Cphamn1_0010	PWY-5274	sulfide oxidation II (sulfide dehydrogenase)
Cphamn1_0031	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cphamn1_0033	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cphamn1_0098	PWY-7560	methylerythritol phosphate pathway II
Cphamn1_0101	PWY-5686	UMP biosynthesis
Cphamn1_0102	PWY-6749	CMP-legionaminate biosynthesis I
Cphamn1_0127	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Cphamn1_0127	PWY-7177	UTP and CTP dephosphorylation II
Cphamn1_0127	PWY-7185	UTP and CTP dephosphorylation I
Cphamn1_0173	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
Cphamn1_0173	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cphamn1_0173	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cphamn1_0180	PWY-5367	petroselinate biosynthesis
Cphamn1_0180	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Cphamn1_0180	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Cphamn1_0180	PWY-5989	stearate biosynthesis II (bacteria and plants)
Cphamn1_0180	PWY-5994	palmitate biosynthesis I (animals and fungi)
Cphamn1_0180	PWY-6113	superpathway of mycolate biosynthesis
Cphamn1_0180	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Cphamn1_0180	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cphamn1_0180	PWY-6951	Cphamn1_0180|Cphamn1_0180|YP_001958635.1|GeneID:6373834
Cphamn1_0180	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Cphamn1_0180	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cphamn1_0180	PWYG-321	mycolate biosynthesis
Cphamn1_0181	PWY-4381	fatty acid biosynthesis initiation I
Cphamn1_0181	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Cphamn1_0181	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cphamn1_0182	PWY-4381	fatty acid biosynthesis initiation I
Cphamn1_0193	PWY-6871	3-methylbutanol biosynthesis
Cphamn1_0202	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cphamn1_0240	PWY-2622	trehalose biosynthesis IV
Cphamn1_0250	PWY-6012	acyl carrier protein metabolism I
Cphamn1_0250	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Cphamn1_0275	PWY-6825	phosphatidylcholine biosynthesis V
Cphamn1_0284	PWY-3781	aerobic respiration I (cytochrome c)
Cphamn1_0284	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cphamn1_0284	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cphamn1_0284	PWY-5690	TCA cycle II (plants and fungi)
Cphamn1_0284	PWY-6728	methylaspartate cycle
Cphamn1_0284	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cphamn1_0284	PWY-7254	TCA cycle VII (acetate-producers)
Cphamn1_0284	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cphamn1_0285	PWY-3781	aerobic respiration I (cytochrome c)
Cphamn1_0285	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cphamn1_0285	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cphamn1_0285	PWY-5690	TCA cycle II (plants and fungi)
Cphamn1_0285	PWY-6728	methylaspartate cycle
Cphamn1_0285	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cphamn1_0285	PWY-7254	TCA cycle VII (acetate-producers)
Cphamn1_0285	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cphamn1_0287	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cphamn1_0287	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cphamn1_0290	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
Cphamn1_0291	PWY-6167	flavin biosynthesis II (archaea)
Cphamn1_0291	PWY-6168	flavin biosynthesis III (fungi)
Cphamn1_0294	PWY-5667	CDP-diacylglycerol biosynthesis I
Cphamn1_0294	PWY-5981	CDP-diacylglycerol biosynthesis III
Cphamn1_0294	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
Cphamn1_0294	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Cphamn1_0296	PWY-702	L-methionine biosynthesis II
Cphamn1_0297	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cphamn1_0299	PWY-2941	L-lysine biosynthesis II
Cphamn1_0299	PWY-2942	L-lysine biosynthesis III
Cphamn1_0299	PWY-5097	L-lysine biosynthesis VI
Cphamn1_0299	PWY-6559	spermidine biosynthesis II
Cphamn1_0299	PWY-6562	norspermidine biosynthesis
Cphamn1_0299	PWY-7153	grixazone biosynthesis
Cphamn1_0304	PWY-2941	L-lysine biosynthesis II
Cphamn1_0304	PWY-5097	L-lysine biosynthesis VI
Cphamn1_0305	PWY-101	photosynthesis light reactions
Cphamn1_0305	PWY-6785	hydrogen production VIII
Cphamn1_0309	PWY-1042	glycolysis IV (plant cytosol)
Cphamn1_0309	PWY-1622	formaldehyde assimilation I (serine pathway)
Cphamn1_0309	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cphamn1_0309	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphamn1_0309	PWY-5723	Rubisco shunt
Cphamn1_0309	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cphamn1_0309	PWY-6886	1-butanol autotrophic biosynthesis
Cphamn1_0309	PWY-6901	superpathway of glucose and xylose degradation
Cphamn1_0309	PWY-7003	glycerol degradation to butanol
Cphamn1_0309	PWY-7124	ethylene biosynthesis V (engineered)
Cphamn1_0309	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Cphamn1_0311	PWY-7560	methylerythritol phosphate pathway II
Cphamn1_0325	PWY-4381	fatty acid biosynthesis initiation I
Cphamn1_0325	PWY-5743	3-hydroxypropanoate cycle
Cphamn1_0325	PWY-5744	glyoxylate assimilation
Cphamn1_0325	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cphamn1_0325	PWY-6679	jadomycin biosynthesis
Cphamn1_0325	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cphamn1_0342	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cphamn1_0358	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Cphamn1_0358	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Cphamn1_0358	PWY-6896	thiamin salvage I
Cphamn1_0358	PWY-6897	thiamin salvage II
Cphamn1_0405	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Cphamn1_0405	PWY-6167	flavin biosynthesis II (archaea)
Cphamn1_0405	PWY-6168	flavin biosynthesis III (fungi)
Cphamn1_0408	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cphamn1_0410	PWY-5386	methylglyoxal degradation I
Cphamn1_0412	PWY-5155	&beta;-alanine biosynthesis III
Cphamn1_0417	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
Cphamn1_0417	PWY-6174	mevalonate pathway II (archaea)
Cphamn1_0417	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
Cphamn1_0417	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
Cphamn1_0417	PWY-7102	bisabolene biosynthesis
Cphamn1_0417	PWY-7391	isoprene biosynthesis II (engineered)
Cphamn1_0417	PWY-7524	mevalonate pathway III (archaea)
Cphamn1_0417	PWY-7560	methylerythritol phosphate pathway II
Cphamn1_0417	PWY-922	mevalonate pathway I
Cphamn1_0420	PWY-6749	CMP-legionaminate biosynthesis I
Cphamn1_0423	PWY-2161	folate polyglutamylation
Cphamn1_0424	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cphamn1_0436	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Cphamn1_0437	PWY-5392	reductive TCA cycle II
Cphamn1_0437	PWY-5537	pyruvate fermentation to acetate V
Cphamn1_0437	PWY-5538	pyruvate fermentation to acetate VI
Cphamn1_0437	PWY-5690	TCA cycle II (plants and fungi)
Cphamn1_0437	PWY-5913	TCA cycle VI (obligate autotrophs)
Cphamn1_0437	PWY-6728	methylaspartate cycle
Cphamn1_0437	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cphamn1_0437	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cphamn1_0447	PWY-6749	CMP-legionaminate biosynthesis I
Cphamn1_0456	PWY-7560	methylerythritol phosphate pathway II
Cphamn1_0465	PWY-5839	menaquinol-7 biosynthesis
Cphamn1_0465	PWY-5844	menaquinol-9 biosynthesis
Cphamn1_0465	PWY-5849	menaquinol-6 biosynthesis
Cphamn1_0465	PWY-5890	menaquinol-10 biosynthesis
Cphamn1_0465	PWY-5891	menaquinol-11 biosynthesis
Cphamn1_0465	PWY-5892	menaquinol-12 biosynthesis
Cphamn1_0465	PWY-5895	menaquinol-13 biosynthesis
Cphamn1_0490	PWY-5958	acridone alkaloid biosynthesis
Cphamn1_0490	PWY-6543	4-aminobenzoate biosynthesis
Cphamn1_0490	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Cphamn1_0490	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Cphamn1_0490	PWY-6722	candicidin biosynthesis
Cphamn1_0499	PWY-6614	tetrahydrofolate biosynthesis
Cphamn1_0512	PWY-5491	diethylphosphate degradation
Cphamn1_0523	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Cphamn1_0523	PWY-6549	L-glutamine biosynthesis III
Cphamn1_0523	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cphamn1_0523	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Cphamn1_0528	PWY-6825	phosphatidylcholine biosynthesis V
Cphamn1_0532	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cphamn1_0532	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cphamn1_0532	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cphamn1_0534	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cphamn1_0534	PWY-5686	UMP biosynthesis
Cphamn1_0534	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cphamn1_0536	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cphamn1_0536	PWY-5723	Rubisco shunt
Cphamn1_0541	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Cphamn1_0544	PWY-5269	cardiolipin biosynthesis II
Cphamn1_0544	PWY-5668	cardiolipin biosynthesis I
Cphamn1_0545	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Cphamn1_0545	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Cphamn1_0545	PWY-5989	stearate biosynthesis II (bacteria and plants)
Cphamn1_0545	PWY-5994	palmitate biosynthesis I (animals and fungi)
Cphamn1_0545	PWY-6113	superpathway of mycolate biosynthesis
Cphamn1_0545	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Cphamn1_0545	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cphamn1_0545	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cphamn1_0545	PWYG-321	mycolate biosynthesis
Cphamn1_0546	PWY-2301	<i>myo</i>-inositol biosynthesis
Cphamn1_0546	PWY-4702	phytate degradation I
Cphamn1_0546	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
Cphamn1_0550	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Cphamn1_0550	PWY-7118	chitin degradation to ethanol
Cphamn1_0577	PWY-1622	formaldehyde assimilation I (serine pathway)
Cphamn1_0577	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Cphamn1_0577	PWY-5913	TCA cycle VI (obligate autotrophs)
Cphamn1_0577	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cphamn1_0577	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Cphamn1_0577	PWY-6549	L-glutamine biosynthesis III
Cphamn1_0577	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cphamn1_0577	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Cphamn1_0577	PWY-7124	ethylene biosynthesis V (engineered)
Cphamn1_0579	PWY-6700	queuosine biosynthesis
Cphamn1_0593	PWY-2941	L-lysine biosynthesis II
Cphamn1_0593	PWY-2942	L-lysine biosynthesis III
Cphamn1_0593	PWY-5097	L-lysine biosynthesis VI
Cphamn1_0597	PWY-5669	phosphatidylethanolamine biosynthesis I
Cphamn1_0607	PWY-5057	L-valine degradation II
Cphamn1_0607	PWY-5076	L-leucine degradation III
Cphamn1_0607	PWY-5078	L-isoleucine degradation II
Cphamn1_0607	PWY-5101	L-isoleucine biosynthesis II
Cphamn1_0607	PWY-5103	L-isoleucine biosynthesis III
Cphamn1_0607	PWY-5104	L-isoleucine biosynthesis IV
Cphamn1_0607	PWY-5108	L-isoleucine biosynthesis V
Cphamn1_0608	PWY-1042	glycolysis IV (plant cytosol)
Cphamn1_0608	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cphamn1_0608	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphamn1_0608	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cphamn1_0610	PWY-7560	methylerythritol phosphate pathway II
Cphamn1_0615	PWY-5941	glycogen degradation II (eukaryotic)
Cphamn1_0615	PWY-622	starch biosynthesis
Cphamn1_0615	PWY-6731	starch degradation III
Cphamn1_0615	PWY-6737	starch degradation V
Cphamn1_0615	PWY-7238	sucrose biosynthesis II
Cphamn1_0628	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cphamn1_0628	PWY-5686	UMP biosynthesis
Cphamn1_0628	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cphamn1_0629	PWY-6167	flavin biosynthesis II (archaea)
Cphamn1_0629	PWY-6168	flavin biosynthesis III (fungi)
Cphamn1_0629	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Cphamn1_0630	PWY-1622	formaldehyde assimilation I (serine pathway)
Cphamn1_0630	PWY-181	photorespiration
Cphamn1_0630	PWY-2161	folate polyglutamylation
Cphamn1_0630	PWY-2201	folate transformations I
Cphamn1_0630	PWY-3661	glycine betaine degradation I
Cphamn1_0630	PWY-3661-1	glycine betaine degradation II (mammalian)
Cphamn1_0630	PWY-3841	folate transformations II
Cphamn1_0630	PWY-5497	purine nucleobases degradation II (anaerobic)
Cphamn1_0642	PWY-6936	seleno-amino acid biosynthesis
Cphamn1_0657	PWY-6123	inosine-5'-phosphate biosynthesis I
Cphamn1_0657	PWY-7234	inosine-5'-phosphate biosynthesis III
Cphamn1_0667	PWY-5392	reductive TCA cycle II
Cphamn1_0667	PWY-5537	pyruvate fermentation to acetate V
Cphamn1_0667	PWY-5538	pyruvate fermentation to acetate VI
Cphamn1_0667	PWY-5690	TCA cycle II (plants and fungi)
Cphamn1_0667	PWY-5913	TCA cycle VI (obligate autotrophs)
Cphamn1_0667	PWY-6728	methylaspartate cycle
Cphamn1_0667	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cphamn1_0667	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cphamn1_0670	PWY-723	alkylnitronates degradation
Cphamn1_0671	PWY-1622	formaldehyde assimilation I (serine pathway)
Cphamn1_0671	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphamn1_0730	PWY-6825	phosphatidylcholine biosynthesis V
Cphamn1_0759	PWY-4202	arsenate detoxification I (glutaredoxin)
Cphamn1_0784	PWY-6703	preQ<sub>0</sub> biosynthesis
Cphamn1_0793	PWY-7158	L-phenylalanine degradation V
Cphamn1_0798	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Cphamn1_0798	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Cphamn1_0798	PWY-5989	stearate biosynthesis II (bacteria and plants)
Cphamn1_0798	PWY-6113	superpathway of mycolate biosynthesis
Cphamn1_0798	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Cphamn1_0798	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cphamn1_0798	PWY-7096	triclosan resistance
Cphamn1_0798	PWYG-321	mycolate biosynthesis
Cphamn1_0799	PWY-5913	TCA cycle VI (obligate autotrophs)
Cphamn1_0799	PWY-6549	L-glutamine biosynthesis III
Cphamn1_0799	PWY-6728	methylaspartate cycle
Cphamn1_0799	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cphamn1_0799	PWY-7124	ethylene biosynthesis V (engineered)
Cphamn1_0799	PWY-7254	TCA cycle VII (acetate-producers)
Cphamn1_0799	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cphamn1_0800	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cphamn1_0800	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cphamn1_0800	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cphamn1_0800	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cphamn1_0800	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphamn1_0800	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphamn1_0800	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cphamn1_0800	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Cphamn1_0819	PWY-5344	L-homocysteine biosynthesis
Cphamn1_0819	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Cphamn1_0820	PWY-5344	L-homocysteine biosynthesis
Cphamn1_0825	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Cphamn1_0832	PWY-1622	formaldehyde assimilation I (serine pathway)
Cphamn1_0832	PWY-5392	reductive TCA cycle II
Cphamn1_0832	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cphamn1_0832	PWY-5690	TCA cycle II (plants and fungi)
Cphamn1_0832	PWY-5913	TCA cycle VI (obligate autotrophs)
Cphamn1_0832	PWY-6728	methylaspartate cycle
Cphamn1_0832	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cphamn1_0832	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cphamn1_0832	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cphamn1_0845	PWY-7560	methylerythritol phosphate pathway II
Cphamn1_0855	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cphamn1_0855	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cphamn1_0857	PWY-1042	glycolysis IV (plant cytosol)
Cphamn1_0857	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphamn1_0857	PWY-6901	superpathway of glucose and xylose degradation
Cphamn1_0857	PWY-7003	glycerol degradation to butanol
Cphamn1_0904	PWY-5958	acridone alkaloid biosynthesis
Cphamn1_0904	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Cphamn1_0904	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Cphamn1_0908	PWY-1042	glycolysis IV (plant cytosol)
Cphamn1_0908	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphamn1_0908	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cphamn1_0908	PWY-7003	glycerol degradation to butanol
Cphamn1_0909	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Cphamn1_0921	PWY-6936	seleno-amino acid biosynthesis
Cphamn1_0921	PWY-7274	D-cycloserine biosynthesis
Cphamn1_0922	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cphamn1_0923	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cphamn1_0923	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cphamn1_0932	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cphamn1_0932	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cphamn1_0933	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cphamn1_0933	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cphamn1_0934	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cphamn1_0937	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
Cphamn1_0943	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cphamn1_0943	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cphamn1_0943	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphamn1_0943	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Cphamn1_0953	PWY-381	nitrate reduction II (assimilatory)
Cphamn1_0953	PWY-5675	nitrate reduction V (assimilatory)
Cphamn1_0953	PWY-6549	L-glutamine biosynthesis III
Cphamn1_0953	PWY-6963	ammonia assimilation cycle I
Cphamn1_0953	PWY-6964	ammonia assimilation cycle II
Cphamn1_0958	PWY-3961	phosphopantothenate biosynthesis II
Cphamn1_0959	PWY-6164	3-dehydroquinate biosynthesis I
Cphamn1_0960	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cphamn1_0962	PWY-4261	glycerol degradation I
Cphamn1_0964	PWY-6700	queuosine biosynthesis
Cphamn1_0976	PWY-2941	L-lysine biosynthesis II
Cphamn1_0976	PWY-2942	L-lysine biosynthesis III
Cphamn1_0976	PWY-5097	L-lysine biosynthesis VI
Cphamn1_0977	PWY-2201	folate transformations I
Cphamn1_0977	PWY-3841	folate transformations II
Cphamn1_1004	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphamn1_1004	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphamn1_1007	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Cphamn1_1007	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Cphamn1_1008	PWY-6654	phosphopantothenate biosynthesis III
Cphamn1_1009	PWY-5669	phosphatidylethanolamine biosynthesis I
Cphamn1_1010	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cphamn1_1010	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cphamn1_1010	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cphamn1_1011	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cphamn1_1011	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cphamn1_1011	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cphamn1_1025	PWY-7560	methylerythritol phosphate pathway II
Cphamn1_1026	PWY-6700	queuosine biosynthesis
Cphamn1_1029	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cphamn1_1029	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cphamn1_1029	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphamn1_1029	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Cphamn1_1029	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cphamn1_1029	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cphamn1_1045	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Cphamn1_1045	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Cphamn1_1046	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cphamn1_1046	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cphamn1_1047	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cphamn1_1047	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cphamn1_1048	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cphamn1_1048	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cphamn1_1049	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Cphamn1_1049	PWY-6596	adenosine nucleotides degradation I
Cphamn1_1049	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cphamn1_1105	PWY-6123	inosine-5'-phosphate biosynthesis I
Cphamn1_1105	PWY-6124	inosine-5'-phosphate biosynthesis II
Cphamn1_1105	PWY-7234	inosine-5'-phosphate biosynthesis III
Cphamn1_1107	PWY-6891	thiazole biosynthesis II (Bacillus)
Cphamn1_1107	PWY-6892	thiazole biosynthesis I (E. coli)
Cphamn1_1107	PWY-7560	methylerythritol phosphate pathway II
Cphamn1_1118	PWY-2781	<i>cis</i>-zeatin biosynthesis
Cphamn1_1126	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cphamn1_1126	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cphamn1_1126	PWY-6164	3-dehydroquinate biosynthesis I
Cphamn1_1140	PWY-3801	sucrose degradation II (sucrose synthase)
Cphamn1_1140	PWY-5054	sorbitol biosynthesis I
Cphamn1_1140	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Cphamn1_1140	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cphamn1_1140	PWY-5659	GDP-mannose biosynthesis
Cphamn1_1140	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cphamn1_1140	PWY-621	sucrose degradation III (sucrose invertase)
Cphamn1_1140	PWY-622	starch biosynthesis
Cphamn1_1140	PWY-6531	mannitol cycle
Cphamn1_1140	PWY-6981	chitin biosynthesis
Cphamn1_1140	PWY-7238	sucrose biosynthesis II
Cphamn1_1140	PWY-7347	sucrose biosynthesis III
Cphamn1_1140	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cphamn1_1173	PWY-5743	3-hydroxypropanoate cycle
Cphamn1_1173	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cphamn1_1173	PWY-6728	methylaspartate cycle
Cphamn1_1173	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cphamn1_1174	PWY-4381	fatty acid biosynthesis initiation I
Cphamn1_1174	PWY-5743	3-hydroxypropanoate cycle
Cphamn1_1174	PWY-5744	glyoxylate assimilation
Cphamn1_1174	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cphamn1_1174	PWY-6679	jadomycin biosynthesis
Cphamn1_1174	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cphamn1_1175	PWY-5743	3-hydroxypropanoate cycle
Cphamn1_1175	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cphamn1_1175	PWY-6728	methylaspartate cycle
Cphamn1_1175	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cphamn1_1178	PWY-6891	thiazole biosynthesis II (Bacillus)
Cphamn1_1178	PWY-6892	thiazole biosynthesis I (E. coli)
Cphamn1_1178	PWY-7560	methylerythritol phosphate pathway II
Cphamn1_1187	PWY-2723	trehalose degradation V
Cphamn1_1187	PWY-3801	sucrose degradation II (sucrose synthase)
Cphamn1_1187	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Cphamn1_1187	PWY-5661	GDP-glucose biosynthesis
Cphamn1_1187	PWY-5661-1	Cphamn1_1187|Cphamn1_1187|YP_001959602.1|GeneID:6374864
Cphamn1_1187	PWY-5940	streptomycin biosynthesis
Cphamn1_1187	PWY-5941	glycogen degradation II (eukaryotic)
Cphamn1_1187	PWY-622	starch biosynthesis
Cphamn1_1187	PWY-6731	starch degradation III
Cphamn1_1187	PWY-6737	starch degradation V
Cphamn1_1187	PWY-6749	CMP-legionaminate biosynthesis I
Cphamn1_1187	PWY-7238	sucrose biosynthesis II
Cphamn1_1187	PWY-7343	UDP-glucose biosynthesis
Cphamn1_1189	PWY-5392	reductive TCA cycle II
Cphamn1_1189	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cphamn1_1189	PWY-5690	TCA cycle II (plants and fungi)
Cphamn1_1189	PWY-5913	TCA cycle VI (obligate autotrophs)
Cphamn1_1189	PWY-6728	methylaspartate cycle
Cphamn1_1189	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cphamn1_1189	PWY-7254	TCA cycle VII (acetate-producers)
Cphamn1_1189	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cphamn1_1191	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphamn1_1191	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphamn1_1191	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphamn1_1193	PWY-5381	pyridine nucleotide cycling (plants)
Cphamn1_1194	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cphamn1_1194	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cphamn1_1199	PWY-6339	syringate degradation
Cphamn1_1201	PWY-6339	syringate degradation
Cphamn1_1263	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphamn1_1263	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphamn1_1269	PWY-5669	phosphatidylethanolamine biosynthesis I
Cphamn1_1272	PWY-6938	NADH repair
Cphamn1_1273	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cphamn1_1273	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cphamn1_1273	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cphamn1_1280	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Cphamn1_1281	PWY-6910	hydroxymethylpyrimidine salvage
Cphamn1_1281	PWY-7356	thiamin salvage IV (yeast)
Cphamn1_1281	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cphamn1_1282	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Cphamn1_1282	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Cphamn1_1282	PWY-6897	thiamin salvage II
Cphamn1_1282	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Cphamn1_1282	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Cphamn1_1282	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Cphamn1_1282	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cphamn1_1283	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Cphamn1_1283	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Cphamn1_1283	PWY-6897	thiamin salvage II
Cphamn1_1283	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Cphamn1_1283	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Cphamn1_1283	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Cphamn1_1283	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cphamn1_1294	PWY-6829	tRNA methylation (yeast)
Cphamn1_1294	PWY-7285	methylwyosine biosynthesis
Cphamn1_1294	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Cphamn1_1308	PWY-5350	thiosulfate disproportionation III (rhodanese)
Cphamn1_1317	PWY-5686	UMP biosynthesis
Cphamn1_1325	PWY-1042	glycolysis IV (plant cytosol)
Cphamn1_1325	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cphamn1_1325	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphamn1_1325	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cphamn1_1325	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cphamn1_1327	PWY-4983	L-citrulline-nitric oxide cycle
Cphamn1_1327	PWY-4984	urea cycle
Cphamn1_1327	PWY-5	canavanine biosynthesis
Cphamn1_1327	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cphamn1_1327	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cphamn1_1332	PWY-4983	L-citrulline-nitric oxide cycle
Cphamn1_1332	PWY-4984	urea cycle
Cphamn1_1332	PWY-5	canavanine biosynthesis
Cphamn1_1332	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cphamn1_1332	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cphamn1_1334	PWY-4981	L-proline biosynthesis II (from arginine)
Cphamn1_1334	PWY-4984	urea cycle
Cphamn1_1334	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cphamn1_1335	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cphamn1_1335	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cphamn1_1336	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cphamn1_1337	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cphamn1_1337	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cphamn1_1350	PWY-5392	reductive TCA cycle II
Cphamn1_1350	PWY-5537	pyruvate fermentation to acetate V
Cphamn1_1350	PWY-5538	pyruvate fermentation to acetate VI
Cphamn1_1350	PWY-5690	TCA cycle II (plants and fungi)
Cphamn1_1350	PWY-5913	TCA cycle VI (obligate autotrophs)
Cphamn1_1350	PWY-6728	methylaspartate cycle
Cphamn1_1350	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cphamn1_1350	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cphamn1_1351	PWY-5392	reductive TCA cycle II
Cphamn1_1351	PWY-5537	pyruvate fermentation to acetate V
Cphamn1_1351	PWY-5538	pyruvate fermentation to acetate VI
Cphamn1_1351	PWY-5690	TCA cycle II (plants and fungi)
Cphamn1_1351	PWY-5913	TCA cycle VI (obligate autotrophs)
Cphamn1_1351	PWY-6728	methylaspartate cycle
Cphamn1_1351	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cphamn1_1351	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cphamn1_1357	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Cphamn1_1369	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Cphamn1_1369	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cphamn1_1369	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cphamn1_1369	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Cphamn1_1370	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Cphamn1_1370	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Cphamn1_1370	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Cphamn1_1408	PWY-4061	glutathione-mediated detoxification I
Cphamn1_1408	PWY-6842	glutathione-mediated detoxification II
Cphamn1_1408	PWY-7112	4-hydroxy-2-nonenal detoxification
Cphamn1_1429	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cphamn1_1436	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cphamn1_1436	PWY-6416	quinate degradation II
Cphamn1_1436	PWY-6707	gallate biosynthesis
Cphamn1_1442	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Cphamn1_1442	PWY-2201	folate transformations I
Cphamn1_1442	PWY-3841	folate transformations II
Cphamn1_1442	PWY-5030	L-histidine degradation III
Cphamn1_1442	PWY-5497	purine nucleobases degradation II (anaerobic)
Cphamn1_1442	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Cphamn1_1462	PWY-6854	ethylene biosynthesis III (microbes)
Cphamn1_1481	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Cphamn1_1481	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Cphamn1_1490	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cphamn1_1490	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cphamn1_1490	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cphamn1_1492	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cphamn1_1492	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cphamn1_1492	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cphamn1_1493	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cphamn1_1493	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cphamn1_1493	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cphamn1_1511	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cphamn1_1511	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cphamn1_1511	PWY-6268	adenosylcobalamin salvage from cobalamin
Cphamn1_1511	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cphamn1_1515	PWY-5443	aminopropanol phosphate biosynthesis I
Cphamn1_1517	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cphamn1_1517	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Cphamn1_1526	PWY-6123	inosine-5'-phosphate biosynthesis I
Cphamn1_1526	PWY-6124	inosine-5'-phosphate biosynthesis II
Cphamn1_1526	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cphamn1_1526	PWY-7234	inosine-5'-phosphate biosynthesis III
Cphamn1_1536	PWY-4702	phytate degradation I
Cphamn1_1551	PWY-5669	phosphatidylethanolamine biosynthesis I
Cphamn1_1556	PWY-6891	thiazole biosynthesis II (Bacillus)
Cphamn1_1556	PWY-6892	thiazole biosynthesis I (E. coli)
Cphamn1_1557	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Cphamn1_1585	PWY-3781	aerobic respiration I (cytochrome c)
Cphamn1_1585	PWY-4521	arsenite oxidation I (respiratory)
Cphamn1_1585	PWY-6692	Fe(II) oxidation
Cphamn1_1585	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cphamn1_1586	PWY-3781	aerobic respiration I (cytochrome c)
Cphamn1_1586	PWY-4521	arsenite oxidation I (respiratory)
Cphamn1_1586	PWY-6692	Fe(II) oxidation
Cphamn1_1586	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cphamn1_1588	PWY-5663	tetrahydrobiopterin biosynthesis I
Cphamn1_1588	PWY-5664	tetrahydrobiopterin biosynthesis II
Cphamn1_1588	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cphamn1_1588	PWY-6703	preQ<sub>0</sub> biosynthesis
Cphamn1_1588	PWY-6983	tetrahydrobiopterin biosynthesis III
Cphamn1_1588	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Cphamn1_1619	PWY-6167	flavin biosynthesis II (archaea)
Cphamn1_1619	PWY-6168	flavin biosynthesis III (fungi)
Cphamn1_1619	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cphamn1_1624	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cphamn1_1640	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Cphamn1_1640	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Cphamn1_1641	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Cphamn1_1699	PWY-3781	aerobic respiration I (cytochrome c)
Cphamn1_1699	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cphamn1_1699	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cphamn1_1699	PWY-5690	TCA cycle II (plants and fungi)
Cphamn1_1699	PWY-6728	methylaspartate cycle
Cphamn1_1699	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cphamn1_1699	PWY-7254	TCA cycle VII (acetate-producers)
Cphamn1_1699	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cphamn1_1716	PWY-5101	L-isoleucine biosynthesis II
Cphamn1_1716	PWY-5103	L-isoleucine biosynthesis III
Cphamn1_1716	PWY-5104	L-isoleucine biosynthesis IV
Cphamn1_1716	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cphamn1_1717	PWY-5101	L-isoleucine biosynthesis II
Cphamn1_1717	PWY-5103	L-isoleucine biosynthesis III
Cphamn1_1717	PWY-5104	L-isoleucine biosynthesis IV
Cphamn1_1717	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Cphamn1_1717	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Cphamn1_1717	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Cphamn1_1717	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cphamn1_1718	PWY-5101	L-isoleucine biosynthesis II
Cphamn1_1718	PWY-5103	L-isoleucine biosynthesis III
Cphamn1_1718	PWY-5104	L-isoleucine biosynthesis IV
Cphamn1_1718	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Cphamn1_1718	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Cphamn1_1718	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Cphamn1_1718	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cphamn1_1719	PWY-5101	L-isoleucine biosynthesis II
Cphamn1_1719	PWY-5103	L-isoleucine biosynthesis III
Cphamn1_1719	PWY-5104	L-isoleucine biosynthesis IV
Cphamn1_1719	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cphamn1_1720	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Cphamn1_1721	PWY-6871	3-methylbutanol biosynthesis
Cphamn1_1724	PWY-5101	L-isoleucine biosynthesis II
Cphamn1_1724	PWY-6871	3-methylbutanol biosynthesis
Cphamn1_1727	PWY-43	putrescine biosynthesis II
Cphamn1_1732	PWY-5839	menaquinol-7 biosynthesis
Cphamn1_1732	PWY-5851	demethylmenaquinol-9 biosynthesis
Cphamn1_1732	PWY-5852	demethylmenaquinol-8 biosynthesis I
Cphamn1_1732	PWY-5853	demethylmenaquinol-6 biosynthesis I
Cphamn1_1732	PWY-5890	menaquinol-10 biosynthesis
Cphamn1_1732	PWY-5891	menaquinol-11 biosynthesis
Cphamn1_1732	PWY-5892	menaquinol-12 biosynthesis
Cphamn1_1732	PWY-5895	menaquinol-13 biosynthesis
Cphamn1_1733	PWY-101	photosynthesis light reactions
Cphamn1_1733	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Cphamn1_1745	PWY-6610	adenine and adenosine salvage IV
Cphamn1_1746	PWY-6599	guanine and guanosine salvage II
Cphamn1_1746	PWY-6609	adenine and adenosine salvage III
Cphamn1_1746	PWY-6610	adenine and adenosine salvage IV
Cphamn1_1746	PWY-6620	guanine and guanosine salvage
Cphamn1_1747	PWY-6871	3-methylbutanol biosynthesis
Cphamn1_1758	PWY-6823	molybdenum cofactor biosynthesis
Cphamn1_1767	PWY-5686	UMP biosynthesis
Cphamn1_1774	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cphamn1_1779	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cphamn1_1782	PWY-4202	arsenate detoxification I (glutaredoxin)
Cphamn1_1782	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Cphamn1_1782	PWY-6608	guanosine nucleotides degradation III
Cphamn1_1782	PWY-6609	adenine and adenosine salvage III
Cphamn1_1782	PWY-6611	adenine and adenosine salvage V
Cphamn1_1782	PWY-6620	guanine and guanosine salvage
Cphamn1_1782	PWY-6627	salinosporamide A biosynthesis
Cphamn1_1782	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Cphamn1_1782	PWY-7179	purine deoxyribonucleosides degradation I
Cphamn1_1782	PWY-7179-1	purine deoxyribonucleosides degradation
Cphamn1_1783	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
Cphamn1_1783	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Cphamn1_1789	PWY-2201	folate transformations I
Cphamn1_1789	PWY-5497	purine nucleobases degradation II (anaerobic)
Cphamn1_1796	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphamn1_1800	PWY-5316	nicotine biosynthesis
Cphamn1_1800	PWY-7342	superpathway of nicotine biosynthesis
Cphamn1_1806	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphamn1_1806	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphamn1_1809	PWY-40	putrescine biosynthesis I
Cphamn1_1809	PWY-43	putrescine biosynthesis II
Cphamn1_1809	PWY-6305	putrescine biosynthesis IV
Cphamn1_1809	PWY-6834	spermidine biosynthesis III
Cphamn1_1812	PWY-5316	nicotine biosynthesis
Cphamn1_1812	PWY-7342	superpathway of nicotine biosynthesis
Cphamn1_1815	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphamn1_1815	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphamn1_1817	PWY-5747	2-methylcitrate cycle II
Cphamn1_1818	PWY-6700	queuosine biosynthesis
Cphamn1_1822	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Cphamn1_1822	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Cphamn1_1826	PWY-6891	thiazole biosynthesis II (Bacillus)
Cphamn1_1826	PWY-6892	thiazole biosynthesis I (E. coli)
Cphamn1_1826	PWY-7560	methylerythritol phosphate pathway II
Cphamn1_1827	PWY-5269	cardiolipin biosynthesis II
Cphamn1_1827	PWY-5668	cardiolipin biosynthesis I
Cphamn1_1828	PWY-5269	cardiolipin biosynthesis II
Cphamn1_1828	PWY-5668	cardiolipin biosynthesis I
Cphamn1_1839	PWY-5278	sulfite oxidation III
Cphamn1_1839	PWY-5340	sulfate activation for sulfonation
Cphamn1_1839	PWY-6683	sulfate reduction III (assimilatory)
Cphamn1_1839	PWY-6932	selenate reduction
Cphamn1_1843	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cphamn1_1843	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cphamn1_1843	PWY-5194	siroheme biosynthesis
Cphamn1_1843	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cphamn1_1844	PWY-5194	siroheme biosynthesis
Cphamn1_1844	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cphamn1_1856	PWY-6683	sulfate reduction III (assimilatory)
Cphamn1_1857	PWY-6683	sulfate reduction III (assimilatory)
Cphamn1_1868	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Cphamn1_1877	PWY-6123	inosine-5'-phosphate biosynthesis I
Cphamn1_1877	PWY-6124	inosine-5'-phosphate biosynthesis II
Cphamn1_1877	PWY-7234	inosine-5'-phosphate biosynthesis III
Cphamn1_1878	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cphamn1_1878	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Cphamn1_1879	PWY-6703	preQ<sub>0</sub> biosynthesis
Cphamn1_1885	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cphamn1_1885	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cphamn1_1885	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cphamn1_1885	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cphamn1_1889	PWY-3221	dTDP-L-rhamnose biosynthesis II
Cphamn1_1889	PWY-6808	dTDP-D-forosamine biosynthesis
Cphamn1_1889	PWY-6942	dTDP-D-desosamine biosynthesis
Cphamn1_1889	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Cphamn1_1889	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Cphamn1_1889	PWY-6974	dTDP-L-olivose biosynthesis
Cphamn1_1889	PWY-6976	dTDP-L-mycarose biosynthesis
Cphamn1_1889	PWY-7104	dTDP-L-megosamine biosynthesis
Cphamn1_1889	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Cphamn1_1889	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Cphamn1_1889	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Cphamn1_1889	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Cphamn1_1889	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Cphamn1_1889	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Cphamn1_1889	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Cphamn1_1889	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Cphamn1_1894	PWY-3221	dTDP-L-rhamnose biosynthesis II
Cphamn1_1894	PWY-6808	dTDP-D-forosamine biosynthesis
Cphamn1_1894	PWY-6942	dTDP-D-desosamine biosynthesis
Cphamn1_1894	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Cphamn1_1894	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Cphamn1_1894	PWY-6974	dTDP-L-olivose biosynthesis
Cphamn1_1894	PWY-6976	dTDP-L-mycarose biosynthesis
Cphamn1_1894	PWY-7104	dTDP-L-megosamine biosynthesis
Cphamn1_1894	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Cphamn1_1894	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Cphamn1_1894	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Cphamn1_1894	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Cphamn1_1894	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Cphamn1_1894	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Cphamn1_1894	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Cphamn1_1894	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Cphamn1_1899	PWY-6749	CMP-legionaminate biosynthesis I
Cphamn1_1900	PWY-5659	GDP-mannose biosynthesis
Cphamn1_1900	PWY-6073	alginate biosynthesis I (algal)
Cphamn1_1900	PWY-6082	alginate biosynthesis II (bacterial)
Cphamn1_1900	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Cphamn1_1902	PWY-6749	CMP-legionaminate biosynthesis I
Cphamn1_1909	PWY-5340	sulfate activation for sulfonation
Cphamn1_1911	PWY-3221	dTDP-L-rhamnose biosynthesis II
Cphamn1_1911	PWY-6808	dTDP-D-forosamine biosynthesis
Cphamn1_1911	PWY-6942	dTDP-D-desosamine biosynthesis
Cphamn1_1911	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Cphamn1_1911	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Cphamn1_1911	PWY-6974	dTDP-L-olivose biosynthesis
Cphamn1_1911	PWY-6976	dTDP-L-mycarose biosynthesis
Cphamn1_1911	PWY-7104	dTDP-L-megosamine biosynthesis
Cphamn1_1911	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Cphamn1_1911	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Cphamn1_1911	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Cphamn1_1911	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Cphamn1_1911	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Cphamn1_1911	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Cphamn1_1911	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Cphamn1_1911	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Cphamn1_1914	PWY-3221	dTDP-L-rhamnose biosynthesis II
Cphamn1_1914	PWY-6808	dTDP-D-forosamine biosynthesis
Cphamn1_1914	PWY-6942	dTDP-D-desosamine biosynthesis
Cphamn1_1914	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Cphamn1_1914	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Cphamn1_1914	PWY-6974	dTDP-L-olivose biosynthesis
Cphamn1_1914	PWY-6976	dTDP-L-mycarose biosynthesis
Cphamn1_1914	PWY-7104	dTDP-L-megosamine biosynthesis
Cphamn1_1914	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Cphamn1_1914	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Cphamn1_1914	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Cphamn1_1914	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Cphamn1_1914	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Cphamn1_1914	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Cphamn1_1914	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Cphamn1_1914	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Cphamn1_1917	PWY-3221	dTDP-L-rhamnose biosynthesis II
Cphamn1_1917	PWY-6808	dTDP-D-forosamine biosynthesis
Cphamn1_1917	PWY-6942	dTDP-D-desosamine biosynthesis
Cphamn1_1917	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Cphamn1_1917	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Cphamn1_1917	PWY-6974	dTDP-L-olivose biosynthesis
Cphamn1_1917	PWY-6976	dTDP-L-mycarose biosynthesis
Cphamn1_1917	PWY-7104	dTDP-L-megosamine biosynthesis
Cphamn1_1917	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Cphamn1_1917	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Cphamn1_1917	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Cphamn1_1917	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Cphamn1_1917	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Cphamn1_1917	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Cphamn1_1917	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Cphamn1_1917	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Cphamn1_1919	PWY-3221	dTDP-L-rhamnose biosynthesis II
Cphamn1_1919	PWY-6808	dTDP-D-forosamine biosynthesis
Cphamn1_1919	PWY-6942	dTDP-D-desosamine biosynthesis
Cphamn1_1919	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Cphamn1_1919	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Cphamn1_1919	PWY-6974	dTDP-L-olivose biosynthesis
Cphamn1_1919	PWY-6976	dTDP-L-mycarose biosynthesis
Cphamn1_1919	PWY-7104	dTDP-L-megosamine biosynthesis
Cphamn1_1919	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Cphamn1_1919	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Cphamn1_1919	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Cphamn1_1919	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Cphamn1_1919	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Cphamn1_1919	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Cphamn1_1919	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Cphamn1_1919	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Cphamn1_1931	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Cphamn1_1932	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Cphamn1_1932	PWY-5739	GDP-D-perosamine biosynthesis
Cphamn1_1932	PWY-5740	GDP-L-colitose biosynthesis
Cphamn1_1932	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Cphamn1_1974	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cphamn1_1974	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cphamn1_1974	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cphamn1_1975	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cphamn1_1975	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cphamn1_1975	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cphamn1_1987	PWY-101	photosynthesis light reactions
Cphamn1_1987	PWY-6785	hydrogen production VIII
Cphamn1_1989	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cphamn1_1995	PWY-6605	adenine and adenosine salvage II
Cphamn1_1995	PWY-6610	adenine and adenosine salvage IV
Cphamn1_2003	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphamn1_2003	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphamn1_2007	PWY-5532	adenosine nucleotides degradation IV
Cphamn1_2007	PWY-5723	Rubisco shunt
Cphamn1_2038	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cphamn1_2039	PWY-4381	fatty acid biosynthesis initiation I
Cphamn1_2039	PWY-5743	3-hydroxypropanoate cycle
Cphamn1_2039	PWY-5744	glyoxylate assimilation
Cphamn1_2039	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cphamn1_2039	PWY-6679	jadomycin biosynthesis
Cphamn1_2039	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cphamn1_2041	PWY-5381	pyridine nucleotide cycling (plants)
Cphamn1_2041	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Cphamn1_2041	PWY-6596	adenosine nucleotides degradation I
Cphamn1_2041	PWY-6606	guanosine nucleotides degradation II
Cphamn1_2041	PWY-6607	guanosine nucleotides degradation I
Cphamn1_2041	PWY-6608	guanosine nucleotides degradation III
Cphamn1_2041	PWY-7185	UTP and CTP dephosphorylation I
Cphamn1_2048	PWY-5958	acridone alkaloid biosynthesis
Cphamn1_2048	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Cphamn1_2048	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Cphamn1_2062	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
Cphamn1_2065	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cphamn1_2065	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cphamn1_2074	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Cphamn1_2074	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Cphamn1_2074	PWY-5901	2,3-dihydroxybenzoate biosynthesis
Cphamn1_2074	PWY-6406	salicylate biosynthesis I
Cphamn1_2075	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Cphamn1_2075	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Cphamn1_2077	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Cphamn1_2077	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Cphamn1_2078	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Cphamn1_2078	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Cphamn1_2079	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Cphamn1_2079	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Cphamn1_2084	PWY-2941	L-lysine biosynthesis II
Cphamn1_2084	PWY-2942	L-lysine biosynthesis III
Cphamn1_2084	PWY-5097	L-lysine biosynthesis VI
Cphamn1_2093	PWY-2201	folate transformations I
Cphamn1_2093	PWY-3841	folate transformations II
Cphamn1_2102	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cphamn1_2102	PWY-5723	Rubisco shunt
Cphamn1_2102	PWY-6891	thiazole biosynthesis II (Bacillus)
Cphamn1_2102	PWY-6892	thiazole biosynthesis I (E. coli)
Cphamn1_2102	PWY-6901	superpathway of glucose and xylose degradation
Cphamn1_2102	PWY-7560	methylerythritol phosphate pathway II
Cphamn1_2103	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cphamn1_2103	PWY-6855	chitin degradation I (archaea)
Cphamn1_2103	PWY-6906	chitin derivatives degradation
Cphamn1_2104	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cphamn1_2145	PWY-3821	galactose degradation III
Cphamn1_2145	PWY-6317	galactose degradation I (Leloir pathway)
Cphamn1_2145	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Cphamn1_2145	PWY-6527	stachyose degradation
Cphamn1_2145	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Cphamn1_2145	PWY-7344	UDP-D-galactose biosynthesis
Cphamn1_2175	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cphamn1_2180	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cphamn1_2183	PWY-2941	L-lysine biosynthesis II
Cphamn1_2183	PWY-2942	L-lysine biosynthesis III
Cphamn1_2183	PWY-5097	L-lysine biosynthesis VI
Cphamn1_2183	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cphamn1_2183	PWY-6559	spermidine biosynthesis II
Cphamn1_2183	PWY-6562	norspermidine biosynthesis
Cphamn1_2183	PWY-7153	grixazone biosynthesis
Cphamn1_2183	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cphamn1_2190	PWY-5316	nicotine biosynthesis
Cphamn1_2190	PWY-5381	pyridine nucleotide cycling (plants)
Cphamn1_2190	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Cphamn1_2190	PWY-7342	superpathway of nicotine biosynthesis
Cphamn1_2191	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cphamn1_2191	PWY-6148	tetrahydromethanopterin biosynthesis
Cphamn1_2191	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Cphamn1_2191	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Cphamn1_2192	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cphamn1_2192	PWY-6148	tetrahydromethanopterin biosynthesis
Cphamn1_2192	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Cphamn1_2192	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Cphamn1_2205	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cphamn1_2205	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cphamn1_2207	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cphamn1_2207	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cphamn1_2208	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cphamn1_2208	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cphamn1_2232	PWY-6823	molybdenum cofactor biosynthesis
Cphamn1_2232	PWY-6891	thiazole biosynthesis II (Bacillus)
Cphamn1_2232	PWY-6892	thiazole biosynthesis I (E. coli)
Cphamn1_2232	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Cphamn1_2233	PWY-6936	seleno-amino acid biosynthesis
Cphamn1_2236	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cphamn1_2236	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Cphamn1_2236	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cphamn1_2236	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphamn1_2236	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Cphamn1_2236	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cphamn1_2236	PWY-7205	CMP phosphorylation
Cphamn1_2236	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cphamn1_2236	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphamn1_2236	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cphamn1_2236	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphamn1_2236	PWY-7224	purine deoxyribonucleosides salvage
Cphamn1_2236	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cphamn1_2236	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Cphamn1_2246	PWY-622	starch biosynthesis
Cphamn1_2254	PWY-7425	2-chloroacrylate degradation I
Cphamn1_2258	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cphamn1_2258	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cphamn1_2259	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cphamn1_2259	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cphamn1_2260	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cphamn1_2260	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cphamn1_2262	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cphamn1_2266	PWY-5659	GDP-mannose biosynthesis
Cphamn1_2266	PWY-6073	alginate biosynthesis I (algal)
Cphamn1_2266	PWY-6082	alginate biosynthesis II (bacterial)
Cphamn1_2266	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Cphamn1_2349	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cphamn1_2349	PWY-5686	UMP biosynthesis
Cphamn1_2349	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cphamn1_2357	PWY-3341	L-proline biosynthesis III
Cphamn1_2357	PWY-4981	L-proline biosynthesis II (from arginine)
Cphamn1_2357	PWY-6344	L-ornithine degradation II (Stickland reaction)
Cphamn1_2359	PWY-6823	molybdenum cofactor biosynthesis
Cphamn1_2361	PWY-6823	molybdenum cofactor biosynthesis
Cphamn1_2364	PWY-7429	arsenite oxidation II (respiratory)
Cphamn1_2365	PWY-7429	arsenite oxidation II (respiratory)
Cphamn1_2366	PWY-6823	molybdenum cofactor biosynthesis
Cphamn1_2378	PWY-5964	guanylyl molybdenum cofactor biosynthesis
Cphamn1_2394	PWY-842	starch degradation I
Cphamn1_2422	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphamn1_2422	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphamn1_2426	PWY-5674	nitrate reduction IV (dissimilatory)
Cphamn1_2430	PWY-5686	UMP biosynthesis
Cphamn1_2431	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
Cphamn1_2432	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Cphamn1_2432	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cphamn1_2432	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Cphamn1_2436	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cphamn1_2436	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cphamn1_2438	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cphamn1_2438	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cphamn1_2442	PWY-5667	CDP-diacylglycerol biosynthesis I
Cphamn1_2442	PWY-5981	CDP-diacylglycerol biosynthesis III
Cphamn1_2444	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cphamn1_2444	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cphamn1_2444	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cphamn1_2445	PWY-2941	L-lysine biosynthesis II
Cphamn1_2445	PWY-2942	L-lysine biosynthesis III
Cphamn1_2445	PWY-5097	L-lysine biosynthesis VI
Cphamn1_2445	PWY-6559	spermidine biosynthesis II
Cphamn1_2445	PWY-6562	norspermidine biosynthesis
Cphamn1_2445	PWY-7153	grixazone biosynthesis
Cphamn1_2454	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Cphamn1_2455	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cphamn1_2458	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Cphamn1_2459	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Cphamn1_2459	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Cphamn1_2472	PWY-5491	diethylphosphate degradation
Cphamn1_2476	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cphamn1_2476	PWY-5723	Rubisco shunt
Cphamn1_2488	PWY-5381	pyridine nucleotide cycling (plants)
Cphamn1_2488	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Cphamn1_2509	PWY-3821	galactose degradation III
Cphamn1_2509	PWY-6317	galactose degradation I (Leloir pathway)
Cphamn1_2509	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Cphamn1_2509	PWY-6527	stachyose degradation
Cphamn1_2509	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Cphamn1_2509	PWY-7344	UDP-D-galactose biosynthesis
Cphamn1_2514	PWY-3781	aerobic respiration I (cytochrome c)
Cphamn1_2514	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cphamn1_2514	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cphamn1_2514	PWY-5690	TCA cycle II (plants and fungi)
Cphamn1_2514	PWY-6728	methylaspartate cycle
Cphamn1_2514	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cphamn1_2514	PWY-7254	TCA cycle VII (acetate-producers)
Cphamn1_2514	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cphamn1_2520	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphamn1_2520	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphamn1_2521	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphamn1_2521	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphamn1_2522	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cphamn1_2522	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Cphamn1_2522	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cphamn1_2522	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cphamn1_2524	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphamn1_2524	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphamn1_2525	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cphamn1_2525	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cphamn1_2525	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cphamn1_2526	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphamn1_2526	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphamn1_2533	PWY-3461	L-tyrosine biosynthesis II
Cphamn1_2533	PWY-3462	L-phenylalanine biosynthesis II
Cphamn1_2533	PWY-6120	L-tyrosine biosynthesis III
Cphamn1_2533	PWY-6627	salinosporamide A biosynthesis
Cphamn1_2535	PWY-1042	glycolysis IV (plant cytosol)
Cphamn1_2535	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphamn1_2535	PWY-6886	1-butanol autotrophic biosynthesis
Cphamn1_2535	PWY-6901	superpathway of glucose and xylose degradation
Cphamn1_2535	PWY-7003	glycerol degradation to butanol