CTLon_0001	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CTLon_0001	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CTLon_0005	PWY-5913	TCA cycle VI (obligate autotrophs)
CTLon_0005	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CTLon_0005	PWY-6638	sulfolactate degradation III
CTLon_0005	PWY-6642	(<i>R</i>)-cysteate degradation
CTLon_0005	PWY-6643	coenzyme M biosynthesis II
CTLon_0005	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CTLon_0005	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CTLon_0005	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CTLon_0024	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CTLon_0024	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CTLon_0031	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CTLon_0038	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLon_0056	PWY-6823	molybdenum cofactor biosynthesis
CTLon_0056	PWY-6891	thiazole biosynthesis II (Bacillus)
CTLon_0056	PWY-6892	thiazole biosynthesis I (E. coli)
CTLon_0056	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CTLon_0062	PWY-1042	glycolysis IV (plant cytosol)
CTLon_0062	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLon_0062	PWY-6886	1-butanol autotrophic biosynthesis
CTLon_0062	PWY-6901	superpathway of glucose and xylose degradation
CTLon_0062	PWY-7003	glycerol degradation to butanol
CTLon_0068	PWY-5669	phosphatidylethanolamine biosynthesis I
CTLon_0079	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CTLon_0083	PWY-5667	CDP-diacylglycerol biosynthesis I
CTLon_0083	PWY-5981	CDP-diacylglycerol biosynthesis III
CTLon_0086	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLon_0091	PWY-1622	formaldehyde assimilation I (serine pathway)
CTLon_0091	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLon_0094	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CTLon_0094	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CTLon_0098	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CTLon_0100	PWY-6167	flavin biosynthesis II (archaea)
CTLon_0100	PWY-6168	flavin biosynthesis III (fungi)
CTLon_0100	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CTLon_0101	PWY-6167	flavin biosynthesis II (archaea)
CTLon_0101	PWY-6168	flavin biosynthesis III (fungi)
CTLon_0116	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CTLon_0116	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CTLon_0119	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CTLon_0119	PWY-5723	Rubisco shunt
CTLon_0119	PWY-6891	thiazole biosynthesis II (Bacillus)
CTLon_0119	PWY-6892	thiazole biosynthesis I (E. coli)
CTLon_0119	PWY-6901	superpathway of glucose and xylose degradation
CTLon_0119	PWY-7560	methylerythritol phosphate pathway II
CTLon_0125	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CTLon_0125	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CTLon_0126	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CTLon_0126	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CTLon_0126	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CTLon_0127	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CTLon_0127	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CTLon_0130	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CTLon_0130	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CTLon_0130	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CTLon_0130	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CTLon_0131	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CTLon_0131	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CTLon_0135	PWY-2781	<i>cis</i>-zeatin biosynthesis
CTLon_0136	PWY-5198	factor 420 biosynthesis
CTLon_0167	PWY-5269	cardiolipin biosynthesis II
CTLon_0167	PWY-5668	cardiolipin biosynthesis I
CTLon_0168	PWY-622	starch biosynthesis
CTLon_0174	PWY-7560	methylerythritol phosphate pathway II
CTLon_0177	PWY-5667	CDP-diacylglycerol biosynthesis I
CTLon_0177	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
CTLon_0187	PWY-6749	CMP-legionaminate biosynthesis I
CTLon_0188	PWY-6749	CMP-legionaminate biosynthesis I
CTLon_0193	PWY-5392	reductive TCA cycle II
CTLon_0193	PWY-5537	pyruvate fermentation to acetate V
CTLon_0193	PWY-5538	pyruvate fermentation to acetate VI
CTLon_0193	PWY-5690	TCA cycle II (plants and fungi)
CTLon_0193	PWY-5913	TCA cycle VI (obligate autotrophs)
CTLon_0193	PWY-6728	methylaspartate cycle
CTLon_0193	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CTLon_0193	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CTLon_0194	PWY-5392	reductive TCA cycle II
CTLon_0194	PWY-5537	pyruvate fermentation to acetate V
CTLon_0194	PWY-5538	pyruvate fermentation to acetate VI
CTLon_0194	PWY-5690	TCA cycle II (plants and fungi)
CTLon_0194	PWY-5913	TCA cycle VI (obligate autotrophs)
CTLon_0194	PWY-6728	methylaspartate cycle
CTLon_0194	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CTLon_0194	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CTLon_0199	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CTLon_0199	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLon_0199	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CTLon_0199	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CTLon_0199	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLon_0199	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLon_0199	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLon_0199	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CTLon_0200	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CTLon_0200	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLon_0200	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CTLon_0200	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CTLon_0200	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLon_0200	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLon_0200	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLon_0200	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CTLon_0203	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CTLon_0203	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CTLon_0234	PWY-7560	methylerythritol phosphate pathway II
CTLon_0241	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
CTLon_0241	PWY-622	starch biosynthesis
CTLon_0253	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CTLon_0277	PWY-6829	tRNA methylation (yeast)
CTLon_0277	PWY-7285	methylwyosine biosynthesis
CTLon_0277	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CTLon_0280	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CTLon_0289	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLon_0296	PWY-5988	wound-induced proteolysis I
CTLon_0296	PWY-6018	seed germination protein turnover
CTLon_0305	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CTLon_0306	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CTLon_0308	PWY-7560	methylerythritol phosphate pathway II
CTLon_0322	PWY-7560	methylerythritol phosphate pathway II
CTLon_0329	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CTLon_0329	PWY-2201	folate transformations I
CTLon_0329	PWY-3841	folate transformations II
CTLon_0329	PWY-5030	L-histidine degradation III
CTLon_0329	PWY-5497	purine nucleobases degradation II (anaerobic)
CTLon_0329	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CTLon_0338	PWY-5941	glycogen degradation II (eukaryotic)
CTLon_0338	PWY-6724	starch degradation II
CTLon_0338	PWY-6737	starch degradation V
CTLon_0338	PWY-7238	sucrose biosynthesis II
CTLon_0344	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CTLon_0344	PWY-6167	flavin biosynthesis II (archaea)
CTLon_0344	PWY-6168	flavin biosynthesis III (fungi)
CTLon_0351	PWY-6012	acyl carrier protein metabolism I
CTLon_0351	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CTLon_0359	PWY-5663	tetrahydrobiopterin biosynthesis I
CTLon_0359	PWY-5664	tetrahydrobiopterin biosynthesis II
CTLon_0359	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CTLon_0359	PWY-6703	preQ<sub>0</sub> biosynthesis
CTLon_0359	PWY-6983	tetrahydrobiopterin biosynthesis III
CTLon_0359	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CTLon_0372	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CTLon_0372	PWY-5723	Rubisco shunt
CTLon_0379	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLon_0389	PWY-7533	gliotoxin biosynthesis
CTLon_0429	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CTLon_0429	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CTLon_0430	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CTLon_0430	PWY-7177	UTP and CTP dephosphorylation II
CTLon_0430	PWY-7185	UTP and CTP dephosphorylation I
CTLon_0432	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CTLon_0433	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CTLon_0433	PWY-6855	chitin degradation I (archaea)
CTLon_0433	PWY-6906	chitin derivatives degradation
CTLon_0435	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CTLon_0435	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLon_0435	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLon_0435	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CTLon_0435	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CTLon_0435	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CTLon_0440	PWY-6700	queuosine biosynthesis
CTLon_0452	PWY-1042	glycolysis IV (plant cytosol)
CTLon_0452	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CTLon_0452	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLon_0452	PWY-7385	1,3-propanediol biosynthesis (engineered)
CTLon_0454	PWY-1042	glycolysis IV (plant cytosol)
CTLon_0454	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CTLon_0454	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLon_0454	PWY-7385	1,3-propanediol biosynthesis (engineered)
CTLon_0457	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CTLon_0460	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CTLon_0460	PWY-5723	Rubisco shunt
CTLon_0465	PWY-5381	pyridine nucleotide cycling (plants)
CTLon_0465	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CTLon_0465	PWY-6596	adenosine nucleotides degradation I
CTLon_0465	PWY-6606	guanosine nucleotides degradation II
CTLon_0465	PWY-6607	guanosine nucleotides degradation I
CTLon_0465	PWY-6608	guanosine nucleotides degradation III
CTLon_0465	PWY-7185	UTP and CTP dephosphorylation I
CTLon_0485	PWY-5367	petroselinate biosynthesis
CTLon_0485	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CTLon_0485	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CTLon_0485	PWY-5989	stearate biosynthesis II (bacteria and plants)
CTLon_0485	PWY-5994	palmitate biosynthesis I (animals and fungi)
CTLon_0485	PWY-6113	superpathway of mycolate biosynthesis
CTLon_0485	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CTLon_0485	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CTLon_0485	PWY-6951	CTLon_0485|fabG|YP_001653578.1|GeneID:5858877
CTLon_0485	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
CTLon_0485	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CTLon_0485	PWYG-321	mycolate biosynthesis
CTLon_0486	PWY-4381	fatty acid biosynthesis initiation I
CTLon_0486	PWY-6799	fatty acid biosynthesis (plant mitochondria)
CTLon_0486	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CTLon_0487	PWY-4381	fatty acid biosynthesis initiation I
CTLon_0496	PWY-5941	glycogen degradation II (eukaryotic)
CTLon_0496	PWY-622	starch biosynthesis
CTLon_0496	PWY-6731	starch degradation III
CTLon_0496	PWY-6737	starch degradation V
CTLon_0496	PWY-7238	sucrose biosynthesis II
CTLon_0506	PWY-6823	molybdenum cofactor biosynthesis
CTLon_0506	PWY-6891	thiazole biosynthesis II (Bacillus)
CTLon_0506	PWY-6892	thiazole biosynthesis I (E. coli)
CTLon_0506	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CTLon_0513	PWY-4381	fatty acid biosynthesis initiation I
CTLon_0513	PWY-5743	3-hydroxypropanoate cycle
CTLon_0513	PWY-5744	glyoxylate assimilation
CTLon_0513	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CTLon_0513	PWY-6679	jadomycin biosynthesis
CTLon_0513	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CTLon_0533	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CTLon_0533	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CTLon_0540	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CTLon_0540	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLon_0540	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLon_0540	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CTLon_0541	PWY-4381	fatty acid biosynthesis initiation I
CTLon_0541	PWY-5743	3-hydroxypropanoate cycle
CTLon_0541	PWY-5744	glyoxylate assimilation
CTLon_0541	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CTLon_0541	PWY-6679	jadomycin biosynthesis
CTLon_0541	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CTLon_0542	PWY-6854	ethylene biosynthesis III (microbes)
CTLon_0543	PWY-6749	CMP-legionaminate biosynthesis I
CTLon_0547	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CTLon_0547	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CTLon_0555	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLon_0556	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLon_0561	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CTLon_0561	PWY-5723	Rubisco shunt
CTLon_0578	PWY-1042	glycolysis IV (plant cytosol)
CTLon_0578	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLon_0578	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CTLon_0578	PWY-7003	glycerol degradation to butanol
CTLon_0582	PWY-6891	thiazole biosynthesis II (Bacillus)
CTLon_0582	PWY-6892	thiazole biosynthesis I (E. coli)
CTLon_0582	PWY-7560	methylerythritol phosphate pathway II
CTLon_0583	PWY-1042	glycolysis IV (plant cytosol)
CTLon_0583	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CTLon_0583	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLon_0583	PWY-5723	Rubisco shunt
CTLon_0583	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CTLon_0583	PWY-6886	1-butanol autotrophic biosynthesis
CTLon_0583	PWY-6901	superpathway of glucose and xylose degradation
CTLon_0583	PWY-7003	glycerol degradation to butanol
CTLon_0583	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CTLon_0583	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CTLon_0613	PWY-2941	L-lysine biosynthesis II
CTLon_0613	PWY-2942	L-lysine biosynthesis III
CTLon_0613	PWY-5097	L-lysine biosynthesis VI
CTLon_0614	PWY-2941	L-lysine biosynthesis II
CTLon_0614	PWY-2942	L-lysine biosynthesis III
CTLon_0614	PWY-5097	L-lysine biosynthesis VI
CTLon_0614	PWY-6559	spermidine biosynthesis II
CTLon_0614	PWY-6562	norspermidine biosynthesis
CTLon_0614	PWY-7153	grixazone biosynthesis
CTLon_0615	PWY-2941	L-lysine biosynthesis II
CTLon_0615	PWY-2942	L-lysine biosynthesis III
CTLon_0615	PWY-5097	L-lysine biosynthesis VI
CTLon_0615	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CTLon_0615	PWY-6559	spermidine biosynthesis II
CTLon_0615	PWY-6562	norspermidine biosynthesis
CTLon_0615	PWY-7153	grixazone biosynthesis
CTLon_0615	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CTLon_0616	PWY-2941	L-lysine biosynthesis II
CTLon_0616	PWY-2942	L-lysine biosynthesis III
CTLon_0616	PWY-5097	L-lysine biosynthesis VI
CTLon_0618	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CTLon_0619	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CTLon_0620	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CTLon_0621	PWY-6164	3-dehydroquinate biosynthesis I
CTLon_0622	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CTLon_0622	PWY-6416	quinate degradation II
CTLon_0622	PWY-6707	gallate biosynthesis
CTLon_0628	PWY-1622	formaldehyde assimilation I (serine pathway)
CTLon_0628	PWY-5392	reductive TCA cycle II
CTLon_0628	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CTLon_0628	PWY-5690	TCA cycle II (plants and fungi)
CTLon_0628	PWY-5913	TCA cycle VI (obligate autotrophs)
CTLon_0628	PWY-6728	methylaspartate cycle
CTLon_0628	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CTLon_0628	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CTLon_0628	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CTLon_0630	PWY-3801	sucrose degradation II (sucrose synthase)
CTLon_0630	PWY-5054	sorbitol biosynthesis I
CTLon_0630	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CTLon_0630	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CTLon_0630	PWY-5659	GDP-mannose biosynthesis
CTLon_0630	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CTLon_0630	PWY-621	sucrose degradation III (sucrose invertase)
CTLon_0630	PWY-622	starch biosynthesis
CTLon_0630	PWY-6531	mannitol cycle
CTLon_0630	PWY-6981	chitin biosynthesis
CTLon_0630	PWY-7238	sucrose biosynthesis II
CTLon_0630	PWY-7347	sucrose biosynthesis III
CTLon_0630	PWY-7385	1,3-propanediol biosynthesis (engineered)
CTLon_0634	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CTLon_0634	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CTLon_0634	PWY-6164	3-dehydroquinate biosynthesis I
CTLon_0643	PWY-5097	L-lysine biosynthesis VI
CTLon_0658	PWY-6167	flavin biosynthesis II (archaea)
CTLon_0658	PWY-6168	flavin biosynthesis III (fungi)
CTLon_0658	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLon_0681	PWY-5198	factor 420 biosynthesis
CTLon_0683	PWY-5839	menaquinol-7 biosynthesis
CTLon_0683	PWY-5844	menaquinol-9 biosynthesis
CTLon_0683	PWY-5849	menaquinol-6 biosynthesis
CTLon_0683	PWY-5890	menaquinol-10 biosynthesis
CTLon_0683	PWY-5891	menaquinol-11 biosynthesis
CTLon_0683	PWY-5892	menaquinol-12 biosynthesis
CTLon_0683	PWY-5895	menaquinol-13 biosynthesis
CTLon_0685	PWY-2941	L-lysine biosynthesis II
CTLon_0685	PWY-5097	L-lysine biosynthesis VI
CTLon_0687	PWY-1622	formaldehyde assimilation I (serine pathway)
CTLon_0687	PWY-181	photorespiration
CTLon_0687	PWY-2161	folate polyglutamylation
CTLon_0687	PWY-2201	folate transformations I
CTLon_0687	PWY-3661	glycine betaine degradation I
CTLon_0687	PWY-3661-1	glycine betaine degradation II (mammalian)
CTLon_0687	PWY-3841	folate transformations II
CTLon_0687	PWY-5497	purine nucleobases degradation II (anaerobic)
CTLon_0688	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CTLon_0688	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CTLon_0689	PWY-7560	methylerythritol phosphate pathway II
CTLon_0701	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CTLon_0708	PWY-7205	CMP phosphorylation
CTLon_0711	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CTLon_0711	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CTLon_0718	PWY-7560	methylerythritol phosphate pathway II
CTLon_0745	PWY-622	starch biosynthesis
CTLon_0747	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CTLon_0752	PWY-5269	cardiolipin biosynthesis II
CTLon_0752	PWY-5668	cardiolipin biosynthesis I
CTLon_0756	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CTLon_0756	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CTLon_0757	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CTLon_0757	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CTLon_0757	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLon_0757	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLon_0757	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CTLon_0757	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CTLon_0757	PWY-7205	CMP phosphorylation
CTLon_0757	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CTLon_0757	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLon_0757	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CTLon_0757	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CTLon_0757	PWY-7224	purine deoxyribonucleosides salvage
CTLon_0757	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CTLon_0757	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CTLon_0762	PWY-1042	glycolysis IV (plant cytosol)
CTLon_0762	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLon_0762	PWY-6901	superpathway of glucose and xylose degradation
CTLon_0762	PWY-7003	glycerol degradation to butanol
CTLon_0789	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CTLon_0789	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CTLon_0789	PWY-5989	stearate biosynthesis II (bacteria and plants)
CTLon_0789	PWY-5994	palmitate biosynthesis I (animals and fungi)
CTLon_0789	PWY-6113	superpathway of mycolate biosynthesis
CTLon_0789	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CTLon_0789	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CTLon_0789	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CTLon_0789	PWYG-321	mycolate biosynthesis
CTLon_0814	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CTLon_0814	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CTLon_0815	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CTLon_0815	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CTLon_0815	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CTLon_0844	PWY-1042	glycolysis IV (plant cytosol)
CTLon_0844	PWY-1622	formaldehyde assimilation I (serine pathway)
CTLon_0844	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CTLon_0844	PWY-5484	glycolysis II (from fructose 6-phosphate)
CTLon_0844	PWY-5723	Rubisco shunt
CTLon_0844	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CTLon_0844	PWY-6886	1-butanol autotrophic biosynthesis
CTLon_0844	PWY-6901	superpathway of glucose and xylose degradation
CTLon_0844	PWY-7003	glycerol degradation to butanol
CTLon_0844	PWY-7124	ethylene biosynthesis V (engineered)
CTLon_0844	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CTLon_0848	PWY-3781	aerobic respiration I (cytochrome c)
CTLon_0848	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CTLon_0848	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CTLon_0848	PWY-5690	TCA cycle II (plants and fungi)
CTLon_0848	PWY-6728	methylaspartate cycle
CTLon_0848	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CTLon_0848	PWY-7254	TCA cycle VII (acetate-producers)
CTLon_0848	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CTLon_0849	PWY-3781	aerobic respiration I (cytochrome c)
CTLon_0849	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CTLon_0849	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CTLon_0849	PWY-5690	TCA cycle II (plants and fungi)
CTLon_0849	PWY-6728	methylaspartate cycle
CTLon_0849	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CTLon_0849	PWY-7254	TCA cycle VII (acetate-producers)
CTLon_0849	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CTLon_0863	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CTLon_0869	PWY-5199	factor 420 polyglutamylation
CTLon_0870	PWY-3841	folate transformations II
CTLon_0870	PWY-6614	tetrahydrofolate biosynthesis
CTLon_0871	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CTLon_0871	PWY-6148	tetrahydromethanopterin biosynthesis
CTLon_0871	PWY-6614	tetrahydrofolate biosynthesis
CTLon_0871	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CTLon_0871	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CTLon_0872	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CTLon_0872	PWY-6148	tetrahydromethanopterin biosynthesis
CTLon_0872	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CTLon_0872	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CTLon_0887	PWY-3221	dTDP-L-rhamnose biosynthesis II
CTLon_0887	PWY-6808	dTDP-D-forosamine biosynthesis
CTLon_0887	PWY-6942	dTDP-D-desosamine biosynthesis
CTLon_0887	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CTLon_0887	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CTLon_0887	PWY-6974	dTDP-L-olivose biosynthesis
CTLon_0887	PWY-6976	dTDP-L-mycarose biosynthesis
CTLon_0887	PWY-7104	dTDP-L-megosamine biosynthesis
CTLon_0887	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CTLon_0887	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CTLon_0887	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CTLon_0887	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CTLon_0887	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CTLon_0887	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CTLon_0887	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CTLon_0887	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CTLon_0890	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
