SOTONIA3_00004	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
SOTONIA3_00029	PWY-6829	tRNA methylation (yeast)
SOTONIA3_00029	PWY-7285	methylwyosine biosynthesis
SOTONIA3_00029	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
SOTONIA3_00032	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
SOTONIA3_00041	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONIA3_00047	PWY-5988	wound-induced proteolysis I
SOTONIA3_00047	PWY-6018	seed germination protein turnover
SOTONIA3_00056	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
SOTONIA3_00057	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
SOTONIA3_00059	PWY-7560	methylerythritol phosphate pathway II
SOTONIA3_00074	PWY-7560	methylerythritol phosphate pathway II
SOTONIA3_00081	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
SOTONIA3_00081	PWY-2201	folate transformations I
SOTONIA3_00081	PWY-3841	folate transformations II
SOTONIA3_00081	PWY-5030	L-histidine degradation III
SOTONIA3_00081	PWY-5497	purine nucleobases degradation II (anaerobic)
SOTONIA3_00081	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
SOTONIA3_00089	PWY-5941	glycogen degradation II (eukaryotic)
SOTONIA3_00089	PWY-6724	starch degradation II
SOTONIA3_00089	PWY-6737	starch degradation V
SOTONIA3_00089	PWY-7238	sucrose biosynthesis II
SOTONIA3_00095	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
SOTONIA3_00095	PWY-6167	flavin biosynthesis II (archaea)
SOTONIA3_00095	PWY-6168	flavin biosynthesis III (fungi)
SOTONIA3_00102	PWY-6012	acyl carrier protein metabolism I
SOTONIA3_00102	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
SOTONIA3_00110	PWY-5663	tetrahydrobiopterin biosynthesis I
SOTONIA3_00110	PWY-5664	tetrahydrobiopterin biosynthesis II
SOTONIA3_00110	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
SOTONIA3_00110	PWY-6703	preQ<sub>0</sub> biosynthesis
SOTONIA3_00110	PWY-6983	tetrahydrobiopterin biosynthesis III
SOTONIA3_00110	PWY-7442	drosopterin and aurodrosopterin biosynthesis
SOTONIA3_00123	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
SOTONIA3_00123	PWY-5723	Rubisco shunt
SOTONIA3_00130	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SOTONIA3_00140	PWY-7533	gliotoxin biosynthesis
SOTONIA3_00189	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
SOTONIA3_00189	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
SOTONIA3_00190	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
SOTONIA3_00190	PWY-7177	UTP and CTP dephosphorylation II
SOTONIA3_00190	PWY-7185	UTP and CTP dephosphorylation I
SOTONIA3_00192	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
SOTONIA3_00193	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
SOTONIA3_00193	PWY-6855	chitin degradation I (archaea)
SOTONIA3_00193	PWY-6906	chitin derivatives degradation
SOTONIA3_00195	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
SOTONIA3_00195	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
SOTONIA3_00195	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONIA3_00195	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
SOTONIA3_00195	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
SOTONIA3_00195	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
SOTONIA3_00200	PWY-6700	queuosine biosynthesis
SOTONIA3_00212	PWY-1042	glycolysis IV (plant cytosol)
SOTONIA3_00212	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
SOTONIA3_00212	PWY-5484	glycolysis II (from fructose 6-phosphate)
SOTONIA3_00212	PWY-7385	1,3-propanediol biosynthesis (engineered)
SOTONIA3_00214	PWY-1042	glycolysis IV (plant cytosol)
SOTONIA3_00214	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
SOTONIA3_00214	PWY-5484	glycolysis II (from fructose 6-phosphate)
SOTONIA3_00214	PWY-7385	1,3-propanediol biosynthesis (engineered)
SOTONIA3_00219	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
SOTONIA3_00222	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
SOTONIA3_00222	PWY-5723	Rubisco shunt
SOTONIA3_00227	PWY-5381	pyridine nucleotide cycling (plants)
SOTONIA3_00227	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
SOTONIA3_00227	PWY-6596	adenosine nucleotides degradation I
SOTONIA3_00227	PWY-6606	guanosine nucleotides degradation II
SOTONIA3_00227	PWY-6607	guanosine nucleotides degradation I
SOTONIA3_00227	PWY-6608	guanosine nucleotides degradation III
SOTONIA3_00227	PWY-7185	UTP and CTP dephosphorylation I
SOTONIA3_00248	PWY-5367	petroselinate biosynthesis
SOTONIA3_00248	PWY-5971	palmitate biosynthesis II (bacteria and plants)
SOTONIA3_00248	PWY-5973	<i>cis</i>-vaccenate biosynthesis
SOTONIA3_00248	PWY-5989	stearate biosynthesis II (bacteria and plants)
SOTONIA3_00248	PWY-5994	palmitate biosynthesis I (animals and fungi)
SOTONIA3_00248	PWY-6113	superpathway of mycolate biosynthesis
SOTONIA3_00248	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
SOTONIA3_00248	PWY-6519	8-amino-7-oxononanoate biosynthesis I
SOTONIA3_00248	PWY-6951	SOTONIA3_00248|SOTONIA3_00248|YP_007724675.1|GeneID:15113211
SOTONIA3_00248	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
SOTONIA3_00248	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
SOTONIA3_00248	PWYG-321	mycolate biosynthesis
SOTONIA3_00249	PWY-4381	fatty acid biosynthesis initiation I
SOTONIA3_00249	PWY-6799	fatty acid biosynthesis (plant mitochondria)
SOTONIA3_00249	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
SOTONIA3_00250	PWY-4381	fatty acid biosynthesis initiation I
SOTONIA3_00259	PWY-5941	glycogen degradation II (eukaryotic)
SOTONIA3_00259	PWY-622	starch biosynthesis
SOTONIA3_00259	PWY-6731	starch degradation III
SOTONIA3_00259	PWY-6737	starch degradation V
SOTONIA3_00259	PWY-7238	sucrose biosynthesis II
SOTONIA3_00269	PWY-6823	molybdenum cofactor biosynthesis
SOTONIA3_00269	PWY-6891	thiazole biosynthesis II (Bacillus)
SOTONIA3_00269	PWY-6892	thiazole biosynthesis I (E. coli)
SOTONIA3_00269	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
SOTONIA3_00276	PWY-4381	fatty acid biosynthesis initiation I
SOTONIA3_00276	PWY-5743	3-hydroxypropanoate cycle
SOTONIA3_00276	PWY-5744	glyoxylate assimilation
SOTONIA3_00276	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
SOTONIA3_00276	PWY-6679	jadomycin biosynthesis
SOTONIA3_00276	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
SOTONIA3_00296	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
SOTONIA3_00296	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
SOTONIA3_00303	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
SOTONIA3_00303	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
SOTONIA3_00303	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONIA3_00303	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
SOTONIA3_00304	PWY-4381	fatty acid biosynthesis initiation I
SOTONIA3_00304	PWY-5743	3-hydroxypropanoate cycle
SOTONIA3_00304	PWY-5744	glyoxylate assimilation
SOTONIA3_00304	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
SOTONIA3_00304	PWY-6679	jadomycin biosynthesis
SOTONIA3_00304	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
SOTONIA3_00305	PWY-6854	ethylene biosynthesis III (microbes)
SOTONIA3_00306	PWY-6749	CMP-legionaminate biosynthesis I
SOTONIA3_00310	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
SOTONIA3_00310	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
SOTONIA3_00318	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SOTONIA3_00319	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SOTONIA3_00324	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
SOTONIA3_00324	PWY-5723	Rubisco shunt
SOTONIA3_00344	PWY-1042	glycolysis IV (plant cytosol)
SOTONIA3_00344	PWY-5484	glycolysis II (from fructose 6-phosphate)
SOTONIA3_00344	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
SOTONIA3_00344	PWY-7003	glycerol degradation to butanol
SOTONIA3_00348	PWY-6891	thiazole biosynthesis II (Bacillus)
SOTONIA3_00348	PWY-6892	thiazole biosynthesis I (E. coli)
SOTONIA3_00348	PWY-7560	methylerythritol phosphate pathway II
SOTONIA3_00349	PWY-1042	glycolysis IV (plant cytosol)
SOTONIA3_00349	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
SOTONIA3_00349	PWY-5484	glycolysis II (from fructose 6-phosphate)
SOTONIA3_00349	PWY-5723	Rubisco shunt
SOTONIA3_00349	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
SOTONIA3_00349	PWY-6886	1-butanol autotrophic biosynthesis
SOTONIA3_00349	PWY-6901	superpathway of glucose and xylose degradation
SOTONIA3_00349	PWY-7003	glycerol degradation to butanol
SOTONIA3_00349	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
SOTONIA3_00349	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
SOTONIA3_00381	PWY-2941	L-lysine biosynthesis II
SOTONIA3_00381	PWY-2942	L-lysine biosynthesis III
SOTONIA3_00381	PWY-5097	L-lysine biosynthesis VI
SOTONIA3_00382	PWY-2941	L-lysine biosynthesis II
SOTONIA3_00382	PWY-2942	L-lysine biosynthesis III
SOTONIA3_00382	PWY-5097	L-lysine biosynthesis VI
SOTONIA3_00382	PWY-6559	spermidine biosynthesis II
SOTONIA3_00382	PWY-6562	norspermidine biosynthesis
SOTONIA3_00382	PWY-7153	grixazone biosynthesis
SOTONIA3_00383	PWY-2941	L-lysine biosynthesis II
SOTONIA3_00383	PWY-2942	L-lysine biosynthesis III
SOTONIA3_00383	PWY-5097	L-lysine biosynthesis VI
SOTONIA3_00383	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
SOTONIA3_00383	PWY-6559	spermidine biosynthesis II
SOTONIA3_00383	PWY-6562	norspermidine biosynthesis
SOTONIA3_00383	PWY-7153	grixazone biosynthesis
SOTONIA3_00383	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
SOTONIA3_00384	PWY-2941	L-lysine biosynthesis II
SOTONIA3_00384	PWY-2942	L-lysine biosynthesis III
SOTONIA3_00384	PWY-5097	L-lysine biosynthesis VI
SOTONIA3_00386	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
SOTONIA3_00387	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
SOTONIA3_00388	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
SOTONIA3_00389	PWY-6164	3-dehydroquinate biosynthesis I
SOTONIA3_00390	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
SOTONIA3_00390	PWY-6416	quinate degradation II
SOTONIA3_00390	PWY-6707	gallate biosynthesis
SOTONIA3_00393	PWY-40	putrescine biosynthesis I
SOTONIA3_00393	PWY-43	putrescine biosynthesis II
SOTONIA3_00393	PWY-6305	putrescine biosynthesis IV
SOTONIA3_00393	PWY-6834	spermidine biosynthesis III
SOTONIA3_00396	PWY-1622	formaldehyde assimilation I (serine pathway)
SOTONIA3_00396	PWY-5392	reductive TCA cycle II
SOTONIA3_00396	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
SOTONIA3_00396	PWY-5690	TCA cycle II (plants and fungi)
SOTONIA3_00396	PWY-5913	TCA cycle VI (obligate autotrophs)
SOTONIA3_00396	PWY-6728	methylaspartate cycle
SOTONIA3_00396	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SOTONIA3_00396	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
SOTONIA3_00396	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
SOTONIA3_00398	PWY-3801	sucrose degradation II (sucrose synthase)
SOTONIA3_00398	PWY-5054	sorbitol biosynthesis I
SOTONIA3_00398	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
SOTONIA3_00398	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
SOTONIA3_00398	PWY-5659	GDP-mannose biosynthesis
SOTONIA3_00398	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
SOTONIA3_00398	PWY-621	sucrose degradation III (sucrose invertase)
SOTONIA3_00398	PWY-622	starch biosynthesis
SOTONIA3_00398	PWY-6531	mannitol cycle
SOTONIA3_00398	PWY-6981	chitin biosynthesis
SOTONIA3_00398	PWY-7238	sucrose biosynthesis II
SOTONIA3_00398	PWY-7347	sucrose biosynthesis III
SOTONIA3_00398	PWY-7385	1,3-propanediol biosynthesis (engineered)
SOTONIA3_00402	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
SOTONIA3_00402	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
SOTONIA3_00402	PWY-6164	3-dehydroquinate biosynthesis I
SOTONIA3_00411	PWY-5097	L-lysine biosynthesis VI
SOTONIA3_00426	PWY-6167	flavin biosynthesis II (archaea)
SOTONIA3_00426	PWY-6168	flavin biosynthesis III (fungi)
SOTONIA3_00426	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SOTONIA3_00452	PWY-5198	factor 420 biosynthesis
SOTONIA3_00454	PWY-5839	menaquinol-7 biosynthesis
SOTONIA3_00454	PWY-5844	menaquinol-9 biosynthesis
SOTONIA3_00454	PWY-5849	menaquinol-6 biosynthesis
SOTONIA3_00454	PWY-5890	menaquinol-10 biosynthesis
SOTONIA3_00454	PWY-5891	menaquinol-11 biosynthesis
SOTONIA3_00454	PWY-5892	menaquinol-12 biosynthesis
SOTONIA3_00454	PWY-5895	menaquinol-13 biosynthesis
SOTONIA3_00456	PWY-2941	L-lysine biosynthesis II
SOTONIA3_00456	PWY-5097	L-lysine biosynthesis VI
SOTONIA3_00458	PWY-1622	formaldehyde assimilation I (serine pathway)
SOTONIA3_00458	PWY-181	photorespiration
SOTONIA3_00458	PWY-2161	folate polyglutamylation
SOTONIA3_00458	PWY-2201	folate transformations I
SOTONIA3_00458	PWY-3661	glycine betaine degradation I
SOTONIA3_00458	PWY-3661-1	glycine betaine degradation II (mammalian)
SOTONIA3_00458	PWY-3841	folate transformations II
SOTONIA3_00458	PWY-5497	purine nucleobases degradation II (anaerobic)
SOTONIA3_00459	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
SOTONIA3_00459	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
SOTONIA3_00460	PWY-7560	methylerythritol phosphate pathway II
SOTONIA3_00472	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
SOTONIA3_00479	PWY-7205	CMP phosphorylation
SOTONIA3_00482	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
SOTONIA3_00482	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
SOTONIA3_00489	PWY-7560	methylerythritol phosphate pathway II
SOTONIA3_00521	PWY-622	starch biosynthesis
SOTONIA3_00523	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SOTONIA3_00528	PWY-5269	cardiolipin biosynthesis II
SOTONIA3_00528	PWY-5668	cardiolipin biosynthesis I
SOTONIA3_00532	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
SOTONIA3_00532	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
SOTONIA3_00533	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
SOTONIA3_00533	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
SOTONIA3_00533	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
SOTONIA3_00533	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONIA3_00533	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
SOTONIA3_00533	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
SOTONIA3_00533	PWY-7205	CMP phosphorylation
SOTONIA3_00533	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
SOTONIA3_00533	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONIA3_00533	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
SOTONIA3_00533	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONIA3_00533	PWY-7224	purine deoxyribonucleosides salvage
SOTONIA3_00533	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
SOTONIA3_00533	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
SOTONIA3_00539	PWY-1042	glycolysis IV (plant cytosol)
SOTONIA3_00539	PWY-5484	glycolysis II (from fructose 6-phosphate)
SOTONIA3_00539	PWY-6901	superpathway of glucose and xylose degradation
SOTONIA3_00539	PWY-7003	glycerol degradation to butanol
SOTONIA3_00566	PWY-5971	palmitate biosynthesis II (bacteria and plants)
SOTONIA3_00566	PWY-5973	<i>cis</i>-vaccenate biosynthesis
SOTONIA3_00566	PWY-5989	stearate biosynthesis II (bacteria and plants)
SOTONIA3_00566	PWY-5994	palmitate biosynthesis I (animals and fungi)
SOTONIA3_00566	PWY-6113	superpathway of mycolate biosynthesis
SOTONIA3_00566	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
SOTONIA3_00566	PWY-6519	8-amino-7-oxononanoate biosynthesis I
SOTONIA3_00566	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
SOTONIA3_00566	PWYG-321	mycolate biosynthesis
SOTONIA3_00593	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
SOTONIA3_00593	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
SOTONIA3_00594	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
SOTONIA3_00594	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
SOTONIA3_00594	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
SOTONIA3_00623	PWY-1042	glycolysis IV (plant cytosol)
SOTONIA3_00623	PWY-1622	formaldehyde assimilation I (serine pathway)
SOTONIA3_00623	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
SOTONIA3_00623	PWY-5484	glycolysis II (from fructose 6-phosphate)
SOTONIA3_00623	PWY-5723	Rubisco shunt
SOTONIA3_00623	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
SOTONIA3_00623	PWY-6886	1-butanol autotrophic biosynthesis
SOTONIA3_00623	PWY-6901	superpathway of glucose and xylose degradation
SOTONIA3_00623	PWY-7003	glycerol degradation to butanol
SOTONIA3_00623	PWY-7124	ethylene biosynthesis V (engineered)
SOTONIA3_00623	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
SOTONIA3_00627	PWY-3781	aerobic respiration I (cytochrome c)
SOTONIA3_00627	PWY-4302	aerobic respiration III (alternative oxidase pathway)
SOTONIA3_00627	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
SOTONIA3_00627	PWY-5690	TCA cycle II (plants and fungi)
SOTONIA3_00627	PWY-6728	methylaspartate cycle
SOTONIA3_00627	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SOTONIA3_00627	PWY-7254	TCA cycle VII (acetate-producers)
SOTONIA3_00627	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
SOTONIA3_00628	PWY-3781	aerobic respiration I (cytochrome c)
SOTONIA3_00628	PWY-4302	aerobic respiration III (alternative oxidase pathway)
SOTONIA3_00628	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
SOTONIA3_00628	PWY-5690	TCA cycle II (plants and fungi)
SOTONIA3_00628	PWY-6728	methylaspartate cycle
SOTONIA3_00628	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SOTONIA3_00628	PWY-7254	TCA cycle VII (acetate-producers)
SOTONIA3_00628	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
SOTONIA3_00644	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
SOTONIA3_00650	PWY-5199	factor 420 polyglutamylation
SOTONIA3_00651	PWY-3841	folate transformations II
SOTONIA3_00651	PWY-6614	tetrahydrofolate biosynthesis
SOTONIA3_00652	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
SOTONIA3_00652	PWY-6148	tetrahydromethanopterin biosynthesis
SOTONIA3_00652	PWY-6614	tetrahydrofolate biosynthesis
SOTONIA3_00652	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
SOTONIA3_00652	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
SOTONIA3_00653	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
SOTONIA3_00653	PWY-6148	tetrahydromethanopterin biosynthesis
SOTONIA3_00653	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
SOTONIA3_00653	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
SOTONIA3_00672	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
SOTONIA3_00673	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
SOTONIA3_00673	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
SOTONIA3_00678	PWY-5913	TCA cycle VI (obligate autotrophs)
SOTONIA3_00678	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
SOTONIA3_00678	PWY-6638	sulfolactate degradation III
SOTONIA3_00678	PWY-6642	(<i>R</i>)-cysteate degradation
SOTONIA3_00678	PWY-6643	coenzyme M biosynthesis II
SOTONIA3_00678	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
SOTONIA3_00678	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
SOTONIA3_00678	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
SOTONIA3_00697	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
SOTONIA3_00697	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
SOTONIA3_00705	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
SOTONIA3_00712	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SOTONIA3_00734	PWY-6823	molybdenum cofactor biosynthesis
SOTONIA3_00734	PWY-6891	thiazole biosynthesis II (Bacillus)
SOTONIA3_00734	PWY-6892	thiazole biosynthesis I (E. coli)
SOTONIA3_00734	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
SOTONIA3_00740	PWY-1042	glycolysis IV (plant cytosol)
SOTONIA3_00740	PWY-5484	glycolysis II (from fructose 6-phosphate)
SOTONIA3_00740	PWY-6886	1-butanol autotrophic biosynthesis
SOTONIA3_00740	PWY-6901	superpathway of glucose and xylose degradation
SOTONIA3_00740	PWY-7003	glycerol degradation to butanol
SOTONIA3_00746	PWY-5669	phosphatidylethanolamine biosynthesis I
SOTONIA3_00758	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
SOTONIA3_00762	PWY-5667	CDP-diacylglycerol biosynthesis I
SOTONIA3_00762	PWY-5981	CDP-diacylglycerol biosynthesis III
SOTONIA3_00765	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SOTONIA3_00770	PWY-1622	formaldehyde assimilation I (serine pathway)
SOTONIA3_00770	PWY-5484	glycolysis II (from fructose 6-phosphate)
SOTONIA3_00773	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
SOTONIA3_00773	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
SOTONIA3_00777	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
SOTONIA3_00779	PWY-6167	flavin biosynthesis II (archaea)
SOTONIA3_00779	PWY-6168	flavin biosynthesis III (fungi)
SOTONIA3_00779	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
SOTONIA3_00780	PWY-6167	flavin biosynthesis II (archaea)
SOTONIA3_00780	PWY-6168	flavin biosynthesis III (fungi)
SOTONIA3_00799	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
SOTONIA3_00799	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
SOTONIA3_00805	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
SOTONIA3_00805	PWY-5723	Rubisco shunt
SOTONIA3_00805	PWY-6891	thiazole biosynthesis II (Bacillus)
SOTONIA3_00805	PWY-6892	thiazole biosynthesis I (E. coli)
SOTONIA3_00805	PWY-6901	superpathway of glucose and xylose degradation
SOTONIA3_00805	PWY-7560	methylerythritol phosphate pathway II
SOTONIA3_00812	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
SOTONIA3_00812	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
SOTONIA3_00813	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
SOTONIA3_00813	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
SOTONIA3_00813	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
SOTONIA3_00814	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
SOTONIA3_00814	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
SOTONIA3_00817	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
SOTONIA3_00817	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
SOTONIA3_00817	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
SOTONIA3_00817	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
SOTONIA3_00818	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
SOTONIA3_00818	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
SOTONIA3_00822	PWY-2781	<i>cis</i>-zeatin biosynthesis
SOTONIA3_00823	PWY-5198	factor 420 biosynthesis
SOTONIA3_00852	PWY-5269	cardiolipin biosynthesis II
SOTONIA3_00852	PWY-5668	cardiolipin biosynthesis I
SOTONIA3_00853	PWY-622	starch biosynthesis
SOTONIA3_00860	PWY-7560	methylerythritol phosphate pathway II
SOTONIA3_00864	PWY-5667	CDP-diacylglycerol biosynthesis I
SOTONIA3_00864	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
SOTONIA3_00873	PWY-6749	CMP-legionaminate biosynthesis I
SOTONIA3_00874	PWY-6749	CMP-legionaminate biosynthesis I
SOTONIA3_00880	PWY-5392	reductive TCA cycle II
SOTONIA3_00880	PWY-5537	pyruvate fermentation to acetate V
SOTONIA3_00880	PWY-5538	pyruvate fermentation to acetate VI
SOTONIA3_00880	PWY-5690	TCA cycle II (plants and fungi)
SOTONIA3_00880	PWY-5913	TCA cycle VI (obligate autotrophs)
SOTONIA3_00880	PWY-6728	methylaspartate cycle
SOTONIA3_00880	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SOTONIA3_00880	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
SOTONIA3_00881	PWY-5392	reductive TCA cycle II
SOTONIA3_00881	PWY-5537	pyruvate fermentation to acetate V
SOTONIA3_00881	PWY-5538	pyruvate fermentation to acetate VI
SOTONIA3_00881	PWY-5690	TCA cycle II (plants and fungi)
SOTONIA3_00881	PWY-5913	TCA cycle VI (obligate autotrophs)
SOTONIA3_00881	PWY-6728	methylaspartate cycle
SOTONIA3_00881	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SOTONIA3_00881	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
SOTONIA3_00886	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
SOTONIA3_00886	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
SOTONIA3_00886	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
SOTONIA3_00886	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
SOTONIA3_00886	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONIA3_00886	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONIA3_00886	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
SOTONIA3_00886	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
SOTONIA3_00887	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
SOTONIA3_00887	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
SOTONIA3_00887	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
SOTONIA3_00887	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
SOTONIA3_00887	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONIA3_00887	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SOTONIA3_00887	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
SOTONIA3_00887	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
SOTONIA3_00890	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
SOTONIA3_00890	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
SOTONIA3_00916	PWY-5392	reductive TCA cycle II
SOTONIA3_00916	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
SOTONIA3_00916	PWY-5690	TCA cycle II (plants and fungi)
SOTONIA3_00916	PWY-5913	TCA cycle VI (obligate autotrophs)
SOTONIA3_00916	PWY-6728	methylaspartate cycle
SOTONIA3_00916	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SOTONIA3_00916	PWY-7254	TCA cycle VII (acetate-producers)
SOTONIA3_00916	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
SOTONIA3_00920	PWY-7560	methylerythritol phosphate pathway II
SOTONIA3_00929	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
SOTONIA3_00929	PWY-622	starch biosynthesis
