        gatC NONE
        gatA NONE
        gatB    5084 ..    5119 + -14.2  -4.58685   AAAGGCATAAAAGAG    AAGAACCCTCTTCATA AAAC TATGGAGAGGGTTCTC     TTTTTAAAAGGCTTT 100 58
CTRC55_00040 NONE
CTRC55_00045    8184 ..    8195 +  -4.4  -3.86346   GTTCTTTGGAGCTTC                TGCA AATT TGCA                 TTTCTAACAAGGTAA  57 7
CTRC55_00055    9985 ..   10000 +  -4.6  -3.78934   CCGGGAAAAAGTTTG              GAGCAG CTAA CAGCTC               TTCTTCTGAAGAGAA  59 203
CTRC55_00075 NONE
CTRC55_00080   16038 ..   16069 + -14.6  -3.28712   TACTAATTGCAGTAG      GGTACAAGGCTCTT GAAA AGGAGCCTTGTATC       TTGTGCAAACAAAAG 100 35
CTRC55_00090   18414 ..   18425 +  -2.2  -5.00138   GTAAAAGATCGAACA                GTCG CGGT TGAC                 TTTTTCCTTTAAGTC  66 72
CTRC55_00095   19862 ..   19901 + -10.2  -6.04324   GGGCATAAGCAAGTT  CAATAGGAGTCTTGTTAC TTAG GTAACAAGACTCTTCTTC   TTTTTTCTTTTTTGC 100 33
CTRC55_00105   20892 ..   20902 +  -8.2  -3.40597   GGAGCTCGCGAACAC                 CGGG TCA CCCG                 TATTTAGGTAACAAC  71 384
        ileS   24570 ..   24590 +  -6.2  -5.94597   CATTGAGCAAAAAAA            GAGGTCTT ATTAA AAGATCTC            TTTTTTTTGCTCTTA 100 50
       rpmE2   27853 ..   27870 +  -9.8  -6.11229   GTTATCTAGAGAAAA             GCGGGG CGAACA CCCCGC              TTTTTTTGTTTTAAT 100 58
        prfA NONE
CTRC55_00135 NONE
CTRC55_00140 NONE
        rpsP NONE
        trmD NONE
        rplS   33102 ..   33123 +    -3  -2.80252   AAATAGTAAAGAAAA           GAGAGCGGC ATTAA GCC-CTTTC           TGCTGTTCTCAACGT  42 35
        rnhB NONE
         gmk NONE
CTRC55_00170 NONE
CTRC55_00175   36394 ..   36419 +  -8.3  -5.93809   CTTCACGGAGAGAAA         GAGGGGTTTCA TTTA TAGAACCCCTC          TTTTTTTTGTGCAAA 100 55
CTRC55_00190   41551 ..   41568 +  -2.7  -3.95324   TGCATAGTGACTAAA             GAGTTTT TTAA AGAGCTC              TTCTTGTTGCAGCTG  54 449
CTRC55_00210   44010 ..   44026 +  -2.3  -4.46775   TACTATTGCGAATAC              TTATATG ACT CATAAAA              TTTCTGTTTTACATC  59 63
        ruvB NONE
CTRC55_00220   45864 ..   45887 +   -11  -5.72616   GCTTGGTAGCAAAAA          GACCCATCTC TAAT GAGCTGGGTC           TTTTTTTATCTAGAT 100 57
CTRC55_00235 NONE
CTRC55_00240   49554 ..   49568 +  -3.6  -2.72314   ATTCAATCCCATATC               TTAAGA AGC TCTTGA               ATCTTCTTGTCTATA  45 11
CTRC55_00245   51329 ..   51363 + -12.5   -5.4756   ATTAAATAATATGTG     TGGTTAGTTTTTAAT AAAAA GTTAAAAACTAACCA     TTTTTTATTAAAGTT 100 56
CTRC55_00250   52138 ..   52164 + -10.3  -5.61913   TGATTTTCTAAGTAG        CCGGGAATAAGA ATTC TCTT-TTCCCGG         TTTTTTGTATTTATT 100 56
CTRC55_00255   53220 ..   53232 +  -4.8  -3.40898   AGATTTTTATTTGAT                GGGA TTTTT TCCC                TGTATATTTTTTCGT  56 39
CTRC55_00260   54059 ..   54081 +  -3.6  -4.00348   TGTTAATTTAATTTT           TTCTAATT AAAAGAA AATTAGAA           TTTAATTAATTAAAA  57 70
CTRC55_00265   55585 ..   55611 + -12.4   -4.4767   GTTATTAACTATTTG         AGTTAAGGGAGA GAA TCTCCCTTAACA         TTTTATACTGAATCG 100 33
CTRC55_00270   56433 ..   56447 +  -9.2  -3.98913   TTGGGAGATCAGTGC               CCTCGG CAG CCGGGG               TTATTTCGGTATCAG  81 120
CTRC55_00275   58309 ..   58320 +  -2.2  -4.88495   TCGTCATAAGATAAA                GGAG GAGA TTCC                 TTTTCTTCTGTATCT  66 185
        sucA NONE
CTRC55_00300   65024 ..   65042 +  -4.6  -3.60792   TTCTTGCTACTGCTC             GGAAATCG AGG TGATTTTC             TTTAGGCATTAAAGG  57 248
CTRC55_00325   71028 ..   71038 +  -2.6  -4.08317   AGGGTAGATATTGTT                 TAAA AAT TTTA                 TTTGATTTAGCCTTA  55 78
CTRC55_00330   71855 ..   71870 +  -2.6  -4.02302   TTTAGTAACTGTCTC              CAGAAGA TCC TCT-CTG              TATTTTTCCTATCAA  53 36
CTRC55_00335 NONE
CTRC55_00340   74702 ..   74722 + -11.9  -5.24129   AGCATAAAACAAGAA            GGCCCAGTA AAC TACTGGGTC            TTTTTTATGAAGCAA 100 34
CTRC55_00355   78908 ..   78924 +  -7.9  -3.58343   CTGCGCTTTTTAGAA              CCTCGAG GAG CTCGTGG              TTTAGGGCTAATGGA  70 295
CTRC55_00365 NONE
CTRC55_00370 NONE
CTRC55_00375 NONE
CTRC55_00380 NONE
CTRC55_00385   85154 ..   85169 +  -2.5  -3.49102   CTTATAGTATCTTAG              GCTTC CTGATA GAGGC               TTGTATAGCAGCTGT  47 137
CTRC55_00390   87274 ..   87297 +  -3.2  -4.73613   TTCCGTTTCTTAGGA          ACTCCCTCATT AAG AAT-AGGGAGG          TTTTGTTCGTAATGA  67 202
        smpB   91408 ..   91429 +  -6.5  -4.63479   ACAGCCCAAGATCTT           CCGGAAGGA TGTT TCCCTCTGG            TTTTGATTTCTCCTC  77 322
CTRC55_00430   94230 ..   94250 + -12.6  -5.93809   TTTTTTGGTTTTTTT            CGCAAGGC CCAGA GCCTTGCG            TTTTTTTTGTCCAAA 100 252
CTRC55_00435 NONE
CTRC55_00440   96542 ..   96552 +  -5.4  -5.81412   ATCTTGCAATCCAAT                 CAAG CAG CTTG                 TTTTTTTTCGCTAGG  95 40
CTRC55_00485  108152 ..  108163 +  -5.8  -2.85874   AAAATCAAGGATATG                TGCC TCTA GGCA                 TAGTTGGTGTCTTTG  54 190
CTRC55_00520 NONE
        acpS  117937 ..  117985 + -12.8  -3.16564   AAAAAGAGGGAGTAT GCCAAAGCTTATTGATT-AGAAC AAGG GCTCTTGATTAATAAGCTTTGGC TTCGTAGGATGAGGG  91 520
CTRC55_00535  118518 ..  118536 +  -2.5  -2.64274   CCTAGAGGTTATTGG             TAAAGAG AGAGC TTCTTTA             TGAGTTTACAGAAGT  41 42
CTRC55_00540  119726 ..  119739 +  -8.1  -2.63723   GTATCACTTTCTAAA               GCAGC TTTT GCTGC                GTTCATTCCTCCGCC  60 319
CTRC55_00550  122659 ..  122696 + -15.7  -5.37043   AGGGCTTTATATAAT   GAGACCGAGCTTCC-CAT TCT AAGCGGAGGCTCGGTCTC   TTTTTTGTATCGGAT 100 84
CTRC55_00560  124807 ..  124821 +  -2.8  -5.71712   TAGTCTTTTTTCGAC               TCTTTG CAG CAGAGG               TTTTTTTATATGAAC  85 55
CTRC55_00565  125877 ..  125890 +  -3.1  -3.19331   ACGGCACAGGTGTAG               TAGGG ATTT CCTTA                TAGTTGTTTTTGATG  46 316
CTRC55_00595 NONE
CTRC55_00600  134875 ..  134893 +  -7.4  -2.67709   AAGCTATCTCTTGTT             GCTCCG AGTTAAA CGGAGC             CTTCTAGCTATTTTG  59 14
CTRC55_00605  135580 ..  135594 +  -3.5  -3.68674   GGTTTTAAAGATTAG               GCTTC ATTGA GAGGC               TGTTTTAAGAGTTTT  51 51
CTRC55_00610 NONE
CTRC55_00615  136353 ..  136373 +  -7.6  -2.94298   GGCAAAACTCGAAAA            GCAGACTT CCTCT AGGTCTGC            TAGCTTTTTTAATGA  64 40
CTRC55_00620  136957 ..  136974 + -11.3  -6.55664   TTCGCGTAGGAAAAA             GAGGAGG GAGA CCTCCTC              TTTTTTTTTATTTTG 100 54
CTRC55_00635 NONE
CTRC55_00640 NONE
CTRC55_00645 NONE
CTRC55_00650  141430 ..  141453 +  -2.4  -6.19302   GGTAGCACCTTTTTA          AATTTAGCTG ATGG CAGCTAACTA           TTTTTTTTATTATGT 100 5
        rplM NONE
        rpsI  142573 ..  142606 + -14.1  -4.56597   TATTGGAGTGCGTTT     CAGAAAAGCCTTCTT TCAA AAGAAGGCTTTTCTA      TTTTTAGGAACGCCA 100 58
CTRC55_00680 NONE
CTRC55_00685  145930 ..  145942 +  -6.3  -4.18018   GAGTTTAAAGGACCC                GCTAT TGT ATAGC                TTTTAAGTAGAGCGA  69 134
CTRC55_00705 NONE
CTRC55_00710  153458 ..  153491 +  -4.7  -2.92003   GATTTGTGGTATAGT     GCTCCCT-AAAGCT TTAGATC AGCTTTTAGGGAGA     TATATGAGCTATTCT  51 78
CTRC55_00715 NONE
CTRC55_00720 NONE
CTRC55_00725  156199 ..  156209 +  -3.2  -4.57569   GAGACAGAGAAATCT                 TGAG TGG CTCG                 TTTTTGAACAAATAC  63 221
CTRC55_00735  158268 ..  158289 +  -6.7  -3.67622   TTGTAAAAACTGGGG           TTGCAAAGA AGGT TCTTTGTAA            TTAATTTTACGAATG  65 151
CTRC55_00740  159048 ..  159065 +  -9.1  -5.70829   TCGGTTGTTTGCGAA             GCTTGGG TTCT CCCAGGC              TTTTTTTATGCTCTT 100 301
CTRC55_00750 NONE
CTRC55_00755 NONE
CTRC55_00760  161761 ..  161786 +  -9.8  -3.88001   TCTTTTCTATTTACA         CCGCTTAGCT TGCTTT AGTTAAGCGG          TTCCTTTTTATCAAA  83 47
CTRC55_00765 NONE
        ligA NONE
CTRC55_00775  170656 ..  170707 + -11.6  -2.71681   ATCACTAGCTTCATA TTTCGATGC-GCGGTGGGAGGGATA GTA TAGCTCTCCTTCCGCAGCATCGAGC TGCTTACACCCCTTA  80 463
        rpmG  173516 ..  173554 +  -2.5   -2.9756   CTAAGTAGGCTTTTA  TCTAGCTTCTAAGATTCC CAAG GGTGTCAT-GAAGTTAGA   ATTATTATTAGCCTT  43 33
CTRC55_00795 NONE
CTRC55_00800  175953 ..  175963 +  -5.4  -3.34894   TTGTACGCGTGAGTG                 TACC ATG GGTA                 TCTTTAAGAGGAGTT  55 241
CTRC55_00835  183931 ..  183960 +  -3.6   -3.4678   GTTGAGGAGCGGCTT       CTGGATAGGAAG AAAGGC CTTGTTGTCCAG        TTGTAGTGTAAGGCT  51 72
CTRC55_00860  188128 ..  188140 +  -6.3  -2.81702   TATTGGGCTTTTGCT                GCTAA TGA TTAGC                TCCTTGCTCCTATTG  54 206
CTRC55_00875 NONE
CTRC55_00880  189699 ..  189724 +  -5.5  -5.00884   TTTATTTGATTAAGA         GATGTTCTTAT AGAA GTAAGAGCGTC          TTTTTTGCGCAGGAT  76 58
CTRC55_00885 NONE
CTRC55_00890  191742 ..  191775 + -13.3  -2.78465   ATTTATGAATATGAA     TATGAAGCCCAGGCA TCGA TATCTGGGCTTCATA      GTTGTCTGTATAGAT  93 40
CTRC55_00910  195125 ..  195145 +    -4  -3.07113   AGTAATCACTCTCTC            GATCTCAT CAAAA GTGGGATC            TTCAATAAGATAATC  49 513
CTRC55_00925  197262 ..  197273 +  -2.2  -4.26903   CGGTTTCTATAGTTT                CATC AAAA GGTG                 TTTTCGTAAGCTGGA  58 143
CTRC55_00945 NONE
        pyrG NONE
CTRC55_00955  202680 ..  202694 +   -10  -4.36914   TATACTAGGACCCCT               CATGGC AAA GCCATG               TTTTATGAGAGAGAA  89 33
CTRC55_00960 NONE
CTRC55_00965  205299 ..  205318 +    -5  -2.80472   TAGGAGATCCGGATA            TGCAAGTA ATGA TACTGGCA             CCTTTTTTGCTAAAA  49 217
CTRC55_01015 NONE
CTRC55_01020 NONE
CTRC55_01025  220240 ..  220283 +  -3.2  -4.89567   TTTAAAATGCGGAGA GGTCTTGTCTAGAGAGTGTTA AAT TATCACTCT-TGGCAAAGGCC TTTTATGTTTTCAAC  69 78
CTRC55_01030 NONE
CTRC55_01035 NONE
CTRC55_01040 NONE
CTRC55_01045  223746 ..  223758 +  -2.7  -3.47841   TTTACTTTCTCTTTT                TGATA ATC TATCG                TTATCCTGTAGCTCT  47 23
CTRC55_01050  224811 ..  224826 +  -3.4  -3.28924   CTTTTGAGTCATAGT              TTTTAT CCAG ATAAAA               TTATAGGGAGCCATG  48 27
CTRC55_01055  226261 ..  226274 +  -3.1  -2.79796   ATTCGCTAACGTGTT               TGAGC AAAA GCTTA                TGTCGTCGAATAAAC  44 32
CTRC55_01060 NONE
CTRC55_01065 NONE
CTRC55_01070  230910 ..  230927 +  -9.9  -2.83905   CCAAACATAAGAGGC             GCCTCTT TTTG AAGAGGC              TCTAATAAATTATGC  72 515
CTRC55_01085 NONE
CTRC55_01110 NONE
CTRC55_01115  242143 ..  242171 +    -9  -3.89614   AAATTCTTTTGCACA        GAAAAGGGCTTT GTAAA GAAGCTCTTTTC        TTTCTAAGACTTACC  79 39
CTRC55_01120  243002 ..  243015 +  -2.5  -3.18023   GTCTTTTCCTAGATT               TAAAT AAAA ATTTA                TATTAATCATAATAC  44 40
        surE  243976 ..  244001 +    -7  -5.00616   CTGGCTTAGTTATCT         GTATGTTGAA ACGAAC TTCAACGTAC          TTTTTTCAGCAAGAA  83 32
        ubiA NONE
CTRC55_01135  245550 ..  245576 +  -9.5  -4.50193   CTTATAAAAAGATGG        GAGAACC-CCCG CTAA TGGGAGGTTCTC         TTTTCGTTGATTACT  86 11
CTRC55_01190  253956 ..  253973 +  -4.9  -3.67597   GTCTTAATCACGAGA             TCTTTTC GTTT GAAAGGA              TTGTTGACTGCACAG  57 137
CTRC55_01195  255767 ..  255777 +  -3.2  -4.92757   ATCGTTACAGTTTGT                 GGAG GGT TTCC                 TTTTCTTCTTGCTGC  71 292
CTRC55_01205  256566 ..  256591 +  -4.9  -4.20918   TTATATGTAAGCTAA         TTTTTGAATTA GATT TAATTCTAAAA          TTTCTTGAAATTAAC  66 26
CTRC55_01210  259399 ..  259409 +  -5.4  -2.82862   CCCGGGAATACATAA                 CTAG TTC CTAG                 CTTTAAATCCTTAGT  52 15
CTRC55_01215  259889 ..  259915 +  -7.4  -4.35461   ATGGGAACTGTGGGC         CTAAACTCTTTG TTG CAGAGATTTTAG         TTTTGATGCTCTTGG  76 63
        recR  264191 ..  264205 +  -4.2  -3.29511   CTAATATGTGGGGAC               GCCTAT GAG ATTGGC               TTCTGACCAAATAAG  52 293
CTRC55_01245  266685 ..  266707 + -12.1  -3.67517   TTCTAGAATCCGAAA           GGAGAAGGA GAGCA TCCTTCTCC           TTTCACCTATTGGTA  90 35
CTRC55_01250 NONE
        lpxD  268553 ..  268566 +  -3.8  -4.05322   CGTGAAAACGTCTCC               CCCT TTATGT AGGG                TTTCTATAGCCATTT  58 223
CTRC55_01265 NONE
CTRC55_01270 NONE
CTRC55_01275  273067 ..  273085 + -11.8  -4.30987   TACTTCTCAATTAAA             GAAGGGAA TGT TTCCCTTC             TTTCTTCTAAGAAGT  93 27
CTRC55_01285 NONE
CTRC55_01305 NONE
CTRC55_01310  282918 ..  282928 +    -4  -3.57825   CTAAATCCTTATTAA                 GAAA TTT TTTC                 TTGCTGTTTTATACG  53 237
CTRC55_01320 NONE
CTRC55_01325  286405 ..  286422 +  -3.4  -2.98005   CTCCTTGTTGTCCTC             CTCCAG AAATTA TTGGAG              ATATTTTGATTTTTG  44 496
CTRC55_01345 NONE
CTRC55_01350 NONE
CTRC55_01355 NONE
CTRC55_01360  290775 ..  290788 +  -2.4  -4.12043   TGAAAAGCTGGGCAA               GAGT CTAATA ACTC                TTCTTTGGTTCCTTC  55 119
CTRC55_01410 NONE
CTRC55_01415  302449 ..  302465 +  -3.1  -5.06089   GAGATTCTCCTTCTA              TTATTGA GTA TTAATAA              TTTTGTTTCTGATTT  71 81
        dnaA  304006 ..  304018 +  -4.9  -4.17048   CACTTTGTGTAGTCT                TGAAA AGC TTTCA                TTATTTTACAGAGAC  63 29
CTRC55_01425  305113 ..  305124 +  -2.2  -2.74144   AAGATAGACAAATCT                CTCT TCCT GGAG                 CTTTACAAATGCAGC  41 500
CTRC55_01435 NONE
CTRC55_01440 NONE
CTRC55_01445 NONE
CTRC55_01450  309110 ..  309126 + -10.1  -3.77206   CAAGGCTTCATAAAT              GGCGGTT AAT AGCCGCC              TTTGCTAGGGTTCTA  81 28
CTRC55_01475  316788 ..  316803 +  -5.4  -2.87564   AAACAAATGTCCCCC              TGGTAG AAAG CTACCG               TCTGTCCAGGGGTGA  50 64
CTRC55_01485  318029 ..  318040 +    -3  -2.54636   AACCATAGTTACGGG                GAAA TCTC TTTC                 ATGGTTTATTTTAGA  41 42
CTRC55_01490  319765 ..  319787 +  -6.3  -4.99638   TGACAAAAAGAAAAA           GGAGAGC TGTTGCTGT GCTCTCC           TTTTTCTCTAAATAT  79 55
         rnc NONE
CTRC55_01540 NONE
CTRC55_01545  330166 ..  330178 +  -2.7  -4.70515   AAAAACTGGTGGCCA                CAGTA ACT TATTG                TTTGTTTTGGCTCTG  65 512
CTRC55_01560  336365 ..  336375 +  -3.2  -2.92463   ATCTTGGTAATCGTT                 CTCT TTG AGGG                 TATATACCTGATAGC  45 134
CTRC55_01605 NONE
CTRC55_01670 NONE
CTRC55_01675  361742 ..  361764 + -13.6  -2.83715   AAAAACCTAATGAGA           TAGCCAATGA TTC TCATTGGCTA           TCTCCTCCTGCTCAC  93 31
        tpiA NONE
        xseA NONE
CTRC55_01710 NONE
CTRC55_01715 NONE
CTRC55_01720  370495 ..  370509 +    -5  -3.68261   AATATTTTGTATAGT               TGAAGG CTT CTTTCA               TTTCGGATATTCTAG  57 56
CTRC55_01725  371995 ..  372007 +  -3.4  -2.76442   GATGTGCTATCCCCC                TCTC TTGAC GAGA                TAGTTCCATAATCAT  44 2
CTRC55_01730  377582 ..  377595 +  -3.9  -2.64091   AACCCATTCATAGTT               TTCTT CATC AAGAA                TAGTATAGCATGATT  45 206
CTRC55_01735 NONE
CTRC55_01740  379477 ..  379502 +  -3.2  -2.88544   TAGTCCTAAAAACAT         AGGCAGAAGA GCAGGA TCTCCTGCCA          TCTCTCCACATACAG  43 200
CTRC55_01765  383786 ..  383811 +  -9.8  -5.07486   CTGTTCTAAAAAAAA         GCGCTCCT-GT TTATC ACTAGGAGCGC         TTTTTGTTGGAAATG  93 43
CTRC55_01790  390899 ..  390926 +   -15   -2.8598   TGGGGTTTAAATCGT        GTTCTCTGAGCT GTAA GGCTCAGAGAAC         CTTCTCTCTTATTCT 100 31
CTRC55_01795  391374 ..  391397 +  -5.3  -3.79678   AGCTATCTGATAAAA          GGAGATCTT TCGTAC AAGCTCTCC           TTCTTGTGAAAGCTT  62 39
CTRC55_01805 NONE
        xerC  393651 ..  393665 +  -2.8  -3.72405   CAAACTTCTTGTACT               CTAAGA AGG TCTTTG               TTATCCTTTTGTCCA  51 50
CTRC55_01815 NONE
CTRC55_01820 NONE
CTRC55_01825 NONE
CTRC55_01830  399696 ..  399722 +  -8.1  -6.17268   GGATAACAAAAAAAA         CCAAACTAGTT TGTCC AACCAGTTTGG         TTTTTTTTCTTATCG 100 35
CTRC55_01865 NONE
CTRC55_01870  406716 ..  406727 +  -5.8  -2.64726   AAGCCTCGAAGAGCA                CTGC TAAT GCAG                 CTTGCTCTTCTACCC  54 41
CTRC55_01915 NONE
CTRC55_01920 NONE
CTRC55_01925 NONE
        aroB NONE
       aroDE  419871 ..  419882 +  -2.2   -2.9704   CTATGCTGCTTCTTC                GTCT TTGG AGGC                 TCTATGCGTCTTTGT  42 52
CTRC55_01940  420713 ..  420737 +  -5.8  -3.10498   CTGGCAAAAAAATCT          TTTTTCCACT ACACG GGTGGAAAAG          CTTTATTAGAGGTTG  57 67
CTRC55_01945  422123 ..  422133 +  -5.4  -2.99545   GTTTATAGCGTGCGA                 GCTA ATT TAGC                 TATCTAATCTGTAGA  53 8
CTRC55_01950  422773 ..  422783 +  -6.8  -3.23393   TTAAATTTCGAAAAT                 GCAG CGC CTGC                 TGTTATCCAATAAGA  61 206
CTRC55_01955  424311 ..  424341 + -12.8  -4.40333   TTATCTTTTCAAAAG       GAACTGGTTCTTTT TCA AAGAGAATCAGTTC       TTTCTATTCTTTAAA 100 73
CTRC55_01960  425498 ..  425524 +    -8  -2.84518   GAGCAGCCTAACTCT         CCCCTCTCTTCT TAA AAAAGAGAGGAG         CCTTTTTTCCTTACA  62 30
CTRC55_02005  434253 ..  434264 +  -3.6  -3.23332   AAAAACTGTTCAATA                GCTC GACA GGGC                 TCTATTCTATGCATA  48 523
CTRC55_02025  439292 ..  439306 +  -5.7  -4.07568   CAAAATATTCTCCTT               CTCCT TACTC AGGAG               TTTTAAAAGAAAACG  66 354
CTRC55_02035  440764 ..  440778 +  -8.6  -4.20368   AAATTACGCTGGACA               GATGAG AGT CTCATC               TTTATATTACCGTCC  83 61
CTRC55_02040 NONE
CTRC55_02045 NONE
CTRC55_02055 NONE
        hrcA NONE
CTRC55_02065  447941 ..  447953 +  -4.1  -3.12327   AAAAAGAATAATTAT                CCTAG AAA TTAGG                TGTTCAATATGAGCG  48 30
        dnaK  449965 ..  450000 +  -6.8  -5.75945   TTTATTCATCTTCCT    TAAGCAAGAGCCTCTT GAAA AAGGGGCTCTTGCAGC     TTTTTTTTAAAAAAT 100 46
CTRC55_02075  452451 ..  452464 +  -2.3  -5.02074   CGTTTCGTCTAGGCA               GACTC GTCC GCGTC                TTTTTTCAAAACTCC  69 155
CTRC55_02080  453744 ..  453755 +  -5.8  -5.89921   GAATCCGGCTTACTC                GCTC TTCC GAGC                 TTTTTTTATTATAAT 100 428
        nrdR NONE
CTRC55_02125 NONE
        lspA  462673 ..  462683 +  -2.6  -2.50607   GAAAGTAAAAAATGC                 TTTT AAC AAAA                 AATTCTTTCTTTCAA  41 20
CTRC55_02135  464350 ..  464360 +    -4  -2.52464   TTTTAACTTTCAATG                 TCAT ATA ATGA                 TGGCTTGCAACCAAG  44 234
CTRC55_02140  465628 ..  465641 +  -5.3  -3.41222   TTATGAATTAGCATC               GGAAT GACC ATTCC                TATTTGAAATTGGGA  57 19
        lpxB  467552 ..  467564 +  -4.8  -3.23881   TAAAAAATCTTGGAT                CGCT AGAAA AGCG                CTTTCTGTTTATAGT  54 59
CTRC55_02150  470600 ..  470633 + -19.9   -4.6575   CTCTGTATCTTCCTA     GTAAATTAGGCAAGG AATA CCTTGCCTAATTTAC      TTTTCTGATTTATCT 100 73
CTRC55_02155  475949 ..  475973 + -14.3  -3.66883   CTTCTAATTCTTTTT          GGCCAGCCTCT TCA AAAGGCTGGCC          TTTACGATCTCTTAA 100 34
CTRC55_02160  481456 ..  481477 + -12.3  -3.31461   TAAATATCCTGGAAA           GGCAGCTCT CGCA AGGGCTGCC            TTCTAGGAATCCCTG  89 42
CTRC55_02165 NONE
CTRC55_02170  483514 ..  483526 +  -4.8  -2.77834   CTGCTGCAACACTTT                TGGG AGATG CCCA                TGATCTCTATTCTCT  50 10
CTRC55_02175  484886 ..  484903 + -11.3  -2.84841   CAACCAAGCGAATTT             CTCCAGG TTTA CCTGGAG              TAGCTTTTGTTGGAG  81 510
CTRC55_02195  487377 ..  487396 +  -2.1   -5.2853   TTCTGTTCCTTTCAT            AAGCAAC AGCAGA GTTGCTA             TTTTCTTTTTAAATC  72 132
CTRC55_02200 NONE
CTRC55_02205 NONE
CTRC55_02210  488370 ..  488385 +  -2.6  -3.25598   AAGCCTCGAGTCTTT              TTGTGGA CTC TCC-CAA              TAATTTCTTTTACAG  46 103
CTRC55_02215 NONE
CTRC55_02220  490088 ..  490109 +  -3.7  -2.83747   ACCCTACCTTCAACT           CGC-TCTCTT TTC AAGTGATGCG           TAGTTATCAAAGTTG  45 40
CTRC55_02225  492200 ..  492225 +  -6.9  -2.88249   AACAGCTGTTTTGAT         AGGGTCTTTCCT ACT AGGAA-GACCCC         TATCTAAAGGATGTG  60 109
CTRC55_02230 NONE
CTRC55_02235 NONE
        ubiE  495065 ..  495084 + -12.2  -3.03998   TTCCAGACGCCCTCC            TCCTCGCA AGTG TGCGAGGA             ATTCTTCTTCTGTAT  86 249
        hemD  499860 ..  499887 +  -8.6  -3.28785   ATTTATTTTAATGAA        GATCTCTTCA AGAAGTTG TGAAGAGATC         TTACCTCTTTTAGAG  72 54
        ispF  500519 ..  500529 +    -4  -2.97747   AGCTCTCGTACCGCC                 TTAG GAC CTAA                 TATCTGCTCTAAAGC  47 74
CTRC55_02305  505542 ..  505553 +  -4.4  -3.49419   CGAGTAGGTAAACAA                CCAA GTAC TTGG                 GTTTTTATACAACAA  53 88
CTRC55_02310  507592 ..  507616 + -15.8  -3.67296   AGCTCAATAAAATCT          GGGAGGAGGA CTCTT TCCTCCTCCC          TTTCCATACATCATC 100 31
CTRC55_02330  511155 ..  511171 +  -2.9  -3.42574   TAGCCACATATAGCA              GAGGGAT TAC AGCCTTC              TTATGATGCACTTGA  48 222
CTRC55_02365 NONE
CTRC55_02375 NONE
         cmk NONE
CTRC55_02385 NONE
        argS  525748 ..  525758 +    -4  -3.66216   TCTCGCGCTAAAACC                 TTAG CTC CTAA                 TCTTTCTAATTTCCC  54 100
CTRC55_02400  530356 ..  530366 +  -5.4   -4.4017   GGTAAACATCGTCTA                 CATC GTC GATG                 TTTTCTAACCATTCA  68 106
CTRC55_02420  533433 ..  533457 + -13.7  -2.94669   GAAATTGACTCACGT          GTTCCTCGTCT TTA AGATGAGGAAC          TAGTTCATTCTTTTT  95 45
CTRC55_02425 NONE
        ispD NONE
        truA  535998 ..  536022 +    -5  -4.17657   CTACCATAGTGGCTG         GGATT-CCGGC TAAT GCCTGCAATCC          TTTTACACTATCCTC  63 102
CTRC55_02445  537361 ..  537389 +    -9  -4.09864   AAGGATATTTCCTGT        CAGGGGAAGAAA CTCTA TTTCTTCTTCTG        TTTTCAGACCTAGAT  79 105
CTRC55_02450 NONE
CTRC55_02455  538933 ..  538946 +  -6.7  -3.32844   CCATCCTATGGACTC               CTGCT TAAG AGCAG                TTATCAAATGCAAAA  61 18
CTRC55_02460  540237 ..  540253 +  -5.1  -2.73542   CAACTGGATAGAGTA              CCTGG CTTCGGA CCAGG              TGGTTGGAGGTTCGA  50 119
CTRC55_02465 NONE
        recO NONE
CTRC55_02485 NONE
CTRC55_02490  544049 ..  544061 +  -7.7  -2.71712   TGCCAGAGAAGCGAC                CGAAG CAG CTTCG                ATTTCCGCACCAAAA  62 276
        pheT NONE
CTRC55_02505 NONE
CTRC55_02510  548705 ..  548724 +  -7.2  -2.79302   TCAACATAATAGCGG            GAG-GCCAT AGA ATGGCGCTC            TCTGATGGAAATGCT  59 111
CTRC55_02550 NONE
CTRC55_02555  557040 ..  557051 +  -4.4  -3.39841   AATTTCAAGACAATC                TCGT ATTC ACGA                 ATTTCTTTCTTGGGC  51 176
CTRC55_02590  563049 ..  563073 +  -7.9  -3.02263   TTTTCAAACGGCCTA          GCAGTAAATGC ATA GCATCTATTGC          TGTTAAACCAGCTAT  62 94
CTRC55_02630  573132 ..  573160 +  -3.9  -3.82604   GATTCTCCTAGGCAT        TAGCTGAGTCTTT TCA AAAGACTTACCAA        TTATTCCTTGCGTAA  55 150
CTRC55_02635 NONE
CTRC55_02640  576036 ..  576050 +  -2.8  -3.09273   GCTTCTTTAGGATTC               GTTGCT CCC ATCAAC               TCTCTGTTACGGGCG  44 236
CTRC55_02840  602966 ..  602990 +    -8   -3.7941   TTAGACAAAAAATGC         GCTC-TTTAGG CACC CCTAAAAGAGC          TTCTTCTAAAGAATC  72 314
CTRC55_02865 NONE
        dnaE  612758 ..  612780 +   -12  -2.71924   GGCTCTCTAGCAAAC           GAAGGCGGAG CTA CTCCACCTTC           ATTTCAAGAGAGATC  85 168
CTRC55_02880 NONE
CTRC55_02885 NONE
CTRC55_02890  615882 ..  615896 +  -9.2  -3.21909   TCCATCTATTGAAGG               CGGGCG TAA TGCCCG               TAATTCTTTTTCTGT  75 50
CTRC55_02900  617798 ..  617813 +    -4  -4.68103   CTTTTTTCCTGTCCC              GTTCTT TCTC AAGAGC               TTTTGTTCAGATTGC  66 113
CTRC55_02905 NONE
CTRC55_02910  619429 ..  619442 +  -3.9  -2.72739   CTAATTCATCCTTTA               TTCTT TCCA AAGAA                CTTCTGTGACTTGGG  45 101
CTRC55_02915  620764 ..  620790 + -13.9  -4.30995   CGCAATGTTTGAAGC         CATCCCTTACT GAATA AGTAAGGGATG         TTCTTTTGTCCGGAA 100 51
CTRC55_02920  624563 ..  624577 +  -2.8  -2.90075   GTATTACCTTGATTT               TTTCCT CCT AGGAAC               TATAATTCGGGAGGG  43 77
CTRC55_02925  625208 ..  625221 +  -2.4  -4.36914   TCTCCTGCTACCACT               TCTC CTCATT GAGA                TTTTATCCACCCAGA  59 64
CTRC55_02930 NONE
CTRC55_02935 NONE
CTRC55_02940 NONE
CTRC55_02945  629627 ..  629647 +  -3.9  -3.06162   TTCTTGTGCAATAAA            TCAGAGAGA TCT TCTCACTGC            TATTACACTCCCATA  48 27
CTRC55_02950  629890 ..  629904 +  -2.1  -2.68093   CAAAGGATCCCTACC               TCGTC AGAAG GATGA               AATTTTTCAGTTTAA  40 11
CTRC55_02955 NONE
CTRC55_02960 NONE
CTRC55_02965 NONE
CTRC55_02970  633110 ..  633124 +  -2.8  -5.45802   GACCTTTGGATTTGT               GTGC AAATCAC GCAC               TTTTTGTTTTAGAGA  80 458
CTRC55_03030 NONE
CTRC55_03035  646117 ..  646127 +    -4  -3.34488   GAAATAATCGTCTCG                 TCTT ACA AAGA                 GTTTTTAGAGAGGTT  49 34
CTRC55_03040  647605 ..  647615 +  -2.6  -5.14965   CTTAGCCGCCGCAGC                 TTAA CTA TTAA                 TTTTTTGATGGAGAT  70 22
CTRC55_03045  649001 ..  649028 +    -7  -5.35815   AACTCAGCTTCAGAA        CCGTAGGCATCCT AAA AGGGC-CCTACGG        TTTTTCTTTACTCTG  91 68
        thrS  652237 ..  652269 + -12.1  -4.43397   TTCCTTATAGAAGGC      CGGGCTTGCATAG ATTCTGC CTATGCAAGCCCA      TTATTTCTTTTCACA 100 31
CTRC55_03060 NONE
CTRC55_03065 NONE
CTRC55_03070  654783 ..  654800 +  -7.1  -3.10975   TAATCTTCCTAACAA             TCATCTT TCTA AAGATGA              TGTTACATAGTCCCT  62 45
CTRC55_03075 NONE
CTRC55_03080  658181 ..  658191 +  -5.4  -3.88438   ATTAACCGTTCTAGA                 CAAG GAT CTTG                 TTATGTTTGATGTCG  63 174
         eno  659543 ..  659553 +  -5.4  -2.90982   TGCTTGAGGATTTTT                 CTCT GGG AGAG                 TATGTACAACTTTAT  53 100
CTRC55_03090  661605 ..  661628 +  -3.2  -3.70465   ATTTTTTCCTTTCTA          CTTCTTTATCG TGC CGTT-AAGAAG          CTTTTTTCAGTTATC  51 82
CTRC55_03095 NONE
CTRC55_03135 NONE
CTRC55_03140 NONE
CTRC55_03145  675020 ..  675034 +  -4.2  -3.14564   TTTTCATATTAGACT               GCAGGG AAA TTCTGC               TTGATGAAAGGCTCC  50 7
        tolB NONE
CTRC55_03155 NONE
CTRC55_03160 NONE
CTRC55_03165  678034 ..  678044 +  -3.2  -3.28924   AGTTAGCTGGACAAA                 CCAT TCC GTGG                 TTCTCAAAGAAGATC  47 108
CTRC55_03185  681839 ..  681855 +  -4.5  -3.31799   TTTTGTCATCCAAAG              GGATTTT ATG AAAATTC              TTATAGCCAGTTCTC  52 15
CTRC55_03190  682969 ..  682980 +  -5.8  -3.01712   CTTCCCCTGCGCGAA                CCGT AAGC ACGG                 TGTTCAAAAGAAGAA  54 519
CTRC55_03205 NONE
CTRC55_03210  686742 ..  686766 +  -9.3  -4.28361   CAAGAGAAGTTGTTC          TGGGCTGACAG AAG CTGTCAGATCA          TTTTAATAAGATTGA  85 106
        rpsT  694390 ..  694404 +  -2.8  -4.87389   AAGATTTTATTTGCA               TCGATT TAA AAGCGA               TTTCTTTTTACAATG  67 135
CTRC55_03255  695339 ..  695362 + -13.2  -5.95166   CACCACATCCTTGAA          GCTCGCAGGT ACAT ATCTGCGAGC           TTTTTTTTAATTAGA 100 51
CTRC55_03265  700638 ..  700667 + -13.1  -3.65827   AGTTAGACAAATAAA       GCAGCTTAAAAAT TTTT GTTTTTAAGCTGC        TTTCCCTCACGATTA 100 35
CTRC55_03285  707015 ..  707029 +  -8.6   -4.1822   AGATGTCCTAAGAGA               CTAGCT TAC AGCTAG               TTTCTTAGGATAGAC  79 22
CTRC55_03295 NONE
CTRC55_03300  710150 ..  710164 +  -4.2  -3.91984   TCTAGGAACATTTGC               GCAACG TTT CCTTGC               TTATTTACGACCTCT  59 414
CTRC55_03310  711779 ..  711795 + -10.1  -2.74192   ATAAAAAAAAGAGAC              GCCCACG TTC TGTGGGC              TCCTCTTCCAAAGTC  74 37
CTRC55_03330  714969 ..  714987 +    -6  -3.31248   TATTGTAAGCTAAAG             GAACCACA TAT TGTGCTTC             TTCTGGGAACTCTTC  57 436
CTRC55_03340  717688 ..  717712 + -12.3  -3.92542   AGGAGGTTACCACAT          TCTCTTTTGCG TAG CGTAAAAGAGA          TTCTTTGACGATAGA  95 71
CTRC55_03355 NONE
CTRC55_03360 NONE
CTRC55_03365  724613 ..  724642 +  -5.9  -4.15044   CTTCTAAAGGAGTGT       TTTTCAATAATGT CTGA GCTTTATTGAAAA        TTTCTTCAAAACAAG  68 481
CTRC55_03380 NONE
CTRC55_03390  736634 ..  736655 +  -2.3  -4.62471   ACGAGGACACCATCA           CAATGCGTAG TCT CTA-GCATCG           TTTTTGCGGCTTCAG  63 389
CTRC55_03405 NONE
CTRC55_03410 NONE
CTRC55_03415 NONE
CTRC55_03420  741491 ..  741516 +  -4.9  -2.86079   CTCTTTTCTGCATCT         GCATTCTTTTTT TTG AAAAAAGAG-GC         CTCTTTCTTGTACTC  50 71
        recA  742785 ..  742824 + -12.5  -4.77173   TATTCCCTATCGATT  CTAATCAAGGAAAAGAAG TTTTT CTTCTTTTCCTTGGT-AG  TTTCTTTTCTCCCCC 100 47
CTRC55_03440 NONE
CTRC55_03445 NONE
CTRC55_03450  746658 ..  746680 + -15.6  -3.28712   GGTTTCTATTATTAA           GACCTGGGCG TTG TGCCCAGGTC           TTGTGAAAAACGGGA 100 76
CTRC55_03475 NONE
CTRC55_03480  749827 ..  749862 +  -4.8  -2.78715   GTTAACATTTCTTAA    CGGTTCGG-AAGGTT GAATAAA ATCTTTTCCGAACCG    TATCATAGAAGGGTT  50 26
CTRC55_03485 NONE
CTRC55_03490  751245 ..  751268 +  -9.6  -4.71382   AGAAATTATGGAAGA          GCGGTAAACG TATA CGTTTACAGC           TTTTTGAGTCATTGT  90 19
        hemA  756462 ..  756482 +  -7.5   -2.5474   AAATGACTCTTTGAT            GCAGTGGCA CGA TGTCCCTGC            GTGTTGTCGATACGA  61 406
CTRC55_03515 NONE
CTRC55_03520 NONE
CTRC55_03525  759967 ..  759977 +  -3.2   -2.8547   GCTAGGACGTATCAA                 CCGT AAA ATGG                 TGTAATGTAAACGGT  44 10
CTRC55_03530 NONE
CTRC55_03535 NONE
CTRC55_03540 NONE
CTRC55_03545 NONE
CTRC55_03550 NONE
CTRC55_03555 NONE
CTRC55_03560  765294 ..  765306 +    -2   -4.0825   GAGAGTCCTCTGTCA                TTCT ACGTG AGAA                TTGTTTGCTTGCCGC  54 55
CTRC55_03565 NONE
CTRC55_03570  769710 ..  769752 +  -9.3  -4.87786   GTACACAGGGGGGAA GTCAAGATGGACTGGAGTTA GCCG TATCTCCGGTTC-TCTTGGC TTTTTATGGAGTTAG  91 102
CTRC55_03610  780330 ..  780341 +    -3  -3.53012   TTGCTCCTGTAAAAG                GTAA GGTA TTAC                 TTTGACAGGGAACGA  47 60
CTRC55_03615  781523 ..  781553 + -12.7  -3.65523   CAGTCCTTTCCTTGG       GTCTAGGGAGAGA CATCC TCTTTCCCTAGGC       TGTCTTTCTTTTTTT  95 182
CTRC55_03625 NONE
CTRC55_03630 NONE
CTRC55_03635 NONE
CTRC55_03640  786338 ..  786358 +  -6.9  -3.58177   CTTCCGTTTTCAAGA            GAGATGC GGAGTGG GCATCTC            TTGATTTGCATTATA  67 45
CTRC55_03645 NONE
CTRC55_03660 NONE
CTRC55_03665 NONE
         pgk  792580 ..  792596 +  -7.2  -6.23545   CTTTGTTAATGAAAA              GCCCTG TTTAT CGGGGC              TTTTTTTTGTTTAAA 100 58
CTRC55_03675 NONE
CTRC55_03680 NONE
CTRC55_03685  796643 ..  796654 +  -5.8  -3.44051   TAGAGCATGAATATA                CGCA GCTT TGCG                 TTCTCCTAATCCACA  59 382
CTRC55_03700  799407 ..  799419 +  -3.4  -4.23674   GTCGAATGGGACAAT                CGTT AGGAA AACG                TTTCTCTTCATAAAA  60 0
CTRC55_03705  800863 ..  800883 +  -3.9  -5.70761   CAATATAAGATCTTA            GCCCTCG TATTGCT CGAGTGC            TTTTTGTTTTCTTTT  89 66
        secA  804007 ..  804032 + -13.4  -4.78848   AGGCTTGTCAAACTA         GGCAATCTCC TTAATT GGAGATTGCC          TTTTCTATTTAGAGA 100 42
CTRC55_03750 NONE
CTRC55_03755 NONE
CTRC55_03760  817700 ..  817713 +  -3.9  -5.93252   ATACTATTGTTTTTC               TGTTT TAAA AAACA                TTTTTTATTTTTAAA  93 76
CTRC55_03765  820067 ..  820088 +  -5.9  -3.28924   TAGATTTAAATAAAA           TCGTTTTAG AGGG CAAAAACGA            TTATGAGAAACCATC  58 28
CTRC55_03770  821378 ..  821401 +  -7.6  -3.30771   CGCTGGCTTCCCCAT          CTTCCTTCTAC GTT GTAGAA-GAAG          TTATCGGCGATATAG  66 140
CTRC55_03810  828666 ..  828690 +  -6.4  -3.19192   GTCATGGGAGAGAGC          TCCCCACTCT TCTGT GGAGTAGGGA          TTCCCTTCGCTAAGC  57 358
CTRC55_03835  832030 ..  832049 +   -10  -6.23545   CCTTAAGAACAAAAA            GAGGGAGG TCTT TCTCCCTC             TTTTTTTTGTTTAGA 100 59
CTRC55_03840 NONE
CTRC55_03845  833242 ..  833258 +  -2.9  -3.89822   TTAGTATTTTGCAAA              GCGTCGA CTG TAGATGC              TTTGTAAAATACCTA  53 47
CTRC55_03870  839729 ..  839747 +  -4.4  -2.57132   GAGGTTTGTGTTATA             CTCTGCGC ACA GCGAGGGG             ATTATAGACAAAGAA  47 55
CTRC55_03875 NONE
        ribH  841547 ..  841565 + -13.2  -5.98781   GTAGAAAAAGAAGAA             CGCCTGAT CAA ATCAGGCG             TTTTTTTTGATTATA 100 47
CTRC55_03890  843987 ..  844017 + -12.5  -4.89567   AAGGCCATTCTAAAG       GCCCCCTTCCCCC GGATA GGAGAAAGGGGGC       TTTTGTATTTTCCGC 100 40
CTRC55_03895 NONE
CTRC55_03900  846039 ..  846053 +  -8.6  -2.60199   TAGTGATAGCAGAGC               TCTTCC CCA GGAAGA               ATGTCTTTGATTGCC  63 110
CTRC55_03945  863026 ..  863036 +  -5.4  -3.51708   AAGATGAAGTCGTTT                 GCTT GAT AAGC                 TTGGTTTCAGGGATC  57 463
CTRC55_03980  879932 ..  879961 +  -7.2  -5.28831   AGAAAGAGAATCATC       GGCTTGCC-CAAA CTCCA TGTGCGGCAAGCC       TTTTGTTTTCTTGAT  91 70
CTRC55_03990 NONE
CTRC55_03995  881555 ..  881569 +  -8.5  -3.61398   AAATAAAAATTAGAA               GGGGC ATTAC GCCCC               TTCTTCAAGAAGGCG  73 35
CTRC55_04015  886138 ..  886156 +  -3.2  -2.81888   GGTAAAAGATCAGAA             TTTCTTTT TAG AATAGAAA             TAGTTAACTTTCAAG  44 40
        mraY NONE
        murD NONE
CTRC55_04030  889279 ..  889306 +  -4.2  -4.07859   CGAATTCGATAAATC        TCTGGAATTATT ATGA AATGGTTCCTGA         TTTCCTGTTTATTAG  61 29
CTRC55_04035 NONE
        murG NONE
CTRC55_04045  894048 ..  894073 +  -2.5    -5.626   TGTGAGAGAGCCGTT         TTCAGGTTGAG CAAG CTCAACAAGGA          TTTTTTTCTGCAATC  84 242
CTRC55_04060 NONE
        miaA  897041 ..  897076 +  -5.4  -2.81223   AATGCGGTAATAGAG    TTCGGGAGACGCTT GGTGAGGG ACGCGTCTCCCTAG     TGCTGTATTATTAGG  50 306
CTRC55_04075  899618 ..  899646 +    -9  -5.87688   AGGAGTAAAAACAAG        TAGTCAAAAGGT GAAGA GCCTTTTGGCTA        TTTTTTTTAAATTGT 100 54
CTRC55_04080 NONE
CTRC55_04085 NONE
CTRC55_04090  902148 ..  902185 + -12.8  -5.01546   AAAAAAACTTGGTTA   GGAAGGGCCGTTGTGG AATCTC CCACAACAGCCTTTTC    TTTTTCTGTCGATTT 100 55
CTRC55_04105  904298 ..  904312 +  -3.5  -3.48276   CGATATATCTGTAAC               GAGGC CTCCA GCTTC               TTCTATAAGAAACAC  51 207
CTRC55_04115 NONE
CTRC55_04120  907833 ..  907851 +  -2.4  -3.76186   TGAGGGAAATGGGTT             TTGAAGGA AGC TCTTTCTA             TTGATTTTATCACTA  50 68
CTRC55_04125  909097 ..  909116 +  -8.6  -3.03865   CCAAATTTTGTTTAA            TCAGTGTG TGTA CACGCTGA             GTTTCCTTTAAAGTA  69 156
CTRC55_04140  912502 ..  912531 + -12.4  -3.63744   TTCTCGGATTTCTAA       GAAAGAGAAAAC GATCCA GTTTTCTCTTTC        TATTTTGGAGAAAGC  90 87
        lysS  914264 ..  914310 +  -7.6  -2.79796   TTAAAGTTTTTTCAC TTTCATCCC--GGTTTTGCCAT CTTCA ATGGCAAAACCTCGGGATAAGA TCTCATCACGTAGAC  62 37
CTRC55_04160  917073 ..  917101 + -11.1  -5.82388   ATCTAGTATTCCTCC        CCATTCCATGC CTCTATA GCGTGGAATGG        TTTTTTTTAGGATTT 100 54
        rpmJ NONE
        rpsN  918590 ..  918605 + -10.4  -5.56568   TAGGACTTGTGTTGA              GCCCCT TGAA AGGGGC               TTTTTTTACTCGTCT 100 38
CTRC55_04185  919145 ..  919155 +  -2.6  -4.15222   TAAGTTCGTTGTAAA                 TAAT CAC ATTA                 TTTCTTAGAGCAGCT  55 7
CTRC55_04195  920261 ..  920276 +    -9  -5.95166   AACTGAAGAATAAAA              GGCTCT GTAT AGAGCC               TTTTTTTTGGTTAGG 100 28
CTRC55_04210 NONE
        dnaG  926783 ..  926796 +  -3.1  -4.38154   ATTAGCTCGTTAGTT               CTCAA TTTA TTGGG                TTTTATGAGAAGTCT  62 101
CTRC55_04220  927102 ..  927119 +  -7.7  -5.72207   TCAAGAGTCTATAGA             CTGGGAA TTTC TTCCCGG              TTTTTTTAATTTAAG 100 48
CTRC55_04225  927722 ..  927747 + -14.9  -5.01422   CTTTATAAAAAAAAG         GCCTTCTCTTT GTGA AAAGAGAAGGC          TTTCTTTTTGTCTGG 100 51
CTRC55_04235  931976 ..  931989 +  -5.3  -3.38581   ACGGTAGGTTGTCAC               TGCTT CCAA AAGCA                TGTTTCGGAATTCAT  55 149
CTRC55_04245 NONE
CTRC55_04250  934987 ..  935001 +  -5.8   -3.1505   GGGATTTACTGTTCA               CTTTTT GAA AAAAAG               TTCCTGAAAAATAAT  57 48
        rpsF NONE
        rpsR NONE
        rplI  936238 ..  936270 +  -3.4  -6.47325   TTAAACTTTTTGTTT     GTTG-GGGGAAGAGA TTCT TTTCTTCCCCACCTC      TTTTTTTTATTTTTT 100 37
CTRC55_04270  937406 ..  937426 +  -2.5  -3.04398   TCGATAGAAAAAAAC            AGCTCTG CCCCCTA CAGAGCC            CTTTTAAAGGGGGAC  43 275
CTRC55_04305  945484 ..  945522 +  -8.2  -4.68593   TGTCCCTTGTCTGTC   GCGGTATATTTTGGGGAG TCG TTCCACAAAATGCATCGC   TTTTTGAATCCTGGG  86 161
        rpmF NONE
CTRC55_04315  946783 ..  946794 +  -3.6  -3.62695   GATCACCTTTTCAGT                GGCC TAAG GGTC                 TGTTCTTTATAAAAA  53 44
CTRC55_04320  951608 ..  951635 + -12.9  -6.11243   ACAGCAACCATTCTA        TCCCTAATCTC CCATCA GAGATTAGGGA         TTTTTTTTATTAGCT 100 57
CTRC55_04335  952609 ..  952639 +  -3.3  -5.86332   TTGTTTTTTTAATAG      AAGCCTGGCCTGTA GTAA TA-AGACCAGGCTA       TTTTTTTTGGATTCG  91 63
        glmM NONE
CTRC55_04355  956779 ..  956798 +  -6.5  -5.47431   TGGCTAAATCTGTTA            CTGTAGA GTAAAA TCTACAG             TTTTTTCTCTCTTGA  89 15
CTRC55_04360  958110 ..  958139 + -10.7  -4.03413   CACTTCAAGTCTCAA       GCTCGCATTCAGG ATTT CCTTTATGCGAGC        TTTCTGTAAACAGAT  85 47
CTRC55_04365 NONE
CTRC55_04370  959501 ..  959511 +  -3.2  -3.54653   TTTTAAATTAGGAGA                 TCTC CAT GGGA                 TTGTATGATCGCGAT  51 62
CTRC55_04375  960258 ..  960284 + -12.5  -5.28176   TTCTAGGAAAAAAAA         GAGGTATTTAG AGTTC CTAAATACCTC         TTTTTTATGGGTGAA 100 61
        sucC NONE
CTRC55_04390  963330 ..  963341 +    -3  -3.43774   TCAGAGTAGTCTCCT                TGAT TTGC ATCA                 TTAGATTTTGTATGC  47 61
CTRC55_04395  964963 ..  964980 + -11.3  -6.41805   AGCTAGTCTAGTATG             GGGACTC AATC GAGTCCC              TTTTTTTTTTAATAA 100 62
CTRC55_04400  968058 ..  968071 +  -2.4  -3.53012   GCATTTTAAATAAAA               CCAA AAGTTA TTGG                TTTGAGGAAGGAGGC  46 32
CTRC55_04415 NONE
CTRC55_04420  975023 ..  975044 + -10.2   -5.9873   TCAAAATAGGAGAAA           GCCTCAAC CATAGA GTTGAGGC            TTTTTTTTGTCATAC 100 49
        trmB  976004 ..  976029 +  -4.7  -3.07655   TAATACCCCATGTGA         CTCGCATCCTT TATA AATGATGTGGG          ATCTTTTTTCAAGAG  52 96
CTRC55_04430  976666 ..  976680 +  -2.1  -5.08011   ACGGACTTCTTTATG               TAAGG AAATA CCTTG               TTTTTTAAGAGTTTT  69 58
CTRC55_04440  978010 ..  978023 +  -6.7   -2.6547   CATCAGCAGGCTAAC               GAGAG AATC CTCTC                CTTCTGGATCTATTT  56 394
        infC NONE
        rpmI NONE
        rplT NONE
        pheS  980837 ..  980874 +  -6.3  -6.22691   TCCTTTTTACGAGAA   CCTTTTGGGGTAAGAGT TGAG GCTCTTCCTCTGAAGGG    TTTTTTTTGTTCTTA 100 129
CTRC55_04475  983463 ..  983475 +  -7.7  -3.38604   TCATGTCAAAGAACT                GTGTC AAA GACAC                TTCGTGATTTTCATC  66 468
CTRC55_04490  986315 ..  986330 +    -4  -3.86015   ACTTCTTGTTTTTTA              TCTCTA TAAT TAGAGG               TTTATAAACAAAATA  55 93
CTRC55_04495  989172 ..  989195 + -12.5  -6.06529   TCTGGAGGTTTAGGA          GAGAGCCCT TTTATT AGGGCTCTC           TTTTTTTTGTGTGTG 100 48
CTRC55_04510 NONE
CTRC55_04515  992944 ..  992959 +  -3.2  -2.75481   ATTAAACTTTCTGGT              CCGAAG AAAG CTTGGG               TGCTTCCAATTAACC  43 253
CTRC55_04540 NONE
CTRC55_04545  996873 ..  996893 + -11.3  -3.18884   TTCGTGCCTCCCAAT            GGTTTATTG GGT CAATAAACC            CTTCTTTCTTTCCGA  84 86
CTRC55_04590 1006215 .. 1006238 +  -3.9  -4.57073   TCTGCCTATTCTAGG          CCCCTTTTT GAATGG AAAAATGGG           TTTTTGGAGAACATC  66 92
CTRC55_04595 1008090 .. 1008119 + -12.3  -4.03586   GTTCATAGTAAGAGG       GGGCTTTGCGGATT TAT AGTCC-CAAAGCCC       TTGTTGTGTTTAAAC  95 52
        ispH 1009088 .. 1009116 +    -6  -2.71859   GAATTATAATTAGAG        AAGTCAGATGAG TTTAT CTCATCTGACGG        AATTTTTCTCACTTA  54 32
CTRC55_04635 1015248 .. 1015285 +  -4.9  -6.50115   AACGATCGAGTTTTT   TCCCTCTGATAGACA AAAATACA TGTTCTTCAGAGGGA    TTTTTTTTTTGTAGT 100 270
CTRC55_04645 NONE
CTRC55_04650 1019350 .. 1019372 +  -2.1  -4.41114   TCAGCTACTCTGATT          TTCT-CTGTA ACGC TACAGTAGGA           TTTGTTCTCTAATCC  59 5
CTRC55_04675 NONE
CTRC55_04680 1034400 .. 1034436 +  -3.7  -5.86061   CTAGAATTTTAGAGA    GCAGGATCTTTTGTTTG ATT CAAACAAAAGGATGAGC    TTTTTTTTCATAAAA  93 168
CTRC55_04685 1035301 .. 1035324 +  -9.7  -4.39426   AGAAAAAAATGAAAA          GTCTTAGAG AAGGGC CTCTAAGAC           TTTTCTCAAGCTCTA  89 58
CTRC55_04695 1038162 .. 1038191 +  -3.1  -2.72851   TATCAAATTAGATAG       TTTTTAAAAAATT AAAT AATCTTTTAAGAA        ATCTTATATTTATTA   0 59
CTRC55_04690 1035295 .. 1035330 - -12.8    -5.626   GACGTGAGAAAAAAA    TGAAAAGTCTTAGAGA AGGG CCTCTAAGACTTTTCT     CAAGCTCTAAAACGC 100 58
CTRC55_04670 NONE
CTRC55_04665 1021980 .. 1021995 - -11.8  -3.52341   ACGGGAAGAGGATAA              GGGGGC CGGA GCCCCC               TCTATTACTCTAGAA  85 35
CTRC55_04660 1020563 .. 1020592 -  -5.2  -4.40199   AAAAATAGTAAGAAA      TAAGAGCGACCATC TCTC GATGG-C-CTCTTA       TTTAAAAAGATTTTT  67 56
CTRC55_04655 1019209 .. 1019230 -  -2.3  -3.55444   GGGGGATCGGGGAAA           GGTTTTCGAG AGC CT-GAAATCC           TTACACCTGAAATCG  47 176
        xerD 1014959 .. 1014969 -  -3.2  -4.15044   TGCCCTTGTAAGAAA                 CCTG TTC CAGA                 GAAAAAGAAGAAAAA  58 56
CTRC55_04625 NONE
CTRC55_04620 NONE
CTRC55_04615 NONE
CTRC55_04610 NONE
CTRC55_04605 1009090 .. 1009114 -   -13  -3.63046   ATTATAATTAGAGAA          GTCAGATGAG TTTAT CTCATCTGAC          GGAATTTTTCTCACT  95 44
CTRC55_04585 1002359 .. 1002397 -  -7.4  -3.00404   ATACGAGAACAAGTA  TGTCGCCCGCCCCAAGT AATTCA ACACGGGGCGGGAGA-A   GATCAGAGACTTGTT  61 53
CTRC55_04565  998976 ..  999009 -    -6  -3.99985   TATATATTGAAAGAA     GGGATCTTTCAGTC CTTTGT AACTGAGGGATCCC      CGAAATCGTCACACA  66 145
CTRC55_04560 NONE
CTRC55_04555 NONE
CTRC55_04550  996377 ..  996391 -  -5.7   -4.4261   CTGTGAAGAGGAAAA               TAGCG GGAAG CGCTA               TGCTGAGGAGTGCTT  73 403
CTRC55_04535 NONE
CTRC55_04530 NONE
CTRC55_04525  993386 ..  993401 -  -4.7  -3.66288   TATCGGGGAAGATAA              CTCTC ATGAAG GAGAG               GCCTTTTTACAAAAG  57 151
CTRC55_04520  992325 ..  992342 -  -5.7  -3.54543   AGGGAGTTGGTTAAA             TGTTTTT TTAG AAAAACA              TCCTTTCCATCAAGT  59 371
        rpsO NONE
CTRC55_04500  989311 ..  989334 - -12.6  -5.64304   CAAGACAATAAAAAA          GGCTAAGAAA AACC TTTCTTAGCC           TTGTTTTTCAACGAA 100 55
CTRC55_04485 NONE
CTRC55_04480  982628 ..  982650 -  -2.8  -2.76696   CCTTCTTTGAAGAAC           GTTTTCTTCT CAA AGAAAAAAAT           CTTATTCAAAAATGA  42 392
        nusB  977551 ..  977568 -  -7.7  -3.55368   AGGGAAGCGACACAA             GCCCAAG ATAT CTTGGAC              GGAGTCGCTTCCCTT  70 95
        murB  976585 ..  976601 -    -3  -3.56092   CCACTATTCTGTAAA              TAGAAG GAATG CTCCTA              GGTTATTTCTTTTTC  49 54
CTRC55_04410 NONE
CTRC55_04405  968058 ..  968071 -  -2.4  -4.88918   GCATTTTAAATAAAA               CCAA AAGTTA TTGG                TTTGAGGAAGGAGGC  66 19
CTRC55_04380  960258 ..  960284 - -13.2  -5.86061   TTCTAGGAAAAAAAA         GAGGTATTTAGA GTT CCTAAATACCTC         TTTTTTATGGGTGAA 100 61
CTRC55_04345 NONE
CTRC55_04340  952536 ..  952552 -  -2.2  -5.61881   TTCGAAAAAGAAAAA              CATGGT ATCAA ACCAGG              AAGACGTGGTTCGAT  79 128
CTRC55_04330 NONE
CTRC55_04325  951208 ..  951245 -  -9.9  -3.88232   GGCTTTACAGAACAA   GGAAGAGAAGCGCGTTC TTTT GAAGACGCTTCCCTTAC    CAATATCACCATTCC  84 429
CTRC55_04300  944578 ..  944602 -  -2.9   -5.1101   CGATTAGGTAAAAAA          TTCTACAAAAA TGC TTGTTGTTGAA          TAGTTTAATTTAGAA  70 157
CTRC55_04295 NONE
CTRC55_04290  941848 ..  941876 -  -3.9  -3.42459   CATTGATAACAGGAA       GGTGGTTGTCCA TTTATT TCG-CAACCACC        GGGTTGAGGCTTTTA  51 61
CTRC55_04285  938937 ..  938975 - -14.8  -2.62761   ATAAAGAAGCAAGAG   GTTTTTCTCGGATGAAGA ACC TCTTCATCCGAGAAAATG   TAAGTACAAGAATGT 100 40
CTRC55_04280  937407 ..  937425 -  -6.7  -4.50122   CGATAGAAAAAAACA             GCTCTGC CCCCT ACAGAGC             CCTTTTAAAGGGGGA  75 59
CTRC55_04275  936929 ..  936948 -    -2  -4.96996   TTGAAAGAAAAGAAA            CATTGGCT AGAA AGCCTGTG             GGCGGAACTTCCTGT  68 203
        glgA  931828 ..  931849 - -14.5  -5.00895   CTTATTACAGAAAAA           TGACTCGCC GGAT GGCGAGTCA            TAGGGAAGTTTATTG 100 35
CTRC55_04230  927721 ..  927748 - -11.4  -5.93809   CCTTTATAAAAAAAA        GGCCTTCTCTTT GTGA AAAGAGAAGGCT         TTCTTTTTGTCTGGA 100 56
CTRC55_04205 NONE
        uvrC  920261 ..  920276 -    -9  -4.91987   AACTGAAGAATAAAA              GGCTCT GTAT AGAGCC               TTTTTTTTGGTTAGG  91 53
CTRC55_04190  919217 ..  919241 -  -3.7  -3.85698   CTTTTTCTCGAGAAA          CAAAAACAATC AGG AATTACTTTTG          CTTAGGATGAAGAAC  55 17
CTRC55_04180  918399 ..  918413 -  -6.4  -4.46976   AGGAAGAAAGAGAAA               GAGCTC GGG AAGCTC               TCAATAAAATGAGAA  74 223
        rnpA  916741 ..  916751 -  -5.4  -3.32521   ATTAGATCCTGAGAA                 TGAG CAG CTCA                 CGCATTTCACAGTGG  55 396
CTRC55_04155  915812 ..  915828 -  -5.2  -3.53444   GCATTCCTTGTTAAA              GGAATA GAAAA TATTCC              AAAATCAGAAGCATA  56 4
        cysS  914247 ..  914270 -  -2.5  -5.69379   ATAGAAGCAAAAAAA          GATTAAAGT TTTTTC ACTTTCATC           CCGGTTTTGCCATCT  85 4
CTRC55_04135 NONE
CTRC55_04130  908635 ..  908655 -  -8.3  -3.31799   GAGAACTTGCGAGAA            CACGATTAC GTC GTATTCGTG            ACTATTTTGCTCAAA  70 255
CTRC55_04110  903867 ..  903884 -    -2  -4.58213   CAATCAATTAGAAAA             TC-CTGC TATAG GCAGAGA             ATTGGTTGCTAGAGG  63 223
CTRC55_04100  902834 ..  902850 -    -3  -2.61997   TTTTAGACATAAGAT              CACTCT CTATT AAAGTG              TTTTATGCGCAATTA  41 28
CTRC55_04095  902152 ..  902181 - -10.7   -3.1506   AAACTTGGTTAGGAA       GGGCCGTTGTGGA ATCT CCCACAACAGCCT        TTTCTTTTTCTGTCG  78 43
CTRC55_04070  896292 ..  896305 -  -3.9  -3.47941   TACCAAGCATGATAA               GAATA AAAT TATTC                GTGCTTTAGAAATTA  51 485
CTRC55_04055  894425 ..  894438 -  -3.9  -4.60041   ATTTATGGTGAAAAA               TTCTA GAGA TAGAA                ACCTCTTCATTTACG  66 32
CTRC55_04050  893832 ..  893860 -  -7.6  -3.18264   TTCGCTATTCAGTAA       GCTCCAAC-AAGAG AGA CTCTTTGTTGG-GC       AATCAAGCTAATCAT  65 33
CTRC55_04010  882748 ..  882762 -  -8.6  -2.66517   ATTTATTAACAAGAG               CATACC CTC GGTATG               ATAGGCGGATAGTTA  67 48
CTRC55_04005 NONE
CTRC55_04000  881552 ..  881572 - -13.3  -3.50051   TCAAAATAAAAATTA            GAAGGGGCA TTA CGCCCCTTC            TTCAAGAAGGCGTTC 100 14
CTRC55_03985  879764 ..  879798 - -12.2  -3.51934   GGGTTGGTACAAATA     CATCGGTAGCAATGGC TTA GCCATTGCCATGGATG     GGTTTGGAATGTCCG  91 111
CTRC55_03975  872166 ..  872180 -  -5.6  -3.65991   ACTTTTTGAAGAGAA               GAGGCC CTC GGCTTC               AAGAAGGAATATACT  59 57
        alaS NONE
CTRC55_03965 NONE
        hemE NONE
CTRC55_03955 NONE
CTRC55_03950  862490 ..  862504 -  -4.3  -4.71061   AGCCACATTGAAAAA               CGTTT CTTTC AAACG               CGACCAAGACAGGAA  68 101
CTRC55_03940  859294 ..  859320 -  -9.4  -3.70469   AATGAGAAGGGGAAA         GAGGGCCCTGTT GAT AAAAGTGCCCTC         TATAAAAAAGAGAAA  78 52
CTRC55_03935  857957 ..  857979 - -10.7  -3.75738   CAGCATTAGGAATAA           GGCTTTCTT GTTTT AAGAAAGCC           TTTCTAAGAGCACAA  83 15
        yajC  857478 ..  857503 - -14.1  -3.47322   TTTTATTACAAGGAA         GCAAAGCCCAA GGAC CTGGGCTTTGC          TGAAAGGAGCTCGTT 100 42
CTRC55_03925  855600 ..  855639 - -17.2  -4.84527   GTCATAGACTAAAAA  GGAGAAGGGGGTAGCCGC TAAC GCAGCTACCCCCTTTTCT   TTTCTCTAAAATACC 100 468
CTRC55_03920  850074 ..  850115 -  -8.9  -3.57144   TTCGCCATGGTGAAA CTCCCCAACTAGCAGAGCG TGCAGG CGCTCTAC--GTTGGGGAA AGAGAAGTATAATGA  74 78
CTRC55_03915 NONE
CTRC55_03910 NONE
CTRC55_03905  845453 ..  845482 - -14.4  -3.86266   ACAGTAGTACAAGAA       TAGGGCCACGCT TTACAG AGCATGGCCCTA        AATACAGGAGACCTC 100 506
CTRC55_03885  841544 ..  841568 - -11.5  -4.52873   GGTGTAGAAAAAGAA          GAACGCCTGAT CAA ATCAGGCGTTT          TTTTTGATTATAAAT 100 33
CTRC55_03865 NONE
CTRC55_03860  836437 ..  836447 -  -5.4   -2.8806   AAAGTTGCGGAGACA                 TAGG CCA CCTA                 CTAAGAGTATGAACT  52 39
CTRC55_03855 NONE
CTRC55_03850  833181 ..  833197 -  -4.4  -3.77491   CACGAAAGAAATCAA              GCATCT TATCC AGACGC              TACCGTTATGGGGGC  57 55
CTRC55_03830 NONE
CTRC55_03825 NONE
CTRC55_03820 NONE
CTRC55_03815  828265 ..  828284 -  -2.2   -5.3798   GAACAAGAAGAAAAA            TTAG-CATC CGG GATGACCAA            GAAGCTCAAAAGGGG  75 149
CTRC55_03805 NONE
CTRC55_03800 NONE
CTRC55_03795 NONE
CTRC55_03790 NONE
CTRC55_03785 NONE
        gpsA  822477 ..  822499 -  -4.2  -3.05384   TCTTTTCTCATTGAA           GAAGAACCTT ATA AATATTCTTC           TTTTGTATCACGTTG  49 11
CTRC55_03775  821277 ..  821316 - -16.7  -3.88062   AGACATGAGAGGAAA  TCTTCTCTTAATCTCCC TTGAGG GGGAGGTTAAGAGAAGA   GGGTTCGGGGGGTTA 100 38
CTRC55_03745  810903 ..  810915 -  -3.4  -3.68962   CGTGAAGACACAGAA                TACC CATTT GGTA                AGTTATCCGGGAAAA  51 176
         tig NONE
        clpP NONE
        clpX  807527 ..  807547 -  -3.9  -3.37091   ATTCCTAAAAGTTAA            GCAATCGCC TCT GGTGATTTC            TGAATAATGACCGGA  49 1
CTRC55_03725  806234 ..  806252 -  -5.4  -4.05629   ATTAAATCTAAAGAA             CTAAAATA AAC TATTTCAG             AATGTTTTATCGGAG  65 49
CTRC55_03720 NONE
CTRC55_03715  804007 ..  804032 - -13.4  -2.90615   AGGCTTGTCAAACTA         GGCAATCTCC TTAATT GGAGATTGCC          TTTTCTATTTAGAGA  95 77
        trmE NONE
CTRC55_03690  796008 ..  796034 - -13.8  -3.41051   GCATTTTTAGCAGAA         GTTGTGTTGCAC GTG GTGCAACACCAC         ATTCATTTAAATGCA 100 274
CTRC55_03655 NONE
CTRC55_03650  786768 ..  786799 -  -3.8  -4.67608   GACTTTAATAGAAAA      TATCCAAAGGGT AAACCTGA ACCCTTTAGAAA       TGGCAGAAGCTTTTC  67 517
CTRC55_03620  781096 ..  781107 -  -5.8  -3.30797   GTTAAATGCAGAAGA                TGCG GATG CGCA                 TTTTTATATAGGATT  57 487
CTRC55_03605  775164 ..  775189 - -13.3  -5.75342   TTTTTGCAAAAAAAA         CTGGACCCGAC CGAA GTCGAGCCCAG          AAACACGGATAGTGT 100 98
        rpsB NONE
         tsf NONE
        pyrH NONE
         frr  771899 ..  771909 -  -5.4  -3.59023   TGCACAGAAGCATAA                 CTAC ACC GTAG                 CTAACTCTGCTTCTT  59 15
CTRC55_03580 NONE
CTRC55_03575  769794 ..  769808 -  -6.4   -3.2614   CAGTTGGTAGAGCAA               CGCATT CGT AACGCG               TAGGTCGTCGGTTCG  61 164
CTRC55_03510  756339 ..  756353 -  -2.1  -3.77219   ATGATGGAATGCAAA               GCCTT GATAG AAAGC               AGGGGAGGGGGATCT  50 225
CTRC55_03500 NONE
CTRC55_03495  751245 ..  751268 -  -9.6  -3.14454   AGAAATTATGGAAGA          GCGGTAAACG TATA CGTTTACAGC           TTTTTGAGTCATTGT  74 147
CTRC55_03465  747928 ..  747944 -  -3.7   -2.8806   AAACTTCGTCATACA              GAAACAG CAT CCATTTC              TTGAATGTAGGTGAA  45 2
CTRC55_03460 NONE
CTRC55_03455  746658 ..  746680 - -14.9  -3.21099   GGTTTCTATTATTAA           GACCTGGGC GTTGT GCCCAGGTC           TTGTGAAAAACGGGA 100 53
CTRC55_03435  742799 ..  742811 -  -3.4   -4.4959   TCTAATCAAGGAAAA                GAAG TTTTT CTTC                TTTTCCTTGGTAGTT  62 3
CTRC55_03425  741447 ..  741471 -  -5.2  -3.66378   TATATCTCACTTAAA         GAGCTGTTTTA CGTA TAAAA-AGCTC          CCTCCTCTTTTCTGC  57 84
CTRC55_03400 NONE
CTRC55_03395  736139 ..  736150 -  -4.4  -4.91873   TATATTAAGGAAAAA                GGAT TGCA ATCC                 CCTCAAAATAAAAAA  74 175
CTRC55_03385  731548 ..  731558 -  -3.2  -3.76232   GTTTTAAAGAGACAA                 CTAG GGA CCAG                 CTTCTCTTCTCCCAA  53 454
CTRC55_03375 NONE
CTRC55_03370  723816 ..  723828 -  -4.9  -3.41051   TTATCTCTATCAGAA                CAAAA TGA TTTTG                CTCTTCGTGGAATTG  56 370
CTRC55_03350 NONE
CTRC55_03345  717550 ..  717563 -  -3.8  -3.13867   TTAGCGATTAAGAGA               GCTG GTGCAA CAGC                TATAATTAGTTACGC  48 130
CTRC55_03335  714562 ..  714573 -    -3  -2.52742   ATTTGTTTATAACAG                GTTT CCAA AAAC                 TTATATTCGTTGTAT  41 191
CTRC55_03325  713427 ..  713440 -  -2.3  -3.66999   AGCTAGGTATTTAAA               CACCC CCTG GGGTT                TTAAGAAAGCTTTGT  48 26
CTRC55_03320  712747 ..  712763 -  -9.5  -3.14132   TCTTTTTCTCATCAA              CCTTTGT TTG ACAAAGG              TTGTTTCTTAGTAAA  74 33
CTRC55_03315  711774 ..  711800 - -10.1   -5.9873   CCAGCATAAAAAAAA         GAGACGCCCAC GTTCT GTGGGCTCCTC         TTCCAAAGTCTTCTG 100 65
        rpsD  709720 ..  709737 - -12.7  -5.86061   CTTTATGAAAAAAAA             GCCTCGC AAAA GCGAGGC              TTCAAAGAACATATA 100 59
CTRC55_03290  707003 ..  707041 - -14.8  -4.16307   CTTGGAAGAAAAAGA   TGTCCTAAGAGACTAGCT TAC AGCTAGTTTCTTAGGATA   GACTGATGCCCTTTC 100 10
CTRC55_03280  705428 ..  705455 - -14.2  -5.83226   AAGGCAATAAAAAAA        GCCCACACCC GTTATTTT GGGTGTGGGC         TCTTAAAAGACTATC 100 51
CTRC55_03275  703360 ..  703388 - -17.7  -5.79595   TTTGAAAAGAAAAAA        GAGCCAAAAAAGA AAT TCTTTTTTGGCTC        CCCCTCAATTCACAA 100 55
CTRC55_03270  700638 ..  700667 - -12.4  -4.63044   AGTTAGACAAATAAA       GCAGCTTAAAAA TTTTTG TTTTTAAGCTGC        TTTCCCTCACGATTA 100 50
CTRC55_03260  694918 ..  694928 -  -5.4  -3.76224   CGTTTAGCCAGCAAA                 GTTC TAG GAAC                 CGTGAAATTCATGGG  61 466
CTRC55_03245 NONE
CTRC55_03240 NONE
CTRC55_03235 NONE
CTRC55_03230 NONE
CTRC55_03225 NONE
CTRC55_03220 NONE
CTRC55_03215  686719 ..  686746 - -14.3  -5.34381   AAATGGAAATAAAAA        GCCCAGAACAA GAGAAG TTGTTCTGGGC         TGACAGAAGCTGTCA 100 48
CTRC55_03200 NONE
CTRC55_03195  681973 ..  681987 -  -5.6  -3.90856   AACCCCCTAAGGAAA               CTGGCG AAA CCCCAG               AAGAAAATGCTATTC  66 487
CTRC55_03180  680433 ..  680443 -    -4  -2.94199   TATCTATCAAGCATA                 TTCT GGG AGAA                 GGAAGGGTTGTCGCT  47 6
CTRC55_03175  678686 ..  678697 -    -3  -4.30833   TAAATGATCAAGAAA                TTCT CCTC AGAA                 AAGAAAAAACCTTCC  58 71
CTRC55_03170  677466 ..  677478 -  -3.4  -4.06993   TTACAGATCAAAGAA                TTCG CCTTC CGAA                AAAGAAATAGCTGCT  57 495
CTRC55_03130 NONE
CTRC55_03125 NONE
CTRC55_03120  669763 ..  669778 -  -6.2   -3.4647   CGGAAGAGCTAAACA              GGTAAT CTCA ATTACC               TTCTAGACCAGGAAT  60 28
CTRC55_03115 NONE
        sdhA  667200 ..  667210 -  -2.6  -3.86822   GAACGCCTCTATAAA                 TATT CAA AATA                 AATGTCTCTTTCAAA  51 49
        sdhB  666405 ..  666415 -  -5.4  -4.69053   TACCATGGAATAAAA                 TTGC GAT GCAA                 TCTTCGAAACTTAAG  74 67
CTRC55_03100  663269 ..  663281 -  -2.7  -3.34043   CTCACGATGTCAGAA                CAACA ACG TATTG                AGACCGGAGATATTC  46 240
CTRC55_03050  649001 ..  649028 -    -7   -3.3164   AACTCAGCTTCAGAA        CCGTAGGCATCCT AAA AGGGC-CCTACGG        TTTTTCTTTACTCTG  64 33
        mutL NONE
CTRC55_03020  641897 ..  641930 - -10.6  -5.14949   AAGAAAATAAGAAAA     GCCG-TTTTTTTGTT AAAAA AACAAAAAAATCGGC     TTTTATATGAAATTA  93 38
CTRC55_03015 NONE
CTRC55_03010 NONE
CTRC55_03005  636777 ..  636804 -  -4.2  -3.18264   TCTCGGACTGATCAA        GATATGTGCAAAG AAA CCTAGC-CATATC        CCCTCCTGCTATTCT  50 34
CTRC55_03000 NONE
CTRC55_02995 NONE
CTRC55_02990 NONE
CTRC55_02985 NONE
CTRC55_02980  633250 ..  633263 -  -3.9  -4.00042   TCTCGTACTAAACAA               TTATC AAAA GATAA                TTTAAATATAAACAT  57 51
CTRC55_02975  632690 ..  632716 - -13.1  -6.30182   TGATACAAAAAAAAA         GAACTCCCTCC AAAAA AGAGGGAGTTC         TTCACACCACGTAAG 100 65
CTRC55_02895  615347 ..  615366 -  -2.8  -2.68088   TTTGAAATGCATAAT            GAAGCAAT AAAA AGCGCTTC             TCGTATATTGTATTC  41 523
CTRC55_02875  612757 ..  612781 - -12.9  -3.72695   AGGCTCTCTAGCAAA          CGAAGGCGGAG CTA CTCCACCTTCA          TTTCAAGAGAGATCT  95 88
        hisS NONE
        aspS NONE
CTRC55_02850  603211 ..  603221 -    -4  -3.03441   GACTATTCTGTAACA                 GATA CAT TATC                 GTCGTTTGCTTCAAT  47 2
CTRC55_02845  602698 ..  602716 - -14.6  -4.36914   CTCTTCTCTAGAAAA             GGCCGAGA AAT TCTCGGCC             TTAACATGATTCAAA 100 36
CTRC55_02835 NONE
CTRC55_02830 NONE
CTRC55_02825  599712 ..  599722 -  -5.4  -3.27279   AGAAAATCAAGAAAT                 TCCT TGG AGGA                 TTACAATCCTAAAAA  56 26
CTRC55_02820  599104 ..  599117 -  -3.9  -2.59431   TCCCCTTAGAAGTTA               CTTAA AGTT TTAAG                CGCAAAGCTCTTCTC  45 13
         lnt NONE
        lpxC NONE
        fabZ NONE
CTRC55_02800 NONE
         fmt  594143 ..  594155 -  -5.5   -3.8709   AAACCCTTCTAGAAA                GGCCT CTC AGACC                TAGAATAAAAAAATA  62 71
CTRC55_02790  593088 ..  593111 -   -14  -5.36441   TTTGTAGATAAAAAA          GGCTGTTTCT TTTT AGAAACAGCC           TTTTTCTTAAGAAAT 100 53
        rplC NONE
        rplD  591336 ..  591350 -  -2.8  -3.54771   TTGACAACATCATAA               GGATCT TTC ATATCC               TCGCTTCCCCTTTAA  49 37
        rplW NONE
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC  588814 ..  588833 -    -5   -2.5937   ACACACCCTTATAAC            CTGTCTGCA CTA CGCAG-CAG            CTGTTGAAGCAGCAC  49 15
        rplP NONE
CTRC55_02745 NONE
        rpsQ NONE
        rplN  587533 ..  587547 -  -4.2  -2.91695   CTTACCTTTAAATCA               CCTCGG GAG CCAAAG               AGCTAATCTTAACAA  49 3
        rplX NONE
        rplE NONE
        rpsH NONE
        rplF NONE
        rplR NONE
        rpsE NONE
        rplO  584285 ..  584307 -  -2.8  -2.95668   AATGTAGCCATAAAC           TTTACCTAAA AGT TCTAGTTAAA           CAGCCTCGATAAGAC  43 21
        secY NONE
        rpsM NONE
CTRC55_02685 NONE
CTRC55_02680 NONE
        rplQ  580466 ..  580483 -  -7.1  -4.56775   AGTGTTTTCGAAAAA             TTAGCAT CACT ATGCTAA              AAATTCTATGATACA  79 17
CTRC55_02670 NONE
CTRC55_02665  578436 ..  578463 -   -12   -4.7373   CCATCTGAGCAAAAA        CGACGAGGACCC TAAA GAGTCCTCGCCA         CAGCTTTACAAGAAG 100 112
CTRC55_02660  577682 ..  577696 -  -2.8  -4.71426   GGGTTACTAACAAAA               TCAGGA ATC TCCCAA               AAGGCTTTACTATCA  65 38
        ruvC NONE
        ruvA NONE
         ndk  575833 ..  575863 - -17.6  -6.22802   TCCTATAAAAAAAAA       CACCCCCCTCTGCA CGG TGCAGAGGGGGGCT       TGCACAATCTCAAAA 100 44
CTRC55_02625  571265 ..  571281 -  -6.5   -3.5553   AAAGAAACGGAAAGA              GAGGGAT TCG AACCCTC              GGTACCCTTTAAGGG  65 215
CTRC55_02620  570492 ..  570505 -  -3.1  -3.74519   AAGATTTTTATGAAA               TCCAG GGAA CTAGA                ATACCGCACTTGCTG  53 89
CTRC55_02615  568689 ..  568725 - -10.3  -5.63517   TTTTTAAATAAAAAA    TTAAAAGACCTGGAATA CTA TACTCCAGGTCTTTTTC    TTCTCAAGACTATAA 100 35
CTRC55_02610 NONE
CTRC55_02605 NONE
        coaE NONE
         rho  562669 ..  562679 -  -2.6  -3.21827   ATAAAAATTATCTAA                 TTTT GAC AAAA                 AACGGACCCATACCC  46 336
CTRC55_02585  561120 ..  561135 -  -3.2  -2.96237   CAAGGGCAAAAATAC              GCATGA AACC TCTTGC               TTGATAGAAGAATCA  45 102
CTRC55_02580 NONE
CTRC55_02575 NONE
CTRC55_02570  558980 ..  558996 -  -5.2  -3.54129   CACAGTCTCTTTAAA              TTCCTT GTTCT AAGGAA              GCCGGGATTGCATTT  56 18
        hemH  558031 ..  558046 -  -2.6  -2.52543   ATCCCGTCTAAGGCA              TTAGAA GCGG CTCTAA               AGAAGTTTCCTGTGG  41 2
CTRC55_02560  556472 ..  556492 -  -5.6  -2.82878   AAAAAAAATACCAAG            GTAAAATA TCTCT TATTTTAC            TCCCATCTACAGAGG  52 401
CTRC55_02545 NONE
CTRC55_02540 NONE
CTRC55_02535 NONE
CTRC55_02530  554121 ..  554142 - -11.7  -6.36459   TTTAAGAAAAAAAAA           GAGAGTTGA AAAT TCAACTCTC            TTTTAGAAAAAACTA 100 38
CTRC55_02525 NONE
CTRC55_02520 NONE
CTRC55_02515  548580 ..  548591 -  -4.4  -4.07568   CCCGGGCGGGGAAAA                GCTT TACA AAGC                 CCTTACCGAATTTGA  59 50
CTRC55_02495  543236 ..  543250 -  -5.7  -3.15249   GATATCCTTGATGAA               CCAGA TTTCT TCTGG               GAACATCCAGAAACT  55 512
CTRC55_02475  541417 ..  541444 -  -4.9   -4.2461   ATGCTCATGAAGAAA        CGATCTCCTTC AGCCAA GAAGAAGACCA         TATTTTAAGAGTGAT  66 185
CTRC55_02440  535661 ..  535673 -  -4.1  -3.43492   CTAGATTTATCAGAA                CAAGA GCA TCTCG                TTACTGTCATATGCA  52 225
        prfB NONE
CTRC55_02410 NONE
CTRC55_02405  530294 ..  530319 - -13.4  -3.25207   GCAAAGGAGAACAGA         CGAGCAGAAC AGATAA GTTCTGCTCG          TGAATGCCTAAGCCA 100 33
CTRC55_02395  525682 ..  525717 - -13.6  -3.37493   CCTGTAACATATGAA    TATTTAAGGGAAG-CTC TTC GAGTCTTCCCTTAAACA    TACACAGATACTGCG 100 19
CTRC55_02370  521459 ..  521470 -  -4.4  -3.55604   TTACGGAAGTAAAGA                CGAA CTTG TTCG                 CGCATTCAAAGAATT  55 209
CTRC55_02360  520171 ..  520200 -  -6.5  -4.03885   TTCTAAAAAAATCAA       CAGCAAACTGTTT CTCA AAACTGCTTACTG        AATAGGCGCTTCAGA  71 20
CTRC55_02355 NONE
CTRC55_02350 NONE
CTRC55_02345  513599 ..  513618 -  -5.7  -3.21772   AAGTTTTTTACAATA            GGAGAGA TTTTGT CCTCTCC             TCTACTCTGAGATGA  54 108
CTRC55_02340  512675 ..  512704 - -19.3  -6.09888   TTTCAACAAAAAAAA       GAGCCCCCTCCGG AATT CCGGAGGAGGCCC        AAGCTCTCCCCTGCT 100 67
        gltX  510810 ..  510839 -  -6.4  -4.11751   ATGAACCCCCGAAAA       GGGAGTACATCT TAGCCC AGAAGTGCTCCC        CTCTTTTCAAACACG  69 141
CTRC55_02325  510063 ..  510096 - -18.5  -3.59979   TCTTGTTAGCCGAAA     TAGTTAGTAAGGAAG CCAA CTTCCTTACTAACTA      CATCTGTTGTGGGTA 100 60
CTRC55_02320  508274 ..  508297 -   -16   -5.9218   TAGATAACAAAAAAA          GCCGCCCAGG AATC CCTGGACGGC           ACCTACACATCGATA 100 51
CTRC55_02315  507591 ..  507617 - -12.3  -2.62958   CAGCTCAATAAAATC         TGGGAGGAGGA CTCTT TCCTCCTCCCT         TTCCATACATCATCT  85 101
        rpsL NONE
CTRC55_02295 NONE
CTRC55_02290 NONE
        rpsJ NONE
CTRC55_02280  500225 ..  500238 -  -4.5  -3.36327   GTAGTCTATCTACAA               GAAGC TGTC GCCTC                TTTAAAACCTACACA  53 254
CTRC55_02265  498957 ..  498969 -  -4.1  -5.24416   TAACTACAAGAAAAA                GAAAC GAT GCTTC                CAAGACCATTACCAA  76 103
CTRC55_02260 NONE
CTRC55_02255 NONE
        dapF  495846 ..  495857 -    -3  -2.64616   TTTTGAGGTACAGGA                TATG TCGT CATA                 GGCTCCAGTATAGGG  41 85
CTRC55_02245  494406 ..  494417 -  -2.2  -4.47485   AAAAATGCTAGAAAA                CGTC CAAA AACG                 CCACCCCTCAGCTCC  60 475
        rplU NONE
        rpmA  485351 ..  485382 -  -6.7  -6.08342   GAACAAACAAAAAAA      GCCCTATTTTTAC GCGTAG GCAAAAACAGAGC       TTGAACAAACTGAAT 100 57
        obgE  483923 ..  483944 -  -9.5  -3.01712   TTCTTTTTGGCAATA           TCTTATGGG TCAC CCCACAAGA            TCTTTATTTCCTTGG  73 398
CTRC55_02115 NONE
CTRC55_02110 NONE
CTRC55_02105  458685 ..  458702 -  -7.1  -4.99972   ATAAAACATTAAAAA             TCAAGTT TCAA AACTTGA              ATCATAAAAGATTTC  83 27
        lpxK NONE
CTRC55_02095  456161 ..  456182 - -10.9  -4.91429   AAACCTTAAAGAAAA           CGAAGAGAG AAAA CCCTCTTCG            TTAAAAGATCTCTAA  93 37
CTRC55_02090 NONE
CTRC55_02085  453544 ..  453563 - -12.2  -2.50016   CTTTAGGAGTAAGAG            CTGCTAGG GAAA CCTAGCAG             ACTTGTAAACCCCAT  85 226
CTRC55_02050  442741 ..  442758 -  -4.1  -3.08754   CTTAAAAGAAAATAT             TCCTCTG ATCA CAGATGA              CTCTTCCCTTGTTAT  49 311
CTRC55_02030  438778 ..  438792 -  -2.1  -5.28942   TACTGGAAAGAAAAA              GT-GGC CCAC GCCTAC               GAGATCAACCTCAAA  75 210
CTRC55_02020 NONE
CTRC55_02015  435342 ..  435389 -  -4.4  -4.89852   CGATACTCACAAAAA CGC-ATTCGTTGT-TGGATGGA ATTAGA TCCATCCACACAACACATAACG AGCAGATATACTATG  73 36
CTRC55_02010  433740 ..  433755 -  -3.2  -4.67168   AAAAATCTTGAAAAA              CCAGCG CGGC CACTAG               CTATTGATCCCTATT  64 36
CTRC55_02000  432611 ..  432639 - -14.7  -5.63103   TTTCAATGAAAAAAA        CGCCCTCTTCTCT TGA AGAGAAGAGAACG        TTTAATGATGCTATT 100 36
CTRC55_01995 NONE
CTRC55_01990  430809 ..  430820 -    -3  -3.28791   ATGTTTCTTCCATAA                TAAG GCCT CTTA                 ATCGTTTTCTAAAAT  46 40
CTRC55_01985 NONE
CTRC55_01980 NONE
         pgi  426922 ..  426934 -  -2.7  -3.61889   TAAAAACTCTGCAAA                CAAAA AAA CTTTG                CCTGGCCGTCTCCGT  49 51
CTRC55_01970  426659 ..  426684 - -13.5  -5.75342   TTTTGGCAAAAAAAA         GCTCATCTATT TTTC AATAGATGAGC          CGACTTTAACTGATA 100 46
CTRC55_01965  425147 ..  425159 -  -3.4  -3.48276   TGGTTGCTGATACAA                CAAG AAATA CTTG                TATATTGGGAGCAAC  49 401
CTRC55_01910  412448 ..  412465 -  -4.9  -4.26292   AACAGGAAAAGCAAA             GCAAATT CGCA AACTTGC              TCTTTTTCCTAATTT  66 82
CTRC55_01905 NONE
CTRC55_01900 NONE
CTRC55_01895 NONE
CTRC55_01890  408291 ..  408326 - -12.1  -5.08178   ATATAGACACAAAAA    CCCTTTATTACCTCT GTAAAA AGACGTAATAAAGGG     CACAGTTCATCTCAT 100 111
CTRC55_01885 NONE
CTRC55_01880 NONE
CTRC55_01875  406536 ..  406548 -  -9.1  -3.40403   GTCTCCTCACTAGAA                CGCCA GTC TGGCG                TCATCTTTATAGAAG  71 259
CTRC55_01860  405615 ..  405631 -  -8.1  -2.52676   GAGTGGTCGAATGCA              TCTGATT CGA AATCAGA              AGTCCCTCAACGGGG  64 85
CTRC55_01855  403187 ..  403203 -  -3.8  -4.10672   TCAAGCCAAAGGAAA              CAAAAA TGTAT TTTTTG              GGAATTTTTTCACTT  59 81
CTRC55_01850 NONE
        ksgA  400959 ..  400973 -  -2.8  -3.74519   AAGAGTGCTATGAAA               TCCAAG ACA CCTAGA               GCAGACATTGTGATG  51 96
         def  400124 ..  400153 -  -5.1  -3.58522   ACTAGCACCCCTAAA       CACGCCATTCCTAT GCC ATAGCA-TGGCGTA       AGTATAAGCGAAGCG  57 96
        secG  399696 ..  399722 - -10.3  -6.17268   GGATAACAAAAAAAA         CCAAACTAGTT TGTCC AACCAGTTTGG         TTTTTTTTCTTATCG 100 63
CTRC55_01800  391374 ..  391397 -  -5.3  -4.40358   AGCTATCTGATAAAA          GGAGATCTT TCGTAC AAGCTCTCC           TTCTTGTGAAAGCTT  69 82
CTRC55_01785  387332 ..  387346 -  -2.7  -3.67597   GTTTTTATTTAATAA               CGCGC GCCTA GCTCG               AACGCACAAGAGACC  49 171
        rpsU NONE
CTRC55_01775 NONE
CTRC55_01770  383786 ..  383811 -  -9.8  -5.75342   CTGTTCTAAAAAAAA         GCGCTCCT-GT TTATC ACTAGGAGCGC         TTTTTGTTGGAAATG 100 54
CTRC55_01760 NONE
CTRC55_01755 NONE
CTRC55_01750 NONE
CTRC55_01745  379180 ..  379192 -  -4.1  -3.90588   GATGTTCGAATTAAA                CCAGA TTG TCTAG                ATCCTGAAGATCCTG  57 145
CTRC55_01695  364359 ..  364379 -    -9  -4.59773   GCCCATGTCTAAAAA            GCCCTCTG TAGAC CAGAAGGC            TTGCTTTGACTTTGT  86 499
CTRC55_01690  363877 ..  363910 - -19.1  -5.81412   TCGAGTCAAAAAAAA     GCTCTTTGCTAGACC TTTA GGTCTAACAAAGAGC      TTTATCATCGTTCGC 100 63
CTRC55_01685  363546 ..  363564 -  -3.2  -2.57988   CAGCAGAATCAAGAC             TCAAATCT ATC AAATCTGA             AGAGGGACTGCTATC  43 16
CTRC55_01680  361732 ..  361774 - -11.4  -4.56775   ATCTGGCTCGAAAAA CCTAATGAGATAGCCAATGA TTC TCATTGGCTATCTCCTCCTG CTCACAAGACTACTT 100 466
        infA  359755 ..  359766 -  -4.4  -2.77569   AAACAACCTTAACGA                TGTC TGTA GACA                 ACACGAGCCTTCGTC  48 7
CTRC55_01660  358179 ..  358200 - -12.3  -3.74345   AGCTACACACCCAAA           GGCAAGGCT TTTC AGCCTCGCC            AACACATCACTTAAT  90 41
        secE NONE
        nusG  357245 ..  357272 -  -3.6  -3.21696   TTATAAGAACATAGA        GAATAAG-AATAC ACA GAATTTCTTATTC        TTACTCACTTTCTTG  48 26
        rplK NONE
        rplA NONE
        rplJ NONE
        rplL  354894 ..  354923 -  -5.1  -3.89587   CCATTAAGAAAAAAC       CATTGC-AACAGAA ATA TTCCGTTTGCGATG       CCAAACACTAAAAGT  61 159
        rpoB NONE
CTRC55_01620  346672 ..  346693 -  -9.5  -3.12378   AACGATACTATTCAA           GGGGGTTATG ACT CAT-ACCCCC           TCTCTTTCTCTAGTT  74 55
CTRC55_01615 NONE
CTRC55_01610  345109 ..  345149 -  -6.3  -4.08216   TTAGCTCTTCTAAAA  GCAGCCTCCTCCTTT AGACTCTCAGA AAAAGAAGAAGCTGC  TCGTGGTGATGCCAT  69 88
CTRC55_01600  343678 ..  343693 -  -6.1  -6.02914   CGCATACAAAAAAAA              CTCCG AGTTTG CGGAG               CTTCCATCGTCAACG 100 91
CTRC55_01595 NONE
CTRC55_01590 NONE
CTRC55_01585 NONE
CTRC55_01580 NONE
CTRC55_01575  337137 ..  337149 -  -2.7  -2.92111   TTTTCAAAAAACGCA                CAAAA ACC TTCTG                TATTTAAAGATTTTG  43 29
CTRC55_01570 NONE
CTRC55_01565 NONE
        valS  333256 ..  333297 -  -4.5  -2.61452   ATCAGCCTAATCAAT TCGTATCGTTGCAAAAGAA CAGC CTCTTTTAAAGCGATGCGA  GTTTATCTAAAATGC  47 12
        pknD  330430 ..  330453 -  -8.9  -4.75776   AATCTAAGCCAAAAA          GCCCTTTCC TTTATG AGAAAGGGC           TTTTTATTTCTTTAA  88 37
CTRC55_01530  326369 ..  326380 -  -2.2   -3.7791   GAATTAGTTAGGAAA                TCCC GCTG AGGA                 GAACCTAAGAATGAT  50 2
CTRC55_01525 NONE
CTRC55_01520  323664 ..  323674 -  -2.6  -3.21912   TTTTTAACCGATCAA                 TAAT AAA ATTA                 TTGCTTGCTCATTTC  46 23
CTRC55_01515  322635 ..  322670 -  -6.9  -2.74496   ATTTACAGAAAAATT    TCATAGAAGGCCCTC TTTTTG AAGAGCCGCCTATGA     TCTTTTATTTGTTAT  60 30
         dut NONE
CTRC55_01505 NONE
CTRC55_01500  321052 ..  321064 -  -4.1  -2.64705   GATAACTTAATGAAT                TTGAG CTT CCCAA                TTTTTAACAAAAGCT  45 4
CTRC55_01495  319759 ..  319793 - -13.1  -5.06735   CATAAATGACAAAAA     GAAAAAGGAGAGC TGTTGCTGT GCTCTCCTTTTTC     TCTAAATATTCCTGA 100 54
        mnmA  316687 ..  316697 -  -2.4  -4.12554   GAAAGAGAAGAAGAA                 GCTG TTT CTGC                 TTTAGCTATAGAAGG  55 58
CTRC55_01470 NONE
CTRC55_01465  311732 ..  311755 - -15.4  -3.26719   TGGACAAAGACCTAA          GGGAGGATCT GTAC AGATCCTCCC           TCCCTATTAGAAGAG 100 41
CTRC55_01460 NONE
CTRC55_01455  309110 ..  309126 -  -7.9    -2.924   CAAGGCTTCATAAAT              GGCGGTT AAT AGCCGCC              TTTGCTAGGGTTCTA  64 30
CTRC55_01430  304493 ..  304513 -  -8.3  -3.32727   GCAATATTACAGTAA            CTGGAAGAG TAT CTCTTCAAG            GAAGAGCTATGGTTA  69 122
CTRC55_01405 NONE
CTRC55_01400 NONE
CTRC55_01395  297802 ..  297817 -  -5.4  -4.06185   CAGAGAAAGAGCAAA              GACAAG AGAA CTCGTC               TTTTTACTCTTTCAC  65 212
        murE NONE
CTRC55_01385  295507 ..  295522 -  -3.2  -3.68351   TTTCGAGCACTTAAA              GGTCTT GTTA AAGCCC               TCCCTCCCCCAGATT  51 39
CTRC55_01380  294946 ..  294977 -  -6.7  -2.67803   TCTTGAGGAAATTTA      GAGTCAAGCTT GCTTACGCTG AAGCCTGACTC       TACGATCGAAAGCAA  56 62
CTRC55_01375  293693 ..  293719 -  -2.4  -2.97408   TTTCACGCAAACAAT         TTTAATTTCTCT TAA AAAGAAATCAAG         CCTTTTCAAATAAAA  42 21
CTRC55_01370 NONE
CTRC55_01365  290301 ..  290323 -  -8.4  -2.70354   CTGTGGATAAATGCA           GGATTTGCCG GAG CAGCCAATCC           AAACATACCTCTTCT  63 404
CTRC55_01340  287915 ..  287932 -  -2.1   -4.3778   AAAAAAGAAAGCAAA             CTTTTAT CTGT ATAAAAA              GGTTGTTAATCTGTT  59 31
CTRC55_01335 NONE
CTRC55_01330  285818 ..  285839 -  -8.8  -4.15453   CAACTCATGTTAAAA           CTTCTGGA TACTCC TCCAGAAG            TAGGCGCCTCTATCA  83 124
CTRC55_01315  282631 ..  282651 -  -6.7   -3.4252   CTTTATTTACGAGAA            GGTACGGCA TAT CGCCGCTCC            TGTGACCCTGCATAT  63 288
CTRC55_01300  279981 ..  279992 -    -3  -5.63103   CCCTAATCAAAAAAA                CTTT GCAG AAAG                 ACAAAACCTCTCCAA  80 249
CTRC55_01295  277485 ..  277501 -  -6.7   -3.6608   ACTATCTCAGCTAAA              TAGTTTT GAT AAAACTA              TTCTAATTAAAAAAC  65 67
CTRC55_01290  276066 ..  276090 -  -9.3  -3.31322   CCGAACGGTGTACAA         GGAGGC-GGC GCAATT GCCTGCCTCC          TACCTCTAGTCTTCT  75 31
CTRC55_01280  273067 ..  273085 - -11.8  -3.90588   TACTTCTCAATTAAA             GAAGGGAA TGT TTCCCTTC             TTTCTTCTAAGAAGT  90 32
CTRC55_01260  268094 ..  268104 -    -4  -3.86897   TGCAGGTTCTACAAA                 GATT GGC AATC                 ATGTAATTATCGGTG  57 273
CTRC55_01235 NONE
CTRC55_01230 NONE
        fabG  260262 ..  260283 -  -6.7  -5.90981   CTATAGCAAAAAAAA           TCTAGCTTT AAAT AAAACTAGA            GTAACCAATCCCTAC 100 256
        acpP  259857 ..  259887 - -12.6  -5.85737   AGATCAATAAAAAAA       CCCACAGTTACCTT TGG ATGGGAACTGTGGG       CCTAAACTCTTTGTT 100 50
CTRC55_01200  255364 ..  255377 -  -5.3  -3.29096   TCTATGAAGGAGCAA               TGCTT CCTC AAGCA                TATTGGTGGAATCCT  55 318
CTRC55_01185  251646 ..  251660 -  -6.4  -4.04209   GCAAATCACTATAAA               TCCGCA ACA TGCAGA               ACTAAAGCGCCGTAA  71 89
CTRC55_01180  250953 ..  250971 -  -4.6  -3.13625   AAAGCAACATATAGA             CGTCTTTT GTG AAAAGACT             GAATAGAGGAATCTA  50 38
CTRC55_01175  250153 ..  250187 -  -2.9  -4.11625   AAAAGAAATATTAAA    CATGGC-GCCTCTATT TCGC AAAAAAGGCCGACATG     CTACAGGAAAGCTAA  55 140
CTRC55_01170 NONE
CTRC55_01165  249127 ..  249148 -  -7.4  -3.99481   GTTATCAAAAGAGAA           GCTTTTCT CTAAAT AGAAAAGC            GTATCGTCAACTCTT  72 68
CTRC55_01160  248638 ..  248651 -  -2.3  -2.82909   CAAACAGATAAATAC               CCCTA ATCA TTGGG                AAAAATTGAGTGTAG  41 14
CTRC55_01155  247408 ..  247427 - -12.2  -6.08563   AAGAGAGAAAAAAAA            GCCTCTTC ATAA GAAGAGGC             TTTTGCTCGGCAAAC 100 40
CTRC55_01150 NONE
CTRC55_01145  246703 ..  246715 -  -3.5  -3.23274   TTGTTCACAACGCAA                TTTTT TTC AAAAA                ATCCAATAAAGCCCT  48 57
CTRC55_01140  245545 ..  245581 -  -2.9  -4.82901   GTCCCCTTATAAAAA    GATGGGAGAACCCCC GCTAATG GGAGGTTCTCTTTTC    GTTGATTACTTCATG  65 5
CTRC55_01105 NONE
CTRC55_01100 NONE
CTRC55_01095 NONE
CTRC55_01090  235467 ..  235483 -  -3.7  -4.87291   CACCCGAAGGAAAAA              TCTTCCA AGC TGGAACA              CTTTCAGGAAATCCT  70 416
        leuS NONE
CTRC55_01075  230426 ..  230441 -  -5.4  -4.70613   AAAATTCTAAGAAAA              CAACAG GAAA CTGTCG               GTGAAAGCTAGAAGA  74 250
CTRC55_01010  215687 ..  215698 -  -4.4  -5.09245   CGAAAACGACAAAAA                GTCT TCCG AGAC                 TCTTAAACAAGAGTC  75 265
CTRC55_01005  214052 ..  214078 - -10.2  -5.14477   GACATAGTGAAAAAA         GCCCGAAGAAAA CCT TTGTCTTCGGAC         TCACCCACTATTTGA  93 33
CTRC55_01000  212787 ..  212803 -  -5.9  -3.60006   AAGTAGACGGCGAAA              GAGTTTA TAC TAAACCC              GATAAAAACACAAAA  62 63
CTRC55_00995  211923 ..  211939 -  -4.4  -2.90901   ATATGCGCAAGCACA              CCTTCC TTCGC AGAAGG              CTCAGGAAGAAGGCT  49 128
CTRC55_00990 NONE
        gyrB NONE
CTRC55_00980 NONE
         tmk NONE
CTRC55_00970  205093 ..  205107 -  -2.9  -3.59979   CCGGCCGATTGTAAA               TTAGA GATGT TCTAA               CTTCTTCTTCGATTA  49 22
CTRC55_00940  198777 ..  198799 -    -5  -2.87003   ATTATCAAAAATGGA           TTTTTTCTGT GCG AAAGAAAAAA           ATCTATAAAGATACA  50 28
CTRC55_00935  197717 ..  197732 -  -4.7  -3.55563   ATTTCACCCTGTAAA              GAGAG CTTTTC CTCTC               TTGAAAGCTTATGTA  57 95
CTRC55_00930 NONE
CTRC55_00920 NONE
CTRC55_00915  194649 ..  194683 -    -3   -3.0395   ATAGACGTCCCAAGA     TAGCAACGAGAT GTATTATTTTG ATTTCGTTGCTA     ACACAAGCAGACAAG  43 6
CTRC55_00905 NONE
CTRC55_00900 NONE
CTRC55_00895  191742 ..  191775 - -13.3  -3.39717   ATTTATGAATATGAA     TATGAAGCCCAGGCA TCGA TATCTGGGCTTCATA      GTTGTCTGTATAGAT 100 168
CTRC55_00855  185855 ..  185868 -  -5.9  -3.53012   CGTTGTTCTTGGAAA               GCGAC CTTA GCCGC                GTTTCGCGTTTTAAC  60 97
CTRC55_00850 NONE
CTRC55_00845  184534 ..  184556 -  -9.2  -4.04206   CTATTGTGAGAGAAA           GAGGCAGA GGGATGG TCTGCCTC           CGAGAGAACTTAGAA  82 67
CTRC55_00840  184054 ..  184066 -  -9.1  -3.04322   CGTAAGGGTCTAATA                CAGCC TAA GGCTG                TTGAGGCGCTGGAGG  69 17
CTRC55_00830  182762 ..  182772 -  -2.6  -3.89033   CCTAAATAAGAAAGA                 TTAT AAG ATAA                 TTGTCTTTTTTTTCT  53 90
CTRC55_00825 NONE
CTRC55_00820  180014 ..  180028 -  -5.6  -3.28712   GCTTTCCTCTGAGAA               GGCAGG AAA CTTGCC               TTCTCTTTCGACTAC  56 54
CTRC55_00805  175686 ..  175718 - -14.9  -4.17023   GGAACTAGCTGAAAA      GTGCCACCGAGAAGA GAT TCTCCGCGATGGCAC      CTTAATGCAGCGACA 100 195
CTRC55_00785  171967 ..  171988 - -14.5   -4.7033   TAATGGAAGAGAAAA           GAGAGGCTG AACC CAGCCTCTC            TACGAAAACAAACTA 100 41
CTRC55_00780  170224 ..  170243 -  -5.7  -6.01369   GAAAGAATAAAAAAA            GGAGGGCT GCTAA AGCCC-CC            TTTTTAGTTAGGATA 100 63
CTRC55_00730  155754 ..  155768 -  -2.1  -4.82667   GGAGGATATTAAAAA               GCATA TCGCT CATGC               CCAAGAGTTAGGGAT  66 257
CTRC55_00700  150550 ..  150562 -  -3.5  -3.93817   CAGATCTTAAAAAGA                TTTTA AAC TAAAA                AGAAGATTTTTTAAT  55 56
CTRC55_00695 NONE
CTRC55_00690  145827 ..  145839 -  -6.3  -2.87003   CGATGAATAAGATTA                TTCTG TTT CAGAA                ACTTCCCACGGAAGA  54 10
         adk  143470 ..  143493 -    -9  -3.61175   GAGACATCACAAAGA          GGACTAAAAA GAGG TTCTTAGTCC           TTGTTGAACGCGACT  74 67
CTRC55_00670  142580 ..  142599 - -10.8  -4.36914   GTGCGTTTCAGAAAA            GCCTTCTT TCAA AAGAAGGC             TTTTCTATTTTTAGG  90 14
CTRC55_00655  141034 ..  141048 -  -2.8  -4.91712   GCTAAGGGAGAAAAA               CTGCCT TGG AAGCAA               AAGAATATAGAGTTT  70 468
CTRC55_00630  137947 ..  137957 -  -3.2  -3.54935   TAAAGTTCTCTGAAA                 CCAG ATC CTAG                 GGCTTTATATGATAA  51 30
CTRC55_00625  136957 ..  136974 - -11.3  -4.72272   TTCGCGTAGGAAAAA             GAGGAGG GAGA CCTCCTC              TTTTTTTTTATTTTG  91 146
CTRC55_00590 NONE
CTRC55_00585  128584 ..  128600 -  -3.7  -3.60214   ATTTGAACGATAGAA              CGTTC AGAGGAA GAACG              ATAGCAAAGTCCTCG  53 94
       groES NONE
       groEL  126459 ..  126484 - -11.2  -5.86332   GGAATCTAAAAAAAA         GCCTCGTTCC TTTTGG GAAACGAGGC          TCGAAGAATCTATTT 100 57
CTRC55_00570  125235 ..  125246 -  -5.8  -3.09516   TTCTTTAGGAGTTAA                GGGA GTCT TCCC                 AGAAATGGAGGTTCA  55 378
CTRC55_00555  122659 ..  122696 - -13.5  -2.68942   AGGGCTTTATATAAT   GAGACCGAGCTTCC-CAT TCT AAGCGGAGGCTCGGTCTC   TTTTTTGTATCGGAT  91 129
CTRC55_00545  119058 ..  119106 -  -3.5  -3.35197   GGTGAGAGAGAGGAA GTGAAGAAAATTATGGATAGATT TATTC AATCT--CCAGAAGTTTCTTCAC AGGTAACCATGAATT  49 341
CTRC55_00530  117331 ..  117354 -  -6.6  -2.91239   TAGAGACTCTAGACA          GCCTCAGGTA GTTG TTCCAGAGGC           CCTATTATGTTCTCT  58 114
        rpsA  114005 ..  114024 -   -10  -2.55818   AATAATGCTAACGGA            GCAGAGCC CTAG AGCTCTGC             TCTTATGTTTGCTCT  73 69
        nusA NONE
        infB NONE
        rbfA NONE
        truB NONE
CTRC55_00490  107616 ..  107646 -    -4  -4.08767   CCTATCTGTGTAAAA       TTAGAGGAAGAAAT TCT ATCGCTCCCTCTAG       AGGAACGACAAGATT  61 375
CTRC55_00480 NONE
CTRC55_00475 NONE
CTRC55_00470 NONE
CTRC55_00465 NONE
CTRC55_00460 NONE
        rpmB   99614 ..   99646 -  -7.7  -3.05993   TCAGGGATAGATACA      CGCATGCTGAGGGAA AAT CTTTCTCAGCATGCA      CATAGGAGACTAAAA  65 35
CTRC55_00450   97807 ..   97817 -  -3.2  -3.62096   GGTTATTATGGGAAA                 TAGC TAT GCCA                 GCGAGAAGAAACAAG  51 5
CTRC55_00445   96493 ..   96522 -  -5.8  -2.62933   GAATCTTGGAGATGA       CGTTGTCACTAT TCCAAC ATAAAGACAACG        AATAATCTTGCAATC  54 44
CTRC55_00425 NONE
CTRC55_00420 NONE
CTRC55_00415   90758 ..   90768 -  -5.4  -4.21322   GGAACAGAAATTAAA                 TCTC TGC GAGA                 TCATGGTGGAAATTT  65 346
CTRC55_00405 NONE
        recF   88140 ..   88159 -  -5.1  -4.78266   AAATAAAACAACAAA            GTTTGTT TCAATT AACAAAC             AGTTTTTGCGAAGGA  72 45
CTRC55_00395   86657 ..   86669 -  -2.6  -3.90464   CTCGAAAGAATAGAA                GCCG AAAAA CAGC                GGATTTCTTTAGGCA  53 400
CTRC55_00360   78420 ..   78446 -  -6.7  -4.57569   GTATTTCTTTAAAAA         GTCGTGAAA AAATTTTGA TTTCACGAC         TCCCTATTTCGGCTG  77 264
CTRC55_00350   76694 ..   76717 - -11.7  -5.26907   GAACACAAAAGAAAA          GCCCCGTCC GAGATA GAACGGGGC           TTCTTTTTAGAGAAT 100 56
CTRC55_00345   74702 ..   74722 -  -9.7  -4.27842   AGCATAAAACAAGAA            GGCCCAGTA AAC TACTGGGTC            TTTTTTATGAAGCAA  86 57
CTRC55_00320   68708 ..   68718 -    -4  -3.89346   TCCGGAGGCTAGAAA                 GTTA TCT TAAC                 GCAGCCACCTTTAAT  57 8
CTRC55_00315   67486 ..   67523 - -13.7  -3.26947   TAAGCTTTAGATCAA   TTTAAAGGAAGGTCTCC ATGG AGAAACCTCCCTTTAAA    AATTGTTTATAAATT 100 32
CTRC55_00310 NONE
CTRC55_00305   64732 ..   64748 -  -6.5  -3.74792   GATTATAGACGGAAA              GGAAGCC GTA GGATTCC              TTGTGAATGTTAAAG  65 107
CTRC55_00290 NONE
CTRC55_00285 NONE
CTRC55_00280   58760 ..   58794 -  -5.8  -3.25823   GTGTTCCCATATTAA     TGTTCCCAGTCATG CTTCCTC CATGAATGGGAAGA     TAATCTGGATTTGGG  58 322
CTRC55_00230   47966 ..   47994 - -15.5  -3.34398   GGGGGGGCTTAAACA        CAAAAGGAAGAGA GAC CCTCTTCCTTTTG        TTGTATGATAGCAAA 100 45
CTRC55_00225   45864 ..   45887 -   -11  -4.72272   GCTTGGTAGCAAAAA          GACCCATCTC TAAT GAGCTGGGTC           TTTTTTTATCTAGAT  91 31
         dcd   43171 ..   43184 -  -3.1  -3.25202   TAGGGTTAAACAAAC               GGAAT AGTA ATCCC                TTGTTGTTTTTGATA  48 2
CTRC55_00200   42424 ..   42434 -  -6.8  -2.85351   GCCTCGGACAGTATA                 CTCC CTT GGAG                 CTTTTTTAGCATTTG  57 386
CTRC55_00195   40902 ..   40914 -  -2.7  -3.78934   GGCGCGCTATAATAA                TCTTC TTG GAAAA                CCTGCAGCTATTCTC  52 203
CTRC55_00185   38876 ..   38888 -  -2.7  -4.67011   AAGTCCATGGAAAAA                TGAAA CTT TCTCA                GAATGTTTTTAGAGG  62 128
CTRC55_00180   36394 ..   36419 -  -8.3   -4.0641   CTTCACGGAGAGAAA         GAGGGGTTTCA TTTA TAGAACCCCTC          TTTTTTTTGTGCAAA  79 109
CTRC55_00120 NONE
CTRC55_00115   24570 ..   24590 -    -4  -5.53991   CATTGAGCAAAAAAA            GAGGTCTT ATTAA AAGATCTC            TTTTTTTTGCTCTTA  83 38
CTRC55_00100   19870 ..   19893 - -12.6  -2.76046   GCAAGTTCAATAGGA          GTCTTGTTAC TTAG GTAACAAGAC           TCTTCTTCTTTTTTC  90 48
CTRC55_00085   15749 ..   15760 -  -4.4  -4.42386   CTGTTATGCAGAAAA                GAGA GCGG TCTC                 TATTGGTAAATACGG  66 391
CTRC55_00070 NONE
CTRC55_00065 NONE
CTRC55_00060    9699 ..    9710 -    -3  -4.25056   CATGGGAGGAAGAAA                TTCT CCTG AGAA                 AGCGATCCGTAGTTG  61 109
CTRC55_00050    8073 ..    8090 -  -4.1  -4.46212   TTGGCCAGGACAAAA             CCTCAAA ATGT TTGGAGG              CTATTCCGTAGGGAA  66 153
CTRC55_00035    6295 ..    6307 -  -3.4  -4.35042   TCTAGTATAAAATAA                CCAA AGAGA TTGG                AGGGAGATAATTTTT  60 87
CTRC55_00030    5086 ..    5117 - -14.6  -4.03183   AGGCATAAAAGAGAA      GAACCCTCTTCATA AAAC TATGGAGAGGGTTC       TCTTTTTAAAAGGCT 100 58
CTRC55_00010    1209 ..    1247 -  -9.6  -5.14563   GTTTGTATCAAAAAA   CTAAGCCCACCAAGAAGA AAT TCTCTTTGGTGGGCTTCT   TTTTTTATTCAAAAA   0 99
