CTLINITIAL_00005	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CTLINITIAL_00005	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CTLINITIAL_00025	PWY-5913	TCA cycle VI (obligate autotrophs)
CTLINITIAL_00025	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CTLINITIAL_00025	PWY-6638	sulfolactate degradation III
CTLINITIAL_00025	PWY-6642	(<i>R</i>)-cysteate degradation
CTLINITIAL_00025	PWY-6643	coenzyme M biosynthesis II
CTLINITIAL_00025	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CTLINITIAL_00025	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CTLINITIAL_00025	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CTLINITIAL_00130	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CTLINITIAL_00130	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CTLINITIAL_00170	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CTLINITIAL_00205	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLINITIAL_00300	PWY-6823	molybdenum cofactor biosynthesis
CTLINITIAL_00300	PWY-6891	thiazole biosynthesis II (Bacillus)
CTLINITIAL_00300	PWY-6892	thiazole biosynthesis I (E. coli)
CTLINITIAL_00300	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CTLINITIAL_00330	PWY-1042	glycolysis IV (plant cytosol)
CTLINITIAL_00330	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLINITIAL_00330	PWY-6886	1-butanol autotrophic biosynthesis
CTLINITIAL_00330	PWY-6901	superpathway of glucose and xylose degradation
CTLINITIAL_00330	PWY-7003	glycerol degradation to butanol
CTLINITIAL_00360	PWY-5669	phosphatidylethanolamine biosynthesis I
CTLINITIAL_00420	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CTLINITIAL_00440	PWY-5667	CDP-diacylglycerol biosynthesis I
CTLINITIAL_00440	PWY-5981	CDP-diacylglycerol biosynthesis III
CTLINITIAL_00455	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLINITIAL_00485	PWY-1622	formaldehyde assimilation I (serine pathway)
CTLINITIAL_00485	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLINITIAL_00505	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CTLINITIAL_00505	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CTLINITIAL_00525	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CTLINITIAL_00535	PWY-6167	flavin biosynthesis II (archaea)
CTLINITIAL_00535	PWY-6168	flavin biosynthesis III (fungi)
CTLINITIAL_00535	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CTLINITIAL_00540	PWY-6167	flavin biosynthesis II (archaea)
CTLINITIAL_00540	PWY-6168	flavin biosynthesis III (fungi)
CTLINITIAL_00620	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CTLINITIAL_00620	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CTLINITIAL_00640	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CTLINITIAL_00640	PWY-5723	Rubisco shunt
CTLINITIAL_00640	PWY-6891	thiazole biosynthesis II (Bacillus)
CTLINITIAL_00640	PWY-6892	thiazole biosynthesis I (E. coli)
CTLINITIAL_00640	PWY-6901	superpathway of glucose and xylose degradation
CTLINITIAL_00640	PWY-7560	methylerythritol phosphate pathway II
CTLINITIAL_00675	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CTLINITIAL_00675	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CTLINITIAL_00680	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CTLINITIAL_00680	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CTLINITIAL_00680	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CTLINITIAL_00685	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CTLINITIAL_00685	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CTLINITIAL_00700	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CTLINITIAL_00700	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CTLINITIAL_00700	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CTLINITIAL_00700	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CTLINITIAL_00705	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CTLINITIAL_00705	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CTLINITIAL_00725	PWY-2781	<i>cis</i>-zeatin biosynthesis
CTLINITIAL_00730	PWY-5198	factor 420 biosynthesis
CTLINITIAL_00890	PWY-5269	cardiolipin biosynthesis II
CTLINITIAL_00890	PWY-5668	cardiolipin biosynthesis I
CTLINITIAL_00895	PWY-622	starch biosynthesis
CTLINITIAL_00925	PWY-7560	methylerythritol phosphate pathway II
CTLINITIAL_00945	PWY-5667	CDP-diacylglycerol biosynthesis I
CTLINITIAL_00945	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
CTLINITIAL_01005	PWY-6749	CMP-legionaminate biosynthesis I
CTLINITIAL_01010	PWY-6749	CMP-legionaminate biosynthesis I
CTLINITIAL_01040	PWY-5392	reductive TCA cycle II
CTLINITIAL_01040	PWY-5537	pyruvate fermentation to acetate V
CTLINITIAL_01040	PWY-5538	pyruvate fermentation to acetate VI
CTLINITIAL_01040	PWY-5690	TCA cycle II (plants and fungi)
CTLINITIAL_01040	PWY-5913	TCA cycle VI (obligate autotrophs)
CTLINITIAL_01040	PWY-6728	methylaspartate cycle
CTLINITIAL_01040	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CTLINITIAL_01040	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CTLINITIAL_01045	PWY-5392	reductive TCA cycle II
CTLINITIAL_01045	PWY-5537	pyruvate fermentation to acetate V
CTLINITIAL_01045	PWY-5538	pyruvate fermentation to acetate VI
CTLINITIAL_01045	PWY-5690	TCA cycle II (plants and fungi)
CTLINITIAL_01045	PWY-5913	TCA cycle VI (obligate autotrophs)
CTLINITIAL_01045	PWY-6728	methylaspartate cycle
CTLINITIAL_01045	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CTLINITIAL_01045	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CTLINITIAL_01070	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CTLINITIAL_01070	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLINITIAL_01070	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CTLINITIAL_01070	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CTLINITIAL_01070	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLINITIAL_01070	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLINITIAL_01070	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLINITIAL_01070	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CTLINITIAL_01075	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CTLINITIAL_01075	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLINITIAL_01075	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CTLINITIAL_01075	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CTLINITIAL_01075	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLINITIAL_01075	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLINITIAL_01075	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLINITIAL_01075	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CTLINITIAL_01090	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CTLINITIAL_01090	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CTLINITIAL_01230	PWY-5392	reductive TCA cycle II
CTLINITIAL_01230	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CTLINITIAL_01230	PWY-5690	TCA cycle II (plants and fungi)
CTLINITIAL_01230	PWY-5913	TCA cycle VI (obligate autotrophs)
CTLINITIAL_01230	PWY-6728	methylaspartate cycle
CTLINITIAL_01230	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CTLINITIAL_01230	PWY-7254	TCA cycle VII (acetate-producers)
CTLINITIAL_01230	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CTLINITIAL_01250	PWY-7560	methylerythritol phosphate pathway II
CTLINITIAL_01300	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
CTLINITIAL_01300	PWY-622	starch biosynthesis
CTLINITIAL_01365	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CTLINITIAL_01495	PWY-6829	tRNA methylation (yeast)
CTLINITIAL_01495	PWY-7285	methylwyosine biosynthesis
CTLINITIAL_01495	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CTLINITIAL_01510	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CTLINITIAL_01550	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLINITIAL_01590	PWY-5988	wound-induced proteolysis I
CTLINITIAL_01590	PWY-6018	seed germination protein turnover
CTLINITIAL_01640	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CTLINITIAL_01645	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CTLINITIAL_01655	PWY-7560	methylerythritol phosphate pathway II
CTLINITIAL_01730	PWY-7560	methylerythritol phosphate pathway II
CTLINITIAL_01765	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CTLINITIAL_01765	PWY-2201	folate transformations I
CTLINITIAL_01765	PWY-3841	folate transformations II
CTLINITIAL_01765	PWY-5030	L-histidine degradation III
CTLINITIAL_01765	PWY-5497	purine nucleobases degradation II (anaerobic)
CTLINITIAL_01765	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CTLINITIAL_01805	PWY-5941	glycogen degradation II (eukaryotic)
CTLINITIAL_01805	PWY-6724	starch degradation II
CTLINITIAL_01805	PWY-6737	starch degradation V
CTLINITIAL_01805	PWY-7238	sucrose biosynthesis II
CTLINITIAL_01835	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CTLINITIAL_01835	PWY-6167	flavin biosynthesis II (archaea)
CTLINITIAL_01835	PWY-6168	flavin biosynthesis III (fungi)
CTLINITIAL_01870	PWY-6012	acyl carrier protein metabolism I
CTLINITIAL_01870	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CTLINITIAL_01910	PWY-5663	tetrahydrobiopterin biosynthesis I
CTLINITIAL_01910	PWY-5664	tetrahydrobiopterin biosynthesis II
CTLINITIAL_01910	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CTLINITIAL_01910	PWY-6703	preQ<sub>0</sub> biosynthesis
CTLINITIAL_01910	PWY-6983	tetrahydrobiopterin biosynthesis III
CTLINITIAL_01910	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CTLINITIAL_01980	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CTLINITIAL_01980	PWY-5723	Rubisco shunt
CTLINITIAL_02020	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLINITIAL_02070	PWY-7533	gliotoxin biosynthesis
CTLINITIAL_02285	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CTLINITIAL_02285	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CTLINITIAL_02290	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CTLINITIAL_02290	PWY-7177	UTP and CTP dephosphorylation II
CTLINITIAL_02290	PWY-7185	UTP and CTP dephosphorylation I
CTLINITIAL_02300	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CTLINITIAL_02305	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CTLINITIAL_02305	PWY-6855	chitin degradation I (archaea)
CTLINITIAL_02305	PWY-6906	chitin derivatives degradation
CTLINITIAL_02315	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CTLINITIAL_02315	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLINITIAL_02315	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLINITIAL_02315	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CTLINITIAL_02315	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CTLINITIAL_02315	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CTLINITIAL_02340	PWY-6700	queuosine biosynthesis
CTLINITIAL_02400	PWY-1042	glycolysis IV (plant cytosol)
CTLINITIAL_02400	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CTLINITIAL_02400	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLINITIAL_02400	PWY-7385	1,3-propanediol biosynthesis (engineered)
CTLINITIAL_02410	PWY-1042	glycolysis IV (plant cytosol)
CTLINITIAL_02410	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CTLINITIAL_02410	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLINITIAL_02410	PWY-7385	1,3-propanediol biosynthesis (engineered)
CTLINITIAL_02425	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CTLINITIAL_02440	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CTLINITIAL_02440	PWY-5723	Rubisco shunt
CTLINITIAL_02465	PWY-5381	pyridine nucleotide cycling (plants)
CTLINITIAL_02465	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CTLINITIAL_02465	PWY-6596	adenosine nucleotides degradation I
CTLINITIAL_02465	PWY-6606	guanosine nucleotides degradation II
CTLINITIAL_02465	PWY-6607	guanosine nucleotides degradation I
CTLINITIAL_02465	PWY-6608	guanosine nucleotides degradation III
CTLINITIAL_02465	PWY-7185	UTP and CTP dephosphorylation I
CTLINITIAL_02565	PWY-5367	petroselinate biosynthesis
CTLINITIAL_02565	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CTLINITIAL_02565	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CTLINITIAL_02565	PWY-5989	stearate biosynthesis II (bacteria and plants)
CTLINITIAL_02565	PWY-5994	palmitate biosynthesis I (animals and fungi)
CTLINITIAL_02565	PWY-6113	superpathway of mycolate biosynthesis
CTLINITIAL_02565	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CTLINITIAL_02565	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CTLINITIAL_02565	PWY-6951	CTLINITIAL_02565|fabG|YP_007851514.1|GeneID:15329841
CTLINITIAL_02565	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
CTLINITIAL_02565	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CTLINITIAL_02565	PWYG-321	mycolate biosynthesis
CTLINITIAL_02570	PWY-4381	fatty acid biosynthesis initiation I
CTLINITIAL_02570	PWY-6799	fatty acid biosynthesis (plant mitochondria)
CTLINITIAL_02570	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CTLINITIAL_02575	PWY-4381	fatty acid biosynthesis initiation I
CTLINITIAL_02620	PWY-5941	glycogen degradation II (eukaryotic)
CTLINITIAL_02620	PWY-622	starch biosynthesis
CTLINITIAL_02620	PWY-6731	starch degradation III
CTLINITIAL_02620	PWY-6737	starch degradation V
CTLINITIAL_02620	PWY-7238	sucrose biosynthesis II
CTLINITIAL_02670	PWY-6823	molybdenum cofactor biosynthesis
CTLINITIAL_02670	PWY-6891	thiazole biosynthesis II (Bacillus)
CTLINITIAL_02670	PWY-6892	thiazole biosynthesis I (E. coli)
CTLINITIAL_02670	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CTLINITIAL_02710	PWY-4381	fatty acid biosynthesis initiation I
CTLINITIAL_02710	PWY-5743	3-hydroxypropanoate cycle
CTLINITIAL_02710	PWY-5744	glyoxylate assimilation
CTLINITIAL_02710	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CTLINITIAL_02710	PWY-6679	jadomycin biosynthesis
CTLINITIAL_02710	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CTLINITIAL_02805	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CTLINITIAL_02805	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CTLINITIAL_02840	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CTLINITIAL_02840	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLINITIAL_02840	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLINITIAL_02840	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CTLINITIAL_02845	PWY-4381	fatty acid biosynthesis initiation I
CTLINITIAL_02845	PWY-5743	3-hydroxypropanoate cycle
CTLINITIAL_02845	PWY-5744	glyoxylate assimilation
CTLINITIAL_02845	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CTLINITIAL_02845	PWY-6679	jadomycin biosynthesis
CTLINITIAL_02845	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CTLINITIAL_02850	PWY-6854	ethylene biosynthesis III (microbes)
CTLINITIAL_02855	PWY-6749	CMP-legionaminate biosynthesis I
CTLINITIAL_02875	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CTLINITIAL_02875	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CTLINITIAL_02915	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLINITIAL_02920	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLINITIAL_02945	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CTLINITIAL_02945	PWY-5723	Rubisco shunt
CTLINITIAL_03030	PWY-1042	glycolysis IV (plant cytosol)
CTLINITIAL_03030	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLINITIAL_03030	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CTLINITIAL_03030	PWY-7003	glycerol degradation to butanol
CTLINITIAL_03050	PWY-6891	thiazole biosynthesis II (Bacillus)
CTLINITIAL_03050	PWY-6892	thiazole biosynthesis I (E. coli)
CTLINITIAL_03050	PWY-7560	methylerythritol phosphate pathway II
CTLINITIAL_03055	PWY-1042	glycolysis IV (plant cytosol)
CTLINITIAL_03055	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CTLINITIAL_03055	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLINITIAL_03055	PWY-5723	Rubisco shunt
CTLINITIAL_03055	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CTLINITIAL_03055	PWY-6886	1-butanol autotrophic biosynthesis
CTLINITIAL_03055	PWY-6901	superpathway of glucose and xylose degradation
CTLINITIAL_03055	PWY-7003	glycerol degradation to butanol
CTLINITIAL_03055	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CTLINITIAL_03055	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CTLINITIAL_03215	PWY-2941	L-lysine biosynthesis II
CTLINITIAL_03215	PWY-2942	L-lysine biosynthesis III
CTLINITIAL_03215	PWY-5097	L-lysine biosynthesis VI
CTLINITIAL_03220	PWY-2941	L-lysine biosynthesis II
CTLINITIAL_03220	PWY-2942	L-lysine biosynthesis III
CTLINITIAL_03220	PWY-5097	L-lysine biosynthesis VI
CTLINITIAL_03220	PWY-6559	spermidine biosynthesis II
CTLINITIAL_03220	PWY-6562	norspermidine biosynthesis
CTLINITIAL_03220	PWY-7153	grixazone biosynthesis
CTLINITIAL_03225	PWY-2941	L-lysine biosynthesis II
CTLINITIAL_03225	PWY-2942	L-lysine biosynthesis III
CTLINITIAL_03225	PWY-5097	L-lysine biosynthesis VI
CTLINITIAL_03225	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CTLINITIAL_03225	PWY-6559	spermidine biosynthesis II
CTLINITIAL_03225	PWY-6562	norspermidine biosynthesis
CTLINITIAL_03225	PWY-7153	grixazone biosynthesis
CTLINITIAL_03225	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CTLINITIAL_03230	PWY-2941	L-lysine biosynthesis II
CTLINITIAL_03230	PWY-2942	L-lysine biosynthesis III
CTLINITIAL_03230	PWY-5097	L-lysine biosynthesis VI
CTLINITIAL_03240	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CTLINITIAL_03245	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CTLINITIAL_03250	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CTLINITIAL_03255	PWY-6164	3-dehydroquinate biosynthesis I
CTLINITIAL_03260	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CTLINITIAL_03260	PWY-6416	quinate degradation II
CTLINITIAL_03260	PWY-6707	gallate biosynthesis
CTLINITIAL_03275	PWY-40	putrescine biosynthesis I
CTLINITIAL_03275	PWY-43	putrescine biosynthesis II
CTLINITIAL_03275	PWY-6305	putrescine biosynthesis IV
CTLINITIAL_03275	PWY-6834	spermidine biosynthesis III
CTLINITIAL_03295	PWY-1622	formaldehyde assimilation I (serine pathway)
CTLINITIAL_03295	PWY-5392	reductive TCA cycle II
CTLINITIAL_03295	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CTLINITIAL_03295	PWY-5690	TCA cycle II (plants and fungi)
CTLINITIAL_03295	PWY-5913	TCA cycle VI (obligate autotrophs)
CTLINITIAL_03295	PWY-6728	methylaspartate cycle
CTLINITIAL_03295	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CTLINITIAL_03295	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CTLINITIAL_03295	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CTLINITIAL_03305	PWY-3801	sucrose degradation II (sucrose synthase)
CTLINITIAL_03305	PWY-5054	sorbitol biosynthesis I
CTLINITIAL_03305	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CTLINITIAL_03305	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CTLINITIAL_03305	PWY-5659	GDP-mannose biosynthesis
CTLINITIAL_03305	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CTLINITIAL_03305	PWY-621	sucrose degradation III (sucrose invertase)
CTLINITIAL_03305	PWY-622	starch biosynthesis
CTLINITIAL_03305	PWY-6531	mannitol cycle
CTLINITIAL_03305	PWY-6981	chitin biosynthesis
CTLINITIAL_03305	PWY-7238	sucrose biosynthesis II
CTLINITIAL_03305	PWY-7347	sucrose biosynthesis III
CTLINITIAL_03305	PWY-7385	1,3-propanediol biosynthesis (engineered)
CTLINITIAL_03325	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CTLINITIAL_03325	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CTLINITIAL_03325	PWY-6164	3-dehydroquinate biosynthesis I
CTLINITIAL_03365	PWY-5097	L-lysine biosynthesis VI
CTLINITIAL_03445	PWY-6167	flavin biosynthesis II (archaea)
CTLINITIAL_03445	PWY-6168	flavin biosynthesis III (fungi)
CTLINITIAL_03445	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLINITIAL_03560	PWY-5198	factor 420 biosynthesis
CTLINITIAL_03570	PWY-5839	menaquinol-7 biosynthesis
CTLINITIAL_03570	PWY-5844	menaquinol-9 biosynthesis
CTLINITIAL_03570	PWY-5849	menaquinol-6 biosynthesis
CTLINITIAL_03570	PWY-5890	menaquinol-10 biosynthesis
CTLINITIAL_03570	PWY-5891	menaquinol-11 biosynthesis
CTLINITIAL_03570	PWY-5892	menaquinol-12 biosynthesis
CTLINITIAL_03570	PWY-5895	menaquinol-13 biosynthesis
CTLINITIAL_03580	PWY-2941	L-lysine biosynthesis II
CTLINITIAL_03580	PWY-5097	L-lysine biosynthesis VI
CTLINITIAL_03590	PWY-1622	formaldehyde assimilation I (serine pathway)
CTLINITIAL_03590	PWY-181	photorespiration
CTLINITIAL_03590	PWY-2161	folate polyglutamylation
CTLINITIAL_03590	PWY-2201	folate transformations I
CTLINITIAL_03590	PWY-3661	glycine betaine degradation I
CTLINITIAL_03590	PWY-3661-1	glycine betaine degradation II (mammalian)
CTLINITIAL_03590	PWY-3841	folate transformations II
CTLINITIAL_03590	PWY-5497	purine nucleobases degradation II (anaerobic)
CTLINITIAL_03600	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CTLINITIAL_03600	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CTLINITIAL_03605	PWY-7560	methylerythritol phosphate pathway II
CTLINITIAL_03665	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CTLINITIAL_03710	PWY-7205	CMP phosphorylation
CTLINITIAL_03725	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CTLINITIAL_03725	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CTLINITIAL_03760	PWY-7560	methylerythritol phosphate pathway II
CTLINITIAL_03910	PWY-622	starch biosynthesis
CTLINITIAL_03920	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLINITIAL_03945	PWY-5269	cardiolipin biosynthesis II
CTLINITIAL_03945	PWY-5668	cardiolipin biosynthesis I
CTLINITIAL_03970	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CTLINITIAL_03970	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CTLINITIAL_03975	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CTLINITIAL_03975	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CTLINITIAL_03975	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLINITIAL_03975	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLINITIAL_03975	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CTLINITIAL_03975	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CTLINITIAL_03975	PWY-7205	CMP phosphorylation
CTLINITIAL_03975	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CTLINITIAL_03975	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLINITIAL_03975	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CTLINITIAL_03975	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLINITIAL_03975	PWY-7224	purine deoxyribonucleosides salvage
CTLINITIAL_03975	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLINITIAL_03975	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CTLINITIAL_04000	PWY-1042	glycolysis IV (plant cytosol)
CTLINITIAL_04000	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLINITIAL_04000	PWY-6901	superpathway of glucose and xylose degradation
CTLINITIAL_04000	PWY-7003	glycerol degradation to butanol
CTLINITIAL_04140	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CTLINITIAL_04140	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CTLINITIAL_04140	PWY-5989	stearate biosynthesis II (bacteria and plants)
CTLINITIAL_04140	PWY-5994	palmitate biosynthesis I (animals and fungi)
CTLINITIAL_04140	PWY-6113	superpathway of mycolate biosynthesis
CTLINITIAL_04140	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CTLINITIAL_04140	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CTLINITIAL_04140	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CTLINITIAL_04140	PWYG-321	mycolate biosynthesis
CTLINITIAL_04270	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CTLINITIAL_04270	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CTLINITIAL_04275	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CTLINITIAL_04275	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CTLINITIAL_04275	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CTLINITIAL_04430	PWY-1042	glycolysis IV (plant cytosol)
CTLINITIAL_04430	PWY-1622	formaldehyde assimilation I (serine pathway)
CTLINITIAL_04430	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CTLINITIAL_04430	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLINITIAL_04430	PWY-5723	Rubisco shunt
CTLINITIAL_04430	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CTLINITIAL_04430	PWY-6886	1-butanol autotrophic biosynthesis
CTLINITIAL_04430	PWY-6901	superpathway of glucose and xylose degradation
CTLINITIAL_04430	PWY-7003	glycerol degradation to butanol
CTLINITIAL_04430	PWY-7124	ethylene biosynthesis V (engineered)
CTLINITIAL_04430	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CTLINITIAL_04450	PWY-3781	aerobic respiration I (cytochrome c)
CTLINITIAL_04450	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CTLINITIAL_04450	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CTLINITIAL_04450	PWY-5690	TCA cycle II (plants and fungi)
CTLINITIAL_04450	PWY-6728	methylaspartate cycle
CTLINITIAL_04450	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CTLINITIAL_04450	PWY-7254	TCA cycle VII (acetate-producers)
CTLINITIAL_04450	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CTLINITIAL_04455	PWY-3781	aerobic respiration I (cytochrome c)
CTLINITIAL_04455	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CTLINITIAL_04455	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CTLINITIAL_04455	PWY-5690	TCA cycle II (plants and fungi)
CTLINITIAL_04455	PWY-6728	methylaspartate cycle
CTLINITIAL_04455	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CTLINITIAL_04455	PWY-7254	TCA cycle VII (acetate-producers)
CTLINITIAL_04455	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CTLINITIAL_04535	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CTLINITIAL_04565	PWY-5199	factor 420 polyglutamylation
CTLINITIAL_04570	PWY-3841	folate transformations II
CTLINITIAL_04570	PWY-6614	tetrahydrofolate biosynthesis
CTLINITIAL_04575	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CTLINITIAL_04575	PWY-6148	tetrahydromethanopterin biosynthesis
CTLINITIAL_04575	PWY-6614	tetrahydrofolate biosynthesis
CTLINITIAL_04575	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CTLINITIAL_04575	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CTLINITIAL_04580	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CTLINITIAL_04580	PWY-6148	tetrahydromethanopterin biosynthesis
CTLINITIAL_04580	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CTLINITIAL_04580	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CTLINITIAL_04660	PWY-3221	dTDP-L-rhamnose biosynthesis II
CTLINITIAL_04660	PWY-6808	dTDP-D-forosamine biosynthesis
CTLINITIAL_04660	PWY-6942	dTDP-D-desosamine biosynthesis
CTLINITIAL_04660	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CTLINITIAL_04660	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CTLINITIAL_04660	PWY-6974	dTDP-L-olivose biosynthesis
CTLINITIAL_04660	PWY-6976	dTDP-L-mycarose biosynthesis
CTLINITIAL_04660	PWY-7104	dTDP-L-megosamine biosynthesis
CTLINITIAL_04660	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CTLINITIAL_04660	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CTLINITIAL_04660	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CTLINITIAL_04660	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CTLINITIAL_04660	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CTLINITIAL_04660	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CTLINITIAL_04660	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CTLINITIAL_04660	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CTLINITIAL_04675	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
