CTLFINAL_00005	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CTLFINAL_00005	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CTLFINAL_00025	PWY-5913	TCA cycle VI (obligate autotrophs)
CTLFINAL_00025	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CTLFINAL_00025	PWY-6638	sulfolactate degradation III
CTLFINAL_00025	PWY-6642	(<i>R</i>)-cysteate degradation
CTLFINAL_00025	PWY-6643	coenzyme M biosynthesis II
CTLFINAL_00025	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CTLFINAL_00025	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CTLFINAL_00025	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CTLFINAL_00130	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CTLFINAL_00130	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CTLFINAL_00170	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CTLFINAL_00205	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLFINAL_00300	PWY-6823	molybdenum cofactor biosynthesis
CTLFINAL_00300	PWY-6891	thiazole biosynthesis II (Bacillus)
CTLFINAL_00300	PWY-6892	thiazole biosynthesis I (E. coli)
CTLFINAL_00300	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CTLFINAL_00330	PWY-1042	glycolysis IV (plant cytosol)
CTLFINAL_00330	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLFINAL_00330	PWY-6886	1-butanol autotrophic biosynthesis
CTLFINAL_00330	PWY-6901	superpathway of glucose and xylose degradation
CTLFINAL_00330	PWY-7003	glycerol degradation to butanol
CTLFINAL_00360	PWY-5669	phosphatidylethanolamine biosynthesis I
CTLFINAL_00420	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CTLFINAL_00440	PWY-5667	CDP-diacylglycerol biosynthesis I
CTLFINAL_00440	PWY-5981	CDP-diacylglycerol biosynthesis III
CTLFINAL_00455	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLFINAL_00485	PWY-1622	formaldehyde assimilation I (serine pathway)
CTLFINAL_00485	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLFINAL_00505	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CTLFINAL_00505	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CTLFINAL_00525	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CTLFINAL_00535	PWY-6167	flavin biosynthesis II (archaea)
CTLFINAL_00535	PWY-6168	flavin biosynthesis III (fungi)
CTLFINAL_00535	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CTLFINAL_00540	PWY-6167	flavin biosynthesis II (archaea)
CTLFINAL_00540	PWY-6168	flavin biosynthesis III (fungi)
CTLFINAL_00620	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CTLFINAL_00620	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CTLFINAL_00640	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CTLFINAL_00640	PWY-5723	Rubisco shunt
CTLFINAL_00640	PWY-6891	thiazole biosynthesis II (Bacillus)
CTLFINAL_00640	PWY-6892	thiazole biosynthesis I (E. coli)
CTLFINAL_00640	PWY-6901	superpathway of glucose and xylose degradation
CTLFINAL_00640	PWY-7560	methylerythritol phosphate pathway II
CTLFINAL_00675	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CTLFINAL_00675	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CTLFINAL_00680	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CTLFINAL_00680	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CTLFINAL_00680	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CTLFINAL_00685	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CTLFINAL_00685	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CTLFINAL_00700	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CTLFINAL_00700	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CTLFINAL_00700	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CTLFINAL_00700	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CTLFINAL_00705	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CTLFINAL_00705	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CTLFINAL_00725	PWY-2781	<i>cis</i>-zeatin biosynthesis
CTLFINAL_00730	PWY-5198	factor 420 biosynthesis
CTLFINAL_00890	PWY-5269	cardiolipin biosynthesis II
CTLFINAL_00890	PWY-5668	cardiolipin biosynthesis I
CTLFINAL_00895	PWY-622	starch biosynthesis
CTLFINAL_00925	PWY-7560	methylerythritol phosphate pathway II
CTLFINAL_00945	PWY-5667	CDP-diacylglycerol biosynthesis I
CTLFINAL_00945	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
CTLFINAL_01005	PWY-6749	CMP-legionaminate biosynthesis I
CTLFINAL_01010	PWY-6749	CMP-legionaminate biosynthesis I
CTLFINAL_01040	PWY-5392	reductive TCA cycle II
CTLFINAL_01040	PWY-5537	pyruvate fermentation to acetate V
CTLFINAL_01040	PWY-5538	pyruvate fermentation to acetate VI
CTLFINAL_01040	PWY-5690	TCA cycle II (plants and fungi)
CTLFINAL_01040	PWY-5913	TCA cycle VI (obligate autotrophs)
CTLFINAL_01040	PWY-6728	methylaspartate cycle
CTLFINAL_01040	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CTLFINAL_01040	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CTLFINAL_01045	PWY-5392	reductive TCA cycle II
CTLFINAL_01045	PWY-5537	pyruvate fermentation to acetate V
CTLFINAL_01045	PWY-5538	pyruvate fermentation to acetate VI
CTLFINAL_01045	PWY-5690	TCA cycle II (plants and fungi)
CTLFINAL_01045	PWY-5913	TCA cycle VI (obligate autotrophs)
CTLFINAL_01045	PWY-6728	methylaspartate cycle
CTLFINAL_01045	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CTLFINAL_01045	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CTLFINAL_01070	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CTLFINAL_01070	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLFINAL_01070	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CTLFINAL_01070	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CTLFINAL_01070	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLFINAL_01070	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLFINAL_01070	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLFINAL_01070	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CTLFINAL_01075	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CTLFINAL_01075	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLFINAL_01075	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CTLFINAL_01075	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CTLFINAL_01075	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLFINAL_01075	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLFINAL_01075	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLFINAL_01075	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CTLFINAL_01090	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CTLFINAL_01090	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CTLFINAL_01230	PWY-5392	reductive TCA cycle II
CTLFINAL_01230	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CTLFINAL_01230	PWY-5690	TCA cycle II (plants and fungi)
CTLFINAL_01230	PWY-5913	TCA cycle VI (obligate autotrophs)
CTLFINAL_01230	PWY-6728	methylaspartate cycle
CTLFINAL_01230	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CTLFINAL_01230	PWY-7254	TCA cycle VII (acetate-producers)
CTLFINAL_01230	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CTLFINAL_01250	PWY-7560	methylerythritol phosphate pathway II
CTLFINAL_01300	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
CTLFINAL_01300	PWY-622	starch biosynthesis
CTLFINAL_01365	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CTLFINAL_01495	PWY-6829	tRNA methylation (yeast)
CTLFINAL_01495	PWY-7285	methylwyosine biosynthesis
CTLFINAL_01495	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CTLFINAL_01510	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CTLFINAL_01550	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLFINAL_01590	PWY-5988	wound-induced proteolysis I
CTLFINAL_01590	PWY-6018	seed germination protein turnover
CTLFINAL_01640	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CTLFINAL_01645	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CTLFINAL_01655	PWY-7560	methylerythritol phosphate pathway II
CTLFINAL_01730	PWY-7560	methylerythritol phosphate pathway II
CTLFINAL_01765	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CTLFINAL_01765	PWY-2201	folate transformations I
CTLFINAL_01765	PWY-3841	folate transformations II
CTLFINAL_01765	PWY-5030	L-histidine degradation III
CTLFINAL_01765	PWY-5497	purine nucleobases degradation II (anaerobic)
CTLFINAL_01765	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CTLFINAL_01805	PWY-5941	glycogen degradation II (eukaryotic)
CTLFINAL_01805	PWY-6724	starch degradation II
CTLFINAL_01805	PWY-6737	starch degradation V
CTLFINAL_01805	PWY-7238	sucrose biosynthesis II
CTLFINAL_01835	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CTLFINAL_01835	PWY-6167	flavin biosynthesis II (archaea)
CTLFINAL_01835	PWY-6168	flavin biosynthesis III (fungi)
CTLFINAL_01870	PWY-6012	acyl carrier protein metabolism I
CTLFINAL_01870	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CTLFINAL_01910	PWY-5663	tetrahydrobiopterin biosynthesis I
CTLFINAL_01910	PWY-5664	tetrahydrobiopterin biosynthesis II
CTLFINAL_01910	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CTLFINAL_01910	PWY-6703	preQ<sub>0</sub> biosynthesis
CTLFINAL_01910	PWY-6983	tetrahydrobiopterin biosynthesis III
CTLFINAL_01910	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CTLFINAL_01980	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CTLFINAL_01980	PWY-5723	Rubisco shunt
CTLFINAL_02020	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLFINAL_02070	PWY-7533	gliotoxin biosynthesis
CTLFINAL_02290	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CTLFINAL_02290	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CTLFINAL_02295	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CTLFINAL_02295	PWY-7177	UTP and CTP dephosphorylation II
CTLFINAL_02295	PWY-7185	UTP and CTP dephosphorylation I
CTLFINAL_02305	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CTLFINAL_02310	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CTLFINAL_02310	PWY-6855	chitin degradation I (archaea)
CTLFINAL_02310	PWY-6906	chitin derivatives degradation
CTLFINAL_02320	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CTLFINAL_02320	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLFINAL_02320	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLFINAL_02320	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CTLFINAL_02320	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CTLFINAL_02320	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CTLFINAL_02345	PWY-6700	queuosine biosynthesis
CTLFINAL_02405	PWY-1042	glycolysis IV (plant cytosol)
CTLFINAL_02405	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CTLFINAL_02405	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLFINAL_02405	PWY-7385	1,3-propanediol biosynthesis (engineered)
CTLFINAL_02415	PWY-1042	glycolysis IV (plant cytosol)
CTLFINAL_02415	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CTLFINAL_02415	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLFINAL_02415	PWY-7385	1,3-propanediol biosynthesis (engineered)
CTLFINAL_02430	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CTLFINAL_02445	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CTLFINAL_02445	PWY-5723	Rubisco shunt
CTLFINAL_02470	PWY-5381	pyridine nucleotide cycling (plants)
CTLFINAL_02470	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CTLFINAL_02470	PWY-6596	adenosine nucleotides degradation I
CTLFINAL_02470	PWY-6606	guanosine nucleotides degradation II
CTLFINAL_02470	PWY-6607	guanosine nucleotides degradation I
CTLFINAL_02470	PWY-6608	guanosine nucleotides degradation III
CTLFINAL_02470	PWY-7185	UTP and CTP dephosphorylation I
CTLFINAL_02570	PWY-5367	petroselinate biosynthesis
CTLFINAL_02570	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CTLFINAL_02570	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CTLFINAL_02570	PWY-5989	stearate biosynthesis II (bacteria and plants)
CTLFINAL_02570	PWY-5994	palmitate biosynthesis I (animals and fungi)
CTLFINAL_02570	PWY-6113	superpathway of mycolate biosynthesis
CTLFINAL_02570	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CTLFINAL_02570	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CTLFINAL_02570	PWY-6951	CTLFINAL_02570|fabG|YP_007852455.1|GeneID:15330827
CTLFINAL_02570	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
CTLFINAL_02570	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CTLFINAL_02570	PWYG-321	mycolate biosynthesis
CTLFINAL_02575	PWY-4381	fatty acid biosynthesis initiation I
CTLFINAL_02575	PWY-6799	fatty acid biosynthesis (plant mitochondria)
CTLFINAL_02575	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CTLFINAL_02580	PWY-4381	fatty acid biosynthesis initiation I
CTLFINAL_02625	PWY-5941	glycogen degradation II (eukaryotic)
CTLFINAL_02625	PWY-622	starch biosynthesis
CTLFINAL_02625	PWY-6731	starch degradation III
CTLFINAL_02625	PWY-6737	starch degradation V
CTLFINAL_02625	PWY-7238	sucrose biosynthesis II
CTLFINAL_02675	PWY-6823	molybdenum cofactor biosynthesis
CTLFINAL_02675	PWY-6891	thiazole biosynthesis II (Bacillus)
CTLFINAL_02675	PWY-6892	thiazole biosynthesis I (E. coli)
CTLFINAL_02675	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CTLFINAL_02715	PWY-4381	fatty acid biosynthesis initiation I
CTLFINAL_02715	PWY-5743	3-hydroxypropanoate cycle
CTLFINAL_02715	PWY-5744	glyoxylate assimilation
CTLFINAL_02715	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CTLFINAL_02715	PWY-6679	jadomycin biosynthesis
CTLFINAL_02715	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CTLFINAL_02810	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CTLFINAL_02810	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CTLFINAL_02845	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CTLFINAL_02845	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLFINAL_02845	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLFINAL_02845	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CTLFINAL_02850	PWY-4381	fatty acid biosynthesis initiation I
CTLFINAL_02850	PWY-5743	3-hydroxypropanoate cycle
CTLFINAL_02850	PWY-5744	glyoxylate assimilation
CTLFINAL_02850	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CTLFINAL_02850	PWY-6679	jadomycin biosynthesis
CTLFINAL_02850	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CTLFINAL_02855	PWY-6854	ethylene biosynthesis III (microbes)
CTLFINAL_02860	PWY-6749	CMP-legionaminate biosynthesis I
CTLFINAL_02880	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CTLFINAL_02880	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CTLFINAL_02920	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLFINAL_02925	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLFINAL_02950	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CTLFINAL_02950	PWY-5723	Rubisco shunt
CTLFINAL_03035	PWY-1042	glycolysis IV (plant cytosol)
CTLFINAL_03035	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLFINAL_03035	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CTLFINAL_03035	PWY-7003	glycerol degradation to butanol
CTLFINAL_03055	PWY-6891	thiazole biosynthesis II (Bacillus)
CTLFINAL_03055	PWY-6892	thiazole biosynthesis I (E. coli)
CTLFINAL_03055	PWY-7560	methylerythritol phosphate pathway II
CTLFINAL_03060	PWY-1042	glycolysis IV (plant cytosol)
CTLFINAL_03060	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CTLFINAL_03060	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLFINAL_03060	PWY-5723	Rubisco shunt
CTLFINAL_03060	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CTLFINAL_03060	PWY-6886	1-butanol autotrophic biosynthesis
CTLFINAL_03060	PWY-6901	superpathway of glucose and xylose degradation
CTLFINAL_03060	PWY-7003	glycerol degradation to butanol
CTLFINAL_03060	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CTLFINAL_03060	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CTLFINAL_03220	PWY-2941	L-lysine biosynthesis II
CTLFINAL_03220	PWY-2942	L-lysine biosynthesis III
CTLFINAL_03220	PWY-5097	L-lysine biosynthesis VI
CTLFINAL_03225	PWY-2941	L-lysine biosynthesis II
CTLFINAL_03225	PWY-2942	L-lysine biosynthesis III
CTLFINAL_03225	PWY-5097	L-lysine biosynthesis VI
CTLFINAL_03225	PWY-6559	spermidine biosynthesis II
CTLFINAL_03225	PWY-6562	norspermidine biosynthesis
CTLFINAL_03225	PWY-7153	grixazone biosynthesis
CTLFINAL_03230	PWY-2941	L-lysine biosynthesis II
CTLFINAL_03230	PWY-2942	L-lysine biosynthesis III
CTLFINAL_03230	PWY-5097	L-lysine biosynthesis VI
CTLFINAL_03230	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CTLFINAL_03230	PWY-6559	spermidine biosynthesis II
CTLFINAL_03230	PWY-6562	norspermidine biosynthesis
CTLFINAL_03230	PWY-7153	grixazone biosynthesis
CTLFINAL_03230	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CTLFINAL_03235	PWY-2941	L-lysine biosynthesis II
CTLFINAL_03235	PWY-2942	L-lysine biosynthesis III
CTLFINAL_03235	PWY-5097	L-lysine biosynthesis VI
CTLFINAL_03245	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CTLFINAL_03250	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CTLFINAL_03255	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CTLFINAL_03260	PWY-6164	3-dehydroquinate biosynthesis I
CTLFINAL_03265	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CTLFINAL_03265	PWY-6416	quinate degradation II
CTLFINAL_03265	PWY-6707	gallate biosynthesis
CTLFINAL_03280	PWY-40	putrescine biosynthesis I
CTLFINAL_03280	PWY-43	putrescine biosynthesis II
CTLFINAL_03280	PWY-6305	putrescine biosynthesis IV
CTLFINAL_03280	PWY-6834	spermidine biosynthesis III
CTLFINAL_03300	PWY-1622	formaldehyde assimilation I (serine pathway)
CTLFINAL_03300	PWY-5392	reductive TCA cycle II
CTLFINAL_03300	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CTLFINAL_03300	PWY-5690	TCA cycle II (plants and fungi)
CTLFINAL_03300	PWY-5913	TCA cycle VI (obligate autotrophs)
CTLFINAL_03300	PWY-6728	methylaspartate cycle
CTLFINAL_03300	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CTLFINAL_03300	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CTLFINAL_03300	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CTLFINAL_03310	PWY-3801	sucrose degradation II (sucrose synthase)
CTLFINAL_03310	PWY-5054	sorbitol biosynthesis I
CTLFINAL_03310	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CTLFINAL_03310	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CTLFINAL_03310	PWY-5659	GDP-mannose biosynthesis
CTLFINAL_03310	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CTLFINAL_03310	PWY-621	sucrose degradation III (sucrose invertase)
CTLFINAL_03310	PWY-622	starch biosynthesis
CTLFINAL_03310	PWY-6531	mannitol cycle
CTLFINAL_03310	PWY-6981	chitin biosynthesis
CTLFINAL_03310	PWY-7238	sucrose biosynthesis II
CTLFINAL_03310	PWY-7347	sucrose biosynthesis III
CTLFINAL_03310	PWY-7385	1,3-propanediol biosynthesis (engineered)
CTLFINAL_03330	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CTLFINAL_03330	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CTLFINAL_03330	PWY-6164	3-dehydroquinate biosynthesis I
CTLFINAL_03375	PWY-5097	L-lysine biosynthesis VI
CTLFINAL_03455	PWY-6167	flavin biosynthesis II (archaea)
CTLFINAL_03455	PWY-6168	flavin biosynthesis III (fungi)
CTLFINAL_03455	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLFINAL_03570	PWY-5198	factor 420 biosynthesis
CTLFINAL_03580	PWY-5839	menaquinol-7 biosynthesis
CTLFINAL_03580	PWY-5844	menaquinol-9 biosynthesis
CTLFINAL_03580	PWY-5849	menaquinol-6 biosynthesis
CTLFINAL_03580	PWY-5890	menaquinol-10 biosynthesis
CTLFINAL_03580	PWY-5891	menaquinol-11 biosynthesis
CTLFINAL_03580	PWY-5892	menaquinol-12 biosynthesis
CTLFINAL_03580	PWY-5895	menaquinol-13 biosynthesis
CTLFINAL_03590	PWY-2941	L-lysine biosynthesis II
CTLFINAL_03590	PWY-5097	L-lysine biosynthesis VI
CTLFINAL_03600	PWY-1622	formaldehyde assimilation I (serine pathway)
CTLFINAL_03600	PWY-181	photorespiration
CTLFINAL_03600	PWY-2161	folate polyglutamylation
CTLFINAL_03600	PWY-2201	folate transformations I
CTLFINAL_03600	PWY-3661	glycine betaine degradation I
CTLFINAL_03600	PWY-3661-1	glycine betaine degradation II (mammalian)
CTLFINAL_03600	PWY-3841	folate transformations II
CTLFINAL_03600	PWY-5497	purine nucleobases degradation II (anaerobic)
CTLFINAL_03610	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CTLFINAL_03610	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CTLFINAL_03615	PWY-7560	methylerythritol phosphate pathway II
CTLFINAL_03675	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CTLFINAL_03720	PWY-7205	CMP phosphorylation
CTLFINAL_03735	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CTLFINAL_03735	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CTLFINAL_03770	PWY-7560	methylerythritol phosphate pathway II
CTLFINAL_03920	PWY-622	starch biosynthesis
CTLFINAL_03930	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLFINAL_03955	PWY-5269	cardiolipin biosynthesis II
CTLFINAL_03955	PWY-5668	cardiolipin biosynthesis I
CTLFINAL_03975	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CTLFINAL_03975	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CTLFINAL_03980	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CTLFINAL_03980	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CTLFINAL_03980	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLFINAL_03980	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLFINAL_03980	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CTLFINAL_03980	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CTLFINAL_03980	PWY-7205	CMP phosphorylation
CTLFINAL_03980	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CTLFINAL_03980	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLFINAL_03980	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CTLFINAL_03980	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLFINAL_03980	PWY-7224	purine deoxyribonucleosides salvage
CTLFINAL_03980	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLFINAL_03980	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CTLFINAL_04005	PWY-1042	glycolysis IV (plant cytosol)
CTLFINAL_04005	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLFINAL_04005	PWY-6901	superpathway of glucose and xylose degradation
CTLFINAL_04005	PWY-7003	glycerol degradation to butanol
CTLFINAL_04145	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CTLFINAL_04145	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CTLFINAL_04145	PWY-5989	stearate biosynthesis II (bacteria and plants)
CTLFINAL_04145	PWY-5994	palmitate biosynthesis I (animals and fungi)
CTLFINAL_04145	PWY-6113	superpathway of mycolate biosynthesis
CTLFINAL_04145	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CTLFINAL_04145	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CTLFINAL_04145	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CTLFINAL_04145	PWYG-321	mycolate biosynthesis
CTLFINAL_04275	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CTLFINAL_04275	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CTLFINAL_04280	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CTLFINAL_04280	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CTLFINAL_04280	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CTLFINAL_04435	PWY-1042	glycolysis IV (plant cytosol)
CTLFINAL_04435	PWY-1622	formaldehyde assimilation I (serine pathway)
CTLFINAL_04435	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CTLFINAL_04435	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLFINAL_04435	PWY-5723	Rubisco shunt
CTLFINAL_04435	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CTLFINAL_04435	PWY-6886	1-butanol autotrophic biosynthesis
CTLFINAL_04435	PWY-6901	superpathway of glucose and xylose degradation
CTLFINAL_04435	PWY-7003	glycerol degradation to butanol
CTLFINAL_04435	PWY-7124	ethylene biosynthesis V (engineered)
CTLFINAL_04435	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CTLFINAL_04455	PWY-3781	aerobic respiration I (cytochrome c)
CTLFINAL_04455	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CTLFINAL_04455	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CTLFINAL_04455	PWY-5690	TCA cycle II (plants and fungi)
CTLFINAL_04455	PWY-6728	methylaspartate cycle
CTLFINAL_04455	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CTLFINAL_04455	PWY-7254	TCA cycle VII (acetate-producers)
CTLFINAL_04455	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CTLFINAL_04460	PWY-3781	aerobic respiration I (cytochrome c)
CTLFINAL_04460	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CTLFINAL_04460	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CTLFINAL_04460	PWY-5690	TCA cycle II (plants and fungi)
CTLFINAL_04460	PWY-6728	methylaspartate cycle
CTLFINAL_04460	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CTLFINAL_04460	PWY-7254	TCA cycle VII (acetate-producers)
CTLFINAL_04460	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CTLFINAL_04540	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CTLFINAL_04570	PWY-5199	factor 420 polyglutamylation
CTLFINAL_04575	PWY-3841	folate transformations II
CTLFINAL_04575	PWY-6614	tetrahydrofolate biosynthesis
CTLFINAL_04580	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CTLFINAL_04580	PWY-6148	tetrahydromethanopterin biosynthesis
CTLFINAL_04580	PWY-6614	tetrahydrofolate biosynthesis
CTLFINAL_04580	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CTLFINAL_04580	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CTLFINAL_04585	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CTLFINAL_04585	PWY-6148	tetrahydromethanopterin biosynthesis
CTLFINAL_04585	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CTLFINAL_04585	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CTLFINAL_04665	PWY-3221	dTDP-L-rhamnose biosynthesis II
CTLFINAL_04665	PWY-6808	dTDP-D-forosamine biosynthesis
CTLFINAL_04665	PWY-6942	dTDP-D-desosamine biosynthesis
CTLFINAL_04665	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CTLFINAL_04665	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CTLFINAL_04665	PWY-6974	dTDP-L-olivose biosynthesis
CTLFINAL_04665	PWY-6976	dTDP-L-mycarose biosynthesis
CTLFINAL_04665	PWY-7104	dTDP-L-megosamine biosynthesis
CTLFINAL_04665	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CTLFINAL_04665	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CTLFINAL_04665	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CTLFINAL_04665	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CTLFINAL_04665	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CTLFINAL_04665	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CTLFINAL_04665	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CTLFINAL_04665	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CTLFINAL_04680	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
