Cag_0005	PWY-6749	CMP-legionaminate biosynthesis I
Cag_0006	PWY-5686	UMP biosynthesis
Cag_0008	PWY-7560	methylerythritol phosphate pathway II
Cag_0017	PWY-5686	UMP biosynthesis
Cag_0018	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
Cag_0019	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Cag_0019	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cag_0019	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Cag_0044	PWY-1042	glycolysis IV (plant cytosol)
Cag_0044	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cag_0044	PWY-6886	1-butanol autotrophic biosynthesis
Cag_0044	PWY-6901	superpathway of glucose and xylose degradation
Cag_0044	PWY-7003	glycerol degradation to butanol
Cag_0046	PWY-3461	L-tyrosine biosynthesis II
Cag_0046	PWY-3462	L-phenylalanine biosynthesis II
Cag_0046	PWY-6120	L-tyrosine biosynthesis III
Cag_0046	PWY-6627	salinosporamide A biosynthesis
Cag_0051	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cag_0051	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cag_0052	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cag_0052	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cag_0052	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cag_0053	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cag_0053	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cag_0055	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cag_0055	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Cag_0055	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cag_0055	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cag_0056	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cag_0056	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cag_0069	PWY-5381	pyridine nucleotide cycling (plants)
Cag_0069	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Cag_0074	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cag_0074	PWY-5723	Rubisco shunt
Cag_0077	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Cag_0077	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Cag_0078	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Cag_0081	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cag_0082	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Cag_0090	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Cag_0090	PWY-7177	UTP and CTP dephosphorylation II
Cag_0090	PWY-7185	UTP and CTP dephosphorylation I
Cag_0106	PWY-6832	2-aminoethylphosphonate degradation II
Cag_0107	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cag_0107	PWY-5686	UMP biosynthesis
Cag_0107	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cag_0119	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cag_0119	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cag_0127	PWY-3781	aerobic respiration I (cytochrome c)
Cag_0127	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cag_0127	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cag_0127	PWY-5690	TCA cycle II (plants and fungi)
Cag_0127	PWY-6728	methylaspartate cycle
Cag_0127	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cag_0127	PWY-7254	TCA cycle VII (acetate-producers)
Cag_0127	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cag_0128	PWY-3781	aerobic respiration I (cytochrome c)
Cag_0128	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cag_0128	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cag_0128	PWY-5690	TCA cycle II (plants and fungi)
Cag_0128	PWY-6728	methylaspartate cycle
Cag_0128	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cag_0128	PWY-7254	TCA cycle VII (acetate-producers)
Cag_0128	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cag_0130	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cag_0130	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cag_0131	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
Cag_0132	PWY-6167	flavin biosynthesis II (archaea)
Cag_0132	PWY-6168	flavin biosynthesis III (fungi)
Cag_0137	PWY-5667	CDP-diacylglycerol biosynthesis I
Cag_0137	PWY-5981	CDP-diacylglycerol biosynthesis III
Cag_0137	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
Cag_0137	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Cag_0139	PWY-702	L-methionine biosynthesis II
Cag_0140	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cag_0142	PWY-2941	L-lysine biosynthesis II
Cag_0142	PWY-2942	L-lysine biosynthesis III
Cag_0142	PWY-5097	L-lysine biosynthesis VI
Cag_0142	PWY-6559	spermidine biosynthesis II
Cag_0142	PWY-6562	norspermidine biosynthesis
Cag_0142	PWY-7153	grixazone biosynthesis
Cag_0155	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Cag_0155	PWY-6549	L-glutamine biosynthesis III
Cag_0155	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cag_0155	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Cag_0161	PWY-2301	<i>myo</i>-inositol biosynthesis
Cag_0161	PWY-4702	phytate degradation I
Cag_0161	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
Cag_0162	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Cag_0162	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Cag_0162	PWY-5989	stearate biosynthesis II (bacteria and plants)
Cag_0162	PWY-5994	palmitate biosynthesis I (animals and fungi)
Cag_0162	PWY-6113	superpathway of mycolate biosynthesis
Cag_0162	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Cag_0162	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cag_0162	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cag_0162	PWYG-321	mycolate biosynthesis
Cag_0163	PWY-5269	cardiolipin biosynthesis II
Cag_0163	PWY-5668	cardiolipin biosynthesis I
Cag_0171	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cag_0171	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cag_0171	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cag_0173	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cag_0173	PWY-5686	UMP biosynthesis
Cag_0173	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cag_0175	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cag_0175	PWY-5723	Rubisco shunt
Cag_0180	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Cag_0187	PWY-1622	formaldehyde assimilation I (serine pathway)
Cag_0187	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cag_0188	PWY-723	alkylnitronates degradation
Cag_0204	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cag_0204	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Cag_0204	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cag_0204	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cag_0204	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Cag_0204	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cag_0204	PWY-7205	CMP phosphorylation
Cag_0204	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cag_0204	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cag_0204	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cag_0204	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cag_0204	PWY-7224	purine deoxyribonucleosides salvage
Cag_0204	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cag_0204	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Cag_0206	PWY-6823	molybdenum cofactor biosynthesis
Cag_0206	PWY-6891	thiazole biosynthesis II (Bacillus)
Cag_0206	PWY-6892	thiazole biosynthesis I (E. coli)
Cag_0206	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Cag_0227	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cag_0227	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cag_0228	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cag_0228	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cag_0230	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cag_0230	PWY-6148	tetrahydromethanopterin biosynthesis
Cag_0230	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Cag_0230	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Cag_0233	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cag_0233	PWY-6148	tetrahydromethanopterin biosynthesis
Cag_0233	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Cag_0233	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Cag_0234	PWY-5316	nicotine biosynthesis
Cag_0234	PWY-5381	pyridine nucleotide cycling (plants)
Cag_0234	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Cag_0234	PWY-7342	superpathway of nicotine biosynthesis
Cag_0235	PWY-6012	acyl carrier protein metabolism I
Cag_0235	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Cag_0258	PWY-6123	inosine-5'-phosphate biosynthesis I
Cag_0258	PWY-6124	inosine-5'-phosphate biosynthesis II
Cag_0258	PWY-7234	inosine-5'-phosphate biosynthesis III
Cag_0282	PWY-2941	L-lysine biosynthesis II
Cag_0282	PWY-2942	L-lysine biosynthesis III
Cag_0282	PWY-5097	L-lysine biosynthesis VI
Cag_0282	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cag_0282	PWY-6559	spermidine biosynthesis II
Cag_0282	PWY-6562	norspermidine biosynthesis
Cag_0282	PWY-7153	grixazone biosynthesis
Cag_0282	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cag_0286	PWY-6123	inosine-5'-phosphate biosynthesis I
Cag_0286	PWY-7234	inosine-5'-phosphate biosynthesis III
Cag_0289	PWY-4381	fatty acid biosynthesis initiation I
Cag_0289	PWY-5743	3-hydroxypropanoate cycle
Cag_0289	PWY-5744	glyoxylate assimilation
Cag_0289	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cag_0289	PWY-6679	jadomycin biosynthesis
Cag_0289	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cag_0291	PWY-5381	pyridine nucleotide cycling (plants)
Cag_0291	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Cag_0291	PWY-6596	adenosine nucleotides degradation I
Cag_0291	PWY-6606	guanosine nucleotides degradation II
Cag_0291	PWY-6607	guanosine nucleotides degradation I
Cag_0291	PWY-6608	guanosine nucleotides degradation III
Cag_0291	PWY-7185	UTP and CTP dephosphorylation I
Cag_0298	PWY-5958	acridone alkaloid biosynthesis
Cag_0298	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Cag_0298	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Cag_0320	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cag_0320	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cag_0324	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
Cag_0338	PWY-5392	reductive TCA cycle II
Cag_0338	PWY-5537	pyruvate fermentation to acetate V
Cag_0338	PWY-5538	pyruvate fermentation to acetate VI
Cag_0338	PWY-5690	TCA cycle II (plants and fungi)
Cag_0338	PWY-5913	TCA cycle VI (obligate autotrophs)
Cag_0338	PWY-6728	methylaspartate cycle
Cag_0338	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cag_0338	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cag_0339	PWY-6788	cellulose degradation II (fungi)
Cag_0340	PWY-1001	cellulose biosynthesis
Cag_0342	PWY-2941	L-lysine biosynthesis II
Cag_0342	PWY-5097	L-lysine biosynthesis VI
Cag_0343	PWY-101	photosynthesis light reactions
Cag_0343	PWY-6785	hydrogen production VIII
Cag_0347	PWY-1042	glycolysis IV (plant cytosol)
Cag_0347	PWY-1622	formaldehyde assimilation I (serine pathway)
Cag_0347	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cag_0347	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cag_0347	PWY-5723	Rubisco shunt
Cag_0347	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cag_0347	PWY-6886	1-butanol autotrophic biosynthesis
Cag_0347	PWY-6901	superpathway of glucose and xylose degradation
Cag_0347	PWY-7003	glycerol degradation to butanol
Cag_0347	PWY-7124	ethylene biosynthesis V (engineered)
Cag_0347	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Cag_0349	PWY-7560	methylerythritol phosphate pathway II
Cag_0363	PWY-4381	fatty acid biosynthesis initiation I
Cag_0363	PWY-5743	3-hydroxypropanoate cycle
Cag_0363	PWY-5744	glyoxylate assimilation
Cag_0363	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cag_0363	PWY-6679	jadomycin biosynthesis
Cag_0363	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cag_0372	PWY-5663	tetrahydrobiopterin biosynthesis I
Cag_0372	PWY-5664	tetrahydrobiopterin biosynthesis II
Cag_0372	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cag_0372	PWY-6703	preQ<sub>0</sub> biosynthesis
Cag_0372	PWY-6983	tetrahydrobiopterin biosynthesis III
Cag_0372	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Cag_0373	PWY-5663	tetrahydrobiopterin biosynthesis I
Cag_0373	PWY-5664	tetrahydrobiopterin biosynthesis II
Cag_0373	PWY-6983	tetrahydrobiopterin biosynthesis III
Cag_0373	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Cag_0382	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Cag_0390	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cag_0392	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cag_0394	PWY-101	photosynthesis light reactions
Cag_0394	PWY-6785	hydrogen production VIII
Cag_0400	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
Cag_0406	PWY-5491	diethylphosphate degradation
Cag_0412	PWY-5381	pyridine nucleotide cycling (plants)
Cag_0420	PWY-6614	tetrahydrofolate biosynthesis
Cag_0422	PWY-5958	acridone alkaloid biosynthesis
Cag_0422	PWY-6543	4-aminobenzoate biosynthesis
Cag_0422	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Cag_0422	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Cag_0422	PWY-6722	candicidin biosynthesis
Cag_0433	PWY-40	putrescine biosynthesis I
Cag_0433	PWY-43	putrescine biosynthesis II
Cag_0433	PWY-6305	putrescine biosynthesis IV
Cag_0433	PWY-6834	spermidine biosynthesis III
Cag_0454	PWY-6749	CMP-legionaminate biosynthesis I
Cag_0458	PWY-2161	folate polyglutamylation
Cag_0459	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cag_0465	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Cag_0466	PWY-5392	reductive TCA cycle II
Cag_0466	PWY-5537	pyruvate fermentation to acetate V
Cag_0466	PWY-5538	pyruvate fermentation to acetate VI
Cag_0466	PWY-5690	TCA cycle II (plants and fungi)
Cag_0466	PWY-5913	TCA cycle VI (obligate autotrophs)
Cag_0466	PWY-6728	methylaspartate cycle
Cag_0466	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cag_0466	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cag_0474	PWY-6749	CMP-legionaminate biosynthesis I
Cag_0483	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Cag_0489	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Cag_0489	PWY-6596	adenosine nucleotides degradation I
Cag_0489	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cag_0493	PWY-5958	acridone alkaloid biosynthesis
Cag_0493	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Cag_0493	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Cag_0497	PWY-1042	glycolysis IV (plant cytosol)
Cag_0497	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cag_0497	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cag_0497	PWY-7003	glycerol degradation to butanol
Cag_0504	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cag_0504	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Cag_0505	PWY-6703	preQ<sub>0</sub> biosynthesis
Cag_0512	PWY-3221	dTDP-L-rhamnose biosynthesis II
Cag_0512	PWY-6808	dTDP-D-forosamine biosynthesis
Cag_0512	PWY-6942	dTDP-D-desosamine biosynthesis
Cag_0512	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Cag_0512	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Cag_0512	PWY-6974	dTDP-L-olivose biosynthesis
Cag_0512	PWY-6976	dTDP-L-mycarose biosynthesis
Cag_0512	PWY-7104	dTDP-L-megosamine biosynthesis
Cag_0512	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Cag_0512	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Cag_0512	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Cag_0512	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Cag_0512	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Cag_0512	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Cag_0512	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Cag_0512	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Cag_0516	PWY-3221	dTDP-L-rhamnose biosynthesis II
Cag_0516	PWY-6808	dTDP-D-forosamine biosynthesis
Cag_0516	PWY-6942	dTDP-D-desosamine biosynthesis
Cag_0516	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Cag_0516	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Cag_0516	PWY-6974	dTDP-L-olivose biosynthesis
Cag_0516	PWY-6976	dTDP-L-mycarose biosynthesis
Cag_0516	PWY-7104	dTDP-L-megosamine biosynthesis
Cag_0516	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Cag_0516	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Cag_0516	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Cag_0516	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Cag_0516	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Cag_0516	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Cag_0516	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Cag_0516	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Cag_0517	PWY-3821	galactose degradation III
Cag_0517	PWY-6317	galactose degradation I (Leloir pathway)
Cag_0517	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Cag_0517	PWY-6527	stachyose degradation
Cag_0517	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Cag_0517	PWY-7344	UDP-D-galactose biosynthesis
Cag_0518	PWY-5659	GDP-mannose biosynthesis
Cag_0518	PWY-6073	alginate biosynthesis I (algal)
Cag_0518	PWY-6082	alginate biosynthesis II (bacterial)
Cag_0518	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Cag_0525	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cag_0525	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cag_0525	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cag_0525	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cag_0537	PWY-101	photosynthesis light reactions
Cag_0537	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Cag_0560	PWY-5839	menaquinol-7 biosynthesis
Cag_0560	PWY-5844	menaquinol-9 biosynthesis
Cag_0560	PWY-5849	menaquinol-6 biosynthesis
Cag_0560	PWY-5890	menaquinol-10 biosynthesis
Cag_0560	PWY-5891	menaquinol-11 biosynthesis
Cag_0560	PWY-5892	menaquinol-12 biosynthesis
Cag_0560	PWY-5895	menaquinol-13 biosynthesis
Cag_0565	PWY-6605	adenine and adenosine salvage II
Cag_0565	PWY-6610	adenine and adenosine salvage IV
Cag_0571	PWY-7205	CMP phosphorylation
Cag_0573	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cag_0573	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cag_0579	PWY-7560	methylerythritol phosphate pathway II
Cag_0589	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cag_0602	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cag_0612	PWY-3801	sucrose degradation II (sucrose synthase)
Cag_0612	PWY-5054	sorbitol biosynthesis I
Cag_0612	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Cag_0612	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cag_0612	PWY-5659	GDP-mannose biosynthesis
Cag_0612	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cag_0612	PWY-621	sucrose degradation III (sucrose invertase)
Cag_0612	PWY-622	starch biosynthesis
Cag_0612	PWY-6531	mannitol cycle
Cag_0612	PWY-6981	chitin biosynthesis
Cag_0612	PWY-7238	sucrose biosynthesis II
Cag_0612	PWY-7347	sucrose biosynthesis III
Cag_0612	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cag_0622	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cag_0625	PWY-6167	flavin biosynthesis II (archaea)
Cag_0625	PWY-6168	flavin biosynthesis III (fungi)
Cag_0625	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cag_0647	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cag_0647	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cag_0647	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cag_0651	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Cag_0652	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Cag_0652	PWY-5739	GDP-D-perosamine biosynthesis
Cag_0652	PWY-5740	GDP-L-colitose biosynthesis
Cag_0652	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Cag_0695	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Cag_0703	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cag_0703	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cag_0703	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cag_0703	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cag_0703	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cag_0703	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cag_0703	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cag_0703	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Cag_0712	PWY-6700	queuosine biosynthesis
Cag_0728	PWY-1042	glycolysis IV (plant cytosol)
Cag_0728	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cag_0728	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cag_0728	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cag_0728	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cag_0730	PWY-4983	L-citrulline-nitric oxide cycle
Cag_0730	PWY-4984	urea cycle
Cag_0730	PWY-5	canavanine biosynthesis
Cag_0730	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cag_0730	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cag_0731	PWY-5340	sulfate activation for sulfonation
Cag_0753	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cag_0753	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cag_0753	PWY-6268	adenosylcobalamin salvage from cobalamin
Cag_0753	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cag_0772	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cag_0772	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cag_0773	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cag_0774	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cag_0774	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cag_0775	PWY-4981	L-proline biosynthesis II (from arginine)
Cag_0775	PWY-4984	urea cycle
Cag_0775	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cag_0777	PWY-4983	L-citrulline-nitric oxide cycle
Cag_0777	PWY-4984	urea cycle
Cag_0777	PWY-5	canavanine biosynthesis
Cag_0777	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cag_0777	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cag_0779	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Cag_0779	PWY-2201	folate transformations I
Cag_0779	PWY-3841	folate transformations II
Cag_0779	PWY-5030	L-histidine degradation III
Cag_0779	PWY-5497	purine nucleobases degradation II (anaerobic)
Cag_0779	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Cag_0784	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cag_0784	PWY-6416	quinate degradation II
Cag_0784	PWY-6707	gallate biosynthesis
Cag_0787	PWY-5491	diethylphosphate degradation
Cag_0796	PWY-5392	reductive TCA cycle II
Cag_0796	PWY-5537	pyruvate fermentation to acetate V
Cag_0796	PWY-5538	pyruvate fermentation to acetate VI
Cag_0796	PWY-5690	TCA cycle II (plants and fungi)
Cag_0796	PWY-5913	TCA cycle VI (obligate autotrophs)
Cag_0796	PWY-6728	methylaspartate cycle
Cag_0796	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cag_0796	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cag_0797	PWY-5392	reductive TCA cycle II
Cag_0797	PWY-5537	pyruvate fermentation to acetate V
Cag_0797	PWY-5538	pyruvate fermentation to acetate VI
Cag_0797	PWY-5690	TCA cycle II (plants and fungi)
Cag_0797	PWY-5913	TCA cycle VI (obligate autotrophs)
Cag_0797	PWY-6728	methylaspartate cycle
Cag_0797	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cag_0797	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cag_0799	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cag_0799	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cag_0802	PWY-6829	tRNA methylation (yeast)
Cag_0802	PWY-7285	methylwyosine biosynthesis
Cag_0802	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Cag_0815	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Cag_0815	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Cag_0815	PWY-6897	thiamin salvage II
Cag_0815	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Cag_0815	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Cag_0815	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Cag_0815	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cag_0816	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Cag_0816	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Cag_0816	PWY-6897	thiamin salvage II
Cag_0816	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Cag_0816	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Cag_0816	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Cag_0816	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cag_0817	PWY-6910	hydroxymethylpyrimidine salvage
Cag_0817	PWY-7356	thiamin salvage IV (yeast)
Cag_0817	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cag_0821	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Cag_0823	PWY-5988	wound-induced proteolysis I
Cag_0823	PWY-6018	seed germination protein turnover
Cag_0827	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cag_0846	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cag_0846	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cag_0846	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cag_0860	PWY-5392	reductive TCA cycle II
Cag_0860	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cag_0860	PWY-5690	TCA cycle II (plants and fungi)
Cag_0860	PWY-5913	TCA cycle VI (obligate autotrophs)
Cag_0860	PWY-6728	methylaspartate cycle
Cag_0860	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cag_0860	PWY-7254	TCA cycle VII (acetate-producers)
Cag_0860	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cag_0862	PWY-1622	formaldehyde assimilation I (serine pathway)
Cag_0862	PWY-5392	reductive TCA cycle II
Cag_0862	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cag_0862	PWY-5690	TCA cycle II (plants and fungi)
Cag_0862	PWY-5913	TCA cycle VI (obligate autotrophs)
Cag_0862	PWY-6728	methylaspartate cycle
Cag_0862	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cag_0862	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cag_0862	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cag_0879	PWY-1042	glycolysis IV (plant cytosol)
Cag_0879	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cag_0879	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cag_0879	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cag_0898	PWY-5686	UMP biosynthesis
Cag_0905	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cag_0905	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cag_0906	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Cag_0906	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Cag_0907	PWY-6654	phosphopantothenate biosynthesis III
Cag_0925	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cag_0925	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cag_0925	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cag_0925	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Cag_0925	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cag_0925	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cag_0928	PWY-6700	queuosine biosynthesis
Cag_0929	PWY-7560	methylerythritol phosphate pathway II
Cag_0937	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cag_0937	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cag_0937	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cag_0938	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cag_0938	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cag_0938	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cag_0939	PWY-5669	phosphatidylethanolamine biosynthesis I
Cag_0940	PWY-43	putrescine biosynthesis II
Cag_0943	PWY-5839	menaquinol-7 biosynthesis
Cag_0943	PWY-5851	demethylmenaquinol-9 biosynthesis
Cag_0943	PWY-5852	demethylmenaquinol-8 biosynthesis I
Cag_0943	PWY-5853	demethylmenaquinol-6 biosynthesis I
Cag_0943	PWY-5890	menaquinol-10 biosynthesis
Cag_0943	PWY-5891	menaquinol-11 biosynthesis
Cag_0943	PWY-5892	menaquinol-12 biosynthesis
Cag_0943	PWY-5895	menaquinol-13 biosynthesis
Cag_0944	PWY-101	photosynthesis light reactions
Cag_0944	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Cag_0967	PWY-6854	ethylene biosynthesis III (microbes)
Cag_0983	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cag_0983	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cag_1011	PWY-5443	aminopropanol phosphate biosynthesis I
Cag_1013	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cag_1013	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Cag_1019	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cag_1019	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cag_1019	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cag_1020	PWY-6938	NADH repair
Cag_1057	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cag_1057	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cag_1057	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cag_1058	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cag_1058	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cag_1058	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cag_1060	PWY-5964	guanylyl molybdenum cofactor biosynthesis
Cag_1064	PWY-6823	molybdenum cofactor biosynthesis
Cag_1068	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Cag_1068	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Cag_1068	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Cag_1073	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cag_1073	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cag_1108	PWY-2201	folate transformations I
Cag_1108	PWY-3841	folate transformations II
Cag_1109	PWY-2941	L-lysine biosynthesis II
Cag_1109	PWY-2942	L-lysine biosynthesis III
Cag_1109	PWY-5097	L-lysine biosynthesis VI
Cag_1126	PWY-5743	3-hydroxypropanoate cycle
Cag_1126	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cag_1126	PWY-6728	methylaspartate cycle
Cag_1126	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cag_1127	PWY-4381	fatty acid biosynthesis initiation I
Cag_1127	PWY-5743	3-hydroxypropanoate cycle
Cag_1127	PWY-5744	glyoxylate assimilation
Cag_1127	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cag_1127	PWY-6679	jadomycin biosynthesis
Cag_1127	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cag_1132	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cag_1132	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cag_1139	PWY-6123	inosine-5'-phosphate biosynthesis I
Cag_1139	PWY-6124	inosine-5'-phosphate biosynthesis II
Cag_1139	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cag_1139	PWY-7234	inosine-5'-phosphate biosynthesis III
Cag_1159	PWY-5316	nicotine biosynthesis
Cag_1159	PWY-7342	superpathway of nicotine biosynthesis
Cag_1160	PWY-40	putrescine biosynthesis I
Cag_1160	PWY-43	putrescine biosynthesis II
Cag_1160	PWY-6305	putrescine biosynthesis IV
Cag_1160	PWY-6834	spermidine biosynthesis III
Cag_1163	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cag_1163	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cag_1168	PWY-5316	nicotine biosynthesis
Cag_1168	PWY-7342	superpathway of nicotine biosynthesis
Cag_1171	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Cag_1171	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cag_1171	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cag_1171	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Cag_1206	PWY-5344	L-homocysteine biosynthesis
Cag_1213	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Cag_1213	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Cag_1213	PWY-6896	thiamin salvage I
Cag_1213	PWY-6897	thiamin salvage II
Cag_1218	PWY-3961	phosphopantothenate biosynthesis II
Cag_1219	PWY-6164	3-dehydroquinate biosynthesis I
Cag_1220	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cag_1222	PWY-5743	3-hydroxypropanoate cycle
Cag_1222	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cag_1222	PWY-6728	methylaspartate cycle
Cag_1222	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cag_1223	PWY-5743	3-hydroxypropanoate cycle
Cag_1223	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cag_1223	PWY-6728	methylaspartate cycle
Cag_1223	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cag_1229	PWY-3081	L-lysine biosynthesis V
Cag_1229	PWY-6871	3-methylbutanol biosynthesis
Cag_1251	PWY-6823	molybdenum cofactor biosynthesis
Cag_1257	PWY-5344	L-homocysteine biosynthesis
Cag_1257	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Cag_1258	PWY-6936	seleno-amino acid biosynthesis
Cag_1267	PWY-6891	thiazole biosynthesis II (Bacillus)
Cag_1267	PWY-6892	thiazole biosynthesis I (E. coli)
Cag_1268	PWY-6892	thiazole biosynthesis I (E. coli)
Cag_1268	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Cag_1276	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Cag_1276	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Cag_1282	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cag_1282	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cag_1286	PWY-5747	2-methylcitrate cycle II
Cag_1288	PWY-6700	queuosine biosynthesis
Cag_1313	PWY-6703	preQ<sub>0</sub> biosynthesis
Cag_1333	PWY-7560	methylerythritol phosphate pathway II
Cag_1334	PWY-5686	UMP biosynthesis
Cag_1345	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cag_1350	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cag_1351	PWY-4202	arsenate detoxification I (glutaredoxin)
Cag_1351	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Cag_1351	PWY-6608	guanosine nucleotides degradation III
Cag_1351	PWY-6609	adenine and adenosine salvage III
Cag_1351	PWY-6611	adenine and adenosine salvage V
Cag_1351	PWY-6620	guanine and guanosine salvage
Cag_1351	PWY-6627	salinosporamide A biosynthesis
Cag_1351	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Cag_1351	PWY-7179	purine deoxyribonucleosides degradation I
Cag_1351	PWY-7179-1	purine deoxyribonucleosides degradation
Cag_1355	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
Cag_1355	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Cag_1356	PWY-3781	aerobic respiration I (cytochrome c)
Cag_1356	PWY-4521	arsenite oxidation I (respiratory)
Cag_1356	PWY-6692	Fe(II) oxidation
Cag_1356	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cag_1357	PWY-3781	aerobic respiration I (cytochrome c)
Cag_1357	PWY-4521	arsenite oxidation I (respiratory)
Cag_1357	PWY-6692	Fe(II) oxidation
Cag_1357	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cag_1376	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cag_1376	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cag_1376	PWY-6164	3-dehydroquinate biosynthesis I
Cag_1394	PWY-2781	<i>cis</i>-zeatin biosynthesis
Cag_1410	PWY-5913	TCA cycle VI (obligate autotrophs)
Cag_1410	PWY-6549	L-glutamine biosynthesis III
Cag_1410	PWY-6728	methylaspartate cycle
Cag_1410	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cag_1410	PWY-7124	ethylene biosynthesis V (engineered)
Cag_1410	PWY-7254	TCA cycle VII (acetate-producers)
Cag_1410	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cag_1411	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Cag_1411	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Cag_1411	PWY-5989	stearate biosynthesis II (bacteria and plants)
Cag_1411	PWY-6113	superpathway of mycolate biosynthesis
Cag_1411	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Cag_1411	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cag_1411	PWY-7096	triclosan resistance
Cag_1411	PWYG-321	mycolate biosynthesis
Cag_1418	PWY-5269	cardiolipin biosynthesis II
Cag_1418	PWY-5668	cardiolipin biosynthesis I
Cag_1419	PWY-5269	cardiolipin biosynthesis II
Cag_1419	PWY-5668	cardiolipin biosynthesis I
Cag_1420	PWY-1042	glycolysis IV (plant cytosol)
Cag_1420	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cag_1420	PWY-6901	superpathway of glucose and xylose degradation
Cag_1420	PWY-7003	glycerol degradation to butanol
Cag_1430	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cag_1430	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cag_1435	PWY-6123	inosine-5'-phosphate biosynthesis I
Cag_1435	PWY-6124	inosine-5'-phosphate biosynthesis II
Cag_1435	PWY-7234	inosine-5'-phosphate biosynthesis III
Cag_1437	PWY-6891	thiazole biosynthesis II (Bacillus)
Cag_1437	PWY-6892	thiazole biosynthesis I (E. coli)
Cag_1437	PWY-7560	methylerythritol phosphate pathway II
Cag_1445	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
Cag_1445	PWY-6174	mevalonate pathway II (archaea)
Cag_1445	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
Cag_1445	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
Cag_1445	PWY-7102	bisabolene biosynthesis
Cag_1445	PWY-7391	isoprene biosynthesis II (engineered)
Cag_1445	PWY-7524	mevalonate pathway III (archaea)
Cag_1445	PWY-7560	methylerythritol phosphate pathway II
Cag_1445	PWY-922	mevalonate pathway I
Cag_1450	PWY-5155	&beta;-alanine biosynthesis III
Cag_1456	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cag_1459	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Cag_1459	PWY-6167	flavin biosynthesis II (archaea)
Cag_1459	PWY-6168	flavin biosynthesis III (fungi)
Cag_1514	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cag_1514	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cag_1515	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cag_1515	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cag_1516	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cag_1519	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cag_1520	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cag_1520	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cag_1521	PWY-4381	fatty acid biosynthesis initiation I
Cag_1521	PWY-5743	3-hydroxypropanoate cycle
Cag_1521	PWY-5744	glyoxylate assimilation
Cag_1521	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cag_1521	PWY-6679	jadomycin biosynthesis
Cag_1521	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cag_1547	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Cag_1547	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Cag_1548	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Cag_1587	PWY-5278	sulfite oxidation III
Cag_1587	PWY-5340	sulfate activation for sulfonation
Cag_1587	PWY-6683	sulfate reduction III (assimilatory)
Cag_1587	PWY-6932	selenate reduction
Cag_1588	PWY-381	nitrate reduction II (assimilatory)
Cag_1588	PWY-5675	nitrate reduction V (assimilatory)
Cag_1588	PWY-6549	L-glutamine biosynthesis III
Cag_1588	PWY-6963	ammonia assimilation cycle I
Cag_1588	PWY-6964	ammonia assimilation cycle II
Cag_1595	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cag_1595	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cag_1595	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cag_1595	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Cag_1620	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cag_1620	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cag_1621	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cag_1621	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cag_1631	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cag_1635	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cag_1640	PWY-5532	adenosine nucleotides degradation IV
Cag_1640	PWY-5723	Rubisco shunt
Cag_1662	PWY-5367	petroselinate biosynthesis
Cag_1662	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Cag_1662	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Cag_1662	PWY-5989	stearate biosynthesis II (bacteria and plants)
Cag_1662	PWY-5994	palmitate biosynthesis I (animals and fungi)
Cag_1662	PWY-6113	superpathway of mycolate biosynthesis
Cag_1662	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Cag_1662	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cag_1662	PWY-6951	Cag_1662|Cag_1662|YP_379957.1|GeneID:3747256
Cag_1662	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Cag_1662	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cag_1662	PWYG-321	mycolate biosynthesis
Cag_1663	PWY-4381	fatty acid biosynthesis initiation I
Cag_1663	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Cag_1663	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cag_1664	PWY-4381	fatty acid biosynthesis initiation I
Cag_1668	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cag_1672	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Cag_1672	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Cag_1673	PWY-6871	3-methylbutanol biosynthesis
Cag_1680	PWY-3341	L-proline biosynthesis III
Cag_1680	PWY-4981	L-proline biosynthesis II (from arginine)
Cag_1680	PWY-6344	L-ornithine degradation II (Stickland reaction)
Cag_1685	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Cag_1685	PWY-7118	chitin degradation to ethanol
Cag_1692	PWY-2201	folate transformations I
Cag_1692	PWY-3841	folate transformations II
Cag_1700	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Cag_1700	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Cag_1701	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Cag_1701	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Cag_1701	PWY-5901	2,3-dihydroxybenzoate biosynthesis
Cag_1701	PWY-6406	salicylate biosynthesis I
Cag_1716	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
Cag_1716	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cag_1716	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cag_1718	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Cag_1718	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Cag_1719	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Cag_1719	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Cag_1734	PWY-2941	L-lysine biosynthesis II
Cag_1734	PWY-2942	L-lysine biosynthesis III
Cag_1734	PWY-5097	L-lysine biosynthesis VI
Cag_1747	PWY-5669	phosphatidylethanolamine biosynthesis I
Cag_1759	PWY-6700	queuosine biosynthesis
Cag_1779	PWY-5057	L-valine degradation II
Cag_1779	PWY-5076	L-leucine degradation III
Cag_1779	PWY-5078	L-isoleucine degradation II
Cag_1779	PWY-5101	L-isoleucine biosynthesis II
Cag_1779	PWY-5103	L-isoleucine biosynthesis III
Cag_1779	PWY-5104	L-isoleucine biosynthesis IV
Cag_1779	PWY-5108	L-isoleucine biosynthesis V
Cag_1780	PWY-1042	glycolysis IV (plant cytosol)
Cag_1780	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cag_1780	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cag_1780	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cag_1782	PWY-7560	methylerythritol phosphate pathway II
Cag_1784	PWY-5941	glycogen degradation II (eukaryotic)
Cag_1784	PWY-622	starch biosynthesis
Cag_1784	PWY-6731	starch degradation III
Cag_1784	PWY-6737	starch degradation V
Cag_1784	PWY-7238	sucrose biosynthesis II
Cag_1787	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cag_1787	PWY-5686	UMP biosynthesis
Cag_1787	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cag_1788	PWY-6167	flavin biosynthesis II (archaea)
Cag_1788	PWY-6168	flavin biosynthesis III (fungi)
Cag_1788	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Cag_1789	PWY-1622	formaldehyde assimilation I (serine pathway)
Cag_1789	PWY-181	photorespiration
Cag_1789	PWY-2161	folate polyglutamylation
Cag_1789	PWY-2201	folate transformations I
Cag_1789	PWY-3661	glycine betaine degradation I
Cag_1789	PWY-3661-1	glycine betaine degradation II (mammalian)
Cag_1789	PWY-3841	folate transformations II
Cag_1789	PWY-5497	purine nucleobases degradation II (anaerobic)
Cag_1793	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cag_1793	PWY-6855	chitin degradation I (archaea)
Cag_1793	PWY-6906	chitin derivatives degradation
Cag_1805	PWY-2941	L-lysine biosynthesis II
Cag_1805	PWY-2942	L-lysine biosynthesis III
Cag_1805	PWY-5097	L-lysine biosynthesis VI
Cag_1808	PWY-622	starch biosynthesis
Cag_1813	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cag_1813	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cag_1814	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cag_1814	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cag_1815	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cag_1815	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cag_1816	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cag_1898	PWY-5101	L-isoleucine biosynthesis II
Cag_1898	PWY-6871	3-methylbutanol biosynthesis
Cag_1901	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Cag_1902	PWY-5101	L-isoleucine biosynthesis II
Cag_1902	PWY-5103	L-isoleucine biosynthesis III
Cag_1902	PWY-5104	L-isoleucine biosynthesis IV
Cag_1902	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cag_1903	PWY-5101	L-isoleucine biosynthesis II
Cag_1903	PWY-5103	L-isoleucine biosynthesis III
Cag_1903	PWY-5104	L-isoleucine biosynthesis IV
Cag_1903	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Cag_1903	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Cag_1903	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Cag_1903	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cag_1905	PWY-5101	L-isoleucine biosynthesis II
Cag_1905	PWY-5103	L-isoleucine biosynthesis III
Cag_1905	PWY-5104	L-isoleucine biosynthesis IV
Cag_1905	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Cag_1905	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Cag_1905	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Cag_1905	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cag_1906	PWY-5101	L-isoleucine biosynthesis II
Cag_1906	PWY-5103	L-isoleucine biosynthesis III
Cag_1906	PWY-5104	L-isoleucine biosynthesis IV
Cag_1906	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cag_1921	PWY-5274	sulfide oxidation II (sulfide dehydrogenase)
Cag_1933	PWY-3781	aerobic respiration I (cytochrome c)
Cag_1933	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cag_1933	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cag_1933	PWY-5690	TCA cycle II (plants and fungi)
Cag_1933	PWY-6728	methylaspartate cycle
Cag_1933	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cag_1933	PWY-7254	TCA cycle VII (acetate-producers)
Cag_1933	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cag_1934	PWY-3781	aerobic respiration I (cytochrome c)
Cag_1934	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cag_1934	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cag_1934	PWY-5690	TCA cycle II (plants and fungi)
Cag_1934	PWY-6728	methylaspartate cycle
Cag_1934	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cag_1934	PWY-7254	TCA cycle VII (acetate-producers)
Cag_1934	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cag_1936	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Cag_1936	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Cag_1941	PWY-6823	molybdenum cofactor biosynthesis
Cag_1942	PWY-5194	siroheme biosynthesis
Cag_1942	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cag_1943	PWY-5194	siroheme biosynthesis
Cag_1943	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cag_1955	PWY-6683	sulfate reduction III (assimilatory)
Cag_1956	PWY-6683	sulfate reduction III (assimilatory)
Cag_1968	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cag_1974	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cag_1974	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cag_1983	PWY-2622	trehalose biosynthesis IV
Cag_2004	PWY-5274	sulfide oxidation II (sulfide dehydrogenase)
Cag_2012	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cag_2014	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cag_2023	PWY-2941	L-lysine biosynthesis II
Cag_2023	PWY-2942	L-lysine biosynthesis III
Cag_2023	PWY-5097	L-lysine biosynthesis VI
Cag_2023	PWY-6559	spermidine biosynthesis II
Cag_2023	PWY-6562	norspermidine biosynthesis
Cag_2023	PWY-7153	grixazone biosynthesis
Cag_2024	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cag_2024	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cag_2024	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cag_2026	PWY-5667	CDP-diacylglycerol biosynthesis I
Cag_2026	PWY-5981	CDP-diacylglycerol biosynthesis III
