AO9_00005	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AO9_00005	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AO9_00025	PWY-5913	TCA cycle VI (obligate autotrophs)
AO9_00025	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AO9_00025	PWY-6638	sulfolactate degradation III
AO9_00025	PWY-6642	(<i>R</i>)-cysteate degradation
AO9_00025	PWY-6643	coenzyme M biosynthesis II
AO9_00025	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AO9_00025	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AO9_00025	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AO9_00105	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AO9_00105	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
AO9_00140	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AO9_00175	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AO9_00280	PWY-6823	molybdenum cofactor biosynthesis
AO9_00280	PWY-6891	thiazole biosynthesis II (Bacillus)
AO9_00280	PWY-6892	thiazole biosynthesis I (E. coli)
AO9_00280	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AO9_00325	PWY-1042	glycolysis IV (plant cytosol)
AO9_00325	PWY-5484	glycolysis II (from fructose 6-phosphate)
AO9_00325	PWY-6886	1-butanol autotrophic biosynthesis
AO9_00325	PWY-6901	superpathway of glucose and xylose degradation
AO9_00325	PWY-7003	glycerol degradation to butanol
AO9_00465	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AO9_00465	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AO9_00465	PWY-5989	stearate biosynthesis II (bacteria and plants)
AO9_00465	PWY-5994	palmitate biosynthesis I (animals and fungi)
AO9_00465	PWY-6113	superpathway of mycolate biosynthesis
AO9_00465	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AO9_00465	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AO9_00465	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AO9_00465	PWYG-321	mycolate biosynthesis
AO9_00605	PWY-1042	glycolysis IV (plant cytosol)
AO9_00605	PWY-5484	glycolysis II (from fructose 6-phosphate)
AO9_00605	PWY-6901	superpathway of glucose and xylose degradation
AO9_00605	PWY-7003	glycerol degradation to butanol
AO9_00630	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AO9_00630	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AO9_00630	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AO9_00630	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AO9_00630	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AO9_00630	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AO9_00630	PWY-7205	CMP phosphorylation
AO9_00630	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AO9_00630	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AO9_00630	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AO9_00630	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AO9_00630	PWY-7224	purine deoxyribonucleosides salvage
AO9_00630	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AO9_00630	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AO9_00635	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AO9_00635	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
AO9_00650	PWY-5269	cardiolipin biosynthesis II
AO9_00650	PWY-5668	cardiolipin biosynthesis I
AO9_00675	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AO9_00690	PWY-5686	UMP biosynthesis
AO9_00695	PWY-622	starch biosynthesis
AO9_00870	PWY-7560	methylerythritol phosphate pathway II
AO9_00915	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AO9_00915	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AO9_00930	PWY-7205	CMP phosphorylation
AO9_00980	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AO9_01050	PWY-7560	methylerythritol phosphate pathway II
AO9_01095	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AO9_01095	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AO9_01095	PWY-6897	thiamin salvage II
AO9_01095	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AO9_01095	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AO9_01095	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
AO9_01095	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AO9_01100	PWY-6897	thiamin salvage II
AO9_01100	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
AO9_01100	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AO9_01145	PWY-6167	flavin biosynthesis II (archaea)
AO9_01145	PWY-6168	flavin biosynthesis III (fungi)
AO9_01145	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AO9_01200	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AO9_01200	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AO9_01205	PWY-1622	formaldehyde assimilation I (serine pathway)
AO9_01205	PWY-181	photorespiration
AO9_01205	PWY-2161	folate polyglutamylation
AO9_01205	PWY-2201	folate transformations I
AO9_01205	PWY-3661	glycine betaine degradation I
AO9_01205	PWY-3661-1	glycine betaine degradation II (mammalian)
AO9_01205	PWY-3841	folate transformations II
AO9_01205	PWY-5497	purine nucleobases degradation II (anaerobic)
AO9_01215	PWY-2941	L-lysine biosynthesis II
AO9_01215	PWY-5097	L-lysine biosynthesis VI
AO9_01225	PWY-5839	menaquinol-7 biosynthesis
AO9_01225	PWY-5844	menaquinol-9 biosynthesis
AO9_01225	PWY-5849	menaquinol-6 biosynthesis
AO9_01225	PWY-5890	menaquinol-10 biosynthesis
AO9_01225	PWY-5891	menaquinol-11 biosynthesis
AO9_01225	PWY-5892	menaquinol-12 biosynthesis
AO9_01225	PWY-5895	menaquinol-13 biosynthesis
AO9_01235	PWY-5198	factor 420 biosynthesis
AO9_01340	PWY-5097	L-lysine biosynthesis VI
AO9_01395	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AO9_01395	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
AO9_01395	PWY-6164	3-dehydroquinate biosynthesis I
AO9_01435	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
AO9_01435	PWY-622	starch biosynthesis
AO9_01560	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AO9_01630	PWY-6891	thiazole biosynthesis II (Bacillus)
AO9_01630	PWY-6892	thiazole biosynthesis I (E. coli)
AO9_01630	PWY-7560	methylerythritol phosphate pathway II
AO9_01650	PWY-1042	glycolysis IV (plant cytosol)
AO9_01650	PWY-5484	glycolysis II (from fructose 6-phosphate)
AO9_01650	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AO9_01650	PWY-7003	glycerol degradation to butanol
AO9_01780	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AO9_01780	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AO9_01805	PWY-6749	CMP-legionaminate biosynthesis I
AO9_01810	PWY-6854	ethylene biosynthesis III (microbes)
AO9_01815	PWY-4381	fatty acid biosynthesis initiation I
AO9_01815	PWY-5743	3-hydroxypropanoate cycle
AO9_01815	PWY-5744	glyoxylate assimilation
AO9_01815	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AO9_01815	PWY-6679	jadomycin biosynthesis
AO9_01815	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AO9_01820	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AO9_01820	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AO9_01820	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AO9_01820	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
AO9_01865	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AO9_01865	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
AO9_01975	PWY-4381	fatty acid biosynthesis initiation I
AO9_01975	PWY-5743	3-hydroxypropanoate cycle
AO9_01975	PWY-5744	glyoxylate assimilation
AO9_01975	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AO9_01975	PWY-6679	jadomycin biosynthesis
AO9_01975	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AO9_02100	PWY-6823	molybdenum cofactor biosynthesis
AO9_02100	PWY-6891	thiazole biosynthesis II (Bacillus)
AO9_02100	PWY-6892	thiazole biosynthesis I (E. coli)
AO9_02100	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AO9_02120	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AO9_02155	PWY-5988	wound-induced proteolysis I
AO9_02155	PWY-6018	seed germination protein turnover
AO9_02200	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AO9_02205	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AO9_02215	PWY-7560	methylerythritol phosphate pathway II
AO9_02325	PWY-7560	methylerythritol phosphate pathway II
AO9_02360	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AO9_02360	PWY-2201	folate transformations I
AO9_02360	PWY-3841	folate transformations II
AO9_02360	PWY-5030	L-histidine degradation III
AO9_02360	PWY-5497	purine nucleobases degradation II (anaerobic)
AO9_02360	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AO9_02395	PWY-5941	glycogen degradation II (eukaryotic)
AO9_02395	PWY-6724	starch degradation II
AO9_02395	PWY-6737	starch degradation V
AO9_02395	PWY-7238	sucrose biosynthesis II
AO9_02425	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AO9_02425	PWY-6167	flavin biosynthesis II (archaea)
AO9_02425	PWY-6168	flavin biosynthesis III (fungi)
AO9_02460	PWY-6012	acyl carrier protein metabolism I
AO9_02460	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AO9_02490	PWY-5941	glycogen degradation II (eukaryotic)
AO9_02490	PWY-622	starch biosynthesis
AO9_02490	PWY-6731	starch degradation III
AO9_02490	PWY-6737	starch degradation V
AO9_02490	PWY-7238	sucrose biosynthesis II
AO9_02540	PWY-4381	fatty acid biosynthesis initiation I
AO9_02545	PWY-4381	fatty acid biosynthesis initiation I
AO9_02545	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AO9_02545	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AO9_02550	PWY-5367	petroselinate biosynthesis
AO9_02550	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AO9_02550	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AO9_02550	PWY-5989	stearate biosynthesis II (bacteria and plants)
AO9_02550	PWY-5994	palmitate biosynthesis I (animals and fungi)
AO9_02550	PWY-6113	superpathway of mycolate biosynthesis
AO9_02550	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AO9_02550	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AO9_02550	PWY-6951	AO9_02550|fabG|YP_007438218.1|GeneID:14553399
AO9_02550	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
AO9_02550	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AO9_02550	PWYG-321	mycolate biosynthesis
AO9_02665	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AO9_02665	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AO9_02665	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AO9_02665	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AO9_02665	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AO9_02665	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AO9_02685	PWY-7533	gliotoxin biosynthesis
AO9_02720	PWY-5381	pyridine nucleotide cycling (plants)
AO9_02720	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AO9_02720	PWY-6596	adenosine nucleotides degradation I
AO9_02720	PWY-6606	guanosine nucleotides degradation II
AO9_02720	PWY-6607	guanosine nucleotides degradation I
AO9_02720	PWY-6608	guanosine nucleotides degradation III
AO9_02720	PWY-7185	UTP and CTP dephosphorylation I
AO9_02790	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AO9_02810	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AO9_02810	PWY-6855	chitin degradation I (archaea)
AO9_02810	PWY-6906	chitin derivatives degradation
AO9_02815	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AO9_02870	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AO9_02870	PWY-5723	Rubisco shunt
AO9_02960	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AO9_03005	PWY-6700	queuosine biosynthesis
AO9_03060	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AO9_03060	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
AO9_03065	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AO9_03065	PWY-7177	UTP and CTP dephosphorylation II
AO9_03065	PWY-7185	UTP and CTP dephosphorylation I
AO9_03120	PWY-1042	glycolysis IV (plant cytosol)
AO9_03120	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AO9_03120	PWY-5484	glycolysis II (from fructose 6-phosphate)
AO9_03120	PWY-7385	1,3-propanediol biosynthesis (engineered)
AO9_03130	PWY-1042	glycolysis IV (plant cytosol)
AO9_03130	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AO9_03130	PWY-5484	glycolysis II (from fructose 6-phosphate)
AO9_03130	PWY-7385	1,3-propanediol biosynthesis (engineered)
AO9_03230	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AO9_03245	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AO9_03245	PWY-5723	Rubisco shunt
AO9_03275	PWY-5663	tetrahydrobiopterin biosynthesis I
AO9_03275	PWY-5664	tetrahydrobiopterin biosynthesis II
AO9_03275	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AO9_03275	PWY-6703	preQ<sub>0</sub> biosynthesis
AO9_03275	PWY-6983	tetrahydrobiopterin biosynthesis III
AO9_03275	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AO9_03335	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AO9_03355	PWY-6829	tRNA methylation (yeast)
AO9_03355	PWY-7285	methylwyosine biosynthesis
AO9_03355	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AO9_03460	PWY-1042	glycolysis IV (plant cytosol)
AO9_03460	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AO9_03460	PWY-5484	glycolysis II (from fructose 6-phosphate)
AO9_03460	PWY-5723	Rubisco shunt
AO9_03460	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AO9_03460	PWY-6886	1-butanol autotrophic biosynthesis
AO9_03460	PWY-6901	superpathway of glucose and xylose degradation
AO9_03460	PWY-7003	glycerol degradation to butanol
AO9_03460	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AO9_03460	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AO9_03500	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AO9_03505	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AO9_03530	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AO9_03530	PWY-5723	Rubisco shunt
AO9_03640	PWY-2941	L-lysine biosynthesis II
AO9_03640	PWY-2942	L-lysine biosynthesis III
AO9_03640	PWY-5097	L-lysine biosynthesis VI
AO9_03645	PWY-2941	L-lysine biosynthesis II
AO9_03645	PWY-2942	L-lysine biosynthesis III
AO9_03645	PWY-5097	L-lysine biosynthesis VI
AO9_03645	PWY-6559	spermidine biosynthesis II
AO9_03645	PWY-6562	norspermidine biosynthesis
AO9_03645	PWY-7153	grixazone biosynthesis
AO9_03650	PWY-2941	L-lysine biosynthesis II
AO9_03650	PWY-2942	L-lysine biosynthesis III
AO9_03650	PWY-5097	L-lysine biosynthesis VI
AO9_03650	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AO9_03650	PWY-6559	spermidine biosynthesis II
AO9_03650	PWY-6562	norspermidine biosynthesis
AO9_03650	PWY-7153	grixazone biosynthesis
AO9_03650	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AO9_03655	PWY-2941	L-lysine biosynthesis II
AO9_03655	PWY-2942	L-lysine biosynthesis III
AO9_03655	PWY-5097	L-lysine biosynthesis VI
AO9_03680	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AO9_03690	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AO9_03705	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AO9_03710	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AO9_03715	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AO9_03720	PWY-6164	3-dehydroquinate biosynthesis I
AO9_03725	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AO9_03725	PWY-6416	quinate degradation II
AO9_03725	PWY-6707	gallate biosynthesis
AO9_03740	PWY-40	putrescine biosynthesis I
AO9_03740	PWY-43	putrescine biosynthesis II
AO9_03740	PWY-6305	putrescine biosynthesis IV
AO9_03740	PWY-6834	spermidine biosynthesis III
AO9_03765	PWY-1622	formaldehyde assimilation I (serine pathway)
AO9_03765	PWY-5392	reductive TCA cycle II
AO9_03765	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AO9_03765	PWY-5690	TCA cycle II (plants and fungi)
AO9_03765	PWY-5913	TCA cycle VI (obligate autotrophs)
AO9_03765	PWY-6728	methylaspartate cycle
AO9_03765	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AO9_03765	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AO9_03765	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AO9_03775	PWY-3801	sucrose degradation II (sucrose synthase)
AO9_03775	PWY-5054	sorbitol biosynthesis I
AO9_03775	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AO9_03775	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AO9_03775	PWY-5659	GDP-mannose biosynthesis
AO9_03775	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AO9_03775	PWY-621	sucrose degradation III (sucrose invertase)
AO9_03775	PWY-622	starch biosynthesis
AO9_03775	PWY-6531	mannitol cycle
AO9_03775	PWY-6981	chitin biosynthesis
AO9_03775	PWY-7238	sucrose biosynthesis II
AO9_03775	PWY-7347	sucrose biosynthesis III
AO9_03775	PWY-7385	1,3-propanediol biosynthesis (engineered)
AO9_03815	PWY-6424	AO9_03815|AO9_03815|YP_007438467.1|GeneID:14553661
AO9_03820	PWY-7560	methylerythritol phosphate pathway II
AO9_03845	PWY-5392	reductive TCA cycle II
AO9_03845	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AO9_03845	PWY-5690	TCA cycle II (plants and fungi)
AO9_03845	PWY-5913	TCA cycle VI (obligate autotrophs)
AO9_03845	PWY-6728	methylaspartate cycle
AO9_03845	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AO9_03845	PWY-7254	TCA cycle VII (acetate-producers)
AO9_03845	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AO9_03855	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AO9_03975	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AO9_03975	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AO9_03990	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AO9_03990	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AO9_03990	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AO9_03990	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AO9_03990	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AO9_03990	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AO9_03990	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AO9_03990	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AO9_03995	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AO9_03995	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AO9_03995	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AO9_03995	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AO9_03995	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AO9_03995	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AO9_03995	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AO9_03995	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AO9_04025	PWY-5392	reductive TCA cycle II
AO9_04025	PWY-5537	pyruvate fermentation to acetate V
AO9_04025	PWY-5538	pyruvate fermentation to acetate VI
AO9_04025	PWY-5690	TCA cycle II (plants and fungi)
AO9_04025	PWY-5913	TCA cycle VI (obligate autotrophs)
AO9_04025	PWY-6728	methylaspartate cycle
AO9_04025	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AO9_04025	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AO9_04030	PWY-5392	reductive TCA cycle II
AO9_04030	PWY-5537	pyruvate fermentation to acetate V
AO9_04030	PWY-5538	pyruvate fermentation to acetate VI
AO9_04030	PWY-5690	TCA cycle II (plants and fungi)
AO9_04030	PWY-5913	TCA cycle VI (obligate autotrophs)
AO9_04030	PWY-6728	methylaspartate cycle
AO9_04030	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AO9_04030	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AO9_04050	PWY-6749	CMP-legionaminate biosynthesis I
AO9_04055	PWY-6749	CMP-legionaminate biosynthesis I
AO9_04175	PWY-5667	CDP-diacylglycerol biosynthesis I
AO9_04175	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
AO9_04200	PWY-7560	methylerythritol phosphate pathway II
AO9_04235	PWY-622	starch biosynthesis
AO9_04240	PWY-5269	cardiolipin biosynthesis II
AO9_04240	PWY-5668	cardiolipin biosynthesis I
AO9_04395	PWY-5198	factor 420 biosynthesis
AO9_04400	PWY-2781	<i>cis</i>-zeatin biosynthesis
AO9_04425	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AO9_04425	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AO9_04430	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AO9_04430	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AO9_04430	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AO9_04430	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AO9_04445	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AO9_04445	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AO9_04450	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AO9_04450	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AO9_04450	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AO9_04455	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AO9_04455	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AO9_04490	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AO9_04490	PWY-5723	Rubisco shunt
AO9_04490	PWY-6891	thiazole biosynthesis II (Bacillus)
AO9_04490	PWY-6892	thiazole biosynthesis I (E. coli)
AO9_04490	PWY-6901	superpathway of glucose and xylose degradation
AO9_04490	PWY-7560	methylerythritol phosphate pathway II
AO9_04505	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AO9_04505	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AO9_04515	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AO9_04515	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AO9_04595	PWY-6167	flavin biosynthesis II (archaea)
AO9_04595	PWY-6168	flavin biosynthesis III (fungi)
AO9_04600	PWY-6167	flavin biosynthesis II (archaea)
AO9_04600	PWY-6168	flavin biosynthesis III (fungi)
AO9_04600	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AO9_04610	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AO9_04630	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AO9_04630	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
AO9_04645	PWY-1622	formaldehyde assimilation I (serine pathway)
AO9_04645	PWY-5484	glycolysis II (from fructose 6-phosphate)
AO9_04670	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AO9_04685	PWY-5667	CDP-diacylglycerol biosynthesis I
AO9_04685	PWY-5981	CDP-diacylglycerol biosynthesis III
AO9_04705	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AO9_04760	PWY-5669	phosphatidylethanolamine biosynthesis I
AO9_04790	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AO9_04790	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AO9_04795	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AO9_04795	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
AO9_04795	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AO9_04950	PWY-1042	glycolysis IV (plant cytosol)
AO9_04950	PWY-1622	formaldehyde assimilation I (serine pathway)
AO9_04950	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AO9_04950	PWY-5484	glycolysis II (from fructose 6-phosphate)
AO9_04950	PWY-5723	Rubisco shunt
AO9_04950	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AO9_04950	PWY-6886	1-butanol autotrophic biosynthesis
AO9_04950	PWY-6901	superpathway of glucose and xylose degradation
AO9_04950	PWY-7003	glycerol degradation to butanol
AO9_04950	PWY-7124	ethylene biosynthesis V (engineered)
AO9_04950	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AO9_04975	PWY-3781	aerobic respiration I (cytochrome c)
AO9_04975	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AO9_04975	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AO9_04975	PWY-5690	TCA cycle II (plants and fungi)
AO9_04975	PWY-6728	methylaspartate cycle
AO9_04975	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AO9_04975	PWY-7254	TCA cycle VII (acetate-producers)
AO9_04975	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AO9_04980	PWY-3781	aerobic respiration I (cytochrome c)
AO9_04980	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AO9_04980	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AO9_04980	PWY-5690	TCA cycle II (plants and fungi)
AO9_04980	PWY-6728	methylaspartate cycle
AO9_04980	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AO9_04980	PWY-7254	TCA cycle VII (acetate-producers)
AO9_04980	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AO9_05050	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
AO9_05125	PWY-5199	factor 420 polyglutamylation
AO9_05130	PWY-3841	folate transformations II
AO9_05130	PWY-6614	tetrahydrofolate biosynthesis
AO9_05135	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AO9_05135	PWY-6148	tetrahydromethanopterin biosynthesis
AO9_05135	PWY-6614	tetrahydrofolate biosynthesis
AO9_05135	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AO9_05135	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AO9_05140	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AO9_05140	PWY-6148	tetrahydromethanopterin biosynthesis
AO9_05140	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AO9_05140	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AO9_05180	PWY-3221	dTDP-L-rhamnose biosynthesis II
AO9_05180	PWY-6808	dTDP-D-forosamine biosynthesis
AO9_05180	PWY-6942	dTDP-D-desosamine biosynthesis
AO9_05180	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AO9_05180	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AO9_05180	PWY-6974	dTDP-L-olivose biosynthesis
AO9_05180	PWY-6976	dTDP-L-mycarose biosynthesis
AO9_05180	PWY-7104	dTDP-L-megosamine biosynthesis
AO9_05180	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AO9_05180	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AO9_05180	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AO9_05180	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AO9_05180	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AO9_05180	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AO9_05180	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AO9_05180	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AO9_05195	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
