SOTONF3_00004	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
SOTONF3_00029	PWY-6829	tRNA methylation (yeast)
SOTONF3_00029	PWY-7285	methylwyosine biosynthesis
SOTONF3_00029	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
SOTONF3_00032	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
SOTONF3_00042	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONF3_00048	PWY-5988	wound-induced proteolysis I
SOTONF3_00048	PWY-6018	seed germination protein turnover
SOTONF3_00057	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
SOTONF3_00058	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
SOTONF3_00060	PWY-7560	methylerythritol phosphate pathway II
SOTONF3_00075	PWY-7560	methylerythritol phosphate pathway II
SOTONF3_00082	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
SOTONF3_00082	PWY-2201	folate transformations I
SOTONF3_00082	PWY-3841	folate transformations II
SOTONF3_00082	PWY-5030	L-histidine degradation III
SOTONF3_00082	PWY-5497	purine nucleobases degradation II (anaerobic)
SOTONF3_00082	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
SOTONF3_00089	PWY-5941	glycogen degradation II (eukaryotic)
SOTONF3_00089	PWY-6724	starch degradation II
SOTONF3_00089	PWY-6737	starch degradation V
SOTONF3_00089	PWY-7238	sucrose biosynthesis II
SOTONF3_00095	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
SOTONF3_00095	PWY-6167	flavin biosynthesis II (archaea)
SOTONF3_00095	PWY-6168	flavin biosynthesis III (fungi)
SOTONF3_00102	PWY-6012	acyl carrier protein metabolism I
SOTONF3_00102	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
SOTONF3_00110	PWY-5663	tetrahydrobiopterin biosynthesis I
SOTONF3_00110	PWY-5664	tetrahydrobiopterin biosynthesis II
SOTONF3_00110	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
SOTONF3_00110	PWY-6703	preQ<sub>0</sub> biosynthesis
SOTONF3_00110	PWY-6983	tetrahydrobiopterin biosynthesis III
SOTONF3_00110	PWY-7442	drosopterin and aurodrosopterin biosynthesis
SOTONF3_00123	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
SOTONF3_00123	PWY-5723	Rubisco shunt
SOTONF3_00130	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SOTONF3_00140	PWY-7533	gliotoxin biosynthesis
SOTONF3_00187	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
SOTONF3_00187	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
SOTONF3_00188	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
SOTONF3_00188	PWY-7177	UTP and CTP dephosphorylation II
SOTONF3_00188	PWY-7185	UTP and CTP dephosphorylation I
SOTONF3_00190	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
SOTONF3_00191	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
SOTONF3_00191	PWY-6855	chitin degradation I (archaea)
SOTONF3_00191	PWY-6906	chitin derivatives degradation
SOTONF3_00193	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
SOTONF3_00193	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
SOTONF3_00193	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONF3_00193	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
SOTONF3_00193	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
SOTONF3_00193	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
SOTONF3_00198	PWY-6700	queuosine biosynthesis
SOTONF3_00210	PWY-1042	glycolysis IV (plant cytosol)
SOTONF3_00210	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
SOTONF3_00210	PWY-5484	glycolysis II (from fructose 6-phosphate)
SOTONF3_00210	PWY-7385	1,3-propanediol biosynthesis (engineered)
SOTONF3_00212	PWY-1042	glycolysis IV (plant cytosol)
SOTONF3_00212	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
SOTONF3_00212	PWY-5484	glycolysis II (from fructose 6-phosphate)
SOTONF3_00212	PWY-7385	1,3-propanediol biosynthesis (engineered)
SOTONF3_00217	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
SOTONF3_00220	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
SOTONF3_00220	PWY-5723	Rubisco shunt
SOTONF3_00225	PWY-5381	pyridine nucleotide cycling (plants)
SOTONF3_00225	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
SOTONF3_00225	PWY-6596	adenosine nucleotides degradation I
SOTONF3_00225	PWY-6606	guanosine nucleotides degradation II
SOTONF3_00225	PWY-6607	guanosine nucleotides degradation I
SOTONF3_00225	PWY-6608	guanosine nucleotides degradation III
SOTONF3_00225	PWY-7185	UTP and CTP dephosphorylation I
SOTONF3_00246	PWY-5367	petroselinate biosynthesis
SOTONF3_00246	PWY-5971	palmitate biosynthesis II (bacteria and plants)
SOTONF3_00246	PWY-5973	<i>cis</i>-vaccenate biosynthesis
SOTONF3_00246	PWY-5989	stearate biosynthesis II (bacteria and plants)
SOTONF3_00246	PWY-5994	palmitate biosynthesis I (animals and fungi)
SOTONF3_00246	PWY-6113	superpathway of mycolate biosynthesis
SOTONF3_00246	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
SOTONF3_00246	PWY-6519	8-amino-7-oxononanoate biosynthesis I
SOTONF3_00246	PWY-6951	SOTONF3_00246|SOTONF3_00246|YP_007730178.1|GeneID:15119003
SOTONF3_00246	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
SOTONF3_00246	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
SOTONF3_00246	PWYG-321	mycolate biosynthesis
SOTONF3_00247	PWY-4381	fatty acid biosynthesis initiation I
SOTONF3_00247	PWY-6799	fatty acid biosynthesis (plant mitochondria)
SOTONF3_00247	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
SOTONF3_00248	PWY-4381	fatty acid biosynthesis initiation I
SOTONF3_00257	PWY-5941	glycogen degradation II (eukaryotic)
SOTONF3_00257	PWY-622	starch biosynthesis
SOTONF3_00257	PWY-6731	starch degradation III
SOTONF3_00257	PWY-6737	starch degradation V
SOTONF3_00257	PWY-7238	sucrose biosynthesis II
SOTONF3_00267	PWY-6823	molybdenum cofactor biosynthesis
SOTONF3_00267	PWY-6891	thiazole biosynthesis II (Bacillus)
SOTONF3_00267	PWY-6892	thiazole biosynthesis I (E. coli)
SOTONF3_00267	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
SOTONF3_00274	PWY-4381	fatty acid biosynthesis initiation I
SOTONF3_00274	PWY-5743	3-hydroxypropanoate cycle
SOTONF3_00274	PWY-5744	glyoxylate assimilation
SOTONF3_00274	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
SOTONF3_00274	PWY-6679	jadomycin biosynthesis
SOTONF3_00274	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
SOTONF3_00294	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
SOTONF3_00294	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
SOTONF3_00301	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
SOTONF3_00301	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
SOTONF3_00301	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONF3_00301	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
SOTONF3_00302	PWY-4381	fatty acid biosynthesis initiation I
SOTONF3_00302	PWY-5743	3-hydroxypropanoate cycle
SOTONF3_00302	PWY-5744	glyoxylate assimilation
SOTONF3_00302	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
SOTONF3_00302	PWY-6679	jadomycin biosynthesis
SOTONF3_00302	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
SOTONF3_00303	PWY-6854	ethylene biosynthesis III (microbes)
SOTONF3_00304	PWY-6749	CMP-legionaminate biosynthesis I
SOTONF3_00308	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
SOTONF3_00308	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
SOTONF3_00316	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SOTONF3_00317	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SOTONF3_00322	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
SOTONF3_00322	PWY-5723	Rubisco shunt
SOTONF3_00343	PWY-1042	glycolysis IV (plant cytosol)
SOTONF3_00343	PWY-5484	glycolysis II (from fructose 6-phosphate)
SOTONF3_00343	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
SOTONF3_00343	PWY-7003	glycerol degradation to butanol
SOTONF3_00347	PWY-6891	thiazole biosynthesis II (Bacillus)
SOTONF3_00347	PWY-6892	thiazole biosynthesis I (E. coli)
SOTONF3_00347	PWY-7560	methylerythritol phosphate pathway II
SOTONF3_00348	PWY-1042	glycolysis IV (plant cytosol)
SOTONF3_00348	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
SOTONF3_00348	PWY-5484	glycolysis II (from fructose 6-phosphate)
SOTONF3_00348	PWY-5723	Rubisco shunt
SOTONF3_00348	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
SOTONF3_00348	PWY-6886	1-butanol autotrophic biosynthesis
SOTONF3_00348	PWY-6901	superpathway of glucose and xylose degradation
SOTONF3_00348	PWY-7003	glycerol degradation to butanol
SOTONF3_00348	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
SOTONF3_00348	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
SOTONF3_00380	PWY-2941	L-lysine biosynthesis II
SOTONF3_00380	PWY-2942	L-lysine biosynthesis III
SOTONF3_00380	PWY-5097	L-lysine biosynthesis VI
SOTONF3_00381	PWY-2941	L-lysine biosynthesis II
SOTONF3_00381	PWY-2942	L-lysine biosynthesis III
SOTONF3_00381	PWY-5097	L-lysine biosynthesis VI
SOTONF3_00381	PWY-6559	spermidine biosynthesis II
SOTONF3_00381	PWY-6562	norspermidine biosynthesis
SOTONF3_00381	PWY-7153	grixazone biosynthesis
SOTONF3_00382	PWY-2941	L-lysine biosynthesis II
SOTONF3_00382	PWY-2942	L-lysine biosynthesis III
SOTONF3_00382	PWY-5097	L-lysine biosynthesis VI
SOTONF3_00382	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
SOTONF3_00382	PWY-6559	spermidine biosynthesis II
SOTONF3_00382	PWY-6562	norspermidine biosynthesis
SOTONF3_00382	PWY-7153	grixazone biosynthesis
SOTONF3_00382	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
SOTONF3_00383	PWY-2941	L-lysine biosynthesis II
SOTONF3_00383	PWY-2942	L-lysine biosynthesis III
SOTONF3_00383	PWY-5097	L-lysine biosynthesis VI
SOTONF3_00385	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
SOTONF3_00386	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
SOTONF3_00387	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
SOTONF3_00388	PWY-6164	3-dehydroquinate biosynthesis I
SOTONF3_00389	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
SOTONF3_00389	PWY-6416	quinate degradation II
SOTONF3_00389	PWY-6707	gallate biosynthesis
SOTONF3_00392	PWY-40	putrescine biosynthesis I
SOTONF3_00392	PWY-43	putrescine biosynthesis II
SOTONF3_00392	PWY-6305	putrescine biosynthesis IV
SOTONF3_00392	PWY-6834	spermidine biosynthesis III
SOTONF3_00395	PWY-1622	formaldehyde assimilation I (serine pathway)
SOTONF3_00395	PWY-5392	reductive TCA cycle II
SOTONF3_00395	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
SOTONF3_00395	PWY-5690	TCA cycle II (plants and fungi)
SOTONF3_00395	PWY-5913	TCA cycle VI (obligate autotrophs)
SOTONF3_00395	PWY-6728	methylaspartate cycle
SOTONF3_00395	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SOTONF3_00395	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
SOTONF3_00395	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
SOTONF3_00397	PWY-3801	sucrose degradation II (sucrose synthase)
SOTONF3_00397	PWY-5054	sorbitol biosynthesis I
SOTONF3_00397	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
SOTONF3_00397	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
SOTONF3_00397	PWY-5659	GDP-mannose biosynthesis
SOTONF3_00397	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
SOTONF3_00397	PWY-621	sucrose degradation III (sucrose invertase)
SOTONF3_00397	PWY-622	starch biosynthesis
SOTONF3_00397	PWY-6531	mannitol cycle
SOTONF3_00397	PWY-6981	chitin biosynthesis
SOTONF3_00397	PWY-7238	sucrose biosynthesis II
SOTONF3_00397	PWY-7347	sucrose biosynthesis III
SOTONF3_00397	PWY-7385	1,3-propanediol biosynthesis (engineered)
SOTONF3_00401	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
SOTONF3_00401	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
SOTONF3_00401	PWY-6164	3-dehydroquinate biosynthesis I
SOTONF3_00410	PWY-5097	L-lysine biosynthesis VI
SOTONF3_00425	PWY-6167	flavin biosynthesis II (archaea)
SOTONF3_00425	PWY-6168	flavin biosynthesis III (fungi)
SOTONF3_00425	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SOTONF3_00450	PWY-5198	factor 420 biosynthesis
SOTONF3_00452	PWY-5839	menaquinol-7 biosynthesis
SOTONF3_00452	PWY-5844	menaquinol-9 biosynthesis
SOTONF3_00452	PWY-5849	menaquinol-6 biosynthesis
SOTONF3_00452	PWY-5890	menaquinol-10 biosynthesis
SOTONF3_00452	PWY-5891	menaquinol-11 biosynthesis
SOTONF3_00452	PWY-5892	menaquinol-12 biosynthesis
SOTONF3_00452	PWY-5895	menaquinol-13 biosynthesis
SOTONF3_00454	PWY-2941	L-lysine biosynthesis II
SOTONF3_00454	PWY-5097	L-lysine biosynthesis VI
SOTONF3_00456	PWY-1622	formaldehyde assimilation I (serine pathway)
SOTONF3_00456	PWY-181	photorespiration
SOTONF3_00456	PWY-2161	folate polyglutamylation
SOTONF3_00456	PWY-2201	folate transformations I
SOTONF3_00456	PWY-3661	glycine betaine degradation I
SOTONF3_00456	PWY-3661-1	glycine betaine degradation II (mammalian)
SOTONF3_00456	PWY-3841	folate transformations II
SOTONF3_00456	PWY-5497	purine nucleobases degradation II (anaerobic)
SOTONF3_00457	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
SOTONF3_00457	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
SOTONF3_00458	PWY-7560	methylerythritol phosphate pathway II
SOTONF3_00470	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
SOTONF3_00477	PWY-7205	CMP phosphorylation
SOTONF3_00480	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
SOTONF3_00480	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
SOTONF3_00487	PWY-7560	methylerythritol phosphate pathway II
SOTONF3_00518	PWY-622	starch biosynthesis
SOTONF3_00520	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SOTONF3_00525	PWY-5269	cardiolipin biosynthesis II
SOTONF3_00525	PWY-5668	cardiolipin biosynthesis I
SOTONF3_00529	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
SOTONF3_00529	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
SOTONF3_00530	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
SOTONF3_00530	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
SOTONF3_00530	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
SOTONF3_00530	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONF3_00530	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
SOTONF3_00530	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
SOTONF3_00530	PWY-7205	CMP phosphorylation
SOTONF3_00530	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
SOTONF3_00530	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONF3_00530	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
SOTONF3_00530	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONF3_00530	PWY-7224	purine deoxyribonucleosides salvage
SOTONF3_00530	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
SOTONF3_00530	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
SOTONF3_00536	PWY-1042	glycolysis IV (plant cytosol)
SOTONF3_00536	PWY-5484	glycolysis II (from fructose 6-phosphate)
SOTONF3_00536	PWY-6901	superpathway of glucose and xylose degradation
SOTONF3_00536	PWY-7003	glycerol degradation to butanol
SOTONF3_00563	PWY-5971	palmitate biosynthesis II (bacteria and plants)
SOTONF3_00563	PWY-5973	<i>cis</i>-vaccenate biosynthesis
SOTONF3_00563	PWY-5989	stearate biosynthesis II (bacteria and plants)
SOTONF3_00563	PWY-5994	palmitate biosynthesis I (animals and fungi)
SOTONF3_00563	PWY-6113	superpathway of mycolate biosynthesis
SOTONF3_00563	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
SOTONF3_00563	PWY-6519	8-amino-7-oxononanoate biosynthesis I
SOTONF3_00563	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
SOTONF3_00563	PWYG-321	mycolate biosynthesis
SOTONF3_00589	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
SOTONF3_00589	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
SOTONF3_00590	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
SOTONF3_00590	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
SOTONF3_00590	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
SOTONF3_00619	PWY-1042	glycolysis IV (plant cytosol)
SOTONF3_00619	PWY-1622	formaldehyde assimilation I (serine pathway)
SOTONF3_00619	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
SOTONF3_00619	PWY-5484	glycolysis II (from fructose 6-phosphate)
SOTONF3_00619	PWY-5723	Rubisco shunt
SOTONF3_00619	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
SOTONF3_00619	PWY-6886	1-butanol autotrophic biosynthesis
SOTONF3_00619	PWY-6901	superpathway of glucose and xylose degradation
SOTONF3_00619	PWY-7003	glycerol degradation to butanol
SOTONF3_00619	PWY-7124	ethylene biosynthesis V (engineered)
SOTONF3_00619	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
SOTONF3_00623	PWY-3781	aerobic respiration I (cytochrome c)
SOTONF3_00623	PWY-4302	aerobic respiration III (alternative oxidase pathway)
SOTONF3_00623	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
SOTONF3_00623	PWY-5690	TCA cycle II (plants and fungi)
SOTONF3_00623	PWY-6728	methylaspartate cycle
SOTONF3_00623	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SOTONF3_00623	PWY-7254	TCA cycle VII (acetate-producers)
SOTONF3_00623	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
SOTONF3_00640	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
SOTONF3_00646	PWY-5199	factor 420 polyglutamylation
SOTONF3_00647	PWY-3841	folate transformations II
SOTONF3_00647	PWY-6614	tetrahydrofolate biosynthesis
SOTONF3_00648	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
SOTONF3_00648	PWY-6148	tetrahydromethanopterin biosynthesis
SOTONF3_00648	PWY-6614	tetrahydrofolate biosynthesis
SOTONF3_00648	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
SOTONF3_00648	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
SOTONF3_00649	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
SOTONF3_00649	PWY-6148	tetrahydromethanopterin biosynthesis
SOTONF3_00649	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
SOTONF3_00649	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
SOTONF3_00664	PWY-3221	dTDP-L-rhamnose biosynthesis II
SOTONF3_00664	PWY-6808	dTDP-D-forosamine biosynthesis
SOTONF3_00664	PWY-6942	dTDP-D-desosamine biosynthesis
SOTONF3_00664	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
SOTONF3_00664	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
SOTONF3_00664	PWY-6974	dTDP-L-olivose biosynthesis
SOTONF3_00664	PWY-6976	dTDP-L-mycarose biosynthesis
SOTONF3_00664	PWY-7104	dTDP-L-megosamine biosynthesis
SOTONF3_00664	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
SOTONF3_00664	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
SOTONF3_00664	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
SOTONF3_00664	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
SOTONF3_00664	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
SOTONF3_00664	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
SOTONF3_00664	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
SOTONF3_00664	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
SOTONF3_00668	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
SOTONF3_00669	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
SOTONF3_00669	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
SOTONF3_00674	PWY-5913	TCA cycle VI (obligate autotrophs)
SOTONF3_00674	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
SOTONF3_00674	PWY-6638	sulfolactate degradation III
SOTONF3_00674	PWY-6642	(<i>R</i>)-cysteate degradation
SOTONF3_00674	PWY-6643	coenzyme M biosynthesis II
SOTONF3_00674	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
SOTONF3_00674	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
SOTONF3_00674	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
SOTONF3_00693	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
SOTONF3_00693	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
SOTONF3_00701	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
SOTONF3_00708	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SOTONF3_00731	PWY-6823	molybdenum cofactor biosynthesis
SOTONF3_00731	PWY-6891	thiazole biosynthesis II (Bacillus)
SOTONF3_00731	PWY-6892	thiazole biosynthesis I (E. coli)
SOTONF3_00731	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
SOTONF3_00737	PWY-1042	glycolysis IV (plant cytosol)
SOTONF3_00737	PWY-5484	glycolysis II (from fructose 6-phosphate)
SOTONF3_00737	PWY-6886	1-butanol autotrophic biosynthesis
SOTONF3_00737	PWY-6901	superpathway of glucose and xylose degradation
SOTONF3_00737	PWY-7003	glycerol degradation to butanol
SOTONF3_00743	PWY-5669	phosphatidylethanolamine biosynthesis I
SOTONF3_00755	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
SOTONF3_00759	PWY-5667	CDP-diacylglycerol biosynthesis I
SOTONF3_00759	PWY-5981	CDP-diacylglycerol biosynthesis III
SOTONF3_00762	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SOTONF3_00767	PWY-1622	formaldehyde assimilation I (serine pathway)
SOTONF3_00767	PWY-5484	glycolysis II (from fructose 6-phosphate)
SOTONF3_00770	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
SOTONF3_00770	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
SOTONF3_00774	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
SOTONF3_00776	PWY-6167	flavin biosynthesis II (archaea)
SOTONF3_00776	PWY-6168	flavin biosynthesis III (fungi)
SOTONF3_00776	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
SOTONF3_00777	PWY-6167	flavin biosynthesis II (archaea)
SOTONF3_00777	PWY-6168	flavin biosynthesis III (fungi)
SOTONF3_00796	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
SOTONF3_00796	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
SOTONF3_00802	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
SOTONF3_00802	PWY-5723	Rubisco shunt
SOTONF3_00802	PWY-6891	thiazole biosynthesis II (Bacillus)
SOTONF3_00802	PWY-6892	thiazole biosynthesis I (E. coli)
SOTONF3_00802	PWY-6901	superpathway of glucose and xylose degradation
SOTONF3_00802	PWY-7560	methylerythritol phosphate pathway II
SOTONF3_00809	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
SOTONF3_00809	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
SOTONF3_00810	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
SOTONF3_00810	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
SOTONF3_00810	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
SOTONF3_00811	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
SOTONF3_00811	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
SOTONF3_00814	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
SOTONF3_00814	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
SOTONF3_00814	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
SOTONF3_00814	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
SOTONF3_00815	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
SOTONF3_00815	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
SOTONF3_00819	PWY-2781	<i>cis</i>-zeatin biosynthesis
SOTONF3_00820	PWY-5198	factor 420 biosynthesis
SOTONF3_00849	PWY-5269	cardiolipin biosynthesis II
SOTONF3_00849	PWY-5668	cardiolipin biosynthesis I
SOTONF3_00850	PWY-622	starch biosynthesis
SOTONF3_00857	PWY-7560	methylerythritol phosphate pathway II
SOTONF3_00861	PWY-5667	CDP-diacylglycerol biosynthesis I
SOTONF3_00861	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
SOTONF3_00871	PWY-6749	CMP-legionaminate biosynthesis I
SOTONF3_00872	PWY-6749	CMP-legionaminate biosynthesis I
SOTONF3_00878	PWY-5392	reductive TCA cycle II
SOTONF3_00878	PWY-5537	pyruvate fermentation to acetate V
SOTONF3_00878	PWY-5538	pyruvate fermentation to acetate VI
SOTONF3_00878	PWY-5690	TCA cycle II (plants and fungi)
SOTONF3_00878	PWY-5913	TCA cycle VI (obligate autotrophs)
SOTONF3_00878	PWY-6728	methylaspartate cycle
SOTONF3_00878	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SOTONF3_00878	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
SOTONF3_00879	PWY-5392	reductive TCA cycle II
SOTONF3_00879	PWY-5537	pyruvate fermentation to acetate V
SOTONF3_00879	PWY-5538	pyruvate fermentation to acetate VI
SOTONF3_00879	PWY-5690	TCA cycle II (plants and fungi)
SOTONF3_00879	PWY-5913	TCA cycle VI (obligate autotrophs)
SOTONF3_00879	PWY-6728	methylaspartate cycle
SOTONF3_00879	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SOTONF3_00879	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
SOTONF3_00884	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
SOTONF3_00884	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
SOTONF3_00884	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
SOTONF3_00884	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
SOTONF3_00884	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONF3_00884	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONF3_00884	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
SOTONF3_00884	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
SOTONF3_00885	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
SOTONF3_00885	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
SOTONF3_00885	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
SOTONF3_00885	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
SOTONF3_00885	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONF3_00885	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONF3_00885	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
SOTONF3_00885	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
SOTONF3_00888	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
SOTONF3_00888	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
SOTONF3_00914	PWY-5392	reductive TCA cycle II
SOTONF3_00914	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
SOTONF3_00914	PWY-5690	TCA cycle II (plants and fungi)
SOTONF3_00914	PWY-5913	TCA cycle VI (obligate autotrophs)
SOTONF3_00914	PWY-6728	methylaspartate cycle
SOTONF3_00914	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SOTONF3_00914	PWY-7254	TCA cycle VII (acetate-producers)
SOTONF3_00914	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
SOTONF3_00918	PWY-7560	methylerythritol phosphate pathway II
SOTONF3_00927	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
SOTONF3_00927	PWY-622	starch biosynthesis
