PWY-3461 L-tyrosine biosynthesis II
CJA_2124 PWY-3462 L-phenylalanine biosynthesis II
CJA_2124 PWY-6120 L-tyrosine biosynthesis III
CJA_2124 PWY-6627 salinosporamide A biosynthesis
CJA_2124 PWY-7432 L-phenylalanine biosynthesis III (cytosolic, plants)
CJA_2128 PWY-5855 ubiquinol-7 biosynthesis (prokaryotic)
CJA_2128 PWY-5856 ubiquinol-9 biosynthesis (prokaryotic)
CJA_2128 PWY-5857 ubiquinol-10 biosynthesis (prokaryotic)
CJA_2128 PWY-5870 ubiquinol-8 biosynthesis (eukaryotic)
CJA_2128 PWY-5871 ubiquinol-9 biosynthesis (eukaryotic)
CJA_2128 PWY-5872 ubiquinol-10 biosynthesis (eukaryotic)
CJA_2128 PWY-5873 ubiquinol-7 biosynthesis (eukaryotic)
CJA_2128 PWY-6708 ubiquinol-8 biosynthesis (prokaryotic)
CJA_2128 PWY-7230 ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
CJA_2128 PWY-7233 ubiquinol-6 bypass biosynthesis (eukaryotic)
CJA_2158 PWY-5686 UMP biosynthesis
CJA_2161 PWY-5022 4-aminobutanoate degradation V
CJA_2161 PWY-6728 methylaspartate cycle
CJA_2161 PWY-7126 ethylene biosynthesis IV
CJA_2174 PWY-5083 NAD/NADH phosphorylation and dephosphorylation
CJA_2174 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CJA_2174 PWY-7269 NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CJA_2190 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJA_2190 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)
CJA_2204 PWY-3821 galactose degradation III
CJA_2204 PWY-6317 galactose degradation I (Leloir pathway)
CJA_2204 PWY-6527 stachyose degradation
CJA_2205 PWY-6317 galactose degradation I (Leloir pathway)
CJA_2205 PWY-6527 stachyose degradation
CJA_2206 PWY-7039 phosphatidate metabolism, as a signaling molecule
CJA_2214 PWY-5316 nicotine biosynthesis
CJA_2214 PWY-7342 superpathway of nicotine biosynthesis
CJA_2222 PWY-7560 methylerythritol phosphate pathway II
CJA_2223 PWY-7560 methylerythritol phosphate pathway II
CJA_2225 PWY-1042 glycolysis IV (plant cytosol)
CJA_2225 PWY-1622 formaldehyde assimilation I (serine pathway)
CJA_2225 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative)
CJA_2225 PWY-5484 glycolysis II (from fructose 6-phosphate)
CJA_2225 PWY-5723 Rubisco shunt
CJA_2225 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum)
CJA_2225 PWY-6886 1-butanol autotrophic biosynthesis
CJA_2225 PWY-6901 superpathway of glucose and xylose degradation
CJA_2225 PWY-7003 glycerol degradation to butanol
CJA_2225 PWY-7124 ethylene biosynthesis V (engineered)
CJA_2225 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CJA_2226 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I
CJA_2226 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CJA_2227 PWY-7176 UTP and CTP de novo biosynthesis
CJA_2227 PWY-7177 UTP and CTP dephosphorylation II
CJA_2227 PWY-7185 UTP and CTP dephosphorylation I
CJA_2234 PWY-6823 molybdenum cofactor biosynthesis
CJA_2234 PWY-6891 thiazole biosynthesis II (Bacillus)
CJA_2234 PWY-6892 thiazole biosynthesis I (E. coli)
CJA_2234 PWY-7250 [2Fe-2S] iron-sulfur cluster biosynthesis
CJA_2237 PWY-6936 seleno-amino acid biosynthesis
CJA_2237 PWY-7274 D-cycloserine biosynthesis
CJA_2278 PWY-7158 L-phenylalanine degradation V
CJA_2283 PWY-4202 arsenate detoxification I (glutaredoxin)
CJA_2283 PWY-4621 arsenate detoxification II (glutaredoxin)
CJA_2284 PWY-6785 hydrogen production VIII
CJA_2300 PWY-5392 reductive TCA cycle II
CJA_2300 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation
CJA_2300 PWY-5690 TCA cycle II (plants and fungi)
CJA_2300 PWY-5913 TCA cycle VI (obligate autotrophs)
CJA_2300 PWY-6728 methylaspartate cycle
CJA_2300 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJA_2300 PWY-7254 TCA cycle VII (acetate-producers)
CJA_2300 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial)
CJA_2345 PWY-5350 thiosulfate disproportionation III (rhodanese)
CJA_2375 PWY-5083 NAD/NADH phosphorylation and dephosphorylation
CJA_2375 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CJA_2375 PWY-7269 NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CJA_2419 PWY-5686 UMP biosynthesis
CJA_2421 PWY-4261 glycerol degradation I
CJA_2421 PWY-6118 glycerol-3-phosphate shuttle
CJA_2421 PWY-6952 glycerophosphodiester degradation
CJA_2424 PWY-5530 sorbitol biosynthesis II
CJA_2448 PWY-5041 S-adenosyl-L-methionine cycle II
CJA_2448 PWY-6151 S-adenosyl-L-methionine cycle I
CJA_2448 PWY-6936 seleno-amino acid biosynthesis
CJA_2448 PWY-702 L-methionine biosynthesis II
CJA_2471 PWY-6784 cellulose and hemicellulose degradation (cellulolosome)
CJA_2472 PWY-6788 cellulose degradation II (fungi)
CJA_2480 PWY-7456 mannan degradation
CJA_2492 PWY-6123 inosine-5'-phosphate biosynthesis I
CJA_2492 PWY-6124 inosine-5'-phosphate biosynthesis II
CJA_2492 PWY-7219 adenosine ribonucleotides de novo biosynthesis
CJA_2492 PWY-7234 inosine-5'-phosphate biosynthesis III
CJA_2542 PWY-2201 folate transformations I
CJA_2542 PWY-3841 folate transformations II
CJA_2549 PWY-6163 chorismate biosynthesis from 3-dehydroquinate
CJA_2551 PWY-5194 siroheme biosynthesis
CJA_2551 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion)
CJA_2552 PWY-6281 L-selenocysteine biosynthesis II (archaea and eukaryotes)
CJA_2571 PWY-5913 TCA cycle VI (obligate autotrophs)
CJA_2571 PWY-6549 L-glutamine biosynthesis III
CJA_2571 PWY-6728 methylaspartate cycle
CJA_2571 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJA_2571 PWY-7124 ethylene biosynthesis V (engineered)
CJA_2571 PWY-7254 TCA cycle VII (acetate-producers)
CJA_2571 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CJA_2577 PWY-6936 seleno-amino acid biosynthesis
CJA_2589 PWY-5686 UMP biosynthesis
CJA_2596 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I
CJA_2596 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II
CJA_2596 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJA_2599 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJA_2599 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)
CJA_2610 PWY-6807 xyloglucan degradation II (exoglucanase)
CJA_2611 PWY-6902 chitin degradation II
CJA_2624 PWY-5386 methylglyoxal degradation I
CJA_2633 PWY-3781 aerobic respiration I (cytochrome c)
CJA_2633 PWY-4521 arsenite oxidation I (respiratory)
CJA_2633 PWY-6692 Fe(II) oxidation
CJA_2633 PWY-7279 aerobic respiration II (cytochrome c) (yeast)
CJA_2634 PWY-3781 aerobic respiration I (cytochrome c)
CJA_2634 PWY-4521 arsenite oxidation I (respiratory)
CJA_2634 PWY-6692 Fe(II) oxidation
CJA_2634 PWY-7279 aerobic respiration II (cytochrome c) (yeast)
CJA_2635 PWY-4983 L-citrulline-nitric oxide cycle
CJA_2635 PWY-4984 urea cycle
CJA_2635 PWY-5 canavanine biosynthesis
CJA_2635 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline)
CJA_2635 PWY-7400 L-arginine biosynthesis IV (archaebacteria)
CJA_2638 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type
CJA_2638 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum)
CJA_2638 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type
CJA_2638 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type
CJA_2642 PWY-5392 reductive TCA cycle II
CJA_2642 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation
CJA_2642 PWY-5690 TCA cycle II (plants and fungi)
CJA_2642 PWY-5913 TCA cycle VI (obligate autotrophs)
CJA_2642 PWY-6728 methylaspartate cycle
CJA_2642 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJA_2642 PWY-7254 TCA cycle VII (acetate-producers)
CJA_2642 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial)
CJA_2645 PWY-6854 ethylene biosynthesis III (microbes)
CJA_2662 PWY-5958 acridone alkaloid biosynthesis
CJA_2662 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis
CJA_2662 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis
CJA_2663 PWY-5958 acridone alkaloid biosynthesis
CJA_2663 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis
CJA_2663 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis
CJA_2666 PWY-1861 formaldehyde assimilation II (RuMP Cycle)
CJA_2666 PWY-5723 Rubisco shunt
CJA_2671 PWY-1042 glycolysis IV (plant cytosol)
CJA_2671 PWY-5484 glycolysis II (from fructose 6-phosphate)
CJA_2671 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum)
CJA_2671 PWY-7003 glycerol degradation to butanol
CJA_2672 PWY-6749 CMP-legionaminate biosynthesis I
CJA_2673 PWY-6614 tetrahydrofolate biosynthesis
CJA_2682 PWY-5874 heme degradation
CJA_2682 PWY-5915 phycoerythrobilin biosynthesis I
CJA_2682 PWY-5917 phycocyanobilin biosynthesis
CJA_2682 PWY-7170 phytochromobilin biosynthesis
CJA_2686 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline)
CJA_2686 PWY-5686 UMP biosynthesis
CJA_2686 PWY-7400 L-arginine biosynthesis IV (archaebacteria)
CJA_2687 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline)
CJA_2687 PWY-5686 UMP biosynthesis
CJA_2687 PWY-7400 L-arginine biosynthesis IV (archaebacteria)
CJA_2688 PWY-2941 L-lysine biosynthesis II
CJA_2688 PWY-2942 L-lysine biosynthesis III
CJA_2688 PWY-5097 L-lysine biosynthesis VI
CJA_2689 PWY-6168 flavin biosynthesis III (fungi)
CJA_2689 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CJA_2691 PWY-5269 cardiolipin biosynthesis II
CJA_2691 PWY-5668 cardiolipin biosynthesis I
CJA_2692 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus)
CJA_2692 PWY-6894 thiamin diphosphate biosynthesis I (E. coli)
CJA_2692 PWY-6896 thiamin salvage I
CJA_2692 PWY-6897 thiamin salvage II
CJA_2694 PWY-6167 flavin biosynthesis II (archaea)
CJA_2694 PWY-6168 flavin biosynthesis III (fungi)
CJA_2695 PWY-6167 flavin biosynthesis II (archaea)
CJA_2695 PWY-6168 flavin biosynthesis III (fungi)
CJA_2695 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CJA_2696 PWY-6167 flavin biosynthesis II (archaea)
CJA_2696 PWY-6168 flavin biosynthesis III (fungi)
CJA_2696 PWY-7219 adenosine ribonucleotides de novo biosynthesis
CJA_2703 PWY-1622 formaldehyde assimilation I (serine pathway)
CJA_2703 PWY-181 photorespiration
CJA_2703 PWY-2161 folate polyglutamylation
CJA_2703 PWY-2201 folate transformations I
CJA_2703 PWY-3661 glycine betaine degradation I
CJA_2703 PWY-3661-1 glycine betaine degradation II (mammalian)
CJA_2703 PWY-3841 folate transformations II
CJA_2703 PWY-5497 purine nucleobases degradation II (anaerobic)
CJA_2707 PWY-6807 xyloglucan degradation II (exoglucanase)
CJA_2715 PWY-6803 phosphatidylcholine acyl editing
CJA_2715 PWY-7409 phospholipid remodeling (phosphatidylethanolamine, yeast)
CJA_2715 PWY-7416 phospholipid remodeling (phosphatidylcholine, yeast)
CJA_2715 PWY-7417 phospholipid remodeling (phosphatidate, yeast)
CJA_2723 PWY-5169 cyanurate degradation
CJA_2723 PWY-5703 urea degradation I
CJA_2725 PWY-5316 nicotine biosynthesis
CJA_2725 PWY-5381 pyridine nucleotide cycling (plants)
CJA_2725 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CJA_2725 PWY-7342 superpathway of nicotine biosynthesis
CJA_2739 PWY-6163 chorismate biosynthesis from 3-dehydroquinate
CJA_2739 PWY-6416 quinate degradation II
CJA_2739 PWY-6707 gallate biosynthesis
CJA_2747 PWY-6123 inosine-5'-phosphate biosynthesis I
CJA_2747 PWY-6124 inosine-5'-phosphate biosynthesis II
CJA_2747 PWY-7234 inosine-5'-phosphate biosynthesis III
CJA_2748 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I
CJA_2748 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II
CJA_2748 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJA_2756 PWY-6339 syringate degradation
CJA_2758 PWY-6339 syringate degradation
CJA_2768 PWY-6936 seleno-amino acid biosynthesis
CJA_2770 PWY-7456 mannan degradation
CJA_2772 PWY-7247 β-D-glucuronide and D-glucuronate degradation
CJA_2772 PWY-7248 pectin degradation III
CJA_2785 PWY-3781 aerobic respiration I (cytochrome c)
CJA_2785 PWY-6692 Fe(II) oxidation
CJA_2785 PWY-7082 ammonia oxidation IV (autotrophic ammonia oxidizers)
CJA_2785 PWY-7279 aerobic respiration II (cytochrome c) (yeast)
CJA_2796 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJA_2796 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)
CJA_2801 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I
CJA_2801 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CJA_2819 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation
CJA_2827 PWY-6123 inosine-5'-phosphate biosynthesis I
CJA_2827 PWY-6124 inosine-5'-phosphate biosynthesis II
CJA_2827 PWY-7234 inosine-5'-phosphate biosynthesis III
CJA_2830 PWY-2941 L-lysine biosynthesis II
CJA_2830 PWY-2942 L-lysine biosynthesis III
CJA_2830 PWY-5097 L-lysine biosynthesis VI
CJA_2831 PWY-5316 nicotine biosynthesis
CJA_2831 PWY-7342 superpathway of nicotine biosynthesis
CJA_2835 PWY-6703 preQ0 biosynthesis
CJA_2836 PWY-6703 preQ0 biosynthesis
CJA_2878 PWY-4981 L-proline biosynthesis II (from arginine)
CJA_2878 PWY-4984 urea cycle
CJA_2878 PWY-7400 L-arginine biosynthesis IV (archaebacteria)
CJA_2888 PWY-6784 cellulose and hemicellulose degradation (cellulolosome)
CJA_2895 PWY-5913 TCA cycle VI (obligate autotrophs)
CJA_2895 PWY-6318 L-phenylalanine degradation IV (mammalian, via side chain)
CJA_2895 PWY-6638 sulfolactate degradation III
CJA_2895 PWY-6642 (R)-cysteate degradation
CJA_2895 PWY-6643 coenzyme M biosynthesis II
CJA_2895 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type
CJA_2895 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type
CJA_2895 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol)
CJA_2896 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II
CJA_2896 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I
CJA_2896 PWY-6269 adenosylcobalamin salvage from cobinamide II
CJA_2897 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II
CJA_2897 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I
CJA_2897 PWY-6269 adenosylcobalamin salvage from cobinamide II
CJA_2909 PWY-6890 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
CJA_2910 PWY-6910 hydroxymethylpyrimidine salvage
CJA_2910 PWY-7356 thiamin salvage IV (yeast)
CJA_2910 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast)
CJA_2917 PWY-6502 oxidized GTP and dGTP detoxification
CJA_2917 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus)
CJA_2917 PWY-6894 thiamin diphosphate biosynthesis I (E. coli)
CJA_2917 PWY-6897 thiamin salvage II
CJA_2917 PWY-6907 thiamin diphosphate biosynthesis III (Staphylococcus)
CJA_2917 PWY-6908 thiamin diphosphate biosynthesis IV (eukaryotes)
CJA_2917 PWY-7353 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast)
CJA_2917 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast)
CJA_2918 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline)
CJA_2927 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJA_2927 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)
CJA_2928 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJA_2928 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)
CJA_2929 PWY-5265 peptidoglycan biosynthesis II (staphylococci)
CJA_2929 PWY-6385 peptidoglycan biosynthesis III (mycobacteria)
CJA_2929 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance)
CJA_2929 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium)
CJA_2931 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJA_2931 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)
CJA_2932 PWY-5265 peptidoglycan biosynthesis II (staphylococci)
CJA_2932 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance)
CJA_2932 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium)
CJA_2933 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJA_2933 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)
CJA_2950 PWY-1622 formaldehyde assimilation I (serine pathway)
CJA_2950 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type
CJA_2950 PWY-5913 TCA cycle VI (obligate autotrophs)
CJA_2950 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum)
CJA_2950 PWY-6146 Methanobacterium thermoautotrophicum biosynthetic metabolism
CJA_2950 PWY-6549 L-glutamine biosynthesis III
CJA_2950 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type
CJA_2950 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type
CJA_2950 PWY-7124 ethylene biosynthesis V (engineered)
CJA_2967 PWY-5074 mevalonate degradation
CJA_2972 PWY-6672 cis-genanyl-CoA degradation
CJA_2972 PWY-7118 chitin degradation to ethanol
CJA_2974 PWY-5155 β-alanine biosynthesis III
CJA_2993 PWY-6902 chitin degradation II
CJA_2998 PWY-4381 fatty acid biosynthesis initiation I
CJA_2998 PWY-6799 fatty acid biosynthesis (plant mitochondria)
CJA_2998 PWY-723 alkylnitronates degradation
CJA_2998 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJA_3025 PWY-1801 formaldehyde oxidation II (glutathione-dependent)
CJA_3062 PWY-4261 glycerol degradation I
CJA_3066 PWY-6784 cellulose and hemicellulose degradation (cellulolosome)
CJA_3073 PWY-7219 adenosine ribonucleotides de novo biosynthesis
CJA_3080 PWY-2781 cis-zeatin biosynthesis
CJA_3087 PWY-6938 NADH repair
CJA_3100 PWY-7165 L-ascorbate biosynthesis VI (engineered pathway)
CJA_3126 PWY-842 starch degradation I
CJA_3140 PWY-5669 phosphatidylethanolamine biosynthesis I
CJA_3144 PWY-5531 chlorophyllide a biosynthesis II (anaerobic)
CJA_3144 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent)
CJA_3170 PWY-5686 UMP biosynthesis
CJA_3176 PWY-5674 nitrate reduction IV (dissimilatory)
CJA_3197 PWY-5265 peptidoglycan biosynthesis II (staphylococci)
CJA_3197 PWY-6385 peptidoglycan biosynthesis III (mycobacteria)
CJA_3197 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance)
CJA_3197 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium)
CJA_3207 PWY-5381 pyridine nucleotide cycling (plants)
CJA_3207 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CJA_3214 PWY-7560 methylerythritol phosphate pathway II
CJA_3218 PWY-5523 5,6-dimethylbenzimidazole biosynthesis
CJA_3218 PWY-6167 flavin biosynthesis II (archaea)
CJA_3218 PWY-6168 flavin biosynthesis III (fungi)
CJA_3237 PWY-6409 pyoverdine I biosynthesis
CJA_3237 PWY-6562 norspermidine biosynthesis
CJA_3237 PWY-761 rhizobactin 1021 biosynthesis
CJA_3247 PWY-6784 cellulose and hemicellulose degradation (cellulolosome)
CJA_3250 PWY-6164 3-dehydroquinate biosynthesis I
CJA_3263 PWY-6784 cellulose and hemicellulose degradation (cellulolosome)
CJA_3280 PWY-6784 cellulose and hemicellulose degradation (cellulolosome)
CJA_3290 PWY-2941 L-lysine biosynthesis II
CJA_3290 PWY-5097 L-lysine biosynthesis VI
CJA_3291 PWY-2941 L-lysine biosynthesis II
CJA_3291 PWY-2942 L-lysine biosynthesis III
CJA_3291 PWY-5097 L-lysine biosynthesis VI
CJA_3336 PWY-6891 thiazole biosynthesis II (Bacillus)
CJA_3336 PWY-6892 thiazole biosynthesis I (E. coli)
CJA_3336 PWY-7560 methylerythritol phosphate pathway II
CJA_3339 PWY-1801 formaldehyde oxidation II (glutathione-dependent)
CJA_3340 PWY-1801 formaldehyde oxidation II (glutathione-dependent)
CJA_3340 PWY-3162 L-tryptophan degradation V (side chain pathway)
CJA_3340 PWY-5057 L-valine degradation II
CJA_3340 PWY-5076 L-leucine degradation III
CJA_3340 PWY-5078 L-isoleucine degradation II
CJA_3340 PWY-5079 L-phenylalanine degradation III
CJA_3340 PWY-5082 L-methionine degradation III
CJA_3340 PWY-5480 pyruvate fermentation to ethanol I
CJA_3340 PWY-5486 pyruvate fermentation to ethanol II
CJA_3340 PWY-5751 phenylethanol biosynthesis
CJA_3340 PWY-6028 acetoin degradation
CJA_3340 PWY-6313 serotonin degradation
CJA_3340 PWY-6333 acetaldehyde biosynthesis I
CJA_3340 PWY-6342 noradrenaline and adrenaline degradation
CJA_3340 PWY-6587 pyruvate fermentation to ethanol III
CJA_3340 PWY-6802 salidroside biosynthesis
CJA_3340 PWY-6871 3-methylbutanol biosynthesis
CJA_3340 PWY-7013 L-1,2-propanediol degradation
CJA_3340 PWY-7111 pyruvate fermentation to isobutanol (engineered)
CJA_3340 PWY-7118 chitin degradation to ethanol
CJA_3340 PWY-7396 butanol and isobutanol biosynthesis (engineered)
CJA_3340 PWY-7557 dehydrodiconiferyl alcohol degradation
CJA_3385 PWY-5188 tetrapyrrole biosynthesis I (from glutamate)
CJA_3385 PWY-5189 tetrapyrrole biosynthesis II (from glycine)
CJA_3386 PWY-5188 tetrapyrrole biosynthesis I (from glutamate)
CJA_3386 PWY-5189 tetrapyrrole biosynthesis II (from glycine)
CJA_3434 PWY-7346 UDP-α-D-glucuronate biosynthesis (from UDP-glucose)
CJA_3435 PWY-3221 dTDP-L-rhamnose biosynthesis II
CJA_3435 PWY-6808 dTDP-D-forosamine biosynthesis
CJA_3435 PWY-6942 dTDP-D-desosamine biosynthesis
CJA_3435 PWY-6953 dTDP-3-acetamido-3,6-dideoxy-α-D-galactose biosynthesis
CJA_3435 PWY-6973 dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CJA_3435 PWY-6974 dTDP-L-olivose biosynthesis
CJA_3435 PWY-6976 dTDP-L-mycarose biosynthesis
CJA_3435 PWY-7104 dTDP-L-megosamine biosynthesis
CJA_3435 PWY-7301 dTDP-β-L-noviose biosynthesis
CJA_3435 PWY-7312 dTDP-D-β-fucofuranose biosynthesis
CJA_3435 PWY-7315 dTDP-N-acetylthomosamine biosynthesis
CJA_3435 PWY-7316 dTDP-N-acetylviosamine biosynthesis
CJA_3435 PWY-7318 dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis
CJA_3435 PWY-7413 dTDP-6-deoxy-α-D-allose biosynthesis
CJA_3435 PWY-7414 dTDP-α-D-mycaminose biosynthesis
CJA_3435 PWY-7440 dTDP-β-L-4-epi-vancosamine biosynthesis
CJA_3436 PWY-3221 dTDP-L-rhamnose biosynthesis II
CJA_3436 PWY-6808 dTDP-D-forosamine biosynthesis
CJA_3436 PWY-6942 dTDP-D-desosamine biosynthesis
CJA_3436 PWY-6953 dTDP-3-acetamido-3,6-dideoxy-α-D-galactose biosynthesis
CJA_3436 PWY-6973 dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CJA_3436 PWY-6974 dTDP-L-olivose biosynthesis
CJA_3436 PWY-6976 dTDP-L-mycarose biosynthesis
CJA_3436 PWY-7104 dTDP-L-megosamine biosynthesis
CJA_3436 PWY-7301 dTDP-β-L-noviose biosynthesis
CJA_3436 PWY-7312 dTDP-D-β-fucofuranose biosynthesis
CJA_3436 PWY-7315 dTDP-N-acetylthomosamine biosynthesis
CJA_3436 PWY-7316 dTDP-N-acetylviosamine biosynthesis
CJA_3436 PWY-7318 dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis
CJA_3436 PWY-7413 dTDP-6-deoxy-α-D-allose biosynthesis
CJA_3436 PWY-7414 dTDP-α-D-mycaminose biosynthesis
CJA_3436 PWY-7440 dTDP-β-L-4-epi-vancosamine biosynthesis
CJA_3457 PWY-5265 peptidoglycan biosynthesis II (staphylococci)
CJA_3457 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance)
CJA_3457 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium)
CJA_3524 PWY-6749 CMP-legionaminate biosynthesis I
CJA_3525 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline)
CJA_3525 PWY-7400 L-arginine biosynthesis IV (archaebacteria)
CJA_3528 PWY-5686 UMP biosynthesis
CJA_3534 PWY-381 nitrate reduction II (assimilatory)
CJA_3534 PWY-5675 nitrate reduction V (assimilatory)
CJA_3534 PWY-6549 L-glutamine biosynthesis III
CJA_3534 PWY-6963 ammonia assimilation cycle I
CJA_3534 PWY-6964 ammonia assimilation cycle II
CJA_3553 PWY-1042 glycolysis IV (plant cytosol)
CJA_3553 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative)
CJA_3553 PWY-5484 glycolysis II (from fructose 6-phosphate)
CJA_3553 PWY-5723 Rubisco shunt
CJA_3553 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum)
CJA_3553 PWY-6886 1-butanol autotrophic biosynthesis
CJA_3553 PWY-6901 superpathway of glucose and xylose degradation
CJA_3553 PWY-7003 glycerol degradation to butanol
CJA_3553 PWY-7124 ethylene biosynthesis V (engineered)
CJA_3553 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CJA_3569 PWY-7221 guanosine ribonucleotides de novo biosynthesis
CJA_3573 PWY-5046 2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CJA_3573 PWY-5084 2-oxoglutarate decarboxylation to succinyl-CoA
CJA_3587 PWY-5531 chlorophyllide a biosynthesis II (anaerobic)
CJA_3587 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent)
CJA_3588 PWY-6163 chorismate biosynthesis from 3-dehydroquinate
CJA_3642 PWY-6803 phosphatidylcholine acyl editing
CJA_3642 PWY-7409 phospholipid remodeling (phosphatidylethanolamine, yeast)
CJA_3642 PWY-7416 phospholipid remodeling (phosphatidylcholine, yeast)
CJA_3642 PWY-7417 phospholipid remodeling (phosphatidate, yeast)
CJA_3643 PWY-5839 menaquinol-7 biosynthesis
CJA_3643 PWY-5844 menaquinol-9 biosynthesis
CJA_3643 PWY-5849 menaquinol-6 biosynthesis
CJA_3643 PWY-5890 menaquinol-10 biosynthesis
CJA_3643 PWY-5891 menaquinol-11 biosynthesis
CJA_3643 PWY-5892 menaquinol-12 biosynthesis
CJA_3643 PWY-5895 menaquinol-13 biosynthesis
CJA_3760 PWY-7153 grixazone biosynthesis
CJA_3762 PWY-6784 cellulose and hemicellulose degradation (cellulolosome)
CJA_3763 PWY-6784 cellulose and hemicellulose degradation (cellulolosome)
CJA_3770 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II
CJA_3770 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I
CJA_3770 PWY-6269 adenosylcobalamin salvage from cobinamide II
CJA_3774 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II
CJA_3774 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I
CJA_3774 PWY-6268 adenosylcobalamin salvage from cobalamin
CJA_3774 PWY-6269 adenosylcobalamin salvage from cobinamide II
CJA_3802 PWY-6749 CMP-legionaminate biosynthesis I
CJA_3804 PWY-6788 cellulose degradation II (fungi)
CJA_3806 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II
CJA_3809 PWY-7219 adenosine ribonucleotides de novo biosynthesis
CJA_3811 PWY-7219 adenosine ribonucleotides de novo biosynthesis