JALI_0031	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
JALI_0271	PWY-6829	tRNA methylation (yeast)
JALI_0271	PWY-7285	methylwyosine biosynthesis
JALI_0271	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
JALI_0301	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
JALI_0381	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
JALI_0451	PWY-5988	wound-induced proteolysis I
JALI_0451	PWY-6018	seed germination protein turnover
JALI_0531	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
JALI_0541	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
JALI_0561	PWY-7560	methylerythritol phosphate pathway II
JALI_0701	PWY-7560	methylerythritol phosphate pathway II
JALI_0771	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
JALI_0771	PWY-2201	folate transformations I
JALI_0771	PWY-3841	folate transformations II
JALI_0771	PWY-5030	L-histidine degradation III
JALI_0771	PWY-5497	purine nucleobases degradation II (anaerobic)
JALI_0771	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
JALI_0861	PWY-5941	glycogen degradation II (eukaryotic)
JALI_0861	PWY-6724	starch degradation II
JALI_0861	PWY-6737	starch degradation V
JALI_0861	PWY-7238	sucrose biosynthesis II
JALI_0921	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
JALI_0921	PWY-6167	flavin biosynthesis II (archaea)
JALI_0921	PWY-6168	flavin biosynthesis III (fungi)
JALI_0991	PWY-6012	acyl carrier protein metabolism I
JALI_0991	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
JALI_1071	PWY-5663	tetrahydrobiopterin biosynthesis I
JALI_1071	PWY-5664	tetrahydrobiopterin biosynthesis II
JALI_1071	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
JALI_1071	PWY-6703	preQ<sub>0</sub> biosynthesis
JALI_1071	PWY-6983	tetrahydrobiopterin biosynthesis III
JALI_1071	PWY-7442	drosopterin and aurodrosopterin biosynthesis
JALI_1201	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
JALI_1201	PWY-5723	Rubisco shunt
JALI_1271	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
JALI_1371	PWY-7533	gliotoxin biosynthesis
JALI_1761	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
JALI_1761	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
JALI_1771	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
JALI_1771	PWY-7177	UTP and CTP dephosphorylation II
JALI_1771	PWY-7185	UTP and CTP dephosphorylation I
JALI_1791	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
JALI_1801	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
JALI_1801	PWY-6855	chitin degradation I (archaea)
JALI_1801	PWY-6906	chitin derivatives degradation
JALI_1821	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
JALI_1821	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
JALI_1821	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
JALI_1821	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
JALI_1821	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
JALI_1821	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
JALI_1871	PWY-6700	queuosine biosynthesis
JALI_1991	PWY-1042	glycolysis IV (plant cytosol)
JALI_1991	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
JALI_1991	PWY-5484	glycolysis II (from fructose 6-phosphate)
JALI_1991	PWY-7385	1,3-propanediol biosynthesis (engineered)
JALI_2011	PWY-1042	glycolysis IV (plant cytosol)
JALI_2011	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
JALI_2011	PWY-5484	glycolysis II (from fructose 6-phosphate)
JALI_2011	PWY-7385	1,3-propanediol biosynthesis (engineered)
JALI_2041	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
JALI_2071	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
JALI_2071	PWY-5723	Rubisco shunt
JALI_2121	PWY-5381	pyridine nucleotide cycling (plants)
JALI_2121	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
JALI_2121	PWY-6596	adenosine nucleotides degradation I
JALI_2121	PWY-6606	guanosine nucleotides degradation II
JALI_2121	PWY-6607	guanosine nucleotides degradation I
JALI_2121	PWY-6608	guanosine nucleotides degradation III
JALI_2121	PWY-7185	UTP and CTP dephosphorylation I
JALI_2321	PWY-5367	petroselinate biosynthesis
JALI_2321	PWY-5971	palmitate biosynthesis II (bacteria and plants)
JALI_2321	PWY-5973	<i>cis</i>-vaccenate biosynthesis
JALI_2321	PWY-5989	stearate biosynthesis II (bacteria and plants)
JALI_2321	PWY-5994	palmitate biosynthesis I (animals and fungi)
JALI_2321	PWY-6113	superpathway of mycolate biosynthesis
JALI_2321	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
JALI_2321	PWY-6519	8-amino-7-oxononanoate biosynthesis I
JALI_2321	PWY-6951	JALI_2321|fabG|YP_002887854.1|GeneID:7882075
JALI_2321	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
JALI_2321	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
JALI_2321	PWYG-321	mycolate biosynthesis
JALI_2331	PWY-4381	fatty acid biosynthesis initiation I
JALI_2331	PWY-6799	fatty acid biosynthesis (plant mitochondria)
JALI_2331	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
JALI_2341	PWY-4381	fatty acid biosynthesis initiation I
JALI_2431	PWY-5941	glycogen degradation II (eukaryotic)
JALI_2431	PWY-622	starch biosynthesis
JALI_2431	PWY-6731	starch degradation III
JALI_2431	PWY-6737	starch degradation V
JALI_2431	PWY-7238	sucrose biosynthesis II
JALI_2531	PWY-6823	molybdenum cofactor biosynthesis
JALI_2531	PWY-6891	thiazole biosynthesis II (Bacillus)
JALI_2531	PWY-6892	thiazole biosynthesis I (E. coli)
JALI_2531	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
JALI_2601	PWY-4381	fatty acid biosynthesis initiation I
JALI_2601	PWY-5743	3-hydroxypropanoate cycle
JALI_2601	PWY-5744	glyoxylate assimilation
JALI_2601	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
JALI_2601	PWY-6679	jadomycin biosynthesis
JALI_2601	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
JALI_2801	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
JALI_2801	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
JALI_2871	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
JALI_2871	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
JALI_2871	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
JALI_2871	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
JALI_2881	PWY-4381	fatty acid biosynthesis initiation I
JALI_2881	PWY-5743	3-hydroxypropanoate cycle
JALI_2881	PWY-5744	glyoxylate assimilation
JALI_2881	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
JALI_2881	PWY-6679	jadomycin biosynthesis
JALI_2881	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
JALI_2891	PWY-6854	ethylene biosynthesis III (microbes)
JALI_2901	PWY-6749	CMP-legionaminate biosynthesis I
JALI_2941	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
JALI_2941	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
JALI_3021	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
JALI_3031	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
JALI_3081	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
JALI_3081	PWY-5723	Rubisco shunt
JALI_3241	PWY-1042	glycolysis IV (plant cytosol)
JALI_3241	PWY-5484	glycolysis II (from fructose 6-phosphate)
JALI_3241	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JALI_3241	PWY-7003	glycerol degradation to butanol
JALI_3281	PWY-6891	thiazole biosynthesis II (Bacillus)
JALI_3281	PWY-6892	thiazole biosynthesis I (E. coli)
JALI_3281	PWY-7560	methylerythritol phosphate pathway II
JALI_3291	PWY-1042	glycolysis IV (plant cytosol)
JALI_3291	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
JALI_3291	PWY-5484	glycolysis II (from fructose 6-phosphate)
JALI_3291	PWY-5723	Rubisco shunt
JALI_3291	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JALI_3291	PWY-6886	1-butanol autotrophic biosynthesis
JALI_3291	PWY-6901	superpathway of glucose and xylose degradation
JALI_3291	PWY-7003	glycerol degradation to butanol
JALI_3291	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
JALI_3291	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
JALI_3591	PWY-2941	L-lysine biosynthesis II
JALI_3591	PWY-2942	L-lysine biosynthesis III
JALI_3591	PWY-5097	L-lysine biosynthesis VI
JALI_3601	PWY-2941	L-lysine biosynthesis II
JALI_3601	PWY-2942	L-lysine biosynthesis III
JALI_3601	PWY-5097	L-lysine biosynthesis VI
JALI_3601	PWY-6559	spermidine biosynthesis II
JALI_3601	PWY-6562	norspermidine biosynthesis
JALI_3601	PWY-7153	grixazone biosynthesis
JALI_3611	PWY-2941	L-lysine biosynthesis II
JALI_3611	PWY-2942	L-lysine biosynthesis III
JALI_3611	PWY-5097	L-lysine biosynthesis VI
JALI_3611	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
JALI_3611	PWY-6559	spermidine biosynthesis II
JALI_3611	PWY-6562	norspermidine biosynthesis
JALI_3611	PWY-7153	grixazone biosynthesis
JALI_3611	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
JALI_3621	PWY-2941	L-lysine biosynthesis II
JALI_3621	PWY-2942	L-lysine biosynthesis III
JALI_3621	PWY-5097	L-lysine biosynthesis VI
JALI_3641	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
JALI_3651	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
JALI_3661	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
JALI_3671	PWY-6164	3-dehydroquinate biosynthesis I
JALI_3681	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
JALI_3681	PWY-6416	quinate degradation II
JALI_3681	PWY-6707	gallate biosynthesis
JALI_3711	PWY-40	putrescine biosynthesis I
JALI_3711	PWY-43	putrescine biosynthesis II
JALI_3711	PWY-6305	putrescine biosynthesis IV
JALI_3711	PWY-6834	spermidine biosynthesis III
JALI_3741	PWY-1622	formaldehyde assimilation I (serine pathway)
JALI_3741	PWY-5392	reductive TCA cycle II
JALI_3741	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
JALI_3741	PWY-5690	TCA cycle II (plants and fungi)
JALI_3741	PWY-5913	TCA cycle VI (obligate autotrophs)
JALI_3741	PWY-6728	methylaspartate cycle
JALI_3741	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
JALI_3741	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
JALI_3741	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
JALI_3761	PWY-3801	sucrose degradation II (sucrose synthase)
JALI_3761	PWY-5054	sorbitol biosynthesis I
JALI_3761	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
JALI_3761	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
JALI_3761	PWY-5659	GDP-mannose biosynthesis
JALI_3761	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JALI_3761	PWY-621	sucrose degradation III (sucrose invertase)
JALI_3761	PWY-622	starch biosynthesis
JALI_3761	PWY-6531	mannitol cycle
JALI_3761	PWY-6981	chitin biosynthesis
JALI_3761	PWY-7238	sucrose biosynthesis II
JALI_3761	PWY-7347	sucrose biosynthesis III
JALI_3761	PWY-7385	1,3-propanediol biosynthesis (engineered)
JALI_3801	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
JALI_3801	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
JALI_3801	PWY-6164	3-dehydroquinate biosynthesis I
JALI_3891	PWY-5097	L-lysine biosynthesis VI
JALI_4041	PWY-6167	flavin biosynthesis II (archaea)
JALI_4041	PWY-6168	flavin biosynthesis III (fungi)
JALI_4041	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
JALI_4271	PWY-5198	factor 420 biosynthesis
JALI_4291	PWY-5839	menaquinol-7 biosynthesis
JALI_4291	PWY-5844	menaquinol-9 biosynthesis
JALI_4291	PWY-5849	menaquinol-6 biosynthesis
JALI_4291	PWY-5890	menaquinol-10 biosynthesis
JALI_4291	PWY-5891	menaquinol-11 biosynthesis
JALI_4291	PWY-5892	menaquinol-12 biosynthesis
JALI_4291	PWY-5895	menaquinol-13 biosynthesis
JALI_4311	PWY-2941	L-lysine biosynthesis II
JALI_4311	PWY-5097	L-lysine biosynthesis VI
JALI_4331	PWY-1622	formaldehyde assimilation I (serine pathway)
JALI_4331	PWY-181	photorespiration
JALI_4331	PWY-2161	folate polyglutamylation
JALI_4331	PWY-2201	folate transformations I
JALI_4331	PWY-3661	glycine betaine degradation I
JALI_4331	PWY-3661-1	glycine betaine degradation II (mammalian)
JALI_4331	PWY-3841	folate transformations II
JALI_4331	PWY-5497	purine nucleobases degradation II (anaerobic)
JALI_4341	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
JALI_4341	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
JALI_4351	PWY-7560	methylerythritol phosphate pathway II
JALI_4471	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
JALI_4541	PWY-7205	CMP phosphorylation
JALI_4571	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
JALI_4571	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
JALI_4641	PWY-7560	methylerythritol phosphate pathway II
JALI_4911	PWY-622	starch biosynthesis
JALI_4931	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
JALI_4981	PWY-5269	cardiolipin biosynthesis II
JALI_4981	PWY-5668	cardiolipin biosynthesis I
JALI_5021	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
JALI_5021	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
JALI_5031	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
JALI_5031	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
JALI_5031	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
JALI_5031	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
JALI_5031	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
JALI_5031	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
JALI_5031	PWY-7205	CMP phosphorylation
JALI_5031	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
JALI_5031	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JALI_5031	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
JALI_5031	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JALI_5031	PWY-7224	purine deoxyribonucleosides salvage
JALI_5031	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
JALI_5031	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
JALI_5081	PWY-1042	glycolysis IV (plant cytosol)
JALI_5081	PWY-5484	glycolysis II (from fructose 6-phosphate)
JALI_5081	PWY-6901	superpathway of glucose and xylose degradation
JALI_5081	PWY-7003	glycerol degradation to butanol
JALI_5351	PWY-5971	palmitate biosynthesis II (bacteria and plants)
JALI_5351	PWY-5973	<i>cis</i>-vaccenate biosynthesis
JALI_5351	PWY-5989	stearate biosynthesis II (bacteria and plants)
JALI_5351	PWY-5994	palmitate biosynthesis I (animals and fungi)
JALI_5351	PWY-6113	superpathway of mycolate biosynthesis
JALI_5351	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
JALI_5351	PWY-6519	8-amino-7-oxononanoate biosynthesis I
JALI_5351	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
JALI_5351	PWYG-321	mycolate biosynthesis
JALI_5601	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
JALI_5601	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
JALI_5611	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
JALI_5611	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
JALI_5611	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
JALI_5901	PWY-1042	glycolysis IV (plant cytosol)
JALI_5901	PWY-1622	formaldehyde assimilation I (serine pathway)
JALI_5901	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
JALI_5901	PWY-5484	glycolysis II (from fructose 6-phosphate)
JALI_5901	PWY-5723	Rubisco shunt
JALI_5901	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JALI_5901	PWY-6886	1-butanol autotrophic biosynthesis
JALI_5901	PWY-6901	superpathway of glucose and xylose degradation
JALI_5901	PWY-7003	glycerol degradation to butanol
JALI_5901	PWY-7124	ethylene biosynthesis V (engineered)
JALI_5901	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
JALI_5941	PWY-3781	aerobic respiration I (cytochrome c)
JALI_5941	PWY-4302	aerobic respiration III (alternative oxidase pathway)
JALI_5941	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
JALI_5941	PWY-5690	TCA cycle II (plants and fungi)
JALI_5941	PWY-6728	methylaspartate cycle
JALI_5941	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
JALI_5941	PWY-7254	TCA cycle VII (acetate-producers)
JALI_5941	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
JALI_5951	PWY-3781	aerobic respiration I (cytochrome c)
JALI_5951	PWY-4302	aerobic respiration III (alternative oxidase pathway)
JALI_5951	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
JALI_5951	PWY-5690	TCA cycle II (plants and fungi)
JALI_5951	PWY-6728	methylaspartate cycle
JALI_5951	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
JALI_5951	PWY-7254	TCA cycle VII (acetate-producers)
JALI_5951	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
JALI_6091	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
JALI_6151	PWY-5199	factor 420 polyglutamylation
JALI_6161	PWY-3841	folate transformations II
JALI_6161	PWY-6614	tetrahydrofolate biosynthesis
JALI_6171	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
JALI_6171	PWY-6148	tetrahydromethanopterin biosynthesis
JALI_6171	PWY-6614	tetrahydrofolate biosynthesis
JALI_6171	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
JALI_6171	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
JALI_6181	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
JALI_6181	PWY-6148	tetrahydromethanopterin biosynthesis
JALI_6181	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
JALI_6181	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
JALI_6331	PWY-3221	dTDP-L-rhamnose biosynthesis II
JALI_6331	PWY-6808	dTDP-D-forosamine biosynthesis
JALI_6331	PWY-6942	dTDP-D-desosamine biosynthesis
JALI_6331	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
JALI_6331	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
JALI_6331	PWY-6974	dTDP-L-olivose biosynthesis
JALI_6331	PWY-6976	dTDP-L-mycarose biosynthesis
JALI_6331	PWY-7104	dTDP-L-megosamine biosynthesis
JALI_6331	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
JALI_6331	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
JALI_6331	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
JALI_6331	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
JALI_6331	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
JALI_6331	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
JALI_6331	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
JALI_6331	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
JALI_6361	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
JALI_6371	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
JALI_6371	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
JALI_6411	PWY-5913	TCA cycle VI (obligate autotrophs)
JALI_6411	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
JALI_6411	PWY-6638	sulfolactate degradation III
JALI_6411	PWY-6642	(<i>R</i>)-cysteate degradation
JALI_6411	PWY-6643	coenzyme M biosynthesis II
JALI_6411	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
JALI_6411	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
JALI_6411	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
JALI_6601	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
JALI_6601	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
JALI_6671	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
JALI_6741	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
JALI_6921	PWY-6823	molybdenum cofactor biosynthesis
JALI_6921	PWY-6891	thiazole biosynthesis II (Bacillus)
JALI_6921	PWY-6892	thiazole biosynthesis I (E. coli)
JALI_6921	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
JALI_6981	PWY-1042	glycolysis IV (plant cytosol)
JALI_6981	PWY-5484	glycolysis II (from fructose 6-phosphate)
JALI_6981	PWY-6886	1-butanol autotrophic biosynthesis
JALI_6981	PWY-6901	superpathway of glucose and xylose degradation
JALI_6981	PWY-7003	glycerol degradation to butanol
JALI_7041	PWY-5669	phosphatidylethanolamine biosynthesis I
JALI_7151	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
JALI_7191	PWY-5667	CDP-diacylglycerol biosynthesis I
JALI_7191	PWY-5981	CDP-diacylglycerol biosynthesis III
JALI_7221	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
JALI_7271	PWY-1622	formaldehyde assimilation I (serine pathway)
JALI_7271	PWY-5484	glycolysis II (from fructose 6-phosphate)
JALI_7301	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
JALI_7301	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
JALI_7341	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
JALI_7361	PWY-6167	flavin biosynthesis II (archaea)
JALI_7361	PWY-6168	flavin biosynthesis III (fungi)
JALI_7361	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
JALI_7371	PWY-6167	flavin biosynthesis II (archaea)
JALI_7371	PWY-6168	flavin biosynthesis III (fungi)
JALI_7521	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
JALI_7521	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
JALI_7551	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
JALI_7551	PWY-5723	Rubisco shunt
JALI_7551	PWY-6891	thiazole biosynthesis II (Bacillus)
JALI_7551	PWY-6892	thiazole biosynthesis I (E. coli)
JALI_7551	PWY-6901	superpathway of glucose and xylose degradation
JALI_7551	PWY-7560	methylerythritol phosphate pathway II
JALI_7611	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
JALI_7611	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
JALI_7621	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
JALI_7621	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
JALI_7621	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
JALI_7631	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
JALI_7631	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
JALI_7661	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
JALI_7661	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
JALI_7661	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
JALI_7661	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
JALI_7671	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
JALI_7671	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
JALI_7711	PWY-2781	<i>cis</i>-zeatin biosynthesis
JALI_7721	PWY-5198	factor 420 biosynthesis
JALI_8031	PWY-5269	cardiolipin biosynthesis II
JALI_8031	PWY-5668	cardiolipin biosynthesis I
JALI_8041	PWY-622	starch biosynthesis
JALI_8101	PWY-7560	methylerythritol phosphate pathway II
JALI_8131	PWY-5667	CDP-diacylglycerol biosynthesis I
JALI_8131	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
JALI_8231	PWY-6749	CMP-legionaminate biosynthesis I
JALI_8241	PWY-6749	CMP-legionaminate biosynthesis I
JALI_8291	PWY-5392	reductive TCA cycle II
JALI_8291	PWY-5537	pyruvate fermentation to acetate V
JALI_8291	PWY-5538	pyruvate fermentation to acetate VI
JALI_8291	PWY-5690	TCA cycle II (plants and fungi)
JALI_8291	PWY-5913	TCA cycle VI (obligate autotrophs)
JALI_8291	PWY-6728	methylaspartate cycle
JALI_8291	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
JALI_8291	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
JALI_8301	PWY-5392	reductive TCA cycle II
JALI_8301	PWY-5537	pyruvate fermentation to acetate V
JALI_8301	PWY-5538	pyruvate fermentation to acetate VI
JALI_8301	PWY-5690	TCA cycle II (plants and fungi)
JALI_8301	PWY-5913	TCA cycle VI (obligate autotrophs)
JALI_8301	PWY-6728	methylaspartate cycle
JALI_8301	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
JALI_8301	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
JALI_8351	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
JALI_8351	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
JALI_8351	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
JALI_8351	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
JALI_8351	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JALI_8351	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JALI_8351	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
JALI_8351	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
JALI_8361	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
JALI_8361	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
JALI_8361	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
JALI_8361	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
JALI_8361	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JALI_8361	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JALI_8361	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
JALI_8361	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
JALI_8391	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
JALI_8391	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
JALI_8641	PWY-5392	reductive TCA cycle II
JALI_8641	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
JALI_8641	PWY-5690	TCA cycle II (plants and fungi)
JALI_8641	PWY-5913	TCA cycle VI (obligate autotrophs)
JALI_8641	PWY-6728	methylaspartate cycle
JALI_8641	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
JALI_8641	PWY-7254	TCA cycle VII (acetate-producers)
JALI_8641	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
JALI_8701	PWY-7560	methylerythritol phosphate pathway II
JALI_8771	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
JALI_8771	PWY-622	starch biosynthesis
