CPE2_0001	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CPE2_0001	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CPE2_0006	PWY-5913	TCA cycle VI (obligate autotrophs)
CPE2_0006	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CPE2_0006	PWY-6638	sulfolactate degradation III
CPE2_0006	PWY-6642	(<i>R</i>)-cysteate degradation
CPE2_0006	PWY-6643	coenzyme M biosynthesis II
CPE2_0006	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CPE2_0006	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CPE2_0006	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CPE2_0022	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CPE2_0022	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CPE2_0030	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CPE2_0037	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CPE2_0059	PWY-6823	molybdenum cofactor biosynthesis
CPE2_0059	PWY-6891	thiazole biosynthesis II (Bacillus)
CPE2_0059	PWY-6892	thiazole biosynthesis I (E. coli)
CPE2_0059	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CPE2_0067	PWY-1042	glycolysis IV (plant cytosol)
CPE2_0067	PWY-5484	glycolysis II (from fructose 6-phosphate)
CPE2_0067	PWY-6886	1-butanol autotrophic biosynthesis
CPE2_0067	PWY-6901	superpathway of glucose and xylose degradation
CPE2_0067	PWY-7003	glycerol degradation to butanol
CPE2_0092	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CPE2_0092	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CPE2_0092	PWY-5989	stearate biosynthesis II (bacteria and plants)
CPE2_0092	PWY-5994	palmitate biosynthesis I (animals and fungi)
CPE2_0092	PWY-6113	superpathway of mycolate biosynthesis
CPE2_0092	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CPE2_0092	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CPE2_0092	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CPE2_0092	PWYG-321	mycolate biosynthesis
CPE2_0119	PWY-1042	glycolysis IV (plant cytosol)
CPE2_0119	PWY-5484	glycolysis II (from fructose 6-phosphate)
CPE2_0119	PWY-6901	superpathway of glucose and xylose degradation
CPE2_0119	PWY-7003	glycerol degradation to butanol
CPE2_0125	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CPE2_0125	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CPE2_0125	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CPE2_0125	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CPE2_0125	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CPE2_0125	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CPE2_0125	PWY-7205	CMP phosphorylation
CPE2_0125	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CPE2_0125	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CPE2_0125	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CPE2_0125	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CPE2_0125	PWY-7224	purine deoxyribonucleosides salvage
CPE2_0125	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CPE2_0125	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CPE2_0126	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CPE2_0126	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CPE2_0130	PWY-5269	cardiolipin biosynthesis II
CPE2_0130	PWY-5668	cardiolipin biosynthesis I
CPE2_0135	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CPE2_0137	PWY-5686	UMP biosynthesis
CPE2_0138	PWY-622	starch biosynthesis
CPE2_0168	PWY-7560	methylerythritol phosphate pathway II
CPE2_0176	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CPE2_0176	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CPE2_0179	PWY-7205	CMP phosphorylation
CPE2_0188	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CPE2_0201	PWY-7560	methylerythritol phosphate pathway II
CPE2_0218	PWY-6167	flavin biosynthesis II (archaea)
CPE2_0218	PWY-6168	flavin biosynthesis III (fungi)
CPE2_0218	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CPE2_0228	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CPE2_0228	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CPE2_0229	PWY-1622	formaldehyde assimilation I (serine pathway)
CPE2_0229	PWY-181	photorespiration
CPE2_0229	PWY-2161	folate polyglutamylation
CPE2_0229	PWY-2201	folate transformations I
CPE2_0229	PWY-3661	glycine betaine degradation I
CPE2_0229	PWY-3661-1	glycine betaine degradation II (mammalian)
CPE2_0229	PWY-3841	folate transformations II
CPE2_0229	PWY-5497	purine nucleobases degradation II (anaerobic)
CPE2_0231	PWY-2941	L-lysine biosynthesis II
CPE2_0231	PWY-5097	L-lysine biosynthesis VI
CPE2_0234	PWY-5839	menaquinol-7 biosynthesis
CPE2_0234	PWY-5844	menaquinol-9 biosynthesis
CPE2_0234	PWY-5849	menaquinol-6 biosynthesis
CPE2_0234	PWY-5890	menaquinol-10 biosynthesis
CPE2_0234	PWY-5891	menaquinol-11 biosynthesis
CPE2_0234	PWY-5892	menaquinol-12 biosynthesis
CPE2_0234	PWY-5895	menaquinol-13 biosynthesis
CPE2_0236	PWY-5198	factor 420 biosynthesis
CPE2_0254	PWY-5097	L-lysine biosynthesis VI
CPE2_0263	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CPE2_0263	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CPE2_0263	PWY-6164	3-dehydroquinate biosynthesis I
CPE2_0271	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
CPE2_0271	PWY-622	starch biosynthesis
CPE2_0290	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CPE2_0304	PWY-6891	thiazole biosynthesis II (Bacillus)
CPE2_0304	PWY-6892	thiazole biosynthesis I (E. coli)
CPE2_0304	PWY-7560	methylerythritol phosphate pathway II
CPE2_0308	PWY-1042	glycolysis IV (plant cytosol)
CPE2_0308	PWY-5484	glycolysis II (from fructose 6-phosphate)
CPE2_0308	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CPE2_0308	PWY-7003	glycerol degradation to butanol
CPE2_0331	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CPE2_0331	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CPE2_0335	PWY-6749	CMP-legionaminate biosynthesis I
CPE2_0336	PWY-6854	ethylene biosynthesis III (microbes)
CPE2_0337	PWY-4381	fatty acid biosynthesis initiation I
CPE2_0337	PWY-5743	3-hydroxypropanoate cycle
CPE2_0337	PWY-5744	glyoxylate assimilation
CPE2_0337	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CPE2_0337	PWY-6679	jadomycin biosynthesis
CPE2_0337	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CPE2_0338	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CPE2_0338	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CPE2_0338	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CPE2_0338	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CPE2_0347	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CPE2_0347	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CPE2_0370	PWY-4381	fatty acid biosynthesis initiation I
CPE2_0370	PWY-5743	3-hydroxypropanoate cycle
CPE2_0370	PWY-5744	glyoxylate assimilation
CPE2_0370	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CPE2_0370	PWY-6679	jadomycin biosynthesis
CPE2_0370	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CPE2_0388	PWY-6823	molybdenum cofactor biosynthesis
CPE2_0388	PWY-6891	thiazole biosynthesis II (Bacillus)
CPE2_0388	PWY-6892	thiazole biosynthesis I (E. coli)
CPE2_0388	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CPE2_0392	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CPE2_0398	PWY-5988	wound-induced proteolysis I
CPE2_0398	PWY-6018	seed germination protein turnover
CPE2_0404	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CPE2_0407	PWY-7560	methylerythritol phosphate pathway II
CPE2_0426	PWY-7560	methylerythritol phosphate pathway II
CPE2_0433	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CPE2_0433	PWY-2201	folate transformations I
CPE2_0433	PWY-3841	folate transformations II
CPE2_0433	PWY-5030	L-histidine degradation III
CPE2_0433	PWY-5497	purine nucleobases degradation II (anaerobic)
CPE2_0433	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CPE2_0441	PWY-5941	glycogen degradation II (eukaryotic)
CPE2_0441	PWY-6724	starch degradation II
CPE2_0441	PWY-6737	starch degradation V
CPE2_0441	PWY-7238	sucrose biosynthesis II
CPE2_0447	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CPE2_0447	PWY-6167	flavin biosynthesis II (archaea)
CPE2_0447	PWY-6168	flavin biosynthesis III (fungi)
CPE2_0454	PWY-6012	acyl carrier protein metabolism I
CPE2_0454	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CPE2_0460	PWY-5941	glycogen degradation II (eukaryotic)
CPE2_0460	PWY-622	starch biosynthesis
CPE2_0460	PWY-6731	starch degradation III
CPE2_0460	PWY-6737	starch degradation V
CPE2_0460	PWY-7238	sucrose biosynthesis II
CPE2_0469	PWY-4381	fatty acid biosynthesis initiation I
CPE2_0470	PWY-4381	fatty acid biosynthesis initiation I
CPE2_0470	PWY-6799	fatty acid biosynthesis (plant mitochondria)
CPE2_0470	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CPE2_0471	PWY-5367	petroselinate biosynthesis
CPE2_0471	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CPE2_0471	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CPE2_0471	PWY-5989	stearate biosynthesis II (bacteria and plants)
CPE2_0471	PWY-5994	palmitate biosynthesis I (animals and fungi)
CPE2_0471	PWY-6113	superpathway of mycolate biosynthesis
CPE2_0471	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CPE2_0471	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CPE2_0471	PWY-6951	CPE2_0471|fabG|YP_008582702.1|GeneID:17051149
CPE2_0471	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
CPE2_0471	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CPE2_0471	PWYG-321	mycolate biosynthesis
CPE2_0494	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CPE2_0494	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CPE2_0494	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CPE2_0494	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CPE2_0494	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CPE2_0494	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CPE2_0498	PWY-7533	gliotoxin biosynthesis
CPE2_0506	PWY-5381	pyridine nucleotide cycling (plants)
CPE2_0506	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CPE2_0506	PWY-6596	adenosine nucleotides degradation I
CPE2_0506	PWY-6606	guanosine nucleotides degradation II
CPE2_0506	PWY-6607	guanosine nucleotides degradation I
CPE2_0506	PWY-6608	guanosine nucleotides degradation III
CPE2_0506	PWY-7185	UTP and CTP dephosphorylation I
CPE2_0521	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CPE2_0525	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CPE2_0525	PWY-6855	chitin degradation I (archaea)
CPE2_0525	PWY-6906	chitin derivatives degradation
CPE2_0526	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CPE2_0528	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CPE2_0528	PWY-7177	UTP and CTP dephosphorylation II
CPE2_0528	PWY-7185	UTP and CTP dephosphorylation I
CPE2_0529	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CPE2_0529	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CPE2_0539	PWY-6700	queuosine biosynthesis
CPE2_0547	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CPE2_0564	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CPE2_0564	PWY-5723	Rubisco shunt
CPE2_0584	PWY-1042	glycolysis IV (plant cytosol)
CPE2_0584	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CPE2_0584	PWY-5484	glycolysis II (from fructose 6-phosphate)
CPE2_0584	PWY-7385	1,3-propanediol biosynthesis (engineered)
CPE2_0586	PWY-1042	glycolysis IV (plant cytosol)
CPE2_0586	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CPE2_0586	PWY-5484	glycolysis II (from fructose 6-phosphate)
CPE2_0586	PWY-7385	1,3-propanediol biosynthesis (engineered)
CPE2_0603	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CPE2_0606	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CPE2_0606	PWY-5723	Rubisco shunt
CPE2_0607	PWY-5663	tetrahydrobiopterin biosynthesis I
CPE2_0607	PWY-5664	tetrahydrobiopterin biosynthesis II
CPE2_0607	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CPE2_0607	PWY-6703	preQ<sub>0</sub> biosynthesis
CPE2_0607	PWY-6983	tetrahydrobiopterin biosynthesis III
CPE2_0607	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CPE2_0619	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CPE2_0622	PWY-6829	tRNA methylation (yeast)
CPE2_0622	PWY-7285	methylwyosine biosynthesis
CPE2_0622	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CPE2_0641	PWY-1042	glycolysis IV (plant cytosol)
CPE2_0641	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CPE2_0641	PWY-5484	glycolysis II (from fructose 6-phosphate)
CPE2_0641	PWY-5723	Rubisco shunt
CPE2_0641	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CPE2_0641	PWY-6886	1-butanol autotrophic biosynthesis
CPE2_0641	PWY-6901	superpathway of glucose and xylose degradation
CPE2_0641	PWY-7003	glycerol degradation to butanol
CPE2_0641	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CPE2_0641	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CPE2_0649	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CPE2_0650	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CPE2_0655	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CPE2_0655	PWY-5723	Rubisco shunt
CPE2_0672	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
CPE2_0672	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
CPE2_0683	PWY-2941	L-lysine biosynthesis II
CPE2_0683	PWY-2942	L-lysine biosynthesis III
CPE2_0683	PWY-5097	L-lysine biosynthesis VI
CPE2_0684	PWY-2941	L-lysine biosynthesis II
CPE2_0684	PWY-2942	L-lysine biosynthesis III
CPE2_0684	PWY-5097	L-lysine biosynthesis VI
CPE2_0684	PWY-6559	spermidine biosynthesis II
CPE2_0684	PWY-6562	norspermidine biosynthesis
CPE2_0684	PWY-7153	grixazone biosynthesis
CPE2_0685	PWY-2941	L-lysine biosynthesis II
CPE2_0685	PWY-2942	L-lysine biosynthesis III
CPE2_0685	PWY-5097	L-lysine biosynthesis VI
CPE2_0685	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CPE2_0685	PWY-6559	spermidine biosynthesis II
CPE2_0685	PWY-6562	norspermidine biosynthesis
CPE2_0685	PWY-7153	grixazone biosynthesis
CPE2_0685	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CPE2_0686	PWY-2941	L-lysine biosynthesis II
CPE2_0686	PWY-2942	L-lysine biosynthesis III
CPE2_0686	PWY-5097	L-lysine biosynthesis VI
CPE2_0688	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CPE2_0690	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CPE2_0693	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CPE2_0694	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CPE2_0695	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CPE2_0696	PWY-6164	3-dehydroquinate biosynthesis I
CPE2_0697	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CPE2_0697	PWY-6416	quinate degradation II
CPE2_0697	PWY-6707	gallate biosynthesis
CPE2_0700	PWY-40	putrescine biosynthesis I
CPE2_0700	PWY-43	putrescine biosynthesis II
CPE2_0700	PWY-6305	putrescine biosynthesis IV
CPE2_0700	PWY-6834	spermidine biosynthesis III
CPE2_0704	PWY-1622	formaldehyde assimilation I (serine pathway)
CPE2_0704	PWY-5392	reductive TCA cycle II
CPE2_0704	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CPE2_0704	PWY-5690	TCA cycle II (plants and fungi)
CPE2_0704	PWY-5913	TCA cycle VI (obligate autotrophs)
CPE2_0704	PWY-6728	methylaspartate cycle
CPE2_0704	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CPE2_0704	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CPE2_0704	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CPE2_0705	PWY-3801	sucrose degradation II (sucrose synthase)
CPE2_0705	PWY-5054	sorbitol biosynthesis I
CPE2_0705	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CPE2_0705	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CPE2_0705	PWY-5659	GDP-mannose biosynthesis
CPE2_0705	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CPE2_0705	PWY-621	sucrose degradation III (sucrose invertase)
CPE2_0705	PWY-622	starch biosynthesis
CPE2_0705	PWY-6531	mannitol cycle
CPE2_0705	PWY-6981	chitin biosynthesis
CPE2_0705	PWY-7238	sucrose biosynthesis II
CPE2_0705	PWY-7347	sucrose biosynthesis III
CPE2_0705	PWY-7385	1,3-propanediol biosynthesis (engineered)
CPE2_0713	PWY-6424	CPE2_0713|CPE2_0713|YP_008582928.1|GeneID:17051391
CPE2_0714	PWY-7560	methylerythritol phosphate pathway II
CPE2_0718	PWY-5392	reductive TCA cycle II
CPE2_0718	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CPE2_0718	PWY-5690	TCA cycle II (plants and fungi)
CPE2_0718	PWY-5913	TCA cycle VI (obligate autotrophs)
CPE2_0718	PWY-6728	methylaspartate cycle
CPE2_0718	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CPE2_0718	PWY-7254	TCA cycle VII (acetate-producers)
CPE2_0718	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CPE2_0720	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CPE2_0745	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CPE2_0745	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CPE2_0749	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CPE2_0749	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CPE2_0749	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CPE2_0749	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CPE2_0749	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CPE2_0749	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CPE2_0749	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CPE2_0749	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CPE2_0750	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CPE2_0750	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CPE2_0750	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CPE2_0750	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CPE2_0750	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CPE2_0750	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CPE2_0750	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CPE2_0750	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CPE2_0756	PWY-5392	reductive TCA cycle II
CPE2_0756	PWY-5537	pyruvate fermentation to acetate V
CPE2_0756	PWY-5538	pyruvate fermentation to acetate VI
CPE2_0756	PWY-5690	TCA cycle II (plants and fungi)
CPE2_0756	PWY-5913	TCA cycle VI (obligate autotrophs)
CPE2_0756	PWY-6728	methylaspartate cycle
CPE2_0756	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CPE2_0756	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CPE2_0757	PWY-5392	reductive TCA cycle II
CPE2_0757	PWY-5537	pyruvate fermentation to acetate V
CPE2_0757	PWY-5538	pyruvate fermentation to acetate VI
CPE2_0757	PWY-5690	TCA cycle II (plants and fungi)
CPE2_0757	PWY-5913	TCA cycle VI (obligate autotrophs)
CPE2_0757	PWY-6728	methylaspartate cycle
CPE2_0757	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CPE2_0757	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CPE2_0761	PWY-6749	CMP-legionaminate biosynthesis I
CPE2_0762	PWY-6749	CMP-legionaminate biosynthesis I
CPE2_0771	PWY-5667	CDP-diacylglycerol biosynthesis I
CPE2_0771	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
CPE2_0775	PWY-7560	methylerythritol phosphate pathway II
CPE2_0782	PWY-622	starch biosynthesis
CPE2_0783	PWY-5269	cardiolipin biosynthesis II
CPE2_0783	PWY-5668	cardiolipin biosynthesis I
CPE2_0812	PWY-5198	factor 420 biosynthesis
CPE2_0813	PWY-2781	<i>cis</i>-zeatin biosynthesis
CPE2_0818	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CPE2_0818	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CPE2_0819	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CPE2_0819	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CPE2_0819	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CPE2_0819	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CPE2_0822	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CPE2_0822	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CPE2_0823	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CPE2_0823	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CPE2_0823	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CPE2_0824	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CPE2_0824	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CPE2_0831	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CPE2_0831	PWY-5723	Rubisco shunt
CPE2_0831	PWY-6891	thiazole biosynthesis II (Bacillus)
CPE2_0831	PWY-6892	thiazole biosynthesis I (E. coli)
CPE2_0831	PWY-6901	superpathway of glucose and xylose degradation
CPE2_0831	PWY-7560	methylerythritol phosphate pathway II
CPE2_0834	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CPE2_0834	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CPE2_0836	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CPE2_0836	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CPE2_0853	PWY-6167	flavin biosynthesis II (archaea)
CPE2_0853	PWY-6168	flavin biosynthesis III (fungi)
CPE2_0854	PWY-6167	flavin biosynthesis II (archaea)
CPE2_0854	PWY-6168	flavin biosynthesis III (fungi)
CPE2_0854	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CPE2_0856	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CPE2_0860	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CPE2_0860	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CPE2_0863	PWY-1622	formaldehyde assimilation I (serine pathway)
CPE2_0863	PWY-5484	glycolysis II (from fructose 6-phosphate)
CPE2_0868	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CPE2_0871	PWY-5667	CDP-diacylglycerol biosynthesis I
CPE2_0871	PWY-5981	CDP-diacylglycerol biosynthesis III
CPE2_0875	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CPE2_0887	PWY-5669	phosphatidylethanolamine biosynthesis I
CPE2_0893	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CPE2_0893	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CPE2_0894	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CPE2_0894	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CPE2_0894	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CPE2_0923	PWY-1042	glycolysis IV (plant cytosol)
CPE2_0923	PWY-1622	formaldehyde assimilation I (serine pathway)
CPE2_0923	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CPE2_0923	PWY-5484	glycolysis II (from fructose 6-phosphate)
CPE2_0923	PWY-5723	Rubisco shunt
CPE2_0923	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CPE2_0923	PWY-6886	1-butanol autotrophic biosynthesis
CPE2_0923	PWY-6901	superpathway of glucose and xylose degradation
CPE2_0923	PWY-7003	glycerol degradation to butanol
CPE2_0923	PWY-7124	ethylene biosynthesis V (engineered)
CPE2_0923	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CPE2_0928	PWY-3781	aerobic respiration I (cytochrome c)
CPE2_0928	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CPE2_0928	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CPE2_0928	PWY-5690	TCA cycle II (plants and fungi)
CPE2_0928	PWY-6728	methylaspartate cycle
CPE2_0928	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CPE2_0928	PWY-7254	TCA cycle VII (acetate-producers)
CPE2_0928	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CPE2_0929	PWY-3781	aerobic respiration I (cytochrome c)
CPE2_0929	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CPE2_0929	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CPE2_0929	PWY-5690	TCA cycle II (plants and fungi)
CPE2_0929	PWY-6728	methylaspartate cycle
CPE2_0929	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CPE2_0929	PWY-7254	TCA cycle VII (acetate-producers)
CPE2_0929	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CPE2_0944	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CPE2_0965	PWY-3221	dTDP-L-rhamnose biosynthesis II
CPE2_0965	PWY-6808	dTDP-D-forosamine biosynthesis
CPE2_0965	PWY-6942	dTDP-D-desosamine biosynthesis
CPE2_0965	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CPE2_0965	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CPE2_0965	PWY-6974	dTDP-L-olivose biosynthesis
CPE2_0965	PWY-6976	dTDP-L-mycarose biosynthesis
CPE2_0965	PWY-7104	dTDP-L-megosamine biosynthesis
CPE2_0965	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CPE2_0965	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CPE2_0965	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CPE2_0965	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CPE2_0965	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CPE2_0965	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CPE2_0965	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CPE2_0965	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CPE2_0969	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
