CJA_0001	SSF48295	TrpR-like
CJA_0001	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0002	SSF55979	DNA clamp
CJA_0003	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0004	SSF54211	Ribosomal protein S5 domain 2-like
CJA_0004	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_0004	SSF56719	Type II DNA topoisomerase
CJA_0006	SSF51445	(Trans)glycosidases
CJA_0007	SSF49299	PKD domain
CJA_0007	SSF49384	Carbohydrate-binding domain
CJA_0008	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0008	SSF55785	PYP-like sensor domain (PAS domain)
CJA_0009	SSF53850	Periplasmic binding protein-like II
CJA_0010	SSF161098	MetI-like
CJA_0011	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0012	SSF47413	lambda repressor-like DNA-binding domains
CJA_0012	SSF55234	Cyanase C-terminal domain
CJA_0013	SSF54427	NTF2-like
CJA_0014	SSF52821	Rhodanese/Cell cycle control phosphatase
CJA_0015	SSF54001	Cysteine proteinases
CJA_0016	SSF49265	Fibronectin type III
CJA_0016	SSF49464	Carboxypeptidase regulatory domain-like
CJA_0020	SSF49265	Fibronectin type III
CJA_0020	SSF49313	Cadherin-like
CJA_0020	SSF49785	Galactose-binding domain-like
CJA_0020	SSF49899	Concanavalin A-like lectins/glucanases
CJA_0023	SSF46785	"Winged helix" DNA-binding domain
CJA_0023	SSF54909	Dimeric alpha+beta barrel
CJA_0024	SSF110921	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
CJA_0024	SSF51569	Aldolase
CJA_0024	SSF89000	post-HMGL domain-like
CJA_0025	SSF48113	Heme-dependent peroxidases
CJA_0029	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0032	SSF111369	HlyD-like secretion proteins
CJA_0037	SSF46894	C-terminal effector domain of the bipartite response regulators
CJA_0037	SSF52172	CheY-like
CJA_0038	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_0038	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_0039	SSF56935	Porins
CJA_0040	SSF49265	Fibronectin type III
CJA_0041	SSF51126	Pectin lyase-like
CJA_0042	SSF51126	Pectin lyase-like
CJA_0043	SSF49265	Fibronectin type III
CJA_0044	SSF51126	Pectin lyase-like
CJA_0045	SSF51126	Pectin lyase-like
CJA_0052	SSF56784	HAD-like
CJA_0052	SSF81653	Calcium ATPase, transduction domain A
CJA_0052	SSF81665	Calcium ATPase, transmembrane domain M
CJA_0053	SSF51126	Pectin lyase-like
CJA_0054	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
CJA_0055	SSF56784	HAD-like
CJA_0056	SSF109604	HD-domain/PDEase-like
CJA_0057	SSF55681	Class II aaRS and biotin synthetases
CJA_0058	SSF54631	CBS-domain pair
CJA_0061	SSF50630	Acid proteases
CJA_0063	SSF56059	Glutathione synthetase ATP-binding domain-like
CJA_0064	SSF56925	OMPA-like
CJA_0066	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_0067	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_0068	SSF48208	Six-hairpin glycosidases
CJA_0069	SSF54534	FKBP-like
CJA_0070	SSF75217	alpha/beta knot
CJA_0070	SSF88697	PUA domain-like
CJA_0072	SSF50341	CheW-like
CJA_0073	SSF52738	Methylesterase CheB, C-terminal domain
CJA_0074	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
CJA_0074	SSF50341	CheW-like
CJA_0074	SSF52172	CheY-like
CJA_0074	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_0075	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
CJA_0075	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_0076	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
CJA_0077	SSF50341	CheW-like
CJA_0078	SSF52172	CheY-like
CJA_0080	SSF52172	CheY-like
CJA_0081	SSF52440	PreATP-grasp domain
CJA_0081	SSF56059	Glutathione synthetase ATP-binding domain-like
CJA_0082	SSF74653	TolA/TonB C-terminal domain
CJA_0083	SSF143456	VC0467-like
CJA_0084	SSF53098	Ribonuclease H-like
CJA_0085	SSF160113	YegP-like
CJA_0086	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0087	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0088	SSF51419	PLP-binding barrel
CJA_0089	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
CJA_0089	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_0091	SSF69786	YggU-like
CJA_0092	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0093	SSF158997	Trm112p-like
CJA_0094	SSF117782	YbjQ-like
CJA_0095	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
CJA_0096	SSF53901	Thiolase-like
CJA_0097	SSF53901	Thiolase-like
CJA_0099	SSF56801	Acetyl-CoA synthetase-like
CJA_0101	SSF47336	ACP-like
CJA_0102	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_0104	SSF55298	YjgF-like
CJA_0105	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
CJA_0107	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_0108	SSF47336	ACP-like
CJA_0109	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
CJA_0110	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_0111	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
CJA_0112	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
CJA_0113	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
CJA_0115	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
CJA_0116	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_0117	SSF53901	Thiolase-like
CJA_0118	SSF48371	ARM repeat
CJA_0119	SSF53474	alpha/beta-Hydrolases
CJA_0120	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_0122	SSF52972	ITPase-like
CJA_0123	SSF102114	Radical SAM enzymes
CJA_0125	SSF47819	HRDC-like
CJA_0125	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0127	SSF49265	Fibronectin type III
CJA_0127	SSF49313	Cadherin-like
CJA_0127	SSF69318	Integrin alpha N-terminal domain
CJA_0128	SSF53098	Ribonuclease H-like
CJA_0136	SSF53474	alpha/beta-Hydrolases
CJA_0136	SSF82171	DPP6 N-terminal domain-like
CJA_0139	SSF52172	CheY-like
CJA_0140	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_0140	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_0141	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0141	SSF90123	ABC transporter transmembrane region
CJA_0142	SSF56281	Metallo-hydrolase/oxidoreductase
CJA_0143	SSF103473	MFS general substrate transporter
CJA_0144	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0149	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_0149	SSF55785	PYP-like sensor domain (PAS domain)
CJA_0149	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_0150	SSF52172	CheY-like
CJA_0152	SSF64288	Chorismate lyase-like
CJA_0153	SSF47729	IHF-like DNA-binding proteins
CJA_0154	SSF118215	Proton glutamate symport protein
CJA_0156	SSF54211	Ribosomal protein S5 domain 2-like
CJA_0157	SSF52317	Class I glutamine amidotransferase-like
CJA_0158	SSF51366	Ribulose-phoshate binding barrel
CJA_0159	SSF51366	Ribulose-phoshate binding barrel
CJA_0161	SSF54534	FKBP-like
CJA_0163	SSF158442	DsbB-like
CJA_0164	SSF55931	Glutamine synthetase/guanido kinase
CJA_0167	SSF50182	Sm-like ribonucleoproteins
CJA_0168	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_0169	SSF51182	RmlC-like cupins
CJA_0170	SSF48208	Six-hairpin glycosidases
CJA_0171	SSF56935	Porins
CJA_0172	SSF51126	Pectin lyase-like
CJA_0175	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_0175	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
CJA_0177	SSF52467	DHS-like NAD/FAD-binding domain
CJA_0178	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
CJA_0179	SSF53613	Ribokinase-like
CJA_0180	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
CJA_0180	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_0181	SSF51126	Pectin lyase-like
CJA_0182	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
CJA_0183	SSF56655	Carbohydrate phosphatase
CJA_0184	SSF51569	Aldolase
CJA_0185	SSF51351	Triosephosphate isomerase (TIM)
CJA_0187	SSF158472	HAMP domain-like
CJA_0187	SSF55073	Nucleotide cyclase
CJA_0187	SSF55785	PYP-like sensor domain (PAS domain)
CJA_0188	SSF53850	Periplasmic binding protein-like II
CJA_0189	SSF56935	Porins
CJA_0190	SSF52172	CheY-like
CJA_0194	SSF48452	TPR-like
CJA_0197	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
CJA_0198	SSF81342	Transmembrane di-heme cytochromes
CJA_0199	SSF101874	YceI-like
CJA_0200	SSF47413	lambda repressor-like DNA-binding domains
CJA_0203	SSF54211	Ribosomal protein S5 domain 2-like
CJA_0203	SSF55666	Ribonuclease PH domain 2-like
CJA_0204	SSF51445	(Trans)glycosidases
CJA_0204	SSF52279	Beta-D-glucan exohydrolase, C-terminal domain
CJA_0205	SSF51730	FAD-linked oxidoreductase
CJA_0206	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_0206	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
CJA_0207	SSF55973	S-adenosylmethionine synthetase
CJA_0208	SSF46785	"Winged helix" DNA-binding domain
CJA_0208	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_0210	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
CJA_0210	SSF52922	TK C-terminal domain-like
CJA_0211	SSF53748	Phosphoglycerate kinase
CJA_0212	SSF51126	Pectin lyase-like
CJA_0214	SSF49695	gamma-Crystallin-like
CJA_0214	SSF49785	Galactose-binding domain-like
CJA_0215	SSF56935	Porins
CJA_0217	SSF51197	Clavaminate synthase-like
CJA_0218	SSF51905	FAD/NAD(P)-binding domain
CJA_0223	SSF51445	(Trans)glycosidases
CJA_0223	SSF52279	Beta-D-glucan exohydrolase, C-terminal domain
CJA_0224	SSF49899	Concanavalin A-like lectins/glucanases
CJA_0225	SSF49785	Galactose-binding domain-like
CJA_0225	SSF49899	Concanavalin A-like lectins/glucanases
CJA_0226	SSF51905	FAD/NAD(P)-binding domain
CJA_0229	SSF46689	Homeodomain-like
CJA_0230	SSF53474	alpha/beta-Hydrolases
CJA_0232	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_0232	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
CJA_0232	SSF55021	ACT-like
CJA_0233	SSF103473	MFS general substrate transporter
CJA_0235	SSF118196	YaeB-like
CJA_0236	SSF51445	(Trans)glycosidases
CJA_0238	SSF100950	NagB/RpiA/CoA transferase-like
CJA_0238	SSF75445	D-ribose-5-phosphate isomerase (RpiA), lid domain
CJA_0239	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
CJA_0239	SSF55021	ACT-like
CJA_0240	SSF47413	lambda repressor-like DNA-binding domains
CJA_0240	SSF53822	Periplasmic binding protein-like I
CJA_0242	SSF75005	Arabinanase/levansucrase/invertase
CJA_0243	SSF48208	Six-hairpin glycosidases
CJA_0244	SSF51445	(Trans)glycosidases
CJA_0246	SSF51011	Glycosyl hydrolase domain
CJA_0246	SSF51445	(Trans)glycosidases
CJA_0247	SSF47090	PGBD-like
CJA_0247	SSF53955	Lysozyme-like
CJA_0248	SSF101744	Rof/RNase P subunit-like
CJA_0249	SSF52172	CheY-like
CJA_0250	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_0251	SSF48557	L-aspartase-like
CJA_0253	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_0253	SSF52172	CheY-like
CJA_0253	SSF55785	PYP-like sensor domain (PAS domain)
CJA_0253	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_0255	SSF53098	Ribonuclease H-like
CJA_0257	SSF51445	(Trans)glycosidases
CJA_0260	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0262	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0262	SSF90123	ABC transporter transmembrane region
CJA_0264	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_0265	SSF46689	Homeodomain-like
CJA_0266	SSF53098	Ribonuclease H-like
CJA_0267	SSF102114	Radical SAM enzymes
CJA_0272	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_0273	SSF144091	Rhomboid-like
CJA_0274	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0274	SSF90123	ABC transporter transmembrane region
CJA_0275	SSF111369	HlyD-like secretion proteins
CJA_0276	SSF49695	gamma-Crystallin-like
CJA_0276	SSF49785	Galactose-binding domain-like
CJA_0276	SSF55486	Metalloproteases ("zincins"), catalytic domain
CJA_0278	SSF55785	PYP-like sensor domain (PAS domain)
CJA_0278	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_0279	SSF54427	NTF2-like
CJA_0280	SSF47413	lambda repressor-like DNA-binding domains
CJA_0280	SSF53822	Periplasmic binding protein-like I
CJA_0281	SSF103473	MFS general substrate transporter
CJA_0283	SSF56935	Porins
CJA_0284	SSF48208	Six-hairpin glycosidases
CJA_0285	SSF109854	DinB/YfiT-like putative metalloenzymes
CJA_0286	SSF56784	HAD-like
CJA_0287	SSF49384	Carbohydrate-binding domain
CJA_0287	SSF51445	(Trans)glycosidases
CJA_0287	SSF55545	beta-N-acetylhexosaminidase-like domain
CJA_0287	SSF81296	E set domains
CJA_0289	SSF100950	NagB/RpiA/CoA transferase-like
CJA_0291	SSF102829	Cell division protein ZapA-like
CJA_0293	SSF101327	YgfB-like
CJA_0294	SSF53092	Creatinase/prolidase N-terminal domain
CJA_0294	SSF55920	Creatinase/aminopeptidase
CJA_0295	SSF51905	FAD/NAD(P)-binding domain
CJA_0298	SSF50249	Nucleic acid-binding proteins
CJA_0300	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_0301	SSF55811	Nudix
CJA_0302	SSF52833	Thioredoxin-like
CJA_0303	SSF51161	Trimeric LpxA-like enzymes
CJA_0304	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_0306	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0307	SSF118352	HSP33 redox switch-like
CJA_0307	SSF64397	Hsp33 domain
CJA_0309	SSF55174	Alpha-L RNA-binding motif
CJA_0310	SSF56784	HAD-like
CJA_0311	SSF55811	Nudix
CJA_0312	SSF56655	Carbohydrate phosphatase
CJA_0314	SSF141868	EAL domain-like
CJA_0314	SSF55073	Nucleotide cyclase
CJA_0314	SSF55781	GAF domain-like
CJA_0316	SSF53850	Periplasmic binding protein-like II
CJA_0317	SSF161098	MetI-like
CJA_0318	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0319	SSF46785	"Winged helix" DNA-binding domain
CJA_0320	SSF53218	Molybdenum cofactor biosynthesis proteins
CJA_0321	SSF102114	Radical SAM enzymes
CJA_0323	SSF53790	Tetrapyrrole methylase
CJA_0324	SSF51905	FAD/NAD(P)-binding domain
CJA_0324	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
CJA_0324	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
CJA_0325	SSF50022	ISP domain
CJA_0326	SSF53850	Periplasmic binding protein-like II
CJA_0326	SSF55073	Nucleotide cyclase
CJA_0326	SSF55781	GAF domain-like
CJA_0327	SSF53927	Cytidine deaminase-like
CJA_0328	SSF52172	CheY-like
CJA_0329	SSF56112	Protein kinase-like (PK-like)
CJA_0329	SSF81606	PP2C-like
CJA_0330	SSF103473	MFS general substrate transporter
CJA_0334	SSF46689	Homeodomain-like
CJA_0335	SSF53098	Ribonuclease H-like
CJA_0343	SSF49299	PKD domain
CJA_0343	SSF49313	Cadherin-like
CJA_0343	SSF49464	Carboxypeptidase regulatory domain-like
CJA_0343	SSF50978	WD40 repeat-like
CJA_0344	SSF63829	Calcium-dependent phosphotriesterase
CJA_0345	SSF51419	PLP-binding barrel
CJA_0347	SSF46689	Homeodomain-like
CJA_0347	SSF53697	SIS domain
CJA_0348	SSF51338	Composite domain of metallo-dependent hydrolases
CJA_0348	SSF51556	Metallo-dependent hydrolases
CJA_0349	SSF55298	YjgF-like
CJA_0350	SSF51445	(Trans)glycosidases
CJA_0350	SSF55545	beta-N-acetylhexosaminidase-like domain
CJA_0352	SSF46689	Homeodomain-like
CJA_0353	SSF56935	Porins
CJA_0354	SSF51905	FAD/NAD(P)-binding domain
CJA_0355	SSF51197	Clavaminate synthase-like
CJA_0356	SSF51905	FAD/NAD(P)-binding domain
CJA_0357	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_0358	SSF74650	Galactose mutarotase-like
CJA_0358	SSF81296	E set domains
CJA_0359	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_0359	SSF52172	CheY-like
CJA_0359	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_0360	SSF52833	Thioredoxin-like
CJA_0361	SSF50249	Nucleic acid-binding proteins
CJA_0361	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0361	SSF68912	Rho N-terminal domain-like
CJA_0362	SSF143968	UbiD C-terminal domain-like
CJA_0362	SSF50475	FMN-binding split barrel
CJA_0364	SSF51161	Trimeric LpxA-like enzymes
CJA_0367	SSF56112	Protein kinase-like (PK-like)
CJA_0368	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0369	SSF48452	TPR-like
CJA_0370	SSF140931	Fic-like
CJA_0371	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
CJA_0371	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
CJA_0371	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
CJA_0372	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
CJA_0372	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
CJA_0372	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
CJA_0373	SSF111369	HlyD-like secretion proteins
CJA_0374	SSF49384	Carbohydrate-binding domain
CJA_0374	SSF50685	Barwin-like endoglucanases
CJA_0374	SSF57615	Type X cellulose binding domain, CBDX
CJA_0375	SSF52833	Thioredoxin-like
CJA_0376	SSF51905	FAD/NAD(P)-binding domain
CJA_0376	SSF52833	Thioredoxin-like
CJA_0377	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_0378	SSF53474	alpha/beta-Hydrolases
CJA_0383	SSF54427	NTF2-like
CJA_0384	SSF81853	Family 10 polysaccharide lyase
CJA_0385	SSF51621	Phosphoenolpyruvate/pyruvate domain
CJA_0386	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0387	SSF55083	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
CJA_0388	SSF81301	Nucleotidyltransferase
CJA_0388	SSF81891	Poly A polymerase C-terminal region-like
CJA_0389	SSF52172	CheY-like
CJA_0389	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0390	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_0390	SSF55785	PYP-like sensor domain (PAS domain)
CJA_0390	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_0392	SSF52374	Nucleotidylyl transferase
CJA_0393	SSF109635	DnaK suppressor protein DksA, alpha-hairpin domain
CJA_0393	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
CJA_0394	SSF103481	Multidrug resistance efflux transporter EmrE
CJA_0398	SSF49452	Starch-binding domain-like
CJA_0398	SSF51011	Glycosyl hydrolase domain
CJA_0398	SSF51445	(Trans)glycosidases
CJA_0400	SSF81342	Transmembrane di-heme cytochromes
CJA_0401	SSF53649	Alkaline phosphatase-like
CJA_0404	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0405	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
CJA_0406	SSF110997	Sporulation related repeat
CJA_0407	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0408	SSF57652	HIPIP (high potential iron protein)
CJA_0409	SSF143800	L28p-like
CJA_0410	SSF50199	Staphylococcal nuclease
CJA_0411	SSF53955	Lysozyme-like
CJA_0411	SSF56601	beta-lactamase/transpeptidase-like
CJA_0412	SSF53067	Actin-like ATPase domain
CJA_0417	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0418	SSF56796	Dehydroquinate synthase-like
CJA_0419	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0420	SSF51230	Single hybrid motif
CJA_0421	SSF101790	Aminomethyltransferase beta-barrel domain
CJA_0421	SSF103025	Folate-binding domain
CJA_0422	SSF49777	PEBP-like
CJA_0423	SSF49879	SMAD/FHA domain
CJA_0424	SSF50494	Trypsin-like serine proteases
CJA_0425	SSF53271	PRTase-like
CJA_0426	SSF102114	Radical SAM enzymes
CJA_0427	SSF53383	PLP-dependent transferases
CJA_0428	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_0428	SSF53474	alpha/beta-Hydrolases
CJA_0429	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0434	SSF74942	YhbC-like, C-terminal domain
CJA_0434	SSF75420	YhbC-like, N-terminal domain
CJA_0435	SSF47794	Rad51 N-terminal domain-like
CJA_0435	SSF50249	Nucleic acid-binding proteins
CJA_0435	SSF54814	Prokaryotic type KH domain (KH-domain type II)
CJA_0435	SSF69705	Transcription factor NusA, N-terminal domain
CJA_0436	SSF46955	Putative DNA-binding domain
CJA_0436	SSF50447	Translation proteins
CJA_0436	SSF52156	Initiation factor IF2/eIF5b, domain 3
CJA_0436	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0437	SSF89919	Ribosome-binding factor A, RbfA
CJA_0438	SSF55120	Pseudouridine synthase
CJA_0438	SSF88697	PUA domain-like
CJA_0439	SSF47060	S15/NS1 RNA-binding domain
CJA_0440	SSF50249	Nucleic acid-binding proteins
CJA_0440	SSF54211	Ribosomal protein S5 domain 2-like
CJA_0440	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
CJA_0440	SSF55666	Ribonuclease PH domain 2-like
CJA_0441	SSF51445	(Trans)glycosidases
CJA_0442	SSF103473	MFS general substrate transporter
CJA_0443	SSF50324	Inorganic pyrophosphatase
CJA_0444	SSF49879	SMAD/FHA domain
CJA_0445	SSF52833	Thioredoxin-like
CJA_0446	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
CJA_0447	SSF53098	Ribonuclease H-like
CJA_0450	SSF52266	SGNH hydrolase
CJA_0451	SSF52266	SGNH hydrolase
CJA_0452	SSF48019	post-AAA+ oligomerization domain-like
CJA_0452	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0454	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
CJA_0454	SSF50677	ValRS/IleRS/LeuRS editing domain
CJA_0454	SSF52374	Nucleotidylyl transferase
CJA_0456	SSF53474	alpha/beta-Hydrolases
CJA_0457	SSF52743	Subtilisin-like
CJA_0457	SSF54897	Protease propeptides/inhibitors
CJA_0457	SSF81296	E set domains
CJA_0458	SSF141091	L21p-like
CJA_0459	SSF110324	Ribosomal L27 protein-like
CJA_0460	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0460	SSF82051	Obg GTP-binding protein N-terminal domain
CJA_0461	SSF53633	Carbamate kinase-like
CJA_0461	SSF88697	PUA domain-like
CJA_0462	SSF49373	Invasin/intimin cell-adhesion fragments
CJA_0463	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_0463	SSF88697	PUA domain-like
CJA_0464	SSF56784	HAD-like
CJA_0465	SSF55811	Nudix
CJA_0466	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
CJA_0466	SSF51621	Phosphoenolpyruvate/pyruvate domain
CJA_0466	SSF52009	Phosphohistidine domain
CJA_0466	SSF55781	GAF domain-like
CJA_0468	SSF55831	Thymidylate synthase/dCMP hydroxymethylase
CJA_0469	SSF53597	Dihydrofolate reductase-like
CJA_0475	SSF74653	TolA/TonB C-terminal domain
CJA_0476	SSF48452	TPR-like
CJA_0477	SSF143975	IlvD/EDD N-terminal domain-like
CJA_0477	SSF52016	LeuD/IlvD-like
CJA_0478	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_0479	SSF53633	Carbamate kinase-like
CJA_0479	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_0480	SSF53187	Zn-dependent exopeptidases
CJA_0480	SSF55031	Bacterial exopeptidase dimerisation domain
CJA_0482	SSF109755	PhoU-like
CJA_0483	SSF160246	EspE N-terminal domain-like
CJA_0483	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0484	SSF47616	GST C-terminal domain-like
CJA_0484	SSF52833	Thioredoxin-like
CJA_0491	SSF51445	(Trans)glycosidases
CJA_0492	SSF51445	(Trans)glycosidases
CJA_0494	SSF49785	Galactose-binding domain-like
CJA_0494	SSF69318	Integrin alpha N-terminal domain
CJA_0495	SSF53850	Periplasmic binding protein-like II
CJA_0496	SSF49303	beta-Galactosidase/glucuronidase domain
CJA_0496	SSF49785	Galactose-binding domain-like
CJA_0496	SSF51445	(Trans)glycosidases
CJA_0497	SSF51445	(Trans)glycosidases
CJA_0498	SSF56935	Porins
CJA_0500	SSF81301	Nucleotidyltransferase
CJA_0500	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
CJA_0501	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
CJA_0502	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_0503	SSF56112	Protein kinase-like (PK-like)
CJA_0504	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_0506	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_0508	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0508	SSF90123	ABC transporter transmembrane region
CJA_0509	SSF52374	Nucleotidylyl transferase
CJA_0509	SSF53613	Ribokinase-like
CJA_0511	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
CJA_0512	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
CJA_0513	SSF56796	Dehydroquinate synthase-like
CJA_0515	SSF50022	ISP domain
CJA_0516	SSF50156	PDZ domain-like
CJA_0516	SSF50494	Trypsin-like serine proteases
CJA_0518	SSF51206	cAMP-binding domain-like
CJA_0520	SSF55166	Hedgehog/DD-peptidase
CJA_0521	SSF103473	MFS general substrate transporter
CJA_0522	SSF51161	Trimeric LpxA-like enzymes
CJA_0528	SSF161098	MetI-like
CJA_0529	SSF53850	Periplasmic binding protein-like II
CJA_0530	SSF48150	DNA-glycosylase
CJA_0530	SSF55811	Nudix
CJA_0531	SSF111148	YggX-like
CJA_0532	SSF49303	beta-Galactosidase/glucuronidase domain
CJA_0532	SSF49785	Galactose-binding domain-like
CJA_0532	SSF51445	(Trans)glycosidases
CJA_0533	SSF49785	Galactose-binding domain-like
CJA_0533	SSF51126	Pectin lyase-like
CJA_0534	SSF46785	"Winged helix" DNA-binding domain
CJA_0535	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_0536	SSF52833	Thioredoxin-like
CJA_0537	SSF51905	FAD/NAD(P)-binding domain
CJA_0537	SSF53474	alpha/beta-Hydrolases
CJA_0540	SSF51338	Composite domain of metallo-dependent hydrolases
CJA_0540	SSF51556	Metallo-dependent hydrolases
CJA_0541	SSF46689	Homeodomain-like
CJA_0541	SSF48498	Tetracyclin repressor-like, C-terminal domain
CJA_0542	SSF53822	Periplasmic binding protein-like I
CJA_0545	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0546	SSF47741	CO dehydrogenase ISP C-domain like
CJA_0546	SSF54292	2Fe-2S ferredoxin-like
CJA_0546	SSF55447	CO dehydrogenase flavoprotein C-terminal domain-like
CJA_0546	SSF56176	FAD-binding/transporter-associated domain-like
CJA_0547	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
CJA_0547	SSF56003	Molybdenum cofactor-binding domain
CJA_0549	SSF158694	UraD-Like
CJA_0550	SSF49472	Transthyretin (synonym: prealbumin)
CJA_0551	SSF51338	Composite domain of metallo-dependent hydrolases
CJA_0551	SSF51556	Metallo-dependent hydrolases
CJA_0552	SSF46626	Cytochrome c
CJA_0553	SSF54909	Dimeric alpha+beta barrel
CJA_0555	SSF53098	Ribonuclease H-like
CJA_0556	SSF46689	Homeodomain-like
CJA_0559	SSF49785	Galactose-binding domain-like
CJA_0559	SSF69318	Integrin alpha N-terminal domain
CJA_0560	SSF56935	Porins
CJA_0561	SSF88713	Glycoside hydrolase/deacetylase
CJA_0563	SSF51556	Metallo-dependent hydrolases
CJA_0565	SSF56935	Porins
CJA_0570	SSF74653	TolA/TonB C-terminal domain
CJA_0571	SSF48452	TPR-like
CJA_0571	SSF81901	HCP-like
CJA_0572	SSF53167	Purine and uridine phosphorylases
CJA_0574	SSF75304	Amidase signature (AS) enzymes
CJA_0575	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
CJA_0577	SSF53383	PLP-dependent transferases
CJA_0578	SSF51556	Metallo-dependent hydrolases
CJA_0579	SSF53187	Zn-dependent exopeptidases
CJA_0579	SSF55031	Bacterial exopeptidase dimerisation domain
CJA_0580	SSF53271	PRTase-like
CJA_0581	SSF51182	RmlC-like cupins
CJA_0584	SSF51556	Metallo-dependent hydrolases
CJA_0587	SSF56300	Metallo-dependent phosphatases
CJA_0588	SSF141371	PilZ domain-like
CJA_0589	SSF49313	Cadherin-like
CJA_0589	SSF51126	Pectin lyase-like
CJA_0589	SSF56925	OMPA-like
CJA_0590	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0592	SSF88874	Receptor-binding domain of short tail fibre protein gp12
CJA_0593	SSF88874	Receptor-binding domain of short tail fibre protein gp12
CJA_0594	SSF88874	Receptor-binding domain of short tail fibre protein gp12
CJA_0596	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_0597	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0599	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0601	SSF46785	"Winged helix" DNA-binding domain
CJA_0602	SSF53474	alpha/beta-Hydrolases
CJA_0603	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0605	SSF52833	Thioredoxin-like
CJA_0606	SSF54427	NTF2-like
CJA_0610	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_0611	SSF56935	Porins
CJA_0616	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_0618	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_0619	SSF51445	(Trans)glycosidases
CJA_0620	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_0622	SSF160246	EspE N-terminal domain-like
CJA_0622	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0627	SSF55205	EPT/RTPC-like
CJA_0628	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
CJA_0632	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0633	SSF53098	Ribonuclease H-like
CJA_0634	SSF53098	Ribonuclease H-like
CJA_0635	SSF52467	DHS-like NAD/FAD-binding domain
CJA_0636	SSF116734	DNA methylase specificity domain
CJA_0638	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_0639	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0640	SSF47413	lambda repressor-like DNA-binding domains
CJA_0641	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0641	SSF81271	TGS-like
CJA_0642	SSF53178	Peptidyl-tRNA hydrolase-like
CJA_0643	SSF50715	Ribosomal protein L25-like
CJA_0644	SSF53271	PRTase-like
CJA_0646	SSF54211	Ribosomal protein S5 domain 2-like
CJA_0646	SSF55060	GHMP Kinase, C-terminal domain
CJA_0647	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
CJA_0648	SSF48452	TPR-like
CJA_0650	SSF53098	Ribonuclease H-like
CJA_0651	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_0651	SSF69075	Glutamyl tRNA-reductase dimerization domain
CJA_0651	SSF69742	Glutamyl tRNA-reductase catalytic, N-terminal domain
CJA_0652	SSF75620	Release factor
CJA_0653	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_0654	SSF69572	Activating enzymes of the ubiquitin-like proteins
CJA_0657	SSF53613	Ribokinase-like
CJA_0659	SSF53955	Lysozyme-like
CJA_0659	SSF56601	beta-lactamase/transpeptidase-like
CJA_0661	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
CJA_0661	SSF88946	Sigma2 domain of RNA polymerase sigma factors
CJA_0664	SSF52467	DHS-like NAD/FAD-binding domain
CJA_0664	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
CJA_0665	SSF55021	ACT-like
CJA_0666	SSF50486	FMT C-terminal domain-like
CJA_0667	SSF46785	"Winged helix" DNA-binding domain
CJA_0667	SSF53850	Periplasmic binding protein-like II
CJA_0668	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
CJA_0668	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_0676	SSF50621	Alanine racemase C-terminal domain-like
CJA_0676	SSF51419	PLP-binding barrel
CJA_0677	SSF46785	"Winged helix" DNA-binding domain
CJA_0677	SSF50037	C-terminal domain of transcriptional repressors
CJA_0677	SSF55681	Class II aaRS and biotin synthetases
CJA_0678	SSF53067	Actin-like ATPase domain
CJA_0679	SSF110997	Sporulation related repeat
CJA_0684	SSF50447	Translation proteins
CJA_0684	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
CJA_0684	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0687	SSF50104	Translation proteins SH3-like domain
CJA_0687	SSF82679	N-utilization substance G protein NusG, N-terminal domain
CJA_0688	SSF46906	Ribosomal protein L11, C-terminal domain
CJA_0688	SSF54747	Ribosomal L11/L12e N-terminal domain
CJA_0689	SSF56808	Ribosomal protein L1
CJA_0690	SSF160369	Ribosomal protein L10-like
CJA_0691	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain
CJA_0691	SSF54736	ClpS-like
CJA_0692	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
CJA_0693	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
CJA_0694	SSF50249	Nucleic acid-binding proteins
CJA_0695	SSF47973	Ribosomal protein S7
CJA_0696	SSF50447	Translation proteins
CJA_0696	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0696	SSF54211	Ribosomal protein S5 domain 2-like
CJA_0696	SSF54980	EF-G C-terminal domain-like
CJA_0697	SSF50447	Translation proteins
CJA_0697	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
CJA_0697	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0698	SSF54999	Ribosomal protein S10
CJA_0699	SSF50447	Translation proteins
CJA_0700	SSF52166	Ribosomal protein L4
CJA_0701	SSF54189	Ribosomal proteins S24e, L23 and L15e
CJA_0702	SSF50104	Translation proteins SH3-like domain
CJA_0702	SSF50249	Nucleic acid-binding proteins
CJA_0703	SSF54570	Ribosomal protein S19
CJA_0704	SSF54843	Ribosomal protein L22
CJA_0705	SSF54814	Prokaryotic type KH domain (KH-domain type II)
CJA_0705	SSF54821	Ribosomal protein S3 C-terminal domain
CJA_0706	SSF54686	Ribosomal protein L16p/L10e
CJA_0707	SSF46561	Ribosomal protein L29 (L29p)
CJA_0708	SSF50249	Nucleic acid-binding proteins
CJA_0709	SSF50193	Ribosomal protein L14
CJA_0710	SSF50104	Translation proteins SH3-like domain
CJA_0711	SSF55282	RL5-like
CJA_0712	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
CJA_0713	SSF56047	Ribosomal protein S8
CJA_0714	SSF56053	Ribosomal protein L6
CJA_0715	SSF53137	Translational machinery components
CJA_0716	SSF54211	Ribosomal protein S5 domain 2-like
CJA_0716	SSF54768	dsRNA-binding domain-like
CJA_0717	SSF55129	Ribosomal protein L30p/L7e
CJA_0718	SSF52080	Ribosomal proteins L15p and L18e
CJA_0719	SSF103491	Preprotein translocase SecY subunit
CJA_0720	SSF57840	Ribosomal protein L36
CJA_0721	SSF46946	S13-like H2TH domain
CJA_0722	SSF53137	Translational machinery components
CJA_0723	SSF55174	Alpha-L RNA-binding motif
CJA_0724	SSF47789	C-terminal domain of RNA polymerase alpha subunit
CJA_0724	SSF55257	RBP11-like subunits of RNA polymerase
CJA_0724	SSF56553	Insert subdomain of RNA polymerase alpha subunit
CJA_0725	SSF64263	Prokaryotic ribosomal protein L17
CJA_0726	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0727	SSF103473	MFS general substrate transporter
CJA_0728	SSF50249	Nucleic acid-binding proteins
CJA_0729	SSF47413	lambda repressor-like DNA-binding domains
CJA_0729	SSF53822	Periplasmic binding protein-like I
CJA_0730	SSF103473	MFS general substrate transporter
CJA_0731	SSF48208	Six-hairpin glycosidases
CJA_0731	SSF74650	Galactose mutarotase-like
CJA_0732	SSF51011	Glycosyl hydrolase domain
CJA_0732	SSF51445	(Trans)glycosidases
CJA_0733	SSF56935	Porins
CJA_0735	SSF51011	Glycosyl hydrolase domain
CJA_0735	SSF51445	(Trans)glycosidases
CJA_0735	SSF81296	E set domains
CJA_0736	SSF51445	(Trans)glycosidases
CJA_0737	SSF51445	(Trans)glycosidases
CJA_0739	SSF55154	CYTH-like phosphatases
CJA_0744	SSF101386	all-alpha NTP pyrophosphatases
CJA_0745	SSF141734	HisI-like
CJA_0746	SSF51430	NAD(P)-linked oxidoreductase
CJA_0747	SSF51905	FAD/NAD(P)-binding domain
CJA_0748	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_0749	SSF53901	Thiolase-like
CJA_0750	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
CJA_0751	SSF48576	Terpenoid synthases
CJA_0752	SSF56214	4'-phosphopantetheinyl transferase
CJA_0753	SSF54534	FKBP-like
CJA_0754	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_0754	SSF52172	CheY-like
CJA_0754	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_0755	SSF56935	Porins
CJA_0756	SSF48256	Citrate synthase
CJA_0757	SSF141868	EAL domain-like
CJA_0757	SSF52172	CheY-like
CJA_0757	SSF55073	Nucleotide cyclase
CJA_0757	SSF55785	PYP-like sensor domain (PAS domain)
CJA_0758	SSF48256	Citrate synthase
CJA_0759	SSF52467	DHS-like NAD/FAD-binding domain
CJA_0759	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
CJA_0760	SSF46626	Cytochrome c
CJA_0761	SSF46689	Homeodomain-like
CJA_0762	SSF53218	Molybdenum cofactor biosynthesis proteins
CJA_0762	SSF63867	MoeA C-terminal domain-like
CJA_0762	SSF63882	MoeA N-terminal region -like
CJA_0764	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
CJA_0764	SSF88946	Sigma2 domain of RNA polymerase sigma factors
CJA_0765	SSF117023	DNA primase DnaG, C-terminal domain
CJA_0765	SSF56731	DNA primase core
CJA_0765	SSF57783	Zinc beta-ribbon
CJA_0766	SSF89095	GatB/YqeY motif
CJA_0768	SSF53067	Actin-like ATPase domain
CJA_0769	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
CJA_0770	SSF55083	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
CJA_0771	SSF143865	CorA soluble domain-like
CJA_0771	SSF144083	Magnesium transport protein CorA, transmembrane region
CJA_0772	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_0773	SSF81301	Nucleotidyltransferase
CJA_0773	SSF81891	Poly A polymerase C-terminal region-like
CJA_0774	SSF103481	Multidrug resistance efflux transporter EmrE
CJA_0776	SSF50370	Ricin B-like lectins
CJA_0777	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_0778	SSF46626	Cytochrome c
CJA_0778	SSF49785	Galactose-binding domain-like
CJA_0779	SSF82549	DAK1/DegV-like
CJA_0780	SSF53098	Ribonuclease H-like
CJA_0781	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_0782	SSF46894	C-terminal effector domain of the bipartite response regulators
CJA_0782	SSF52172	CheY-like
CJA_0785	SSF53720	ALDH-like
CJA_0786	SSF52374	Nucleotidylyl transferase
CJA_0787	SSF81301	Nucleotidyltransferase
CJA_0788	SSF75217	alpha/beta knot
CJA_0789	SSF56519	Penicillin binding protein dimerisation domain
CJA_0789	SSF56601	beta-lactamase/transpeptidase-like
CJA_0791	SSF53955	Lysozyme-like
CJA_0792	SSF110997	Sporulation related repeat
CJA_0792	SSF50685	Barwin-like endoglucanases
CJA_0793	SSF56601	beta-lactamase/transpeptidase-like
CJA_0794	SSF52833	Thioredoxin-like
CJA_0795	SSF117991	YbeD/HP0495-like
CJA_0796	SSF55681	Class II aaRS and biotin synthetases
CJA_0797	SSF102114	Radical SAM enzymes
CJA_0798	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_0799	SSF49899	Concanavalin A-like lectins/glucanases
CJA_0799	SSF75005	Arabinanase/levansucrase/invertase
CJA_0800	SSF56935	Porins
CJA_0801	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
CJA_0803	SSF48208	Six-hairpin glycosidases
CJA_0805	SSF75005	Arabinanase/levansucrase/invertase
CJA_0806	SSF75005	Arabinanase/levansucrase/invertase
CJA_0807	SSF74650	Galactose mutarotase-like
CJA_0816	SSF50370	Ricin B-like lectins
CJA_0816	SSF75005	Arabinanase/levansucrase/invertase
CJA_0817	SSF51445	(Trans)glycosidases
CJA_0818	SSF50370	Ricin B-like lectins
CJA_0818	SSF75005	Arabinanase/levansucrase/invertase
CJA_0819	SSF50370	Ricin B-like lectins
CJA_0819	SSF75005	Arabinanase/levansucrase/invertase
CJA_0821	SSF47413	lambda repressor-like DNA-binding domains
CJA_0822	SSF53098	Ribonuclease H-like
CJA_0823	SSF46689	Homeodomain-like
CJA_0831	SSF53474	alpha/beta-Hydrolases
CJA_0831	SSF57615	Type X cellulose binding domain, CBDX
CJA_0832	SSF53474	alpha/beta-Hydrolases
CJA_0833	SSF46785	"Winged helix" DNA-binding domain
CJA_0833	SSF48008	GntR ligand-binding domain-like
CJA_0834	SSF141868	EAL domain-like
CJA_0834	SSF55073	Nucleotide cyclase
CJA_0834	SSF55781	GAF domain-like
CJA_0834	SSF55785	PYP-like sensor domain (PAS domain)
CJA_0835	SSF51905	FAD/NAD(P)-binding domain
CJA_0836	SSF48452	TPR-like
CJA_0837	SSF48452	TPR-like
CJA_0837	SSF54001	Cysteine proteinases
CJA_0838	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_0838	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
CJA_0839	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_0840	SSF46689	Homeodomain-like
CJA_0841	SSF55073	Nucleotide cyclase
CJA_0842	SSF49464	Carboxypeptidase regulatory domain-like
CJA_0842	SSF56935	Porins
CJA_0843	SSF50956	Thermostable phytase (3-phytase)
CJA_0844	SSF101898	NHL repeat
CJA_0846	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0847	SSF47413	lambda repressor-like DNA-binding domains
CJA_0847	SSF53822	Periplasmic binding protein-like I
CJA_0848	SSF103473	MFS general substrate transporter
CJA_0849	SSF48208	Six-hairpin glycosidases
CJA_0849	SSF74650	Galactose mutarotase-like
CJA_0852	SSF46992	Ribosomal protein S20
CJA_0854	SSF48452	TPR-like
CJA_0854	SSF56112	Protein kinase-like (PK-like)
CJA_0856	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_0857	SSF56112	Protein kinase-like (PK-like)
CJA_0859	SSF109998	Triger factor/SurA peptide-binding domain-like
CJA_0859	SSF54534	FKBP-like
CJA_0860	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
CJA_0861	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_0862	SSF110069	ApaG-like
CJA_0863	SSF56300	Metallo-dependent phosphatases
CJA_0865	SSF46626	Cytochrome c
CJA_0865	SSF49503	Cupredoxins
CJA_0865	SSF81464	Cytochrome c oxidase subunit II-like, transmembrane region
CJA_0866	SSF81442	Cytochrome c oxidase subunit I-like
CJA_0867	SSF110111	Ctag/Cox11
CJA_0868	SSF81452	Cytochrome c oxidase subunit III-like
CJA_0874	SSF110087	DR1885-like metal-binding protein
CJA_0875	SSF52833	Thioredoxin-like
CJA_0878	SSF56935	Porins
CJA_0879	SSF53098	Ribonuclease H-like
CJA_0880	SSF53383	PLP-dependent transferases
CJA_0881	SSF51391	Thiamin phosphate synthase
CJA_0884	SSF81340	Clc chloride channel
CJA_0885	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_0885	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
CJA_0888	SSF89360	HesB-like domain
CJA_0889	SSF53067	Actin-like ATPase domain
CJA_0890	SSF51261	Duplicated hybrid motif
CJA_0891	SSF52374	Nucleotidylyl transferase
CJA_0891	SSF55174	Alpha-L RNA-binding motif
CJA_0906	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_0907	SSF46689	Homeodomain-like
CJA_0907	SSF52172	CheY-like
CJA_0908	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_0908	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_0910	SSF50447	Translation proteins
CJA_0910	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0910	SSF54980	EF-G C-terminal domain-like
CJA_0913	SSF54626	Chalcone isomerase
CJA_0913	SSF74653	TolA/TonB C-terminal domain
CJA_0914	SSF51206	cAMP-binding domain-like
CJA_0915	SSF141371	PilZ domain-like
CJA_0920	SSF55826	YbaK/ProRS associated domain
CJA_0921	SSF53383	PLP-dependent transferases
CJA_0923	SSF140478	LemA-like
CJA_0925	SSF53697	SIS domain
CJA_0926	SSF52980	Restriction endonuclease-like
CJA_0927	SSF53822	Periplasmic binding protein-like I
CJA_0928	SSF53790	Tetrapyrrole methylase
CJA_0929	SSF56935	Porins
CJA_0934	SSF47413	lambda repressor-like DNA-binding domains
CJA_0935	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
CJA_0939	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0941	SSF48452	TPR-like
CJA_0943	SSF52833	Thioredoxin-like
CJA_0944	SSF48452	TPR-like
CJA_0944	SSF50630	Acid proteases
CJA_0945	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
CJA_0946	SSF53649	Alkaline phosphatase-like
CJA_0947	SSF51695	PLC-like phosphodiesterases
CJA_0951	SSF51197	Clavaminate synthase-like
CJA_0953	SSF46894	C-terminal effector domain of the bipartite response regulators
CJA_0953	SSF52172	CheY-like
CJA_0954	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_0954	SSF52172	CheY-like
CJA_0954	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_0956	SSF53822	Periplasmic binding protein-like I
CJA_0959	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0960	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0963	SSF141130	Acetamidase/Formamidase-like
CJA_0965	SSF46689	Homeodomain-like
CJA_0965	SSF48498	Tetracyclin repressor-like, C-terminal domain
CJA_0967	SSF52317	Class I glutamine amidotransferase-like
CJA_0969	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_0970	SSF103481	Multidrug resistance efflux transporter EmrE
CJA_0971	SSF53213	LigB-like
CJA_0973	SSF52172	CheY-like
CJA_0973	SSF55073	Nucleotide cyclase
CJA_0974	SSF144091	Rhomboid-like
CJA_0975	SSF48239	Terpenoid cyclases/Protein prenyltransferases
CJA_0975	SSF49452	Starch-binding domain-like
CJA_0975	SSF49464	Carboxypeptidase regulatory domain-like
CJA_0975	SSF53300	vWA-like
CJA_0976	SSF54001	Cysteine proteinases
CJA_0980	SSF46785	"Winged helix" DNA-binding domain
CJA_0981	SSF74653	TolA/TonB C-terminal domain
CJA_0982	SSF74653	TolA/TonB C-terminal domain
CJA_0983	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_0984	SSF102114	Radical SAM enzymes
CJA_0986	SSF56059	Glutathione synthetase ATP-binding domain-like
CJA_0988	SSF51055	Carbohydrate binding domain
CJA_0988	SSF51445	(Trans)glycosidases
CJA_0988	SSF54556	Chitinase insertion domain
CJA_0991	SSF56024	Phospholipase D/nuclease
CJA_0993	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
CJA_0994	SSF54001	Cysteine proteinases
CJA_0995	SSF56059	Glutathione synthetase ATP-binding domain-like
CJA_0996	SSF49695	gamma-Crystallin-like
CJA_0996	SSF49785	Galactose-binding domain-like
CJA_0996	SSF53955	Lysozyme-like
CJA_0998	SSF46626	Cytochrome c
CJA_0998	SSF50952	Soluble quinoprotein glucose dehydrogenase
CJA_0999	SSF54001	Cysteine proteinases
CJA_1001	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
CJA_1002	SSF50182	Sm-like ribonucleoproteins
CJA_1002	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
CJA_1002	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
CJA_1006	SSF142019	Nqo1 FMN-binding domain-like
CJA_1006	SSF46548	alpha-helical ferredoxin
CJA_1007	SSF54862	4Fe-4S ferredoxins
CJA_1009	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
CJA_1009	SSF50249	Nucleic acid-binding proteins
CJA_1009	SSF52374	Nucleotidylyl transferase
CJA_1009	SSF57770	Methionyl-tRNA synthetase (MetRS), Zn-domain
CJA_1011	SSF46557	GreA transcript cleavage protein, N-terminal domain
CJA_1011	SSF54534	FKBP-like
CJA_1012	SSF143120	YefM-like
CJA_1013	SSF143011	RelE-like
CJA_1015	SSF53474	alpha/beta-Hydrolases
CJA_1015	SSF69322	Tricorn protease domain 2
CJA_1016	SSF52402	Adenine nucleotide alpha hydrolases-like
CJA_1016	SSF56037	PheT/TilS domain
CJA_1016	SSF82829	MesJ substrate recognition domain-like
CJA_1017	SSF50965	Galactose oxidase, central domain
CJA_1018	SSF46626	Cytochrome c
CJA_1023	SSF50022	ISP domain
CJA_1025	SSF53955	Lysozyme-like
CJA_1027	SSF50249	Nucleic acid-binding proteins
CJA_1027	SSF55261	GAD domain-like
CJA_1027	SSF55681	Class II aaRS and biotin synthetases
CJA_1028	SSF75625	YebC-like
CJA_1029	SSF53098	Ribonuclease H-like
CJA_1030	SSF46929	DNA helicase RuvA subunit, C-terminal domain
CJA_1030	SSF47781	RuvA domain 2-like
CJA_1030	SSF50249	Nucleic acid-binding proteins
CJA_1031	SSF46785	"Winged helix" DNA-binding domain
CJA_1031	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1034	SSF74653	TolA/TonB C-terminal domain
CJA_1035	SSF52964	TolB, N-terminal domain
CJA_1035	SSF69304	Tricorn protease N-terminal domain
CJA_1036	SSF103088	OmpA-like
CJA_1037	SSF48452	TPR-like
CJA_1040	SSF46689	Homeodomain-like
CJA_1040	SSF48498	Tetracyclin repressor-like, C-terminal domain
CJA_1042	SSF55298	YjgF-like
CJA_1043	SSF52768	Arginase/deacetylase
CJA_1044	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1044	SSF52210	Succinyl-CoA synthetase domains
CJA_1044	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_1045	SSF53649	Alkaline phosphatase-like
CJA_1046	SSF141571	Pentapeptide repeat-like
CJA_1046	SSF55073	Nucleotide cyclase
CJA_1049	SSF51905	FAD/NAD(P)-binding domain
CJA_1050	SSF56935	Porins
CJA_1052	SSF48452	TPR-like
CJA_1056	SSF48403	Ankyrin repeat
CJA_1057	SSF47175	Cytochromes
CJA_1058	SSF81342	Transmembrane di-heme cytochromes
CJA_1059	SSF53474	alpha/beta-Hydrolases
CJA_1060	SSF50447	Translation proteins
CJA_1060	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1060	SSF54211	Ribosomal protein S5 domain 2-like
CJA_1060	SSF54980	EF-G C-terminal domain-like
CJA_1061	SSF53383	PLP-dependent transferases
CJA_1062	SSF103473	MFS general substrate transporter
CJA_1063	SSF47090	PGBD-like
CJA_1063	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1065	SSF47240	Ferritin-like
CJA_1067	SSF52833	Thioredoxin-like
CJA_1068	SSF52141	Uracil-DNA glycosylase-like
CJA_1069	SSF56935	Porins
CJA_1070	SSF51905	FAD/NAD(P)-binding domain
CJA_1071	SSF53383	PLP-dependent transferases
CJA_1072	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1072	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
CJA_1072	SSF55021	ACT-like
CJA_1073	SSF102705	NIF3 (NGG1p interacting factor 3)-like
CJA_1074	SSF55811	Nudix
CJA_1075	SSF56801	Acetyl-CoA synthetase-like
CJA_1076	SSF117892	Band 7/SPFH domain
CJA_1077	SSF103473	MFS general substrate transporter
CJA_1077	SSF141322	NfeD domain-like
CJA_1078	SSF52151	FabD/lysophospholipase-like
CJA_1080	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
CJA_1080	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
CJA_1082	SSF55120	Pseudouridine synthase
CJA_1083	SSF49899	Concanavalin A-like lectins/glucanases
CJA_1084	SSF103481	Multidrug resistance efflux transporter EmrE
CJA_1087	SSF46894	C-terminal effector domain of the bipartite response regulators
CJA_1087	SSF52172	CheY-like
CJA_1088	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_1090	SSF55103	FAD-linked oxidases, C-terminal domain
CJA_1090	SSF56176	FAD-binding/transporter-associated domain-like
CJA_1091	SSF53187	Zn-dependent exopeptidases
CJA_1091	SSF55031	Bacterial exopeptidase dimerisation domain
CJA_1092	SSF49764	HSP20-like chaperones
CJA_1093	SSF49764	HSP20-like chaperones
CJA_1094	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1097	SSF47598	Ribbon-helix-helix
CJA_1098	SSF88723	PIN domain-like
CJA_1099	SSF75625	YebC-like
CJA_1100	SSF51161	Trimeric LpxA-like enzymes
CJA_1101	SSF52833	Thioredoxin-like
CJA_1102	SSF48150	DNA-glycosylase
CJA_1103	SSF53383	PLP-dependent transferases
CJA_1104	SSF109604	HD-domain/PDEase-like
CJA_1104	SSF55021	ACT-like
CJA_1104	SSF81301	Nucleotidyltransferase
CJA_1104	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
CJA_1105	SSF55920	Creatinase/aminopeptidase
CJA_1107	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
CJA_1107	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
CJA_1109	SSF51658	Xylose isomerase-like
CJA_1110	SSF52313	Ribosomal protein S2
CJA_1111	SSF46934	UBA-like
CJA_1111	SSF54713	Elongation factor Ts (EF-Ts), dimerisation domain
CJA_1114	SSF53633	Carbamate kinase-like
CJA_1115	SSF55194	Ribosome recycling factor, RRF
CJA_1116	SSF64005	Undecaprenyl diphosphate synthase
CJA_1118	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1118	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
CJA_1118	SSF69055	1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
CJA_1119	SSF50156	PDZ domain-like
CJA_1121	SSF111384	OmpH-like
CJA_1122	SSF51161	Trimeric LpxA-like enzymes
CJA_1123	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
CJA_1124	SSF51161	Trimeric LpxA-like enzymes
CJA_1125	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_1126	SSF53098	Ribonuclease H-like
CJA_1127	SSF89550	PHP domain-like
CJA_1128	SSF54631	CBS-domain pair
CJA_1129	SSF52096	ClpP/crotonase
CJA_1131	SSF51395	FMN-linked oxidoreductases
CJA_1132	SSF103473	MFS general substrate transporter
CJA_1133	SSF51556	Metallo-dependent hydrolases
CJA_1134	SSF46785	"Winged helix" DNA-binding domain
CJA_1134	SSF55781	GAF domain-like
CJA_1135	SSF51430	NAD(P)-linked oxidoreductase
CJA_1138	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1139	SSF56529	FAH
CJA_1140	SSF49785	Galactose-binding domain-like
CJA_1140	SSF51445	(Trans)glycosidases
CJA_1140	SSF52266	SGNH hydrolase
CJA_1140	SSF52279	Beta-D-glucan exohydrolase, C-terminal domain
CJA_1142	SSF103088	OmpA-like
CJA_1142	SSF53850	Periplasmic binding protein-like II
CJA_1144	SSF51246	Rudiment single hybrid motif
CJA_1144	SSF52440	PreATP-grasp domain
CJA_1144	SSF56059	Glutathione synthetase ATP-binding domain-like
CJA_1145	SSF52255	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
CJA_1147	SSF46785	"Winged helix" DNA-binding domain
CJA_1147	SSF53850	Periplasmic binding protein-like II
CJA_1148	SSF143631	ApbE-like
CJA_1149	SSF52091	SpoIIaa-like
CJA_1151	SSF54534	FKBP-like
CJA_1153	SSF53850	Periplasmic binding protein-like II
CJA_1154	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1155	SSF50037	C-terminal domain of transcriptional repressors
CJA_1157	SSF56935	Porins
CJA_1159	SSF51905	FAD/NAD(P)-binding domain
CJA_1160	SSF53067	Actin-like ATPase domain
CJA_1161	SSF103473	MFS general substrate transporter
CJA_1163	SSF51338	Composite domain of metallo-dependent hydrolases
CJA_1163	SSF51556	Metallo-dependent hydrolases
CJA_1164	SSF100950	NagB/RpiA/CoA transferase-like
CJA_1165	SSF47413	lambda repressor-like DNA-binding domains
CJA_1165	SSF53822	Periplasmic binding protein-like I
CJA_1166	SSF63829	Calcium-dependent phosphotriesterase
CJA_1167	SSF158757	SMc04008-like
CJA_1168	SSF46565	Chaperone J-domain
CJA_1169	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
CJA_1169	SSF53067	Actin-like ATPase domain
CJA_1171	SSF103088	OmpA-like
CJA_1172	SSF109854	DinB/YfiT-like putative metalloenzymes
CJA_1173	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1174	SSF53300	vWA-like
CJA_1175	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
CJA_1175	SSF88946	Sigma2 domain of RNA polymerase sigma factors
CJA_1176	SSF54001	Cysteine proteinases
CJA_1178	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1179	SSF56300	Metallo-dependent phosphatases
CJA_1180	SSF55073	Nucleotide cyclase
CJA_1182	SSF51445	(Trans)glycosidases
CJA_1182	SSF54556	Chitinase insertion domain
CJA_1183	SSF51556	Metallo-dependent hydrolases
CJA_1184	SSF82649	SufE/NifU
CJA_1185	SSF69572	Activating enzymes of the ubiquitin-like proteins
CJA_1186	SSF46894	C-terminal effector domain of the bipartite response regulators
CJA_1186	SSF52172	CheY-like
CJA_1187	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
CJA_1188	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
CJA_1188	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_1189	SSF141868	EAL domain-like
CJA_1189	SSF52172	CheY-like
CJA_1190	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
CJA_1190	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_1190	SSF52172	CheY-like
CJA_1190	SSF55785	PYP-like sensor domain (PAS domain)
CJA_1190	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_1191	SSF160246	EspE N-terminal domain-like
CJA_1191	SSF49265	Fibronectin type III
CJA_1191	SSF49785	Galactose-binding domain-like
CJA_1192	SSF46785	"Winged helix" DNA-binding domain
CJA_1192	SSF53383	PLP-dependent transferases
CJA_1194	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
CJA_1194	SSF54909	Dimeric alpha+beta barrel
CJA_1196	SSF47473	EF-hand
CJA_1197	SSF56935	Porins
CJA_1198	SSF49503	Cupredoxins
CJA_1199	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
CJA_1200	SSF75169	DsrEFH-like
CJA_1201	SSF46785	"Winged helix" DNA-binding domain
CJA_1201	SSF53850	Periplasmic binding protein-like II
CJA_1203	SSF55073	Nucleotide cyclase
CJA_1208	SSF47413	lambda repressor-like DNA-binding domains
CJA_1211	SSF140931	Fic-like
CJA_1212	SSF47413	lambda repressor-like DNA-binding domains
CJA_1214	SSF47413	lambda repressor-like DNA-binding domains
CJA_1216	SSF48452	TPR-like
CJA_1218	SSF81901	HCP-like
CJA_1226	SSF46689	Homeodomain-like
CJA_1226	SSF53041	Resolvase-like
CJA_1230	SSF46894	C-terminal effector domain of the bipartite response regulators
CJA_1230	SSF75516	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
CJA_1233	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1236	SSF53041	Resolvase-like
CJA_1237	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1238	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1241	SSF53822	Periplasmic binding protein-like I
CJA_1242	SSF46785	"Winged helix" DNA-binding domain
CJA_1242	SSF48008	GntR ligand-binding domain-like
CJA_1243	SSF160467	PH0987 N-terminal domain-like
CJA_1243	SSF50891	Cyclophilin-like
CJA_1243	SSF51230	Single hybrid motif
CJA_1243	SSF51246	Rudiment single hybrid motif
CJA_1243	SSF52440	PreATP-grasp domain
CJA_1243	SSF56059	Glutathione synthetase ATP-binding domain-like
CJA_1244	SSF75304	Amidase signature (AS) enzymes
CJA_1245	SSF140931	Fic-like
CJA_1246	SSF109604	HD-domain/PDEase-like
CJA_1248	SSF49785	Galactose-binding domain-like
CJA_1250	SSF50630	Acid proteases
CJA_1251	SSF56059	Glutathione synthetase ATP-binding domain-like
CJA_1255	SSF46689	Homeodomain-like
CJA_1256	SSF53098	Ribonuclease H-like
CJA_1265	SSF141868	EAL domain-like
CJA_1265	SSF55073	Nucleotide cyclase
CJA_1265	SSF55785	PYP-like sensor domain (PAS domain)
CJA_1266	SSF52091	SpoIIaa-like
CJA_1267	SSF103190	Sensory domain-like
CJA_1268	SSF53850	Periplasmic binding protein-like II
CJA_1269	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1269	SSF54211	Ribosomal protein S5 domain 2-like
CJA_1270	SSF141371	PilZ domain-like
CJA_1271	SSF141371	PilZ domain-like
CJA_1272	SSF53067	Actin-like ATPase domain
CJA_1273	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
CJA_1274	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1277	SSF51126	Pectin lyase-like
CJA_1278	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1279	SSF52218	Flavoproteins
CJA_1282	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_1286	SSF49354	PapD-like
CJA_1289	SSF88713	Glycoside hydrolase/deacetylase
CJA_1291	SSF54631	CBS-domain pair
CJA_1291	SSF56176	FAD-binding/transporter-associated domain-like
CJA_1292	SSF103647	TSP type-3 repeat
CJA_1293	SSF103088	OmpA-like
CJA_1293	SSF56925	OMPA-like
CJA_1294	SSF55486	Metalloproteases ("zincins"), catalytic domain
CJA_1298	SSF56935	Porins
CJA_1301	SSF74653	TolA/TonB C-terminal domain
CJA_1302	SSF51445	(Trans)glycosidases
CJA_1304	SSF51004	C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
CJA_1306	SSF49464	Carboxypeptidase regulatory domain-like
CJA_1306	SSF56935	Porins
CJA_1308	SSF56935	Porins
CJA_1309	SSF53474	alpha/beta-Hydrolases
CJA_1310	SSF53850	Periplasmic binding protein-like II
CJA_1314	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1315	SSF103473	MFS general substrate transporter
CJA_1316	SSF75005	Arabinanase/levansucrase/invertase
CJA_1318	SSF63848	Cell-division inhibitor MinC, C-terminal domain
CJA_1319	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1320	SSF55229	Cell division protein MinE topological specificity domain
CJA_1321	SSF101874	YceI-like
CJA_1322	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1323	SSF102114	Radical SAM enzymes
CJA_1325	SSF52821	Rhodanese/Cell cycle control phosphatase
CJA_1328	SSF55159	eIF1-like
CJA_1329	SSF56601	beta-lactamase/transpeptidase-like
CJA_1331	SSF141868	EAL domain-like
CJA_1331	SSF55073	Nucleotide cyclase
CJA_1331	SSF55785	PYP-like sensor domain (PAS domain)
CJA_1332	SSF48452	TPR-like
CJA_1333	SSF64307	SirA-like
CJA_1334	SSF63411	LuxS/MPP-like metallohydrolase
CJA_1336	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
CJA_1336	SSF52922	TK C-terminal domain-like
CJA_1337	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
CJA_1337	SSF51230	Single hybrid motif
CJA_1337	SSF52777	CoA-dependent acyltransferases
CJA_1340	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_1341	SSF50475	FMN-binding split barrel
CJA_1342	SSF50129	GroES-like
CJA_1342	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1343	SSF89796	CoA-transferase family III (CaiB/BaiF)
CJA_1345	SSF53927	Cytidine deaminase-like
CJA_1346	SSF102405	MCP/YpsA-like
CJA_1347	SSF51445	(Trans)glycosidases
CJA_1348	SSF53697	SIS domain
CJA_1349	SSF143975	IlvD/EDD N-terminal domain-like
CJA_1349	SSF52016	LeuD/IlvD-like
CJA_1350	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1350	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
CJA_1351	SSF100950	NagB/RpiA/CoA transferase-like
CJA_1352	SSF51569	Aldolase
CJA_1353	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1353	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
CJA_1354	SSF50800	PK beta-barrel domain-like
CJA_1354	SSF51621	Phosphoenolpyruvate/pyruvate domain
CJA_1354	SSF52935	PK C-terminal domain-like
CJA_1356	SSF51261	Duplicated hybrid motif
CJA_1357	SSF82185	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
CJA_1358	SSF158997	Trm112p-like
CJA_1359	SSF101353	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
CJA_1359	SSF50447	Translation proteins
CJA_1359	SSF55186	ThrRS/AlaRS common domain
CJA_1359	SSF55681	Class II aaRS and biotin synthetases
CJA_1360	SSF53633	Carbamate kinase-like
CJA_1360	SSF55021	ACT-like
CJA_1361	SSF117130	CsrA-like
CJA_1363	SSF46589	tRNA-binding arm
CJA_1363	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
CJA_1363	SSF50677	ValRS/IleRS/LeuRS editing domain
CJA_1363	SSF52374	Nucleotidylyl transferase
CJA_1365	SSF51445	(Trans)glycosidases
CJA_1365	SSF56112	Protein kinase-like (PK-like)
CJA_1366	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_1367	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_1368	SSF53649	Alkaline phosphatase-like
CJA_1369	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_1371	SSF56281	Metallo-hydrolase/oxidoreductase
CJA_1373	SSF52821	Rhodanese/Cell cycle control phosphatase
CJA_1374	SSF46785	"Winged helix" DNA-binding domain
CJA_1377	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
CJA_1378	SSF54909	Dimeric alpha+beta barrel
CJA_1379	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
CJA_1379	SSF52374	Nucleotidylyl transferase
CJA_1382	SSF55785	PYP-like sensor domain (PAS domain)
CJA_1382	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
CJA_1385	SSF109604	HD-domain/PDEase-like
CJA_1386	SSF51395	FMN-linked oxidoreductases
CJA_1387	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1389	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1391	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_1392	SSF103088	OmpA-like
CJA_1392	SSF56954	Outer membrane efflux proteins (OEP)
CJA_1393	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1393	SSF90123	ABC transporter transmembrane region
CJA_1394	SSF111369	HlyD-like secretion proteins
CJA_1395	SSF46894	C-terminal effector domain of the bipartite response regulators
CJA_1396	SSF49313	Cadherin-like
CJA_1396	SSF51120	beta-Roll
CJA_1398	SSF141868	EAL domain-like
CJA_1398	SSF55073	Nucleotide cyclase
CJA_1399	SSF54001	Cysteine proteinases
CJA_1400	SSF55073	Nucleotide cyclase
CJA_1401	SSF53850	Periplasmic binding protein-like II
CJA_1402	SSF51011	Glycosyl hydrolase domain
CJA_1402	SSF51445	(Trans)glycosidases
CJA_1403	SSF53649	Alkaline phosphatase-like
CJA_1404	SSF50692	ADC-like
CJA_1404	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
CJA_1406	SSF46894	C-terminal effector domain of the bipartite response regulators
CJA_1406	SSF52172	CheY-like
CJA_1407	SSF103190	Sensory domain-like
CJA_1407	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_1407	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_1409	SSF51430	NAD(P)-linked oxidoreductase
CJA_1410	SSF161084	MAPEG domain-like
CJA_1412	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
CJA_1421	SSF53098	Ribonuclease H-like
CJA_1422	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_1423	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_1426	SSF69754	Ribosome binding protein Y (YfiA homologue)
CJA_1427	SSF53098	Ribonuclease H-like
CJA_1428	SSF46689	Homeodomain-like
CJA_1429	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1430	SSF49764	HSP20-like chaperones
CJA_1431	SSF46689	Homeodomain-like
CJA_1431	SSF52317	Class I glutamine amidotransferase-like
CJA_1432	SSF53901	Thiolase-like
CJA_1433	SSF54565	Ribosomal protein S16
CJA_1434	SSF50346	PRC-barrel domain
CJA_1434	SSF50447	Translation proteins
CJA_1435	SSF75217	alpha/beta knot
CJA_1436	SSF50104	Translation proteins SH3-like domain
CJA_1437	SSF56349	DNA breaking-rejoining enzymes
CJA_1438	SSF52833	Thioredoxin-like
CJA_1438	SSF54423	DsbC/DsbG N-terminal domain-like
CJA_1439	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1439	SSF55021	ACT-like
CJA_1439	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
CJA_1440	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
CJA_1441	SSF48452	TPR-like
CJA_1441	SSF52833	Thioredoxin-like
CJA_1443	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1446	SSF103473	MFS general substrate transporter
CJA_1447	SSF102400	DNA polymerase III chi subunit
CJA_1448	SSF52949	Macro domain-like
CJA_1448	SSF53187	Zn-dependent exopeptidases
CJA_1452	SSF49879	SMAD/FHA domain
CJA_1452	SSF55073	Nucleotide cyclase
CJA_1456	SSF111337	QueA-like
CJA_1457	SSF51713	tRNA-guanine transglycosylase
CJA_1458	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
CJA_1459	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
CJA_1461	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_1461	SSF52172	CheY-like
CJA_1461	SSF55785	PYP-like sensor domain (PAS domain)
CJA_1461	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_1462	SSF49384	Carbohydrate-binding domain
CJA_1462	SSF51445	(Trans)glycosidases
CJA_1462	SSF57615	Type X cellulose binding domain, CBDX
CJA_1463	SSF56655	Carbohydrate phosphatase
CJA_1464	SSF75217	alpha/beta knot
CJA_1465	SSF46785	"Winged helix" DNA-binding domain
CJA_1466	SSF53383	PLP-dependent transferases
CJA_1467	SSF101960	Stabilizer of iron transporter SufD
CJA_1468	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1469	SSF101960	Stabilizer of iron transporter SufD
CJA_1470	SSF53383	PLP-dependent transferases
CJA_1471	SSF89360	HesB-like domain
CJA_1472	SSF117916	Fe-S cluster assembly (FSCA) domain-like
CJA_1473	SSF46689	Homeodomain-like
CJA_1473	SSF48498	Tetracyclin repressor-like, C-terminal domain
CJA_1474	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
CJA_1474	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
CJA_1474	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
CJA_1475	SSF111369	HlyD-like secretion proteins
CJA_1476	SSF82649	SufE/NifU
CJA_1477	SSF54919	Nucleoside diphosphate kinase, NDK
CJA_1478	SSF102114	Radical SAM enzymes
CJA_1479	SSF48452	TPR-like
CJA_1480	SSF47413	lambda repressor-like DNA-binding domains
CJA_1481	SSF51717	Dihydropteroate synthetase-like
CJA_1481	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
CJA_1482	SSF52954	Class II aaRS ABD-related
CJA_1482	SSF55681	Class II aaRS and biotin synthetases
CJA_1483	SSF48452	TPR-like
CJA_1484	SSF50998	Quinoprotein alcohol dehydrogenase-like
CJA_1485	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1486	SSF52172	CheY-like
CJA_1487	SSF52091	SpoIIaa-like
CJA_1488	SSF158682	TerB-like
CJA_1489	SSF51569	Aldolase
CJA_1490	SSF51395	FMN-linked oxidoreductases
CJA_1491	SSF55040	Molybdenum cofactor biosynthesis protein C, MoaC
CJA_1492	SSF54285	MoaD/ThiS
CJA_1493	SSF54690	Molybdopterin synthase subunit MoaE
CJA_1494	SSF103473	MFS general substrate transporter
CJA_1495	SSF47413	lambda repressor-like DNA-binding domains
CJA_1495	SSF53822	Periplasmic binding protein-like I
CJA_1496	SSF53067	Actin-like ATPase domain
CJA_1497	SSF51445	(Trans)glycosidases
CJA_1497	SSF52279	Beta-D-glucan exohydrolase, C-terminal domain
CJA_1499	SSF48256	Citrate synthase
CJA_1501	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
CJA_1502	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
CJA_1503	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
CJA_1503	SSF51905	FAD/NAD(P)-binding domain
CJA_1503	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
CJA_1504	SSF46548	alpha-helical ferredoxin
CJA_1504	SSF54292	2Fe-2S ferredoxin-like
CJA_1505	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
CJA_1506	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
CJA_1506	SSF51230	Single hybrid motif
CJA_1506	SSF52777	CoA-dependent acyltransferases
CJA_1507	SSF51905	FAD/NAD(P)-binding domain
CJA_1507	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
CJA_1508	SSF52210	Succinyl-CoA synthetase domains
CJA_1508	SSF56059	Glutathione synthetase ATP-binding domain-like
CJA_1510	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1510	SSF52210	Succinyl-CoA synthetase domains
CJA_1511	SSF50621	Alanine racemase C-terminal domain-like
CJA_1511	SSF51419	PLP-binding barrel
CJA_1512	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1513	SSF50621	Alanine racemase C-terminal domain-like
CJA_1513	SSF51419	PLP-binding barrel
CJA_1515	SSF51230	Single hybrid motif
CJA_1516	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1516	SSF90123	ABC transporter transmembrane region
CJA_1518	SSF50630	Acid proteases
CJA_1519	SSF50630	Acid proteases
CJA_1520	SSF50630	Acid proteases
CJA_1522	SSF51011	Glycosyl hydrolase domain
CJA_1522	SSF51445	(Trans)glycosidases
CJA_1523	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1523	SSF90123	ABC transporter transmembrane region
CJA_1528	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1528	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
CJA_1529	SSF46785	"Winged helix" DNA-binding domain
CJA_1538	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1542	SSF47413	lambda repressor-like DNA-binding domains
CJA_1543	SSF56281	Metallo-hydrolase/oxidoreductase
CJA_1544	SSF53474	alpha/beta-Hydrolases
CJA_1545	SSF46785	"Winged helix" DNA-binding domain
CJA_1545	SSF53850	Periplasmic binding protein-like II
CJA_1546	SSF81442	Cytochrome c oxidase subunit I-like
CJA_1549	SSF46785	"Winged helix" DNA-binding domain
CJA_1550	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1551	SSF141868	EAL domain-like
CJA_1551	SSF55073	Nucleotide cyclase
CJA_1551	SSF55781	GAF domain-like
CJA_1551	SSF55785	PYP-like sensor domain (PAS domain)
CJA_1552	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1554	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
CJA_1555	SSF55073	Nucleotide cyclase
CJA_1559	SSF55469	FMN-dependent nitroreductase-like
CJA_1563	SSF51679	Bacterial luciferase-like
CJA_1567	SSF81301	Nucleotidyltransferase
CJA_1568	SSF47240	Ferritin-like
CJA_1569	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
CJA_1569	SSF51998	PFL-like glycyl radical enzymes
CJA_1570	SSF63829	Calcium-dependent phosphotriesterase
CJA_1571	SSF109604	HD-domain/PDEase-like
CJA_1572	SSF49452	Starch-binding domain-like
CJA_1572	SSF56935	Porins
CJA_1573	SSF49363	Purple acid phosphatase, N-terminal domain
CJA_1573	SSF56300	Metallo-dependent phosphatases
CJA_1574	SSF53850	Periplasmic binding protein-like II
CJA_1575	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1576	SSF88723	PIN domain-like
CJA_1577	SSF140931	Fic-like
CJA_1579	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1580	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_1581	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_1582	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1584	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1587	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1590	SSF161098	MetI-like
CJA_1591	SSF53850	Periplasmic binding protein-like II
CJA_1592	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1595	SSF55073	Nucleotide cyclase
CJA_1596	SSF117396	TM1631-like
CJA_1599	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1600	SSF51197	Clavaminate synthase-like
CJA_1601	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1602	SSF53328	Formyltransferase
CJA_1602	SSF55021	ACT-like
CJA_1603	SSF103473	MFS general substrate transporter
CJA_1605	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_1606	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1606	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
CJA_1607	SSF159594	XCC0632-like
CJA_1609	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1610	SSF52091	SpoIIaa-like
CJA_1611	SSF55120	Pseudouridine synthase
CJA_1613	SSF52980	Restriction endonuclease-like
CJA_1614	SSF64182	DHH phosphoesterases
CJA_1615	SSF52266	SGNH hydrolase
CJA_1616	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1620	SSF51905	FAD/NAD(P)-binding domain
CJA_1622	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_1624	SSF46955	Putative DNA-binding domain
CJA_1625	SSF51283	dUTPase-like
CJA_1627	SSF54534	FKBP-like
CJA_1629	SSF53328	Formyltransferase
CJA_1630	SSF55326	PurM N-terminal domain-like
CJA_1630	SSF56042	PurM C-terminal domain-like
CJA_1632	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1633	SSF48208	Six-hairpin glycosidases
CJA_1633	SSF81296	E set domains
CJA_1634	SSF46689	Homeodomain-like
CJA_1634	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
CJA_1634	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
CJA_1634	SSF57884	Ada DNA repair protein, N-terminal domain (N-Ada 10)
CJA_1635	SSF56317	Carbon-nitrogen hydrolase
CJA_1636	SSF54631	CBS-domain pair
CJA_1636	SSF56176	FAD-binding/transporter-associated domain-like
CJA_1637	SSF55486	Metalloproteases ("zincins"), catalytic domain
CJA_1638	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1640	SSF102114	Radical SAM enzymes
CJA_1641	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1644	SSF53067	Actin-like ATPase domain
CJA_1645	SSF56112	Protein kinase-like (PK-like)
CJA_1645	SSF56436	C-type lectin-like
CJA_1646	SSF81606	PP2C-like
CJA_1648	SSF63411	LuxS/MPP-like metallohydrolase
CJA_1650	SSF82771	GIY-YIG endonuclease
CJA_1651	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_1652	SSF46565	Chaperone J-domain
CJA_1655	SSF55909	Pentein
CJA_1656	SSF56317	Carbon-nitrogen hydrolase
CJA_1657	SSF55073	Nucleotide cyclase
CJA_1658	SSF52833	Thioredoxin-like
CJA_1659	SSF46689	Homeodomain-like
CJA_1661	SSF69721	DsrC, the gamma subunit of dissimilatory sulfite reductase
CJA_1662	SSF75169	DsrEFH-like
CJA_1663	SSF75169	DsrEFH-like
CJA_1664	SSF75169	DsrEFH-like
CJA_1667	SSF50249	Nucleic acid-binding proteins
CJA_1669	SSF55120	Pseudouridine synthase
CJA_1669	SSF55174	Alpha-L RNA-binding motif
CJA_1670	SSF56784	HAD-like
CJA_1671	SSF52972	ITPase-like
CJA_1673	SSF57829	Zn-binding ribosomal proteins
CJA_1674	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
CJA_1675	SSF52151	FabD/lysophospholipase-like
CJA_1675	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
CJA_1676	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1677	SSF47336	ACP-like
CJA_1678	SSF53901	Thiolase-like
CJA_1679	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
CJA_1681	SSF50715	Ribosomal protein L25-like
CJA_1681	SSF52374	Nucleotidylyl transferase
CJA_1682	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
CJA_1682	SSF52374	Nucleotidylyl transferase
CJA_1685	SSF47446	Signal peptide-binding domain
CJA_1685	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1686	SSF111038	YjbQ-like
CJA_1688	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1688	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
CJA_1689	SSF101327	YgfB-like
CJA_1690	SSF142906	YjbR-like
CJA_1691	SSF47413	lambda repressor-like DNA-binding domains
CJA_1691	SSF51182	RmlC-like cupins
CJA_1693	SSF53901	Thiolase-like
CJA_1694	SSF51182	RmlC-like cupins
CJA_1696	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1697	SSF46785	"Winged helix" DNA-binding domain
CJA_1697	SSF51306	LexA/Signal peptidase
CJA_1700	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1701	SSF101116	Flagellar export chaperone FliS
CJA_1703	SSF101116	Flagellar export chaperone FliS
CJA_1704	SSF46689	Homeodomain-like
CJA_1704	SSF52172	CheY-like
CJA_1704	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1705	SSF53098	Ribonuclease H-like
CJA_1706	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1707	SSF103473	MFS general substrate transporter
CJA_1708	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_1708	SSF55785	PYP-like sensor domain (PAS domain)
CJA_1708	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_1709	SSF46689	Homeodomain-like
CJA_1709	SSF52172	CheY-like
CJA_1709	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1714	SSF48029	FliG
CJA_1715	SSF160527	V-type ATPase subunit E-like
CJA_1716	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1718	SSF52091	SpoIIaa-like
CJA_1719	SSF52172	CheY-like
CJA_1719	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_1720	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
CJA_1723	SSF101801	Surface presentation of antigens (SPOA)
CJA_1723	SSF103039	CheC-like
CJA_1724	SSF101801	Surface presentation of antigens (SPOA)
CJA_1729	SSF160544	EscU C-terminal domain-like
CJA_1733	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_1733	SSF52172	CheY-like
CJA_1733	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_1734	SSF56219	DNase I-like
CJA_1735	SSF50156	PDZ domain-like
CJA_1735	SSF52096	ClpP/crotonase
CJA_1736	SSF53850	Periplasmic binding protein-like II
CJA_1740	SSF51569	Aldolase
CJA_1741	SSF52151	FabD/lysophospholipase-like
CJA_1743	SSF46785	"Winged helix" DNA-binding domain
CJA_1743	SSF53850	Periplasmic binding protein-like II
CJA_1744	SSF53732	Aconitase iron-sulfur domain
CJA_1745	SSF52016	LeuD/IlvD-like
CJA_1746	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
CJA_1747	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1747	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
CJA_1749	SSF55120	Pseudouridine synthase
CJA_1750	SSF51366	Ribulose-phoshate binding barrel
CJA_1751	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
CJA_1752	SSF51366	Ribulose-phoshate binding barrel
CJA_1753	SSF52096	ClpP/crotonase
CJA_1754	SSF53244	MurD-like peptide ligases, peptide-binding domain
CJA_1754	SSF53623	MurD-like peptide ligases, catalytic domain
CJA_1755	SSF110997	Sporulation related repeat
CJA_1757	SSF53271	PRTase-like
CJA_1757	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
CJA_1758	SSF53383	PLP-dependent transferases
CJA_1760	SSF110942	HSP90 C-terminal domain
CJA_1760	SSF54211	Ribosomal protein S5 domain 2-like
CJA_1760	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_1761	SSF52335	Methylglyoxal synthase-like
CJA_1762	SSF50249	Nucleic acid-binding proteins
CJA_1764	SSF141259	CarD-like
CJA_1764	SSF143517	TRCF domain-like
CJA_1764	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1770	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
CJA_1770	SSF54292	2Fe-2S ferredoxin-like
CJA_1770	SSF63380	Riboflavin synthase domain-like
CJA_1772	SSF51905	FAD/NAD(P)-binding domain
CJA_1772	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
CJA_1776	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1778	SSF56281	Metallo-hydrolase/oxidoreductase
CJA_1781	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1782	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_1783	SSF52788	Phosphotyrosine protein phosphatases I
CJA_1784	SSF56176	FAD-binding/transporter-associated domain-like
CJA_1784	SSF56194	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
CJA_1785	SSF46894	C-terminal effector domain of the bipartite response regulators
CJA_1785	SSF52172	CheY-like
CJA_1786	SSF46600	C-terminal UvrC-binding domain of UvrB
CJA_1786	SSF47781	RuvA domain 2-like
CJA_1786	SSF82771	GIY-YIG endonuclease
CJA_1790	SSF55315	L30e-like
CJA_1790	SSF75217	alpha/beta knot
CJA_1791	SSF63892	Pyridoxine 5'-phosphate synthase
CJA_1792	SSF50891	Cyclophilin-like
CJA_1794	SSF54909	Dimeric alpha+beta barrel
CJA_1796	SSF89550	PHP domain-like
CJA_1797	SSF55821	YrdC/RibB
CJA_1799	SSF46785	"Winged helix" DNA-binding domain
CJA_1800	SSF55120	Pseudouridine synthase
CJA_1800	SSF55174	Alpha-L RNA-binding motif
CJA_1801	SSF55073	Nucleotide cyclase
CJA_1802	SSF158472	HAMP domain-like
CJA_1802	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_1802	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_1803	SSF46894	C-terminal effector domain of the bipartite response regulators
CJA_1803	SSF52172	CheY-like
CJA_1805	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_1806	SSF52218	Flavoproteins
CJA_1807	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_1808	SSF141868	EAL domain-like
CJA_1808	SSF54631	CBS-domain pair
CJA_1808	SSF55073	Nucleotide cyclase
CJA_1809	SSF48452	TPR-like
CJA_1809	SSF52172	CheY-like
CJA_1810	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_1811	SSF49879	SMAD/FHA domain
CJA_1813	SSF52833	Thioredoxin-like
CJA_1814	SSF109604	HD-domain/PDEase-like
CJA_1814	SSF141868	EAL domain-like
CJA_1815	SSF53098	Ribonuclease H-like
CJA_1818	SSF101262	Methenyltetrahydrofolate cyclohydrolase-like
CJA_1822	SSF57997	Tropomyosin
CJA_1825	SSF49503	Cupredoxins
CJA_1826	SSF103515	Autotransporter
CJA_1828	SSF46626	Cytochrome c
CJA_1829	SSF47240	Ferritin-like
CJA_1829	SSF56784	HAD-like
CJA_1829	SSF81653	Calcium ATPase, transduction domain A
CJA_1829	SSF81665	Calcium ATPase, transmembrane domain M
CJA_1830	SSF111369	HlyD-like secretion proteins
CJA_1831	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
CJA_1831	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
CJA_1831	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
CJA_1835	SSF55008	HMA, heavy metal-associated domain
CJA_1836	SSF55008	HMA, heavy metal-associated domain
CJA_1836	SSF56784	HAD-like
CJA_1836	SSF81653	Calcium ATPase, transduction domain A
CJA_1836	SSF81665	Calcium ATPase, transmembrane domain M
CJA_1837	SSF46955	Putative DNA-binding domain
CJA_1838	SSF46955	Putative DNA-binding domain
CJA_1839	SSF161111	Cation efflux protein transmembrane domain-like
CJA_1841	SSF56954	Outer membrane efflux proteins (OEP)
CJA_1842	SSF111369	HlyD-like secretion proteins
CJA_1843	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
CJA_1843	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
CJA_1843	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
CJA_1844	SSF54913	GlnB-like
CJA_1845	SSF46626	Cytochrome c
CJA_1846	SSF47413	lambda repressor-like DNA-binding domains
CJA_1848	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1849	SSF47823	lambda integrase-like, N-terminal domain
CJA_1849	SSF56349	DNA breaking-rejoining enzymes
CJA_1854	SSF53098	Ribonuclease H-like
CJA_1855	SSF52172	CheY-like
CJA_1856	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_1856	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_1858	SSF48208	Six-hairpin glycosidases
CJA_1860	SSF51197	Clavaminate synthase-like
CJA_1860	SSF55718	SCP-like
CJA_1862	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
CJA_1863	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_1864	SSF51905	FAD/NAD(P)-binding domain
CJA_1865	SSF48056	Di-copper centre-containing domain
CJA_1866	SSF51556	Metallo-dependent hydrolases
CJA_1867	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1867	SSF90123	ABC transporter transmembrane region
CJA_1868	SSF56935	Porins
CJA_1869	SSF53474	alpha/beta-Hydrolases
CJA_1870	SSF47336	ACP-like
CJA_1870	SSF52777	CoA-dependent acyltransferases
CJA_1870	SSF53474	alpha/beta-Hydrolases
CJA_1870	SSF56801	Acetyl-CoA synthetase-like
CJA_1871	SSF47336	ACP-like
CJA_1871	SSF52777	CoA-dependent acyltransferases
CJA_1871	SSF56801	Acetyl-CoA synthetase-like
CJA_1872	SSF51197	Clavaminate synthase-like
CJA_1873	SSF53474	alpha/beta-Hydrolases
CJA_1874	SSF160582	MbtH-like
CJA_1875	SSF53383	PLP-dependent transferases
CJA_1876	SSF56436	C-type lectin-like
CJA_1878	SSF47336	ACP-like
CJA_1878	SSF52777	CoA-dependent acyltransferases
CJA_1878	SSF56801	Acetyl-CoA synthetase-like
CJA_1880	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
CJA_1880	SSF88946	Sigma2 domain of RNA polymerase sigma factors
CJA_1882	SSF51445	(Trans)glycosidases
CJA_1883	SSF88713	Glycoside hydrolase/deacetylase
CJA_1884	SSF51161	Trimeric LpxA-like enzymes
CJA_1884	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_1885	SSF51011	Glycosyl hydrolase domain
CJA_1885	SSF51445	(Trans)glycosidases
CJA_1885	SSF81296	E set domains
CJA_1886	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_1887	SSF53738	Phosphoglucomutase, first 3 domains
CJA_1887	SSF55957	Phosphoglucomutase, C-terminal domain
CJA_1889	SSF51182	RmlC-like cupins
CJA_1890	SSF82784	OsmC-like
CJA_1891	SSF52833	Thioredoxin-like
CJA_1892	SSF54523	Pili subunits
CJA_1893	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_1894	SSF102114	Radical SAM enzymes
CJA_1895	SSF160246	EspE N-terminal domain-like
CJA_1896	SSF53383	PLP-dependent transferases
CJA_1897	SSF109604	HD-domain/PDEase-like
CJA_1897	SSF52172	CheY-like
CJA_1898	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
CJA_1898	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_1898	SSF52172	CheY-like
CJA_1898	SSF55785	PYP-like sensor domain (PAS domain)
CJA_1898	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_1899	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_1899	SSF56436	C-type lectin-like
CJA_1900	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1901	SSF52172	CheY-like
CJA_1902	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1906	SSF51569	Aldolase
CJA_1908	SSF53955	Lysozyme-like
CJA_1909	SSF47781	RuvA domain 2-like
CJA_1909	SSF50249	Nucleic acid-binding proteins
CJA_1909	SSF52113	BRCT domain
CJA_1909	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
CJA_1910	SSF64383	Cell-division protein ZipA, C-terminal domain
CJA_1911	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1911	SSF75553	Smc hinge domain
CJA_1912	SSF48452	TPR-like
CJA_1917	SSF64518	Phase 1 flagellin
CJA_1918	SSF160214	FlaG-like
CJA_1919	SSF64518	Phase 1 flagellin
CJA_1921	SSF64518	Phase 1 flagellin
CJA_1922	SSF64518	Phase 1 flagellin
CJA_1926	SSF117143	Flagellar hook protein flgE
CJA_1927	SSF117143	Flagellar hook protein flgE
CJA_1928	SSF117143	Flagellar hook protein flgE
CJA_1933	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
CJA_1933	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_1934	SSF50341	CheW-like
CJA_1934	SSF52172	CheY-like
CJA_1936	SSF101498	Anti-sigma factor FlgM
CJA_1937	SSF140566	FlgN-like
CJA_1939	SSF75217	alpha/beta knot
CJA_1940	SSF52821	Rhodanese/Cell cycle control phosphatase
CJA_1942	SSF48173	Cryptochrome/photolyase FAD-binding domain
CJA_1942	SSF52425	Cryptochrome/photolyase, N-terminal domain
CJA_1945	SSF46785	"Winged helix" DNA-binding domain
CJA_1945	SSF53850	Periplasmic binding protein-like II
CJA_1947	SSF56317	Carbon-nitrogen hydrolase
CJA_1948	SSF103473	MFS general substrate transporter
CJA_1949	SSF103263	Chorismate synthase, AroC
CJA_1950	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_1951	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
CJA_1952	SSF81606	PP2C-like
CJA_1953	SSF103088	OmpA-like
CJA_1954	SSF53474	alpha/beta-Hydrolases
CJA_1955	SSF53254	Phosphoglycerate mutase-like
CJA_1957	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
CJA_1957	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1958	SSF50475	FMN-binding split barrel
CJA_1963	SSF56935	Porins
CJA_1964	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1964	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
CJA_1965	SSF55120	Pseudouridine synthase
CJA_1966	SSF55120	Pseudouridine synthase
CJA_1966	SSF55174	Alpha-L RNA-binding motif
CJA_1967	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_1969	SSF51182	RmlC-like cupins
CJA_1970	SSF53474	alpha/beta-Hydrolases
CJA_1971	SSF55120	Pseudouridine synthase
CJA_1972	SSF51161	Trimeric LpxA-like enzymes
CJA_1973	SSF51395	FMN-linked oxidoreductases
CJA_1976	SSF54197	HIT-like
CJA_1979	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1981	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1982	SSF74650	Galactose mutarotase-like
CJA_1983	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_1983	SSF56327	LDH C-terminal domain-like
CJA_1984	SSF101386	all-alpha NTP pyrophosphatases
CJA_1985	SSF141868	EAL domain-like
CJA_1985	SSF55073	Nucleotide cyclase
CJA_1985	SSF55785	PYP-like sensor domain (PAS domain)
CJA_1986	SSF51556	Metallo-dependent hydrolases
CJA_1989	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1991	SSF55120	Pseudouridine synthase
CJA_1993	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_1994	SSF50891	Cyclophilin-like
CJA_1995	SSF56300	Metallo-dependent phosphatases
CJA_1997	SSF47240	Ferritin-like
CJA_1999	SSF48208	Six-hairpin glycosidases
CJA_2000	SSF63829	Calcium-dependent phosphotriesterase
CJA_2001	SSF52016	LeuD/IlvD-like
CJA_2001	SSF53732	Aconitase iron-sulfur domain
CJA_2001	SSF74778	Aconitase B, N-terminal domain
CJA_2002	SSF109998	Triger factor/SurA peptide-binding domain-like
CJA_2002	SSF54534	FKBP-like
CJA_2003	SSF47729	IHF-like DNA-binding proteins
CJA_2004	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2004	SSF54211	Ribosomal protein S5 domain 2-like
CJA_2004	SSF88697	PUA domain-like
CJA_2005	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2005	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
CJA_2006	SSF52096	ClpP/crotonase
CJA_2007	SSF102735	Trigger factor ribosome-binding domain
CJA_2007	SSF109998	Triger factor/SurA peptide-binding domain-like
CJA_2007	SSF54534	FKBP-like
CJA_2010	SSF56712	Prokaryotic type I DNA topoisomerase
CJA_2010	SSF57783	Zinc beta-ribbon
CJA_2014	SSF52402	Adenine nucleotide alpha hydrolases-like
CJA_2015	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2017	SSF48435	Bacterial muramidases
CJA_2017	SSF53955	Lysozyme-like
CJA_2018	SSF53098	Ribonuclease H-like
CJA_2020	SSF50891	Cyclophilin-like
CJA_2023	SSF55008	HMA, heavy metal-associated domain
CJA_2024	SSF55008	HMA, heavy metal-associated domain
CJA_2024	SSF56784	HAD-like
CJA_2024	SSF81653	Calcium ATPase, transduction domain A
CJA_2024	SSF81665	Calcium ATPase, transmembrane domain M
CJA_2025	SSF46955	Putative DNA-binding domain
CJA_2026	SSF56954	Outer membrane efflux proteins (OEP)
CJA_2027	SSF49503	Cupredoxins
CJA_2029	SSF51316	Mss4-like
CJA_2029	SSF52833	Thioredoxin-like
CJA_2029	SSF55068	Peptide methionine sulfoxide reductase
CJA_2030	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
CJA_2031	SSF56935	Porins
CJA_2032	SSF53850	Periplasmic binding protein-like II
CJA_2033	SSF46626	Cytochrome c
CJA_2038	SSF56322	ADC synthase
CJA_2039	SSF53474	alpha/beta-Hydrolases
CJA_2040	SSF81853	Family 10 polysaccharide lyase
CJA_2041	SSF56784	HAD-like
CJA_2042	SSF52402	Adenine nucleotide alpha hydrolases-like
CJA_2043	SSF55068	Peptide methionine sulfoxide reductase
CJA_2044	SSF52096	ClpP/crotonase
CJA_2046	SSF55811	Nudix
CJA_2047	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
CJA_2048	SSF53098	Ribonuclease H-like
CJA_2049	SSF53098	Ribonuclease H-like
CJA_2050	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_2052	SSF56281	Metallo-hydrolase/oxidoreductase
CJA_2053	SSF53955	Lysozyme-like
CJA_2053	SSF54106	LysM domain
CJA_2054	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2055	SSF161098	MetI-like
CJA_2056	SSF161098	MetI-like
CJA_2057	SSF53850	Periplasmic binding protein-like II
CJA_2058	SSF53850	Periplasmic binding protein-like II
CJA_2059	SSF55486	Metalloproteases ("zincins"), catalytic domain
CJA_2060	SSF103039	CheC-like
CJA_2061	SSF55073	Nucleotide cyclase
CJA_2061	SSF55785	PYP-like sensor domain (PAS domain)
CJA_2063	SSF52833	Thioredoxin-like
CJA_2065	SSF82093	Heme chaperone CcmE
CJA_2069	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2071	SSF160544	EscU C-terminal domain-like
CJA_2072	SSF141868	EAL domain-like
CJA_2072	SSF55073	Nucleotide cyclase
CJA_2072	SSF55785	PYP-like sensor domain (PAS domain)
CJA_2073	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_2073	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
CJA_2075	SSF52402	Adenine nucleotide alpha hydrolases-like
CJA_2078	SSF55785	PYP-like sensor domain (PAS domain)
CJA_2078	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
CJA_2079	SSF53383	PLP-dependent transferases
CJA_2080	SSF52374	Nucleotidylyl transferase
CJA_2081	SSF51206	cAMP-binding domain-like
CJA_2081	SSF52821	Rhodanese/Cell cycle control phosphatase
CJA_2082	SSF101821	Aminopeptidase/glucanase lid domain
CJA_2082	SSF53187	Zn-dependent exopeptidases
CJA_2083	SSF53067	Actin-like ATPase domain
CJA_2084	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2085	SSF46785	"Winged helix" DNA-binding domain
CJA_2085	SSF54909	Dimeric alpha+beta barrel
CJA_2086	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
CJA_2087	SSF53720	ALDH-like
CJA_2088	SSF116726	TrkA C-terminal domain-like
CJA_2088	SSF56176	FAD-binding/transporter-associated domain-like
CJA_2089	SSF50249	Nucleic acid-binding proteins
CJA_2090	SSF88697	PUA domain-like
CJA_2101	SSF69318	Integrin alpha N-terminal domain
CJA_2102	SSF53187	Zn-dependent exopeptidases
CJA_2103	SSF52317	Class I glutamine amidotransferase-like
CJA_2103	SSF52402	Adenine nucleotide alpha hydrolases-like
CJA_2103	SSF54810	GMP synthetase C-terminal dimerisation domain
CJA_2104	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
CJA_2104	SSF54631	CBS-domain pair
CJA_2106	SSF51905	FAD/NAD(P)-binding domain
CJA_2106	SSF54373	FAD-linked reductases, C-terminal domain
CJA_2107	SSF54285	MoaD/ThiS
CJA_2108	SSF110399	ThiG-like
CJA_2110	SSF109604	HD-domain/PDEase-like
CJA_2112	SSF111352	Ammonium transporter
CJA_2113	SSF47729	IHF-like DNA-binding proteins
CJA_2114	SSF50249	Nucleic acid-binding proteins
CJA_2115	SSF51182	RmlC-like cupins
CJA_2115	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_2116	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_2117	SSF53738	Phosphoglucomutase, first 3 domains
CJA_2117	SSF55957	Phosphoglucomutase, C-terminal domain
CJA_2118	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2119	SSF51366	Ribulose-phoshate binding barrel
CJA_2120	SSF47781	RuvA domain 2-like
CJA_2121	SSF50447	Translation proteins
CJA_2121	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
CJA_2121	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2122	SSF52402	Adenine nucleotide alpha hydrolases-like
CJA_2123	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
CJA_2123	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_2124	SSF48600	Chorismate mutase II
CJA_2124	SSF53850	Periplasmic binding protein-like II
CJA_2124	SSF55021	ACT-like
CJA_2125	SSF101904	GyrA/ParC C-terminal domain-like
CJA_2125	SSF56719	Type II DNA topoisomerase
CJA_2127	SSF51338	Composite domain of metallo-dependent hydrolases
CJA_2127	SSF51556	Metallo-dependent hydrolases
CJA_2128	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_2129	SSF56784	HAD-like
CJA_2130	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_2132	SSF50341	CheW-like
CJA_2133	SSF50341	CheW-like
CJA_2134	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2135	SSF103088	OmpA-like
CJA_2137	SSF52172	CheY-like
CJA_2137	SSF52738	Methylesterase CheB, C-terminal domain
CJA_2138	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
CJA_2138	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_2138	SSF50341	CheW-like
CJA_2138	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_2139	SSF75708	Chemotaxis phosphatase CheZ
CJA_2140	SSF52172	CheY-like
CJA_2141	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
CJA_2141	SSF88946	Sigma2 domain of RNA polymerase sigma factors
CJA_2142	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2143	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2147	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_2149	SSF50104	Translation proteins SH3-like domain
CJA_2149	SSF50249	Nucleic acid-binding proteins
CJA_2150	SSF55811	Nudix
CJA_2152	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_2152	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
CJA_2153	SSF50249	Nucleic acid-binding proteins
CJA_2156	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_2158	SSF51395	FMN-linked oxidoreductases
CJA_2160	SSF51445	(Trans)glycosidases
CJA_2160	SSF81296	E set domains
CJA_2161	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_2161	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
CJA_2162	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2163	SSF53300	vWA-like
CJA_2165	SSF53300	vWA-like
CJA_2166	SSF48452	TPR-like
CJA_2166	SSF53300	vWA-like
CJA_2170	SSF55486	Metalloproteases ("zincins"), catalytic domain
CJA_2170	SSF63737	Leukotriene A4 hydrolase N-terminal domain
CJA_2172	SSF144091	Rhomboid-like
CJA_2173	SSF56300	Metallo-dependent phosphatases
CJA_2174	SSF111331	NAD kinase/diacylglycerol kinase-like
CJA_2176	SSF51206	cAMP-binding domain-like
CJA_2176	SSF52821	Rhodanese/Cell cycle control phosphatase
CJA_2178	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
CJA_2184	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_2184	SSF55785	PYP-like sensor domain (PAS domain)
CJA_2184	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_2186	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_2187	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_2190	SSF53681	Aspartate/glutamate racemase
CJA_2191	SSF51055	Carbohydrate binding domain
CJA_2191	SSF81296	E set domains
CJA_2192	SSF103473	MFS general substrate transporter
CJA_2193	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2194	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2194	SSF52980	Restriction endonuclease-like
CJA_2195	SSF50249	Nucleic acid-binding proteins
CJA_2196	SSF46785	"Winged helix" DNA-binding domain
CJA_2196	SSF51206	cAMP-binding domain-like
CJA_2201	SSF52821	Rhodanese/Cell cycle control phosphatase
CJA_2203	SSF82657	BolA-like
CJA_2204	SSF54211	Ribosomal protein S5 domain 2-like
CJA_2204	SSF55060	GHMP Kinase, C-terminal domain
CJA_2205	SSF54197	HIT-like
CJA_2207	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
CJA_2208	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_2209	SSF75620	Release factor
CJA_2212	SSF89069	N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
CJA_2213	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
CJA_2213	SSF88946	Sigma2 domain of RNA polymerase sigma factors
CJA_2214	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
CJA_2214	SSF51905	FAD/NAD(P)-binding domain
CJA_2214	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
CJA_2215	SSF109910	YgfY-like
CJA_2216	SSF101790	Aminomethyltransferase beta-barrel domain
CJA_2216	SSF103025	Folate-binding domain
CJA_2217	SSF109604	HD-domain/PDEase-like
CJA_2218	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
CJA_2218	SSF88946	Sigma2 domain of RNA polymerase sigma factors
CJA_2219	SSF51261	Duplicated hybrid motif
CJA_2220	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_2221	SSF55120	Pseudouridine synthase
CJA_2222	SSF69765	IpsF-like
CJA_2223	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_2225	SSF51604	Enolase C-terminal domain-like
CJA_2225	SSF54826	Enolase N-terminal domain-like
CJA_2226	SSF51569	Aldolase
CJA_2227	SSF52317	Class I glutamine amidotransferase-like
CJA_2227	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2230	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2230	SSF54752	RecA protein, C-terminal domain
CJA_2231	SSF142433	CinA-like
CJA_2234	SSF53383	PLP-dependent transferases
CJA_2236	SSF47413	lambda repressor-like DNA-binding domains
CJA_2237	SSF51161	Trimeric LpxA-like enzymes
CJA_2238	SSF52821	Rhodanese/Cell cycle control phosphatase
CJA_2239	SSF141868	EAL domain-like
CJA_2240	SSF50331	MOP-like
CJA_2240	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2241	SSF161098	MetI-like
CJA_2242	SSF161098	MetI-like
CJA_2243	SSF53850	Periplasmic binding protein-like II
CJA_2246	SSF56935	Porins
CJA_2247	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2247	SSF90123	ABC transporter transmembrane region
CJA_2248	SSF55469	FMN-dependent nitroreductase-like
CJA_2249	SSF53850	Periplasmic binding protein-like II
CJA_2250	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2251	SSF161098	MetI-like
CJA_2252	SSF161098	MetI-like
CJA_2253	SSF46785	"Winged helix" DNA-binding domain
CJA_2253	SSF64288	Chorismate lyase-like
CJA_2254	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
CJA_2254	SSF51905	FAD/NAD(P)-binding domain
CJA_2255	SSF54862	4Fe-4S ferredoxins
CJA_2256	SSF160387	NosL/MerB-like
CJA_2256	SSF53850	Periplasmic binding protein-like II
CJA_2257	SSF161098	MetI-like
CJA_2258	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2259	SSF48371	ARM repeat
CJA_2261	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_2262	SSF56112	Protein kinase-like (PK-like)
CJA_2262	SSF81606	PP2C-like
CJA_2264	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2265	SSF53850	Periplasmic binding protein-like II
CJA_2266	SSF51679	Bacterial luciferase-like
CJA_2267	SSF56935	Porins
CJA_2270	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
CJA_2270	SSF56645	Acyl-CoA dehydrogenase NM domain-like
CJA_2271	SSF51679	Bacterial luciferase-like
CJA_2272	SSF56935	Porins
CJA_2273	SSF56935	Porins
CJA_2275	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
CJA_2276	SSF50998	Quinoprotein alcohol dehydrogenase-like
CJA_2277	SSF46894	C-terminal effector domain of the bipartite response regulators
CJA_2277	SSF48452	TPR-like
CJA_2278	SSF55248	PCD-like
CJA_2280	SSF53383	PLP-dependent transferases
CJA_2281	SSF52172	CheY-like
CJA_2283	SSF52833	Thioredoxin-like
CJA_2284	SSF52218	Flavoproteins
CJA_2286	SSF52096	ClpP/crotonase
CJA_2287	SSF56935	Porins
CJA_2290	SSF161098	MetI-like
CJA_2291	SSF53850	Periplasmic binding protein-like II
CJA_2292	SSF56935	Porins
CJA_2294	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
CJA_2294	SSF88946	Sigma2 domain of RNA polymerase sigma factors
CJA_2295	SSF56935	Porins
CJA_2297	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
CJA_2297	SSF88946	Sigma2 domain of RNA polymerase sigma factors
CJA_2298	SSF56935	Porins
CJA_2300	SSF48557	L-aspartase-like
CJA_2301	SSF56935	Porins
CJA_2302	SSF46785	"Winged helix" DNA-binding domain
CJA_2302	SSF53850	Periplasmic binding protein-like II
CJA_2303	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_2304	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_2305	SSF53474	alpha/beta-Hydrolases
CJA_2312	SSF56935	Porins
CJA_2313	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2313	SSF90123	ABC transporter transmembrane region
CJA_2314	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2314	SSF90123	ABC transporter transmembrane region
CJA_2315	SSF51679	Bacterial luciferase-like
CJA_2316	SSF53639	AraD/HMP-PK domain-like
CJA_2317	SSF53850	Periplasmic binding protein-like II
CJA_2319	SSF111369	HlyD-like secretion proteins
CJA_2321	SSF161098	MetI-like
CJA_2322	SSF51679	Bacterial luciferase-like
CJA_2323	SSF161098	MetI-like
CJA_2324	SSF53850	Periplasmic binding protein-like II
CJA_2327	SSF74653	TolA/TonB C-terminal domain
CJA_2331	SSF53850	Periplasmic binding protein-like II
CJA_2332	SSF46689	Homeodomain-like
CJA_2332	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2333	SSF56935	Porins
CJA_2334	SSF53850	Periplasmic binding protein-like II
CJA_2335	SSF51679	Bacterial luciferase-like
CJA_2336	SSF51679	Bacterial luciferase-like
CJA_2337	SSF53850	Periplasmic binding protein-like II
CJA_2340	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2340	SSF90123	ABC transporter transmembrane region
CJA_2341	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2341	SSF90123	ABC transporter transmembrane region
CJA_2342	SSF50331	MOP-like
CJA_2343	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2344	SSF52218	Flavoproteins
CJA_2345	SSF52821	Rhodanese/Cell cycle control phosphatase
CJA_2347	SSF161098	MetI-like
CJA_2348	SSF161098	MetI-like
CJA_2349	SSF53850	Periplasmic binding protein-like II
CJA_2350	SSF103473	MFS general substrate transporter
CJA_2352	SSF52833	Thioredoxin-like
CJA_2356	SSF48334	DNA repair protein MutS, domain III
CJA_2356	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2356	SSF53150	DNA repair protein MutS, domain II
CJA_2356	SSF55271	DNA repair protein MutS, domain I
CJA_2357	SSF54862	4Fe-4S ferredoxins
CJA_2358	SSF141371	PilZ domain-like
CJA_2361	SSF56935	Porins
CJA_2364	SSF56935	Porins
CJA_2366	SSF51658	Xylose isomerase-like
CJA_2367	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2368	SSF49899	Concanavalin A-like lectins/glucanases
CJA_2369	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
CJA_2369	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
CJA_2369	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
CJA_2370	SSF111369	HlyD-like secretion proteins
CJA_2372	SSF51316	Mss4-like
CJA_2373	SSF53383	PLP-dependent transferases
CJA_2374	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_2375	SSF111331	NAD kinase/diacylglycerol kinase-like
CJA_2376	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_2376	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
CJA_2379	SSF64307	SirA-like
CJA_2381	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_2382	SSF118001	YehU-like
CJA_2383	SSF55021	ACT-like
CJA_2385	SSF56988	Anthrax protective antigen
CJA_2387	SSF54523	Pili subunits
CJA_2389	SSF54523	Pili subunits
CJA_2390	SSF54523	Pili subunits
CJA_2394	SSF160246	EspE N-terminal domain-like
CJA_2394	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2395	SSF48452	TPR-like
CJA_2396	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2401	SSF53067	Actin-like ATPase domain
CJA_2402	SSF75217	alpha/beta knot
CJA_2403	SSF52218	Flavoproteins
CJA_2404	SSF52218	Flavoproteins
CJA_2405	SSF51905	FAD/NAD(P)-binding domain
CJA_2405	SSF54373	FAD-linked reductases, C-terminal domain
CJA_2408	SSF50969	YVTN repeat-like/Quinoprotein amine dehydrogenase
CJA_2409	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_2410	SSF52096	ClpP/crotonase
CJA_2411	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
CJA_2411	SSF52374	Nucleotidylyl transferase
CJA_2411	SSF55190	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
CJA_2413	SSF51126	Pectin lyase-like
CJA_2414	SSF110296	Oligoxyloglucan reducing end-specific cellobiohydrolase
CJA_2414	SSF50939	Sialidases
CJA_2414	SSF50978	WD40 repeat-like
CJA_2415	SSF52266	SGNH hydrolase
CJA_2416	SSF158452	YqcC-like
CJA_2417	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2418	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
CJA_2419	SSF53671	Aspartate/ornithine carbamoyltransferase
CJA_2420	SSF52172	CheY-like
CJA_2420	SSF55073	Nucleotide cyclase
CJA_2421	SSF51905	FAD/NAD(P)-binding domain
CJA_2421	SSF54373	FAD-linked reductases, C-terminal domain
CJA_2422	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_2424	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_2424	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
CJA_2425	SSF46600	C-terminal UvrC-binding domain of UvrB
CJA_2425	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2426	SSF46785	"Winged helix" DNA-binding domain
CJA_2426	SSF53850	Periplasmic binding protein-like II
CJA_2428	SSF52218	Flavoproteins
CJA_2429	SSF51182	RmlC-like cupins
CJA_2430	SSF52218	Flavoproteins
CJA_2431	SSF53098	Ribonuclease H-like
CJA_2432	SSF47240	Ferritin-like
CJA_2433	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_2434	SSF53300	vWA-like
CJA_2437	SSF160191	YcgL-like
CJA_2438	SSF47819	HRDC-like
CJA_2438	SSF53098	Ribonuclease H-like
CJA_2439	SSF111304	Recombination protein RecR
CJA_2440	SSF82607	YbaB-like
CJA_2441	SSF48019	post-AAA+ oligomerization domain-like
CJA_2441	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2443	SSF52833	Thioredoxin-like
CJA_2444	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_2444	SSF55785	PYP-like sensor domain (PAS domain)
CJA_2444	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_2445	SSF52172	CheY-like
CJA_2446	SSF46785	"Winged helix" DNA-binding domain
CJA_2446	SSF53850	Periplasmic binding protein-like II
CJA_2447	SSF141868	EAL domain-like
CJA_2447	SSF52172	CheY-like
CJA_2447	SSF55073	Nucleotide cyclase
CJA_2447	SSF55785	PYP-like sensor domain (PAS domain)
CJA_2448	SSF51726	UROD/MetE-like
CJA_2451	SSF143430	TTP0101/SSO1404-like
CJA_2457	SSF109604	HD-domain/PDEase-like
CJA_2457	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2459	SSF56935	Porins
CJA_2460	SSF141868	EAL domain-like
CJA_2460	SSF52172	CheY-like
CJA_2460	SSF55073	Nucleotide cyclase
CJA_2460	SSF55785	PYP-like sensor domain (PAS domain)
CJA_2461	SSF158472	HAMP domain-like
CJA_2461	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
CJA_2461	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_2461	SSF52172	CheY-like
CJA_2461	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_2463	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
CJA_2465	SSF47729	IHF-like DNA-binding proteins
CJA_2466	SSF54197	HIT-like
CJA_2467	SSF52954	Class II aaRS ABD-related
CJA_2467	SSF55681	Class II aaRS and biotin synthetases
CJA_2467	SSF55826	YbaK/ProRS associated domain
CJA_2469	SSF49384	Carbohydrate-binding domain
CJA_2471	SSF49384	Carbohydrate-binding domain
CJA_2471	SSF51445	(Trans)glycosidases
CJA_2471	SSF57615	Type X cellulose binding domain, CBDX
CJA_2472	SSF48208	Six-hairpin glycosidases
CJA_2472	SSF49299	PKD domain
CJA_2472	SSF49384	Carbohydrate-binding domain
CJA_2472	SSF57615	Type X cellulose binding domain, CBDX
CJA_2472	SSF81296	E set domains
CJA_2473	SSF49384	Carbohydrate-binding domain
CJA_2473	SSF51989	Glycosyl hydrolases family 6, cellulases
CJA_2473	SSF57615	Type X cellulose binding domain, CBDX
CJA_2475	SSF49384	Carbohydrate-binding domain
CJA_2475	SSF51445	(Trans)glycosidases
CJA_2475	SSF57615	Type X cellulose binding domain, CBDX
CJA_2477	SSF110296	Oligoxyloglucan reducing end-specific cellobiohydrolase
CJA_2477	SSF49384	Carbohydrate-binding domain
CJA_2477	SSF57615	Type X cellulose binding domain, CBDX
CJA_2478	SSF50249	Nucleic acid-binding proteins
CJA_2478	SSF55681	Class II aaRS and biotin synthetases
CJA_2479	SSF75620	Release factor
CJA_2480	SSF51445	(Trans)glycosidases
CJA_2480	SSF57615	Type X cellulose binding domain, CBDX
CJA_2481	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2482	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
CJA_2482	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
CJA_2482	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
CJA_2483	SSF111369	HlyD-like secretion proteins
CJA_2484	SSF55811	Nudix
CJA_2485	SSF51905	FAD/NAD(P)-binding domain
CJA_2486	SSF48452	TPR-like
CJA_2486	SSF52266	SGNH hydrolase
CJA_2487	SSF53067	Actin-like ATPase domain
CJA_2490	SSF52402	Adenine nucleotide alpha hydrolases-like
CJA_2491	SSF101322	YcfC-like
CJA_2492	SSF48557	L-aspartase-like
CJA_2493	SSF51197	Clavaminate synthase-like
CJA_2494	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_2498	SSF49899	Concanavalin A-like lectins/glucanases
CJA_2502	SSF49373	Invasin/intimin cell-adhesion fragments
CJA_2502	SSF49899	Concanavalin A-like lectins/glucanases
CJA_2512	SSF53098	Ribonuclease H-like
CJA_2517	SSF103647	TSP type-3 repeat
CJA_2518	SSF109998	Triger factor/SurA peptide-binding domain-like
CJA_2519	SSF109998	Triger factor/SurA peptide-binding domain-like
CJA_2519	SSF54534	FKBP-like
CJA_2520	SSF50952	Soluble quinoprotein glucose dehydrogenase
CJA_2520	SSF50969	YVTN repeat-like/Quinoprotein amine dehydrogenase
CJA_2520	SSF50985	RCC1/BLIP-II
CJA_2520	SSF50998	Quinoprotein alcohol dehydrogenase-like
CJA_2520	SSF63825	YWTD domain
CJA_2520	SSF81296	E set domains
CJA_2521	SSF56935	Porins
CJA_2523	SSF46955	Putative DNA-binding domain
CJA_2524	SSF47729	IHF-like DNA-binding proteins
CJA_2525	SSF46955	Putative DNA-binding domain
CJA_2525	SSF50249	Nucleic acid-binding proteins
CJA_2525	SSF54991	Anticodon-binding domain of PheRS
CJA_2525	SSF55681	Class II aaRS and biotin synthetases
CJA_2525	SSF56037	PheT/TilS domain
CJA_2526	SSF46589	tRNA-binding arm
CJA_2526	SSF55681	Class II aaRS and biotin synthetases
CJA_2527	SSF74731	Ribosomal protein L20
CJA_2528	SSF143034	L35p-like
CJA_2529	SSF54364	Translation initiation factor IF3, N-terminal domain
CJA_2529	SSF55200	Translation initiation factor IF3, C-terminal domain
CJA_2530	SSF52954	Class II aaRS ABD-related
CJA_2530	SSF55186	ThrRS/AlaRS common domain
CJA_2530	SSF55681	Class II aaRS and biotin synthetases
CJA_2530	SSF81271	TGS-like
CJA_2531	SSF52218	Flavoproteins
CJA_2531	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
CJA_2531	SSF63380	Riboflavin synthase domain-like
CJA_2532	SSF56954	Outer membrane efflux proteins (OEP)
CJA_2533	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2534	SSF111369	HlyD-like secretion proteins
CJA_2535	SSF52218	Flavoproteins
CJA_2535	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
CJA_2535	SSF63380	Riboflavin synthase domain-like
CJA_2539	SSF56935	Porins
CJA_2540	SSF53850	Periplasmic binding protein-like II
CJA_2541	SSF117916	Fe-S cluster assembly (FSCA) domain-like
CJA_2541	SSF89360	HesB-like domain
CJA_2542	SSF47644	Methionine synthase domain
CJA_2542	SSF51717	Dihydropteroate synthetase-like
CJA_2542	SSF52242	Cobalamin (vitamin B12)-binding domain
CJA_2542	SSF56507	Methionine synthase activation domain-like
CJA_2542	SSF82282	Homocysteine S-methyltransferase
CJA_2545	SSF47413	lambda repressor-like DNA-binding domains
CJA_2549	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2551	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_2551	SSF53790	Tetrapyrrole methylase
CJA_2551	SSF75615	Siroheme synthase middle domains-like
CJA_2552	SSF46589	tRNA-binding arm
CJA_2552	SSF55681	Class II aaRS and biotin synthetases
CJA_2554	SSF48019	post-AAA+ oligomerization domain-like
CJA_2554	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2555	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
CJA_2556	SSF46785	"Winged helix" DNA-binding domain
CJA_2556	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2558	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_2558	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_2559	SSF52172	CheY-like
CJA_2560	SSF141868	EAL domain-like
CJA_2560	SSF52172	CheY-like
CJA_2560	SSF55073	Nucleotide cyclase
CJA_2561	SSF51905	FAD/NAD(P)-binding domain
CJA_2564	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2565	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_2566	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_2567	SSF50249	Nucleic acid-binding proteins
CJA_2568	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2568	SSF81923	Double Clp-N motif
CJA_2569	SSF54736	ClpS-like
CJA_2570	SSF50249	Nucleic acid-binding proteins
CJA_2571	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
CJA_2572	SSF55120	Pseudouridine synthase
CJA_2573	SSF109604	HD-domain/PDEase-like
CJA_2574	SSF101386	all-alpha NTP pyrophosphatases
CJA_2575	SSF109604	HD-domain/PDEase-like
CJA_2575	SSF55021	ACT-like
CJA_2575	SSF81271	TGS-like
CJA_2575	SSF81301	Nucleotidyltransferase
CJA_2576	SSF50249	Nucleic acid-binding proteins
CJA_2576	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_2577	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
CJA_2578	SSF50249	Nucleic acid-binding proteins
CJA_2578	SSF57863	ArfGap/RecO-like zinc finger
CJA_2579	SSF158472	HAMP domain-like
CJA_2579	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
CJA_2579	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_2579	SSF52172	CheY-like
CJA_2579	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_2580	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2580	SSF54814	Prokaryotic type KH domain (KH-domain type II)
CJA_2581	SSF54768	dsRNA-binding domain-like
CJA_2581	SSF69065	RNase III domain-like
CJA_2583	SSF51306	LexA/Signal peptidase
CJA_2584	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2584	SSF54980	EF-G C-terminal domain-like
CJA_2585	SSF50156	PDZ domain-like
CJA_2585	SSF50494	Trypsin-like serine proteases
CJA_2588	SSF103088	OmpA-like
CJA_2589	SSF51556	Metallo-dependent hydrolases
CJA_2590	SSF53098	Ribonuclease H-like
CJA_2591	SSF142906	YjbR-like
CJA_2592	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
CJA_2593	SSF52402	Adenine nucleotide alpha hydrolases-like
CJA_2596	SSF109736	FGAM synthase PurL, linker domain
CJA_2596	SSF52317	Class I glutamine amidotransferase-like
CJA_2596	SSF55326	PurM N-terminal domain-like
CJA_2596	SSF56042	PurM C-terminal domain-like
CJA_2596	SSF82697	PurS-like
CJA_2597	SSF53850	Periplasmic binding protein-like II
CJA_2597	SSF53955	Lysozyme-like
CJA_2598	SSF109604	HD-domain/PDEase-like
CJA_2598	SSF53850	Periplasmic binding protein-like II
CJA_2599	SSF46548	alpha-helical ferredoxin
CJA_2599	SSF55103	FAD-linked oxidases, C-terminal domain
CJA_2599	SSF56176	FAD-binding/transporter-associated domain-like
CJA_2601	SSF46785	"Winged helix" DNA-binding domain
CJA_2601	SSF48008	GntR ligand-binding domain-like
CJA_2604	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
CJA_2604	SSF63380	Riboflavin synthase domain-like
CJA_2605	SSF52402	Adenine nucleotide alpha hydrolases-like
CJA_2605	SSF52467	DHS-like NAD/FAD-binding domain
CJA_2606	SSF52402	Adenine nucleotide alpha hydrolases-like
CJA_2607	SSF46785	"Winged helix" DNA-binding domain
CJA_2607	SSF53850	Periplasmic binding protein-like II
CJA_2608	SSF51905	FAD/NAD(P)-binding domain
CJA_2608	SSF54373	FAD-linked reductases, C-terminal domain
CJA_2608	SSF54862	4Fe-4S ferredoxins
CJA_2610	SSF49303	beta-Galactosidase/glucuronidase domain
CJA_2610	SSF49785	Galactose-binding domain-like
CJA_2610	SSF51445	(Trans)glycosidases
CJA_2611	SSF51055	Carbohydrate binding domain
CJA_2611	SSF51445	(Trans)glycosidases
CJA_2611	SSF54556	Chitinase insertion domain
CJA_2612	SSF158682	TerB-like
CJA_2612	SSF46565	Chaperone J-domain
CJA_2615	SSF101874	YceI-like
CJA_2615	SSF49384	Carbohydrate-binding domain
CJA_2616	SSF101874	YceI-like
CJA_2616	SSF46626	Cytochrome c
CJA_2616	SSF49265	Fibronectin type III
CJA_2616	SSF49384	Carbohydrate-binding domain
CJA_2618	SSF51445	(Trans)glycosidases
CJA_2623	SSF49265	Fibronectin type III
CJA_2623	SSF69318	Integrin alpha N-terminal domain
CJA_2624	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
CJA_2628	SSF55008	HMA, heavy metal-associated domain
CJA_2628	SSF56784	HAD-like
CJA_2628	SSF81653	Calcium ATPase, transduction domain A
CJA_2628	SSF81665	Calcium ATPase, transmembrane domain M
CJA_2630	SSF54862	4Fe-4S ferredoxins
CJA_2631	SSF46626	Cytochrome c
CJA_2633	SSF46626	Cytochrome c
CJA_2634	SSF81442	Cytochrome c oxidase subunit I-like
CJA_2635	SSF52402	Adenine nucleotide alpha hydrolases-like
CJA_2635	SSF69864	Argininosuccinate synthetase, C-terminal domain
CJA_2636	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
CJA_2637	SSF53098	Ribonuclease H-like
CJA_2638	SSF53056	beta-carbonic anhydrase, cab
CJA_2639	SSF55781	GAF domain-like
CJA_2639	SSF55785	PYP-like sensor domain (PAS domain)
CJA_2640	SSF52172	CheY-like
CJA_2641	SSF52091	SpoIIaa-like
CJA_2642	SSF117457	FumA C-terminal domain-like
CJA_2645	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
CJA_2645	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
CJA_2646	SSF48592	GroEL equatorial domain-like
CJA_2646	SSF52029	GroEL apical domain-like
CJA_2646	SSF54849	GroEL-intermediate domain like
CJA_2647	SSF50129	GroES-like
CJA_2650	SSF103473	MFS general substrate transporter
CJA_2651	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
CJA_2652	SSF89963	YajQ-like
CJA_2654	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
CJA_2655	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2656	SSF47240	Ferritin-like
CJA_2657	SSF49785	Galactose-binding domain-like
CJA_2657	SSF50952	Soluble quinoprotein glucose dehydrogenase
CJA_2657	SSF52317	Class I glutamine amidotransferase-like
CJA_2658	SSF82784	OsmC-like
CJA_2659	SSF46785	"Winged helix" DNA-binding domain
CJA_2659	SSF51206	cAMP-binding domain-like
CJA_2660	SSF51366	Ribulose-phoshate binding barrel
CJA_2661	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
CJA_2661	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
CJA_2662	SSF52317	Class I glutamine amidotransferase-like
CJA_2663	SSF56322	ADC synthase
CJA_2664	SSF55315	L30e-like
CJA_2664	SSF75217	alpha/beta knot
CJA_2665	SSF51905	FAD/NAD(P)-binding domain
CJA_2666	SSF51366	Ribulose-phoshate binding barrel
CJA_2671	SSF51351	Triosephosphate isomerase (TIM)
CJA_2672	SSF53738	Phosphoglucomutase, first 3 domains
CJA_2672	SSF55957	Phosphoglucomutase, C-terminal domain
CJA_2673	SSF51717	Dihydropteroate synthetase-like
CJA_2674	SSF140990	FtsH protease domain-like
CJA_2674	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2675	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_2676	SSF75471	YhbY-like
CJA_2677	SSF48452	TPR-like
CJA_2678	SSF49299	PKD domain
CJA_2679	SSF56935	Porins
CJA_2681	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
CJA_2681	SSF88946	Sigma2 domain of RNA polymerase sigma factors
CJA_2682	SSF48613	Heme oxygenase-like
CJA_2684	SSF74653	TolA/TonB C-terminal domain
CJA_2685	SSF46557	GreA transcript cleavage protein, N-terminal domain
CJA_2685	SSF54534	FKBP-like
CJA_2686	SSF48108	Carbamoyl phosphate synthetase, large subunit connection domain
CJA_2686	SSF52335	Methylglyoxal synthase-like
CJA_2686	SSF52440	PreATP-grasp domain
CJA_2686	SSF56059	Glutathione synthetase ATP-binding domain-like
CJA_2687	SSF52021	Carbamoyl phosphate synthetase, small subunit N-terminal domain
CJA_2687	SSF52317	Class I glutamine amidotransferase-like
CJA_2688	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_2688	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
CJA_2689	SSF142695	RibA-like
CJA_2690	SSF50630	Acid proteases
CJA_2691	SSF101307	YutG-like
CJA_2692	SSF55326	PurM N-terminal domain-like
CJA_2692	SSF56042	PurM C-terminal domain-like
CJA_2693	SSF48013	NusB-like
CJA_2694	SSF52121	Lumazine synthase
CJA_2695	SSF142695	RibA-like
CJA_2695	SSF55821	YrdC/RibB
CJA_2696	SSF63380	Riboflavin synthase domain-like
CJA_2698	SSF53597	Dihydrofolate reductase-like
CJA_2698	SSF53927	Cytidine deaminase-like
CJA_2700	SSF53850	Periplasmic binding protein-like II
CJA_2701	SSF55073	Nucleotide cyclase
CJA_2703	SSF53383	PLP-dependent transferases
CJA_2706	SSF51011	Glycosyl hydrolase domain
CJA_2706	SSF51445	(Trans)glycosidases
CJA_2706	SSF56988	Anthrax protective antigen
CJA_2706	SSF74650	Galactose mutarotase-like
CJA_2707	SSF51445	(Trans)glycosidases
CJA_2709	SSF56935	Porins
CJA_2710	SSF48208	Six-hairpin glycosidases
CJA_2713	SSF51905	FAD/NAD(P)-binding domain
CJA_2715	SSF56931	Outer membrane phospholipase A (OMPLA)
CJA_2718	SSF53850	Periplasmic binding protein-like II
CJA_2719	SSF161098	MetI-like
CJA_2720	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2723	SSF160467	PH0987 N-terminal domain-like
CJA_2723	SSF50891	Cyclophilin-like
CJA_2723	SSF51230	Single hybrid motif
CJA_2723	SSF51246	Rudiment single hybrid motif
CJA_2723	SSF52440	PreATP-grasp domain
CJA_2723	SSF56059	Glutathione synthetase ATP-binding domain-like
CJA_2725	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
CJA_2725	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
CJA_2726	SSF103473	MFS general substrate transporter
CJA_2726	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_2728	SSF54523	Pili subunits
CJA_2729	SSF54523	Pili subunits
CJA_2730	SSF160246	EspE N-terminal domain-like
CJA_2730	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2733	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2734	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
CJA_2736	SSF110087	DR1885-like metal-binding protein
CJA_2737	SSF48452	TPR-like
CJA_2738	SSF52833	Thioredoxin-like
CJA_2738	SSF74863	Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
CJA_2739	SSF52304	Type II 3-dehydroquinate dehydratase
CJA_2740	SSF51230	Single hybrid motif
CJA_2741	SSF51246	Rudiment single hybrid motif
CJA_2741	SSF52440	PreATP-grasp domain
CJA_2741	SSF56059	Glutathione synthetase ATP-binding domain-like
CJA_2742	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_2744	SSF53850	Periplasmic binding protein-like II
CJA_2745	SSF51395	FMN-linked oxidoreductases
CJA_2746	SSF46689	Homeodomain-like
CJA_2747	SSF52335	Methylglyoxal synthase-like
CJA_2747	SSF53927	Cytidine deaminase-like
CJA_2748	SSF51246	Rudiment single hybrid motif
CJA_2748	SSF52440	PreATP-grasp domain
CJA_2748	SSF56059	Glutathione synthetase ATP-binding domain-like
CJA_2753	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_2753	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
CJA_2755	SSF51161	Trimeric LpxA-like enzymes
CJA_2757	SSF51230	Single hybrid motif
CJA_2757	SSF51569	Aldolase
CJA_2757	SSF89000	post-HMGL domain-like
CJA_2759	SSF49695	gamma-Crystallin-like
CJA_2759	SSF49785	Galactose-binding domain-like
CJA_2759	SSF49899	Concanavalin A-like lectins/glucanases
CJA_2760	SSF49785	Galactose-binding domain-like
CJA_2760	SSF51445	(Trans)glycosidases
CJA_2762	SSF46689	Homeodomain-like
CJA_2763	SSF49299	PKD domain
CJA_2763	SSF49785	Galactose-binding domain-like
CJA_2763	SSF49899	Concanavalin A-like lectins/glucanases
CJA_2763	SSF51445	(Trans)glycosidases
CJA_2764	SSF52440	PreATP-grasp domain
CJA_2764	SSF56059	Glutathione synthetase ATP-binding domain-like
CJA_2768	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
CJA_2769	SSF51011	Glycosyl hydrolase domain
CJA_2769	SSF51445	(Trans)glycosidases
CJA_2770	SSF51445	(Trans)glycosidases
CJA_2771	SSF141571	Pentapeptide repeat-like
CJA_2772	SSF51556	Metallo-dependent hydrolases
CJA_2773	SSF63829	Calcium-dependent phosphotriesterase
CJA_2776	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_2777	SSF46785	"Winged helix" DNA-binding domain
CJA_2777	SSF48008	GntR ligand-binding domain-like
CJA_2778	SSF109755	PhoU-like
CJA_2779	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2780	SSF161098	MetI-like
CJA_2781	SSF161098	MetI-like
CJA_2781	SSF50978	WD40 repeat-like
CJA_2782	SSF53850	Periplasmic binding protein-like II
CJA_2783	SSF101738	SspB-like
CJA_2784	SSF46626	Cytochrome c
CJA_2784	SSF81342	Transmembrane di-heme cytochromes
CJA_2784	SSF81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
CJA_2785	SSF50022	ISP domain
CJA_2786	SSF54211	Ribosomal protein S5 domain 2-like
CJA_2787	SSF52161	Ribosomal protein L13
CJA_2788	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2789	SSF53474	alpha/beta-Hydrolases
CJA_2792	SSF50156	PDZ domain-like
CJA_2792	SSF50494	Trypsin-like serine proteases
CJA_2793	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2794	SSF53720	ALDH-like
CJA_2795	SSF53850	Periplasmic binding protein-like II
CJA_2796	SSF55205	EPT/RTPC-like
CJA_2797	SSF82657	BolA-like
CJA_2800	SSF53697	SIS domain
CJA_2801	SSF56784	HAD-like
CJA_2804	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2807	SSF69754	Ribosome binding protein Y (YfiA homologue)
CJA_2808	SSF55804	Phoshotransferase/anion transport protein
CJA_2809	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2810	SSF55594	HPr-like
CJA_2812	SSF158710	PSPTO4464-like
CJA_2813	SSF50249	Nucleic acid-binding proteins
CJA_2814	SSF52972	ITPase-like
CJA_2817	SSF53067	Actin-like ATPase domain
CJA_2818	SSF141000	Glu-tRNAGln amidotransferase C subunit
CJA_2819	SSF75304	Amidase signature (AS) enzymes
CJA_2820	SSF55931	Glutamine synthetase/guanido kinase
CJA_2820	SSF89095	GatB/YqeY motif
CJA_2822	SSF53098	Ribonuclease H-like
CJA_2823	SSF103088	OmpA-like
CJA_2824	SSF52075	Outer arm dynein light chain 1
CJA_2827	SSF56104	SAICAR synthase-like
CJA_2828	SSF56281	Metallo-hydrolase/oxidoreductase
CJA_2830	SSF51569	Aldolase
CJA_2831	SSF142754	NadA-like
CJA_2834	SSF141868	EAL domain-like
CJA_2834	SSF55073	Nucleotide cyclase
CJA_2834	SSF55781	GAF domain-like
CJA_2834	SSF55785	PYP-like sensor domain (PAS domain)
CJA_2835	SSF52402	Adenine nucleotide alpha hydrolases-like
CJA_2836	SSF102114	Radical SAM enzymes
CJA_2837	SSF55073	Nucleotide cyclase
CJA_2839	SSF143865	CorA soluble domain-like
CJA_2839	SSF144083	Magnesium transport protein CorA, transmembrane region
CJA_2843	SSF52833	Thioredoxin-like
CJA_2845	SSF158472	HAMP domain-like
CJA_2845	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_2845	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_2846	SSF46894	C-terminal effector domain of the bipartite response regulators
CJA_2846	SSF52172	CheY-like
CJA_2847	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2848	SSF49482	Aromatic compound dioxygenase
CJA_2849	SSF55073	Nucleotide cyclase
CJA_2849	SSF63829	Calcium-dependent phosphotriesterase
CJA_2857	SSF53098	Ribonuclease H-like
CJA_2859	SSF56601	beta-lactamase/transpeptidase-like
CJA_2867	SSF56935	Porins
CJA_2869	SSF46626	Cytochrome c
CJA_2869	SSF49299	PKD domain
CJA_2869	SSF49373	Invasin/intimin cell-adhesion fragments
CJA_2869	SSF50952	Soluble quinoprotein glucose dehydrogenase
CJA_2872	SSF51011	Glycosyl hydrolase domain
CJA_2872	SSF51445	(Trans)glycosidases
CJA_2872	SSF74650	Galactose mutarotase-like
CJA_2873	SSF56935	Porins
CJA_2874	SSF53822	Periplasmic binding protein-like I
CJA_2874	SSF55073	Nucleotide cyclase
CJA_2876	SSF141868	EAL domain-like
CJA_2876	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
CJA_2876	SSF52172	CheY-like
CJA_2877	SSF53383	PLP-dependent transferases
CJA_2878	SSF53671	Aspartate/ornithine carbamoyltransferase
CJA_2881	SSF51905	FAD/NAD(P)-binding domain
CJA_2882	SSF56935	Porins
CJA_2884	SSF53955	Lysozyme-like
CJA_2885	SSF160631	SMI1/KNR4-like
CJA_2886	SSF53098	Ribonuclease H-like
CJA_2886	SSF56672	DNA/RNA polymerases
CJA_2887	SSF51445	(Trans)glycosidases
CJA_2887	SSF55545	beta-N-acetylhexosaminidase-like domain
CJA_2888	SSF51445	(Trans)glycosidases
CJA_2889	SSF52266	SGNH hydrolase
CJA_2891	SSF48113	Heme-dependent peroxidases
CJA_2892	SSF51695	PLC-like phosphodiesterases
CJA_2894	SSF50182	Sm-like ribonucleoproteins
CJA_2895	SSF53383	PLP-dependent transferases
CJA_2896	SSF52733	Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
CJA_2898	SSF53254	Phosphoglycerate mutase-like
CJA_2899	SSF56784	HAD-like
CJA_2901	SSF53383	PLP-dependent transferases
CJA_2902	SSF53474	alpha/beta-Hydrolases
CJA_2903	SSF54211	Ribosomal protein S5 domain 2-like
CJA_2903	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_2903	SSF56719	Type II DNA topoisomerase
CJA_2904	SSF53474	alpha/beta-Hydrolases
CJA_2905	SSF56300	Metallo-dependent phosphatases
CJA_2908	SSF55811	Nudix
CJA_2910	SSF53613	Ribokinase-like
CJA_2913	SSF56954	Outer membrane efflux proteins (OEP)
CJA_2914	SSF51126	Pectin lyase-like
CJA_2915	SSF110296	Oligoxyloglucan reducing end-specific cellobiohydrolase
CJA_2915	SSF50939	Sialidases
CJA_2916	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_2917	SSF51391	Thiamin phosphate synthase
CJA_2917	SSF55811	Nudix
CJA_2918	SSF56266	DmpA/ArgJ-like
CJA_2919	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2919	SSF81767	Pre-protein crosslinking domain of SecA
CJA_2919	SSF81886	Helical scaffold and wing domains of SecA
CJA_2920	SSF51261	Duplicated hybrid motif
CJA_2921	SSF54211	Ribosomal protein S5 domain 2-like
CJA_2923	SSF52490	Tubulin nucleotide-binding domain-like
CJA_2923	SSF55307	Tubulin C-terminal domain-like
CJA_2925	SSF53067	Actin-like ATPase domain
CJA_2927	SSF52440	PreATP-grasp domain
CJA_2927	SSF56059	Glutathione synthetase ATP-binding domain-like
CJA_2928	SSF51984	MurCD N-terminal domain
CJA_2928	SSF53244	MurD-like peptide ligases, peptide-binding domain
CJA_2928	SSF53623	MurD-like peptide ligases, catalytic domain
CJA_2929	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_2931	SSF51984	MurCD N-terminal domain
CJA_2931	SSF53244	MurD-like peptide ligases, peptide-binding domain
CJA_2931	SSF53623	MurD-like peptide ligases, catalytic domain
CJA_2933	SSF53244	MurD-like peptide ligases, peptide-binding domain
CJA_2933	SSF53623	MurD-like peptide ligases, catalytic domain
CJA_2933	SSF63418	MurE/MurF N-terminal domain
CJA_2934	SSF53244	MurD-like peptide ligases, peptide-binding domain
CJA_2934	SSF53623	MurD-like peptide ligases, catalytic domain
CJA_2934	SSF63418	MurE/MurF N-terminal domain
CJA_2935	SSF56519	Penicillin binding protein dimerisation domain
CJA_2935	SSF56601	beta-lactamase/transpeptidase-like
CJA_2937	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_2937	SSF81799	Putative methyltransferase TM0872, insert domain
CJA_2938	SSF89447	AbrB/MazE/MraZ-like
CJA_2939	SSF141868	EAL domain-like
CJA_2939	SSF52172	CheY-like
CJA_2940	SSF52172	CheY-like
CJA_2940	SSF52738	Methylesterase CheB, C-terminal domain
CJA_2941	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
CJA_2942	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
CJA_2942	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_2943	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
CJA_2944	SSF50341	CheW-like
CJA_2945	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
CJA_2945	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_2945	SSF50341	CheW-like
CJA_2945	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_2946	SSF52091	SpoIIaa-like
CJA_2947	SSF52172	CheY-like
CJA_2948	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
CJA_2950	SSF51621	Phosphoenolpyruvate/pyruvate domain
CJA_2954	SSF50692	ADC-like
CJA_2954	SSF52218	Flavoproteins
CJA_2954	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
CJA_2954	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
CJA_2954	SSF63380	Riboflavin synthase domain-like
CJA_2955	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
CJA_2957	SSF141868	EAL domain-like
CJA_2957	SSF52172	CheY-like
CJA_2957	SSF55073	Nucleotide cyclase
CJA_2957	SSF55785	PYP-like sensor domain (PAS domain)
CJA_2959	SSF51445	(Trans)glycosidases
CJA_2960	SSF55021	ACT-like
CJA_2960	SSF56784	HAD-like
CJA_2962	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_2962	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
CJA_2963	SSF53850	Periplasmic binding protein-like II
CJA_2964	SSF51984	MurCD N-terminal domain
CJA_2964	SSF53244	MurD-like peptide ligases, peptide-binding domain
CJA_2964	SSF53623	MurD-like peptide ligases, catalytic domain
CJA_2965	SSF89623	Ribose/Galactose isomerase RpiB/AlsB
CJA_2966	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
CJA_2967	SSF51569	Aldolase
CJA_2969	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_2971	SSF160443	SMR domain-like
CJA_2972	SSF56801	Acetyl-CoA synthetase-like
CJA_2974	SSF50692	ADC-like
CJA_2975	SSF52374	Nucleotidylyl transferase
CJA_2976	SSF50800	PK beta-barrel domain-like
CJA_2977	SSF143120	YefM-like
CJA_2978	SSF48024	N-terminal domain of DnaB helicase
CJA_2978	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_2979	SSF143011	RelE-like
CJA_2980	SSF55653	Ribosomal protein L9 C-domain
CJA_2980	SSF55658	L9 N-domain-like
CJA_2981	SSF46911	Ribosomal protein S18
CJA_2982	SSF54995	Ribosomal protein S6
CJA_2983	SSF49384	Carbohydrate-binding domain
CJA_2983	SSF51445	(Trans)glycosidases
CJA_2983	SSF57615	Type X cellulose binding domain, CBDX
CJA_2984	SSF49785	Galactose-binding domain-like
CJA_2984	SSF49899	Concanavalin A-like lectins/glucanases
CJA_2985	SSF49785	Galactose-binding domain-like
CJA_2985	SSF49899	Concanavalin A-like lectins/glucanases
CJA_2987	SSF53098	Ribonuclease H-like
CJA_2991	SSF46689	Homeodomain-like
CJA_2993	SSF51055	Carbohydrate binding domain
CJA_2993	SSF51445	(Trans)glycosidases
CJA_2994	SSF55315	L30e-like
CJA_2994	SSF75217	alpha/beta knot
CJA_2995	SSF50249	Nucleic acid-binding proteins
CJA_2997	SSF53474	alpha/beta-Hydrolases
CJA_2998	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
CJA_2998	SSF52151	FabD/lysophospholipase-like
CJA_2998	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
CJA_2999	SSF51905	FAD/NAD(P)-binding domain
CJA_3000	SSF47336	ACP-like
CJA_3000	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_3000	SSF53474	alpha/beta-Hydrolases
CJA_3000	SSF53901	Thiolase-like
CJA_3001	SSF47336	ACP-like
CJA_3001	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3001	SSF53901	Thiolase-like
CJA_3002	SSF47336	ACP-like
CJA_3002	SSF50129	GroES-like
CJA_3002	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3002	SSF53901	Thiolase-like
CJA_3003	SSF47336	ACP-like
CJA_3003	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3003	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_3003	SSF53901	Thiolase-like
CJA_3004	SSF47336	ACP-like
CJA_3004	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3004	SSF56801	Acetyl-CoA synthetase-like
CJA_3007	SSF49899	Concanavalin A-like lectins/glucanases
CJA_3007	SSF75005	Arabinanase/levansucrase/invertase
CJA_3008	SSF51011	Glycosyl hydrolase domain
CJA_3008	SSF51445	(Trans)glycosidases
CJA_3010	SSF51445	(Trans)glycosidases
CJA_3011	SSF46689	Homeodomain-like
CJA_3012	SSF75005	Arabinanase/levansucrase/invertase
CJA_3013	SSF103473	MFS general substrate transporter
CJA_3014	SSF56784	HAD-like
CJA_3015	SSF50443	FucI/AraA C-terminal domain-like
CJA_3015	SSF53743	FucI/AraA N-terminal and middle domains
CJA_3016	SSF53639	AraD/HMP-PK domain-like
CJA_3017	SSF53067	Actin-like ATPase domain
CJA_3018	SSF75005	Arabinanase/levansucrase/invertase
CJA_3019	SSF53822	Periplasmic binding protein-like I
CJA_3020	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3023	SSF53850	Periplasmic binding protein-like II
CJA_3024	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
CJA_3024	SSF88946	Sigma2 domain of RNA polymerase sigma factors
CJA_3025	SSF51316	Mss4-like
CJA_3026	SSF54909	Dimeric alpha+beta barrel
CJA_3027	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
CJA_3028	SSF54909	Dimeric alpha+beta barrel
CJA_3029	SSF55136	Probable bacterial effector-binding domain
CJA_3030	SSF52490	Tubulin nucleotide-binding domain-like
CJA_3031	SSF141523	L,D-transpeptidase catalytic domain-like
CJA_3031	SSF47090	PGBD-like
CJA_3033	SSF50156	PDZ domain-like
CJA_3033	SSF52096	ClpP/crotonase
CJA_3038	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3045	SSF160719	gpW/gp25-like
CJA_3047	SSF69255	gp5 N-terminal domain-like
CJA_3048	SSF69279	Phage tail proteins
CJA_3060	SSF46689	Homeodomain-like
CJA_3060	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3061	SSF51658	Xylose isomerase-like
CJA_3062	SSF53067	Actin-like ATPase domain
CJA_3063	SSF46785	"Winged helix" DNA-binding domain
CJA_3063	SSF55811	Nudix
CJA_3064	SSF103473	MFS general substrate transporter
CJA_3066	SSF49785	Galactose-binding domain-like
CJA_3066	SSF51445	(Trans)glycosidases
CJA_3067	SSF49899	Concanavalin A-like lectins/glucanases
CJA_3067	SSF75005	Arabinanase/levansucrase/invertase
CJA_3068	SSF55545	beta-N-acetylhexosaminidase-like domain
CJA_3069	SSF51604	Enolase C-terminal domain-like
CJA_3069	SSF54826	Enolase N-terminal domain-like
CJA_3070	SSF75005	Arabinanase/levansucrase/invertase
CJA_3071	SSF49785	Galactose-binding domain-like
CJA_3072	SSF56935	Porins
CJA_3073	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3074	SSF55681	Class II aaRS and biotin synthetases
CJA_3076	SSF117892	Band 7/SPFH domain
CJA_3077	SSF117892	Band 7/SPFH domain
CJA_3078	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3078	SSF54980	EF-G C-terminal domain-like
CJA_3079	SSF50182	Sm-like ribonucleoproteins
CJA_3080	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3081	SSF118116	DNA mismatch repair protein MutL
CJA_3081	SSF54211	Ribosomal protein S5 domain 2-like
CJA_3081	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_3082	SSF53187	Zn-dependent exopeptidases
CJA_3082	SSF54106	LysM domain
CJA_3085	SSF141868	EAL domain-like
CJA_3085	SSF53850	Periplasmic binding protein-like II
CJA_3085	SSF55073	Nucleotide cyclase
CJA_3086	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3087	SSF53613	Ribokinase-like
CJA_3087	SSF64153	YjeF N-terminal domain-like
CJA_3092	SSF53850	Periplasmic binding protein-like II
CJA_3093	SSF46548	alpha-helical ferredoxin
CJA_3096	SSF51905	FAD/NAD(P)-binding domain
CJA_3098	SSF51905	FAD/NAD(P)-binding domain
CJA_3098	SSF88946	Sigma2 domain of RNA polymerase sigma factors
CJA_3099	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
CJA_3099	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3101	SSF51905	FAD/NAD(P)-binding domain
CJA_3101	SSF54373	FAD-linked reductases, C-terminal domain
CJA_3102	SSF51658	Xylose isomerase-like
CJA_3103	SSF52266	SGNH hydrolase
CJA_3104	SSF49384	Carbohydrate-binding domain
CJA_3104	SSF49785	Galactose-binding domain-like
CJA_3104	SSF81853	Family 10 polysaccharide lyase
CJA_3106	SSF49384	Carbohydrate-binding domain
CJA_3107	SSF49384	Carbohydrate-binding domain
CJA_3107	SSF49785	Galactose-binding domain-like
CJA_3108	SSF53474	alpha/beta-Hydrolases
CJA_3110	SSF56601	beta-lactamase/transpeptidase-like
CJA_3112	SSF53474	alpha/beta-Hydrolases
CJA_3115	SSF53474	alpha/beta-Hydrolases
CJA_3117	SSF53098	Ribonuclease H-like
CJA_3118	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3119	SSF52821	Rhodanese/Cell cycle control phosphatase
CJA_3120	SSF49785	Galactose-binding domain-like
CJA_3120	SSF51126	Pectin lyase-like
CJA_3126	SSF51011	Glycosyl hydrolase domain
CJA_3126	SSF51445	(Trans)glycosidases
CJA_3127	SSF88713	Glycoside hydrolase/deacetylase
CJA_3131	SSF141371	PilZ domain-like
CJA_3132	SSF101904	GyrA/ParC C-terminal domain-like
CJA_3132	SSF56719	Type II DNA topoisomerase
CJA_3133	SSF117070	LEA14-like
CJA_3137	SSF56281	Metallo-hydrolase/oxidoreductase
CJA_3139	SSF57615	Type X cellulose binding domain, CBDX
CJA_3139	SSF81296	E set domains
CJA_3143	SSF109604	HD-domain/PDEase-like
CJA_3144	SSF51726	UROD/MetE-like
CJA_3146	SSF46548	alpha-helical ferredoxin
CJA_3146	SSF51971	Nucleotide-binding domain
CJA_3147	SSF51395	FMN-linked oxidoreductases
CJA_3147	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
CJA_3147	SSF69336	Alpha subunit of glutamate synthase, C-terminal domain
CJA_3150	SSF51905	FAD/NAD(P)-binding domain
CJA_3151	SSF46785	"Winged helix" DNA-binding domain
CJA_3151	SSF53850	Periplasmic binding protein-like II
CJA_3155	SSF52317	Class I glutamine amidotransferase-like
CJA_3158	SSF52833	Thioredoxin-like
CJA_3159	SSF52833	Thioredoxin-like
CJA_3160	SSF56935	Porins
CJA_3161	SSF49452	Starch-binding domain-like
CJA_3161	SSF51011	Glycosyl hydrolase domain
CJA_3161	SSF51445	(Trans)glycosidases
CJA_3161	SSF81296	E set domains
CJA_3162	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_3163	SSF160996	HI0933 insert domain-like
CJA_3163	SSF51905	FAD/NAD(P)-binding domain
CJA_3164	SSF49785	Galactose-binding domain-like
CJA_3164	SSF52266	SGNH hydrolase
CJA_3166	SSF63411	LuxS/MPP-like metallohydrolase
CJA_3169	SSF158832	Tex N-terminal region-like
CJA_3169	SSF47781	RuvA domain 2-like
CJA_3169	SSF50249	Nucleic acid-binding proteins
CJA_3169	SSF53098	Ribonuclease H-like
CJA_3170	SSF51366	Ribulose-phoshate binding barrel
CJA_3171	SSF57783	Zinc beta-ribbon
CJA_3171	SSF82057	Prokaryotic SH3-related domain
CJA_3173	SSF53649	Alkaline phosphatase-like
CJA_3174	SSF53649	Alkaline phosphatase-like
CJA_3174	SSF63446	Type I dockerin domain
CJA_3176	SSF48371	ARM repeat
CJA_3176	SSF48452	TPR-like
CJA_3176	SSF48695	Multiheme cytochromes
CJA_3177	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_3178	SSF46894	C-terminal effector domain of the bipartite response regulators
CJA_3178	SSF52172	CheY-like
CJA_3179	SSF54427	NTF2-like
CJA_3182	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
CJA_3185	SSF56672	DNA/RNA polymerases
CJA_3186	SSF56349	DNA breaking-rejoining enzymes
CJA_3187	SSF56954	Outer membrane efflux proteins (OEP)
CJA_3188	SSF111369	HlyD-like secretion proteins
CJA_3191	SSF48452	TPR-like
CJA_3192	SSF103481	Multidrug resistance efflux transporter EmrE
CJA_3194	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3194	SSF81923	Double Clp-N motif
CJA_3195	SSF103473	MFS general substrate transporter
CJA_3196	SSF53474	alpha/beta-Hydrolases
CJA_3197	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_3198	SSF47336	ACP-like
CJA_3198	SSF50129	GroES-like
CJA_3198	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3198	SSF52151	FabD/lysophospholipase-like
CJA_3198	SSF52777	CoA-dependent acyltransferases
CJA_3198	SSF53901	Thiolase-like
CJA_3198	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
CJA_3202	SSF54909	Dimeric alpha+beta barrel
CJA_3203	SSF54909	Dimeric alpha+beta barrel
CJA_3204	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
CJA_3205	SSF55120	Pseudouridine synthase
CJA_3205	SSF55174	Alpha-L RNA-binding motif
CJA_3206	SSF48452	TPR-like
CJA_3207	SSF52402	Adenine nucleotide alpha hydrolases-like
CJA_3207	SSF56317	Carbon-nitrogen hydrolase
CJA_3208	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_3208	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_3209	SSF46689	Homeodomain-like
CJA_3209	SSF52172	CheY-like
CJA_3209	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3210	SSF54523	Pili subunits
CJA_3211	SSF50998	Quinoprotein alcohol dehydrogenase-like
CJA_3213	SSF54523	Pili subunits
CJA_3215	SSF54534	FKBP-like
CJA_3217	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
CJA_3217	SSF50677	ValRS/IleRS/LeuRS editing domain
CJA_3217	SSF52374	Nucleotidylyl transferase
CJA_3218	SSF52374	Nucleotidylyl transferase
CJA_3218	SSF82114	Riboflavin kinase-like
CJA_3221	SSF53850	Periplasmic binding protein-like II
CJA_3223	SSF51197	Clavaminate synthase-like
CJA_3223	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_3224	SSF51695	PLC-like phosphodiesterases
CJA_3225	SSF46785	"Winged helix" DNA-binding domain
CJA_3233	SSF56935	Porins
CJA_3236	SSF51182	RmlC-like cupins
CJA_3237	SSF53383	PLP-dependent transferases
CJA_3238	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_3240	SSF46785	"Winged helix" DNA-binding domain
CJA_3242	SSF53098	Ribonuclease H-like
CJA_3243	SSF51445	(Trans)glycosidases
CJA_3244	SSF56935	Porins
CJA_3246	SSF56935	Porins
CJA_3247	SSF49344	CBD9-like
CJA_3247	SSF51011	Glycosyl hydrolase domain
CJA_3247	SSF51445	(Trans)glycosidases
CJA_3248	SSF51011	Glycosyl hydrolase domain
CJA_3248	SSF51445	(Trans)glycosidases
CJA_3248	SSF74650	Galactose mutarotase-like
CJA_3249	SSF51011	Glycosyl hydrolase domain
CJA_3249	SSF51445	(Trans)glycosidases
CJA_3250	SSF56796	Dehydroquinate synthase-like
CJA_3251	SSF51197	Clavaminate synthase-like
CJA_3252	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3252	SSF56327	LDH C-terminal domain-like
CJA_3253	SSF53067	Actin-like ATPase domain
CJA_3254	SSF51161	Trimeric LpxA-like enzymes
CJA_3254	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_3255	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_3256	SSF56112	Protein kinase-like (PK-like)
CJA_3257	SSF53383	PLP-dependent transferases
CJA_3258	SSF51182	RmlC-like cupins
CJA_3260	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3260	SSF90123	ABC transporter transmembrane region
CJA_3261	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3261	SSF90123	ABC transporter transmembrane region
CJA_3262	SSF53613	Ribokinase-like
CJA_3263	SSF49344	CBD9-like
CJA_3263	SSF51011	Glycosyl hydrolase domain
CJA_3263	SSF51445	(Trans)glycosidases
CJA_3264	SSF52833	Thioredoxin-like
CJA_3267	SSF52833	Thioredoxin-like
CJA_3269	SSF56925	OMPA-like
CJA_3270	SSF56925	OMPA-like
CJA_3272	SSF82171	DPP6 N-terminal domain-like
CJA_3275	SSF49899	Concanavalin A-like lectins/glucanases
CJA_3278	SSF46689	Homeodomain-like
CJA_3279	SSF49384	Carbohydrate-binding domain
CJA_3279	SSF51011	Glycosyl hydrolase domain
CJA_3279	SSF51445	(Trans)glycosidases
CJA_3280	SSF49384	Carbohydrate-binding domain
CJA_3280	SSF49785	Galactose-binding domain-like
CJA_3280	SSF51445	(Trans)glycosidases
CJA_3281	SSF49384	Carbohydrate-binding domain
CJA_3281	SSF49785	Galactose-binding domain-like
CJA_3281	SSF75005	Arabinanase/levansucrase/invertase
CJA_3282	SSF49384	Carbohydrate-binding domain
CJA_3282	SSF49785	Galactose-binding domain-like
CJA_3282	SSF53474	alpha/beta-Hydrolases
CJA_3284	SSF46689	Homeodomain-like
CJA_3286	SSF49384	Carbohydrate-binding domain
CJA_3286	SSF49785	Galactose-binding domain-like
CJA_3287	SSF49384	Carbohydrate-binding domain
CJA_3287	SSF49785	Galactose-binding domain-like
CJA_3287	SSF53474	alpha/beta-Hydrolases
CJA_3288	SSF56349	DNA breaking-rejoining enzymes
CJA_3290	SSF54506	Diaminopimelate epimerase-like
CJA_3291	SSF50621	Alanine racemase C-terminal domain-like
CJA_3291	SSF51419	PLP-binding barrel
CJA_3293	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3294	SSF49879	SMAD/FHA domain
CJA_3295	SSF48452	TPR-like
CJA_3295	SSF56112	Protein kinase-like (PK-like)
CJA_3298	SSF56935	Porins
CJA_3299	SSF46689	Homeodomain-like
CJA_3304	SSF56935	Porins
CJA_3305	SSF49265	Fibronectin type III
CJA_3305	SSF49785	Galactose-binding domain-like
CJA_3305	SSF51445	(Trans)glycosidases
CJA_3306	SSF51445	(Trans)glycosidases
CJA_3307	SSF48208	Six-hairpin glycosidases
CJA_3311	SSF69318	Integrin alpha N-terminal domain
CJA_3312	SSF74653	TolA/TonB C-terminal domain
CJA_3317	SSF48452	TPR-like
CJA_3318	SSF48452	TPR-like
CJA_3319	SSF48452	TPR-like
CJA_3321	SSF143631	ApbE-like
CJA_3323	SSF103054	General secretion pathway protein M, EpsM
CJA_3324	SSF53067	Actin-like ATPase domain
CJA_3325	SSF158544	GspK insert domain-like
CJA_3325	SSF54523	Pili subunits
CJA_3326	SSF54523	Pili subunits
CJA_3327	SSF54523	Pili subunits
CJA_3328	SSF54523	Pili subunits
CJA_3329	SSF54523	Pili subunits
CJA_3331	SSF160246	EspE N-terminal domain-like
CJA_3331	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3333	SSF50156	PDZ domain-like
CJA_3334	SSF116842	XseB-like
CJA_3335	SSF48576	Terpenoid synthases
CJA_3336	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
CJA_3336	SSF52922	TK C-terminal domain-like
CJA_3337	SSF49384	Carbohydrate-binding domain
CJA_3337	SSF51445	(Trans)glycosidases
CJA_3337	SSF57615	Type X cellulose binding domain, CBDX
CJA_3338	SSF51445	(Trans)glycosidases
CJA_3338	SSF57615	Type X cellulose binding domain, CBDX
CJA_3339	SSF53474	alpha/beta-Hydrolases
CJA_3340	SSF50129	GroES-like
CJA_3340	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3341	SSF46785	"Winged helix" DNA-binding domain
CJA_3341	SSF53850	Periplasmic binding protein-like II
CJA_3342	SSF103473	MFS general substrate transporter
CJA_3343	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3343	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
CJA_3344	SSF51658	Xylose isomerase-like
CJA_3346	SSF46565	Chaperone J-domain
CJA_3346	SSF49493	HSP40/DnaJ peptide-binding domain
CJA_3346	SSF57938	DnaJ/Hsp40 cysteine-rich domain
CJA_3347	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
CJA_3347	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
CJA_3347	SSF53067	Actin-like ATPase domain
CJA_3348	SSF51064	Head domain of nucleotide exchange factor GrpE
CJA_3348	SSF58014	Coiled-coil domain of nucleotide exchange factor GrpE
CJA_3350	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
CJA_3351	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3352	SSF46785	"Winged helix" DNA-binding domain
CJA_3354	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
CJA_3354	SSF52172	CheY-like
CJA_3354	SSF55073	Nucleotide cyclase
CJA_3355	SSF141868	EAL domain-like
CJA_3355	SSF55073	Nucleotide cyclase
CJA_3355	SSF55785	PYP-like sensor domain (PAS domain)
CJA_3356	SSF52172	CheY-like
CJA_3357	SSF109604	HD-domain/PDEase-like
CJA_3358	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_3358	SSF55781	GAF domain-like
CJA_3358	SSF55785	PYP-like sensor domain (PAS domain)
CJA_3358	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_3359	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_3359	SSF52172	CheY-like
CJA_3359	SSF55781	GAF domain-like
CJA_3359	SSF55785	PYP-like sensor domain (PAS domain)
CJA_3359	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_3360	SSF54285	MoaD/ThiS
CJA_3361	SSF55961	Bet v1-like
CJA_3362	SSF74982	Small protein B (SmpB)
CJA_3363	SSF46894	C-terminal effector domain of the bipartite response regulators
CJA_3365	SSF53474	alpha/beta-Hydrolases
CJA_3366	SSF46894	C-terminal effector domain of the bipartite response regulators
CJA_3369	SSF51445	(Trans)glycosidases
CJA_3372	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_3375	SSF141868	EAL domain-like
CJA_3375	SSF55073	Nucleotide cyclase
CJA_3376	SSF81342	Transmembrane di-heme cytochromes
CJA_3377	SSF54534	FKBP-like
CJA_3380	SSF118215	Proton glutamate symport protein
CJA_3382	SSF53955	Lysozyme-like
CJA_3382	SSF56601	beta-lactamase/transpeptidase-like
CJA_3383	SSF48452	TPR-like
CJA_3385	SSF69618	HemD-like
CJA_3386	SSF53850	Periplasmic binding protein-like II
CJA_3386	SSF54782	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
CJA_3390	SSF54913	GlnB-like
CJA_3391	SSF111352	Ammonium transporter
CJA_3392	SSF54913	GlnB-like
CJA_3394	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3394	SSF54211	Ribosomal protein S5 domain 2-like
CJA_3395	SSF141868	EAL domain-like
CJA_3395	SSF52172	CheY-like
CJA_3395	SSF55073	Nucleotide cyclase
CJA_3396	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3397	SSF46626	Cytochrome c
CJA_3398	SSF55781	GAF domain-like
CJA_3398	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_3399	SSF46689	Homeodomain-like
CJA_3399	SSF52172	CheY-like
CJA_3399	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3402	SSF49265	Fibronectin type III
CJA_3405	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_3406	SSF56801	Acetyl-CoA synthetase-like
CJA_3407	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_3408	SSF88713	Glycoside hydrolase/deacetylase
CJA_3410	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_3411	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_3413	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_3415	SSF48239	Terpenoid cyclases/Protein prenyltransferases
CJA_3416	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_3418	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_3419	SSF48452	TPR-like
CJA_3420	SSF56935	Porins
CJA_3422	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3423	SSF57997	Tropomyosin
CJA_3426	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
CJA_3426	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3426	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
CJA_3427	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3428	SSF88713	Glycoside hydrolase/deacetylase
CJA_3430	SSF53474	alpha/beta-Hydrolases
CJA_3432	SSF143011	RelE-like
CJA_3433	SSF47413	lambda repressor-like DNA-binding domains
CJA_3434	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
CJA_3434	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3434	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
CJA_3435	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3436	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_3437	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3438	SSF51182	RmlC-like cupins
CJA_3440	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3441	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_3442	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_3444	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_3445	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_3447	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
CJA_3448	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_3450	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_3451	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_3452	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_3454	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_3455	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3455	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_3456	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3459	SSF55073	Nucleotide cyclase
CJA_3460	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
CJA_3460	SSF56645	Acyl-CoA dehydrogenase NM domain-like
CJA_3462	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3464	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3465	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3466	SSF56935	Porins
CJA_3467	SSF51905	FAD/NAD(P)-binding domain
CJA_3468	SSF53850	Periplasmic binding protein-like II
CJA_3469	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
CJA_3470	SSF49785	Galactose-binding domain-like
CJA_3470	SSF51055	Carbohydrate binding domain
CJA_3470	SSF51445	(Trans)glycosidases
CJA_3470	SSF57615	Type X cellulose binding domain, CBDX
CJA_3472	SSF55073	Nucleotide cyclase
CJA_3474	SSF52833	Thioredoxin-like
CJA_3476	SSF46626	Cytochrome c
CJA_3477	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3478	SSF47807	5' to 3' exonuclease, C-terminal subdomain
CJA_3478	SSF53098	Ribonuclease H-like
CJA_3478	SSF56672	DNA/RNA polymerases
CJA_3478	SSF88723	PIN domain-like
CJA_3480	SSF53807	"Helical backbone" metal receptor
CJA_3482	SSF46785	"Winged helix" DNA-binding domain
CJA_3483	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3484	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
CJA_3486	SSF56300	Metallo-dependent phosphatases
CJA_3488	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
CJA_3489	SSF56529	FAH
CJA_3490	SSF109604	HD-domain/PDEase-like
CJA_3490	SSF55826	YbaK/ProRS associated domain
CJA_3491	SSF50249	Nucleic acid-binding proteins
CJA_3491	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3492	SSF46785	"Winged helix" DNA-binding domain
CJA_3492	SSF53850	Periplasmic binding protein-like II
CJA_3493	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3494	SSF103088	OmpA-like
CJA_3494	SSF56925	OMPA-like
CJA_3495	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_3497	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
CJA_3497	SSF88946	Sigma2 domain of RNA polymerase sigma factors
CJA_3499	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3500	SSF47364	Domain of the SRP/SRP receptor G-proteins
CJA_3500	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3501	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_3502	SSF160246	EspE N-terminal domain-like
CJA_3502	SSF49265	Fibronectin type III
CJA_3503	SSF52374	Nucleotidylyl transferase
CJA_3505	SSF46946	S13-like H2TH domain
CJA_3505	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
CJA_3505	SSF81624	N-terminal domain of MutM-like DNA repair proteins
CJA_3509	SSF49503	Cupredoxins
CJA_3510	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_3510	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_3511	SSF46894	C-terminal effector domain of the bipartite response regulators
CJA_3511	SSF52172	CheY-like
CJA_3513	SSF116726	TrkA C-terminal domain-like
CJA_3513	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3514	SSF57829	Zn-binding ribosomal proteins
CJA_3515	SSF143800	L28p-like
CJA_3516	SSF53850	Periplasmic binding protein-like II
CJA_3519	SSF48452	TPR-like
CJA_3519	SSF55073	Nucleotide cyclase
CJA_3521	SSF46785	"Winged helix" DNA-binding domain
CJA_3521	SSF51206	cAMP-binding domain-like
CJA_3522	SSF102712	JAB1/MPN domain
CJA_3522	SSF47781	RuvA domain 2-like
CJA_3523	SSF102645	CoaB-like
CJA_3523	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
CJA_3524	SSF53738	Phosphoglucomutase, first 3 domains
CJA_3524	SSF55957	Phosphoglucomutase, C-terminal domain
CJA_3525	SSF53633	Carbamate kinase-like
CJA_3526	SSF46689	Homeodomain-like
CJA_3526	SSF48498	Tetracyclin repressor-like, C-terminal domain
CJA_3528	SSF53271	PRTase-like
CJA_3529	SSF56219	DNase I-like
CJA_3530	SSF54909	Dimeric alpha+beta barrel
CJA_3531	SSF143437	THUMP domain-like
CJA_3531	SSF52402	Adenine nucleotide alpha hydrolases-like
CJA_3531	SSF52821	Rhodanese/Cell cycle control phosphatase
CJA_3534	SSF54368	Glutamine synthetase, N-terminal domain
CJA_3534	SSF55931	Glutamine synthetase/guanido kinase
CJA_3536	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_3536	SSF55785	PYP-like sensor domain (PAS domain)
CJA_3536	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_3537	SSF46689	Homeodomain-like
CJA_3537	SSF52172	CheY-like
CJA_3537	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3538	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
CJA_3539	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_3541	SSF54631	CBS-domain pair
CJA_3541	SSF56176	FAD-binding/transporter-associated domain-like
CJA_3546	SSF51197	Clavaminate synthase-like
CJA_3547	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3550	SSF88713	Glycoside hydrolase/deacetylase
CJA_3551	SSF50156	PDZ domain-like
CJA_3551	SSF52096	ClpP/crotonase
CJA_3552	SSF51261	Duplicated hybrid motif
CJA_3553	SSF53649	Alkaline phosphatase-like
CJA_3553	SSF64158	2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
CJA_3555	SSF52821	Rhodanese/Cell cycle control phosphatase
CJA_3556	SSF52833	Thioredoxin-like
CJA_3557	SSF54611	SecB-like
CJA_3558	SSF109604	HD-domain/PDEase-like
CJA_3558	SSF53067	Actin-like ATPase domain
CJA_3559	SSF49265	Fibronectin type III
CJA_3559	SSF49384	Carbohydrate-binding domain
CJA_3559	SSF69318	Integrin alpha N-terminal domain
CJA_3560	SSF140356	PPK N-terminal domain-like
CJA_3560	SSF143724	PHP14-like
CJA_3560	SSF56024	Phospholipase D/nuclease
CJA_3563	SSF46626	Cytochrome c
CJA_3564	SSF56601	beta-lactamase/transpeptidase-like
CJA_3566	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3568	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_3569	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3570	SSF63562	RPB6/omega subunit-like
CJA_3571	SSF109604	HD-domain/PDEase-like
CJA_3571	SSF55021	ACT-like
CJA_3571	SSF81271	TGS-like
CJA_3571	SSF81301	Nucleotidyltransferase
CJA_3572	SSF55298	YjgF-like
CJA_3573	SSF51905	FAD/NAD(P)-binding domain
CJA_3573	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
CJA_3579	SSF116726	TrkA C-terminal domain-like
CJA_3579	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3580	SSF48013	NusB-like
CJA_3580	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_3581	SSF50486	FMT C-terminal domain-like
CJA_3581	SSF53328	Formyltransferase
CJA_3582	SSF56420	Peptide deformylase
CJA_3583	SSF54106	LysM domain
CJA_3584	SSF103190	Sensory domain-like
CJA_3584	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
CJA_3585	SSF102405	MCP/YpsA-like
CJA_3586	SSF55821	YrdC/RibB
CJA_3587	SSF102886	Coproporphyrinogen III oxidase
CJA_3588	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3588	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
CJA_3590	SSF53474	alpha/beta-Hydrolases
CJA_3591	SSF53474	alpha/beta-Hydrolases
CJA_3593	SSF48208	Six-hairpin glycosidases
CJA_3594	SSF49899	Concanavalin A-like lectins/glucanases
CJA_3594	SSF75005	Arabinanase/levansucrase/invertase
CJA_3595	SSF47413	lambda repressor-like DNA-binding domains
CJA_3595	SSF53822	Periplasmic binding protein-like I
CJA_3596	SSF56935	Porins
CJA_3598	SSF53474	alpha/beta-Hydrolases
CJA_3600	SSF49899	Concanavalin A-like lectins/glucanases
CJA_3601	SSF49899	Concanavalin A-like lectins/glucanases
CJA_3601	SSF75005	Arabinanase/levansucrase/invertase
CJA_3602	SSF63411	LuxS/MPP-like metallohydrolase
CJA_3604	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3604	SSF90123	ABC transporter transmembrane region
CJA_3607	SSF88723	PIN domain-like
CJA_3608	SSF89447	AbrB/MazE/MraZ-like
CJA_3609	SSF46785	"Winged helix" DNA-binding domain
CJA_3609	SSF53850	Periplasmic binding protein-like II
CJA_3611	SSF51182	RmlC-like cupins
CJA_3612	SSF143011	RelE-like
CJA_3613	SSF47413	lambda repressor-like DNA-binding domains
CJA_3615	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3616	SSF111369	HlyD-like secretion proteins
CJA_3617	SSF46689	Homeodomain-like
CJA_3618	SSF50331	MOP-like
CJA_3618	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3619	SSF161098	MetI-like
CJA_3620	SSF53850	Periplasmic binding protein-like II
CJA_3622	SSF56529	FAH
CJA_3623	SSF53850	Periplasmic binding protein-like II
CJA_3623	SSF55073	Nucleotide cyclase
CJA_3623	SSF55785	PYP-like sensor domain (PAS domain)
CJA_3624	SSF51161	Trimeric LpxA-like enzymes
CJA_3625	SSF55486	Metalloproteases ("zincins"), catalytic domain
CJA_3627	SSF56935	Porins
CJA_3629	SSF51197	Clavaminate synthase-like
CJA_3630	SSF51905	FAD/NAD(P)-binding domain
CJA_3631	SSF48239	Terpenoid cyclases/Protein prenyltransferases
CJA_3632	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3638	SSF116734	DNA methylase specificity domain
CJA_3639	SSF46785	"Winged helix" DNA-binding domain
CJA_3640	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_3641	SSF53383	PLP-dependent transferases
CJA_3641	SSF55904	Ornithine decarboxylase C-terminal domain
CJA_3642	SSF48619	Phospholipase A2, PLA2
CJA_3643	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_3645	SSF56112	Protein kinase-like (PK-like)
CJA_3647	SSF143011	RelE-like
CJA_3647	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3648	SSF52467	DHS-like NAD/FAD-binding domain
CJA_3649	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_3651	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3653	SSF141868	EAL domain-like
CJA_3653	SSF52172	CheY-like
CJA_3653	SSF55073	Nucleotide cyclase
CJA_3654	SSF47384	Homodimeric domain of signal transducing histidine kinase
CJA_3654	SSF52172	CheY-like
CJA_3654	SSF55785	PYP-like sensor domain (PAS domain)
CJA_3654	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CJA_3655	SSF69500	DTD-like
CJA_3656	SSF53474	alpha/beta-Hydrolases
CJA_3657	SSF46785	"Winged helix" DNA-binding domain
CJA_3658	SSF48150	DNA-glycosylase
CJA_3659	SSF50952	Soluble quinoprotein glucose dehydrogenase
CJA_3660	SSF110857	Gamma-glutamyl cyclotransferase-like
CJA_3661	SSF53800	Chelatase
CJA_3662	SSF56925	OMPA-like
CJA_3664	SSF50447	Translation proteins
CJA_3664	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3664	SSF54980	EF-G C-terminal domain-like
CJA_3665	SSF141868	EAL domain-like
CJA_3665	SSF55073	Nucleotide cyclase
CJA_3665	SSF55785	PYP-like sensor domain (PAS domain)
CJA_3666	SSF103647	TSP type-3 repeat
CJA_3666	SSF50969	YVTN repeat-like/Quinoprotein amine dehydrogenase
CJA_3675	SSF69255	gp5 N-terminal domain-like
CJA_3675	SSF69279	Phage tail proteins
CJA_3675	SSF69349	Phage fibre proteins
CJA_3677	SSF160719	gpW/gp25-like
CJA_3685	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3693	SSF50494	Trypsin-like serine proteases
CJA_3695	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
CJA_3695	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
CJA_3695	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
CJA_3696	SSF51230	Single hybrid motif
CJA_3697	SSF56954	Outer membrane efflux proteins (OEP)
CJA_3699	SSF103473	MFS general substrate transporter
CJA_3700	SSF46785	"Winged helix" DNA-binding domain
CJA_3702	SSF47413	lambda repressor-like DNA-binding domains
CJA_3703	SSF103481	Multidrug resistance efflux transporter EmrE
CJA_3704	SSF49899	Concanavalin A-like lectins/glucanases
CJA_3705	SSF46689	Homeodomain-like
CJA_3706	SSF49785	Galactose-binding domain-like
CJA_3706	SSF49899	Concanavalin A-like lectins/glucanases
CJA_3707	SSF75011	3-carboxy-cis,cis-mucoante lactonizing enzyme
CJA_3708	SSF102114	Radical SAM enzymes
CJA_3709	SSF47598	Ribbon-helix-helix
CJA_3710	SSF143011	RelE-like
CJA_3711	SSF46785	"Winged helix" DNA-binding domain
CJA_3711	SSF53383	PLP-dependent transferases
CJA_3712	SSF54862	4Fe-4S ferredoxins
CJA_3714	SSF55785	PYP-like sensor domain (PAS domain)
CJA_3714	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
CJA_3716	SSF46785	"Winged helix" DNA-binding domain
CJA_3716	SSF53850	Periplasmic binding protein-like II
CJA_3717	SSF47413	lambda repressor-like DNA-binding domains
CJA_3720	SSF47413	lambda repressor-like DNA-binding domains
CJA_3721	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
CJA_3721	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
CJA_3722	SSF56935	Porins
CJA_3724	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3726	SSF143120	YefM-like
CJA_3729	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3730	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3734	SSF53098	Ribonuclease H-like
CJA_3735	SSF46689	Homeodomain-like
CJA_3737	SSF51905	FAD/NAD(P)-binding domain
CJA_3738	SSF46785	"Winged helix" DNA-binding domain
CJA_3739	SSF47413	lambda repressor-like DNA-binding domains
CJA_3741	SSF55961	Bet v1-like
CJA_3742	SSF46785	"Winged helix" DNA-binding domain
CJA_3743	SSF53474	alpha/beta-Hydrolases
CJA_3744	SSF46785	"Winged helix" DNA-binding domain
CJA_3744	SSF53850	Periplasmic binding protein-like II
CJA_3745	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3746	SSF46894	C-terminal effector domain of the bipartite response regulators
CJA_3747	SSF47090	PGBD-like
CJA_3747	SSF53955	Lysozyme-like
CJA_3749	SSF56645	Acyl-CoA dehydrogenase NM domain-like
CJA_3750	SSF53383	PLP-dependent transferases
CJA_3751	SSF55729	Acyl-CoA N-acyltransferases (Nat)
CJA_3752	SSF51905	FAD/NAD(P)-binding domain
CJA_3753	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
CJA_3754	SSF52777	CoA-dependent acyltransferases
CJA_3755	SSF51395	FMN-linked oxidoreductases
CJA_3756	SSF51905	FAD/NAD(P)-binding domain
CJA_3757	SSF51735	NAD(P)-binding Rossmann-fold domains
CJA_3760	SSF54001	Cysteine proteinases
CJA_3761	SSF48371	ARM repeat
CJA_3762	SSF49899	Concanavalin A-like lectins/glucanases
CJA_3763	SSF49899	Concanavalin A-like lectins/glucanases
CJA_3763	SSF57615	Type X cellulose binding domain, CBDX
CJA_3763	SSF88713	Glycoside hydrolase/deacetylase
CJA_3766	SSF103481	Multidrug resistance efflux transporter EmrE
CJA_3767	SSF53807	"Helical backbone" metal receptor
CJA_3768	SSF53383	PLP-dependent transferases
CJA_3770	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3771	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3772	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
CJA_3773	SSF52317	Class I glutamine amidotransferase-like
CJA_3773	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3774	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3775	SSF56935	Porins
CJA_3777	SSF51905	FAD/NAD(P)-binding domain
CJA_3784	SSF49265	Fibronectin type III
CJA_3784	SSF51445	(Trans)glycosidases
CJA_3785	SSF53098	Ribonuclease H-like
CJA_3786	SSF46689	Homeodomain-like
CJA_3787	SSF53271	PRTase-like
CJA_3789	SSF56059	Glutathione synthetase ATP-binding domain-like
CJA_3790	SSF53167	Purine and uridine phosphorylases
CJA_3791	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_3792	SSF53098	Ribonuclease H-like
CJA_3793	SSF46689	Homeodomain-like
CJA_3794	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3799	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3800	SSF53098	Ribonuclease H-like
CJA_3801	SSF46785	"Winged helix" DNA-binding domain
CJA_3801	SSF52980	Restriction endonuclease-like
CJA_3802	SSF53697	SIS domain
CJA_3802	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
CJA_3803	SSF100950	NagB/RpiA/CoA transferase-like
CJA_3803	SSF46785	"Winged helix" DNA-binding domain
CJA_3804	SSF48208	Six-hairpin glycosidases
CJA_3804	SSF81296	E set domains
CJA_3805	SSF47413	lambda repressor-like DNA-binding domains
CJA_3806	SSF51161	Trimeric LpxA-like enzymes
CJA_3806	SSF53448	Nucleotide-diphospho-sugar transferases
CJA_3807	SSF103642	Sec-C motif
CJA_3807	SSF54427	NTF2-like
CJA_3808	SSF46604	Epsilon subunit of F1F0-ATP synthase C-terminal domain
CJA_3808	SSF51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain
CJA_3809	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
CJA_3809	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
CJA_3809	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3810	SSF52943	ATP synthase (F1-ATPase), gamma subunit
CJA_3811	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
CJA_3811	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
CJA_3811	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3812	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase
CJA_3813	SSF81573	F1F0 ATP synthase subunit B, membrane domain
CJA_3814	SSF81333	F1F0 ATP synthase subunit C
CJA_3815	SSF81336	F1F0 ATP synthase subunit A
CJA_3817	SSF110849	ParB/Sulfiredoxin
CJA_3818	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3819	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CJA_3820	SSF51905	FAD/NAD(P)-binding domain
CJA_3822	SSF116878	TrmE connector domain
CJA_3822	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CJA_3825	SSF54211	Ribosomal protein S5 domain 2-like