Chro_0005	PWY-6167	flavin biosynthesis II (archaea)
Chro_0006	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Chro_0006	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Chro_0006	PWY-7242	D-fructuronate degradation
Chro_0006	PWY-7310	D-glucosaminate degradation
Chro_0009	PWY-5278	sulfite oxidation III
Chro_0009	PWY-5340	sulfate activation for sulfonation
Chro_0009	PWY-6683	sulfate reduction III (assimilatory)
Chro_0009	PWY-6932	selenate reduction
Chro_0038	PWY-7052	cyanophycin metabolism
Chro_0041	PWY-5381	pyridine nucleotide cycling (plants)
Chro_0041	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Chro_0043	PWY-3461	L-tyrosine biosynthesis II
Chro_0043	PWY-3462	L-phenylalanine biosynthesis II
Chro_0043	PWY-6120	L-tyrosine biosynthesis III
Chro_0043	PWY-6406	salicylate biosynthesis I
Chro_0043	PWY-6627	salinosporamide A biosynthesis
Chro_0045	PWY-5381	pyridine nucleotide cycling (plants)
Chro_0045	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Chro_0046	PWY-5381	pyridine nucleotide cycling (plants)
Chro_0049	PWY-5723	Rubisco shunt
Chro_0093	PWY-5057	L-valine degradation II
Chro_0093	PWY-5076	L-leucine degradation III
Chro_0093	PWY-5078	L-isoleucine degradation II
Chro_0093	PWY-5101	L-isoleucine biosynthesis II
Chro_0093	PWY-5103	L-isoleucine biosynthesis III
Chro_0093	PWY-5104	L-isoleucine biosynthesis IV
Chro_0093	PWY-5108	L-isoleucine biosynthesis V
Chro_0099	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Chro_0099	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Chro_0099	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Chro_0099	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Chro_0100	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Chro_0100	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Chro_0100	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Chro_0100	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Chro_0154	PWY-6823	molybdenum cofactor biosynthesis
Chro_0154	PWY-6891	thiazole biosynthesis II (Bacillus)
Chro_0154	PWY-6892	thiazole biosynthesis I (E. coli)
Chro_0154	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Chro_0156	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Chro_0161	PWY-1042	glycolysis IV (plant cytosol)
Chro_0161	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Chro_0161	PWY-5484	glycolysis II (from fructose 6-phosphate)
Chro_0161	PWY-5723	Rubisco shunt
Chro_0161	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Chro_0161	PWY-6886	1-butanol autotrophic biosynthesis
Chro_0161	PWY-6901	superpathway of glucose and xylose degradation
Chro_0161	PWY-7003	glycerol degradation to butanol
Chro_0161	PWY-7124	ethylene biosynthesis V (engineered)
Chro_0161	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Chro_0177	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Chro_0208	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Chro_0220	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
Chro_0220	PWY-5940	streptomycin biosynthesis
Chro_0225	PWY-3221	dTDP-L-rhamnose biosynthesis II
Chro_0225	PWY-6808	dTDP-D-forosamine biosynthesis
Chro_0225	PWY-6942	dTDP-D-desosamine biosynthesis
Chro_0225	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Chro_0225	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Chro_0225	PWY-6974	dTDP-L-olivose biosynthesis
Chro_0225	PWY-6976	dTDP-L-mycarose biosynthesis
Chro_0225	PWY-7104	dTDP-L-megosamine biosynthesis
Chro_0225	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Chro_0225	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Chro_0225	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Chro_0225	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Chro_0225	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Chro_0225	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Chro_0225	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Chro_0225	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Chro_0243	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Chro_0243	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Chro_0249	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Chro_0249	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Chro_0249	PWY-6268	adenosylcobalamin salvage from cobalamin
Chro_0249	PWY-6269	adenosylcobalamin salvage from cobinamide II
Chro_0251	PWY-5667	CDP-diacylglycerol biosynthesis I
Chro_0251	PWY-5981	CDP-diacylglycerol biosynthesis III
Chro_0279	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Chro_0310	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Chro_0310	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Chro_0310	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Chro_0313	PWY-2781	<i>cis</i>-zeatin biosynthesis
Chro_0326	PWY-6167	flavin biosynthesis II (archaea)
Chro_0330	PWY-2301	<i>myo</i>-inositol biosynthesis
Chro_0330	PWY-4702	phytate degradation I
Chro_0330	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
Chro_0347	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Chro_0347	PWY-6148	tetrahydromethanopterin biosynthesis
Chro_0347	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Chro_0347	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Chro_0379	PWY-6703	preQ<sub>0</sub> biosynthesis
Chro_0390	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Chro_0390	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Chro_0395	PWY-5941	glycogen degradation II (eukaryotic)
Chro_0395	PWY-622	starch biosynthesis
Chro_0395	PWY-6731	starch degradation III
Chro_0395	PWY-6737	starch degradation V
Chro_0395	PWY-7238	sucrose biosynthesis II
Chro_0396	PWY-1042	glycolysis IV (plant cytosol)
Chro_0396	PWY-5484	glycolysis II (from fructose 6-phosphate)
Chro_0396	PWY-6901	superpathway of glucose and xylose degradation
Chro_0396	PWY-7003	glycerol degradation to butanol
Chro_0399	PWY-5482	pyruvate fermentation to acetate II
Chro_0399	PWY-5485	pyruvate fermentation to acetate IV
Chro_0399	PWY-5497	purine nucleobases degradation II (anaerobic)
Chro_0407	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Chro_0407	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Chro_0434	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Chro_0438	PWY-4381	fatty acid biosynthesis initiation I
Chro_0438	PWY-5743	3-hydroxypropanoate cycle
Chro_0438	PWY-5744	glyoxylate assimilation
Chro_0438	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Chro_0438	PWY-6679	jadomycin biosynthesis
Chro_0438	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Chro_0442	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Chro_0442	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Chro_0454	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Chro_0468	PWY-2201	folate transformations I
Chro_0468	PWY-5497	purine nucleobases degradation II (anaerobic)
Chro_0471	PWY-5367	petroselinate biosynthesis
Chro_0471	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Chro_0471	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Chro_0471	PWY-5989	stearate biosynthesis II (bacteria and plants)
Chro_0471	PWY-5994	palmitate biosynthesis I (animals and fungi)
Chro_0471	PWY-6113	superpathway of mycolate biosynthesis
Chro_0471	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Chro_0471	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Chro_0471	PWY-6951	Chro_0471
Chro_0471	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Chro_0471	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Chro_0471	PWYG-321	mycolate biosynthesis
Chro_0473	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Chro_0478	PWY-6749	CMP-legionaminate biosynthesis I
Chro_0492	PWY-5941	glycogen degradation II (eukaryotic)
Chro_0492	PWY-6724	starch degradation II
Chro_0492	PWY-6737	starch degradation V
Chro_0492	PWY-7238	sucrose biosynthesis II
Chro_0506	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Chro_0518	PWY-6854	ethylene biosynthesis III (microbes)
Chro_0520	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Chro_0520	PWY-5723	Rubisco shunt
Chro_0544	PWY-5694	allantoin degradation to glyoxylate I
Chro_0544	PWY-5705	allantoin degradation to glyoxylate III
Chro_0548	PWY-6123	inosine-5'-phosphate biosynthesis I
Chro_0548	PWY-6124	inosine-5'-phosphate biosynthesis II
Chro_0548	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Chro_0548	PWY-7234	inosine-5'-phosphate biosynthesis III
Chro_0552	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Chro_0552	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Chro_0552	PWY-5989	stearate biosynthesis II (bacteria and plants)
Chro_0552	PWY-6113	superpathway of mycolate biosynthesis
Chro_0552	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Chro_0552	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Chro_0552	PWY-7096	triclosan resistance
Chro_0552	PWYG-321	mycolate biosynthesis
Chro_0580	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Chro_0580	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Chro_0581	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Chro_0581	PWY-6148	tetrahydromethanopterin biosynthesis
Chro_0581	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Chro_0581	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Chro_0596	PWY-7560	methylerythritol phosphate pathway II
Chro_0622	PWY-2201	folate transformations I
Chro_0622	PWY-3841	folate transformations II
Chro_0624	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Chro_0624	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Chro_0631	PWY-3781	aerobic respiration I (cytochrome c)
Chro_0631	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Chro_0631	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Chro_0631	PWY-5690	TCA cycle II (plants and fungi)
Chro_0631	PWY-6728	methylaspartate cycle
Chro_0631	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Chro_0631	PWY-7254	TCA cycle VII (acetate-producers)
Chro_0631	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Chro_0637	PWY-6700	queuosine biosynthesis
Chro_0649	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Chro_0649	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Chro_0653	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Chro_0653	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Chro_0653	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Chro_0664	PWY-101	photosynthesis light reactions
Chro_0664	PWY-6785	hydrogen production VIII
Chro_0680	PWY-7238	sucrose biosynthesis II
Chro_0680	PWY-7347	sucrose biosynthesis III
Chro_0689	PWY-4381	fatty acid biosynthesis initiation I
Chro_0690	PWY-4381	fatty acid biosynthesis initiation I
Chro_0690	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Chro_0690	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Chro_0691	PWY-5667	CDP-diacylglycerol biosynthesis I
Chro_0691	PWY-5981	CDP-diacylglycerol biosynthesis III
Chro_0691	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
Chro_0691	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Chro_0717	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Chro_0717	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Chro_0718	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Chro_0718	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Chro_0719	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Chro_0720	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Chro_0720	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Chro_0733	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
Chro_0733	PWY-5940	streptomycin biosynthesis
Chro_0735	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Chro_0735	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Chro_0735	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Chro_0735	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Chro_0755	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Chro_0756	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Chro_0756	PWY-5723	Rubisco shunt
Chro_0757	PWY-5484	glycolysis II (from fructose 6-phosphate)
Chro_0760	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Chro_0760	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Chro_0760	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Chro_0776	PWY-6749	CMP-legionaminate biosynthesis I
Chro_0777	PWY-101	photosynthesis light reactions
Chro_0777	PWY-6785	hydrogen production VIII
Chro_0778	PWY-6164	3-dehydroquinate biosynthesis I
Chro_0816	PWY-2582	brassinosteroid biosynthesis II
Chro_0816	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Chro_0816	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Chro_0816	PWY-6948	sitosterol degradation to androstenedione
Chro_0816	PWY-699	brassinosteroid biosynthesis I
Chro_0816	PWY-7299	progesterone biosynthesis
Chro_0829	PWY-3781	aerobic respiration I (cytochrome c)
Chro_0829	PWY-4521	arsenite oxidation I (respiratory)
Chro_0829	PWY-6692	Fe(II) oxidation
Chro_0829	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Chro_0852	PWY-2261	ascorbate glutathione cycle
Chro_0852	PWY-4061	glutathione-mediated detoxification I
Chro_0852	PWY-4202	arsenate detoxification I (glutaredoxin)
Chro_0852	PWY-6370	ascorbate recycling (cytosolic)
Chro_0852	PWY-6842	glutathione-mediated detoxification II
Chro_0852	PWY-7112	4-hydroxy-2-nonenal detoxification
Chro_0852	PWY-7533	gliotoxin biosynthesis
Chro_0876	PWY-6807	xyloglucan degradation II (exoglucanase)
Chro_0890	PWY-4261	glycerol degradation I
Chro_0893	PWY-5686	UMP biosynthesis
Chro_0897	PWY-6703	preQ<sub>0</sub> biosynthesis
Chro_0917	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Chro_0917	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Chro_0917	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Chro_0920	PWY-622	starch biosynthesis
Chro_0927	PWY-5691	urate degradation to allantoin I
Chro_0927	PWY-7394	urate degradation to allantoin II
Chro_0928	PWY-5691	urate degradation to allantoin I
Chro_0928	PWY-7394	urate degradation to allantoin II
Chro_0965	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Chro_0965	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Chro_0975	PWY-101	photosynthesis light reactions
Chro_0975	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Chro_0976	PWY-5723	Rubisco shunt
Chro_0977	PWY-621	sucrose degradation III (sucrose invertase)
Chro_0979	PWY-6167	flavin biosynthesis II (archaea)
Chro_0979	PWY-6168	flavin biosynthesis III (fungi)
Chro_0979	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Chro_0981	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Chro_0981	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Chro_0984	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Chro_0984	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Chro_1000	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
Chro_1000	PWY-622	starch biosynthesis
Chro_1007	PWY-5532	adenosine nucleotides degradation IV
Chro_1007	PWY-5723	Rubisco shunt
Chro_1018	PWY-101	photosynthesis light reactions
Chro_1018	PWY-6785	hydrogen production VIII
Chro_1019	PWY-101	photosynthesis light reactions
Chro_1019	PWY-6785	hydrogen production VIII
Chro_1030	PWY-101	photosynthesis light reactions
Chro_1030	PWY-6785	hydrogen production VIII
Chro_1031	PWY-101	photosynthesis light reactions
Chro_1031	PWY-6785	hydrogen production VIII
Chro_1037	PWY-101	photosynthesis light reactions
Chro_1037	PWY-6785	hydrogen production VIII
Chro_1067	PWY-7052	cyanophycin metabolism
Chro_1082	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Chro_1092	PWY-1042	glycolysis IV (plant cytosol)
Chro_1092	PWY-5484	glycolysis II (from fructose 6-phosphate)
Chro_1092	PWY-6886	1-butanol autotrophic biosynthesis
Chro_1092	PWY-6901	superpathway of glucose and xylose degradation
Chro_1092	PWY-7003	glycerol degradation to butanol
Chro_1116	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
Chro_1116	PWY-622	starch biosynthesis
Chro_1119	PWY-5344	L-homocysteine biosynthesis
Chro_1120	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Chro_1120	PWY-7494	choline degradation IV
Chro_1130	PWY-5530	sorbitol biosynthesis II
Chro_1139	PWY-1622	formaldehyde assimilation I (serine pathway)
Chro_1139	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Chro_1139	PWY-5913	TCA cycle VI (obligate autotrophs)
Chro_1139	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Chro_1139	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Chro_1139	PWY-6549	L-glutamine biosynthesis III
Chro_1139	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Chro_1139	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Chro_1139	PWY-7124	ethylene biosynthesis V (engineered)
Chro_1141	PWY-101	photosynthesis light reactions
Chro_1141	PWY-6785	hydrogen production VIII
Chro_1143	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
Chro_1143	PWY-622	starch biosynthesis
Chro_1155	PWY-5382	hydrogen oxidation II (aerobic, NAD)
Chro_1155	PWY-6758	hydrogen production II
Chro_1159	PWY-5484	glycolysis II (from fructose 6-phosphate)
Chro_1201	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Chro_1201	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Chro_1201	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Chro_1211	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Chro_1211	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Chro_1218	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Chro_1232	PWY-2941	L-lysine biosynthesis II
Chro_1232	PWY-2942	L-lysine biosynthesis III
Chro_1232	PWY-5097	L-lysine biosynthesis VI
Chro_1260	PWY-6840	homoglutathione biosynthesis
Chro_1260	PWY-7255	ergothioneine biosynthesis I (bacteria)
Chro_1275	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Chro_1275	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Chro_1292	PWY-6012	acyl carrier protein metabolism I
Chro_1295	PWY-6349	CDP-archaeol biosynthesis
Chro_1305	PWY-5349	esculetin biosynthesis
Chro_1305	PWY-6752	<i>o</i>-diquinones biosynthesis
Chro_1339	PWY-7158	L-phenylalanine degradation V
Chro_1382	PWY-5941	glycogen degradation II (eukaryotic)
Chro_1382	PWY-6724	starch degradation II
Chro_1382	PWY-6737	starch degradation V
Chro_1382	PWY-7238	sucrose biosynthesis II
Chro_1389	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Chro_1389	PWY-2201	folate transformations I
Chro_1389	PWY-3841	folate transformations II
Chro_1389	PWY-5030	L-histidine degradation III
Chro_1389	PWY-5497	purine nucleobases degradation II (anaerobic)
Chro_1389	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Chro_1417	PWY-7560	methylerythritol phosphate pathway II
Chro_1499	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Chro_1510	PWY-5941	glycogen degradation II (eukaryotic)
Chro_1510	PWY-622	starch biosynthesis
Chro_1510	PWY-6731	starch degradation III
Chro_1510	PWY-6737	starch degradation V
Chro_1510	PWY-7238	sucrose biosynthesis II
Chro_1511	PWY-2661	trehalose biosynthesis V
Chro_1512	PWY-2661	trehalose biosynthesis V
Chro_1514	PWY-5941	glycogen degradation II (eukaryotic)
Chro_1514	PWY-6724	starch degradation II
Chro_1514	PWY-6737	starch degradation V
Chro_1514	PWY-7238	sucrose biosynthesis II
Chro_1515	PWY-2622	trehalose biosynthesis IV
Chro_1548	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Chro_1548	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Chro_1549	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Chro_1549	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Chro_1550	PWY-5663	tetrahydrobiopterin biosynthesis I
Chro_1550	PWY-5664	tetrahydrobiopterin biosynthesis II
Chro_1550	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Chro_1550	PWY-6703	preQ<sub>0</sub> biosynthesis
Chro_1550	PWY-6983	tetrahydrobiopterin biosynthesis III
Chro_1550	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Chro_1552	PWY-4381	fatty acid biosynthesis initiation I
Chro_1552	PWY-5743	3-hydroxypropanoate cycle
Chro_1552	PWY-5744	glyoxylate assimilation
Chro_1552	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Chro_1552	PWY-6679	jadomycin biosynthesis
Chro_1552	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Chro_1553	PWY-6622	heptadecane biosynthesis
Chro_1553	PWY-7032	alkane biosynthesis I
Chro_1554	PWY-282	cuticular wax biosynthesis
Chro_1554	PWY-6622	heptadecane biosynthesis
Chro_1554	PWY-7032	alkane biosynthesis I
Chro_1599	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Chro_1599	PWY-3162	L-tryptophan degradation V (side chain pathway)
Chro_1599	PWY-5057	L-valine degradation II
Chro_1599	PWY-5076	L-leucine degradation III
Chro_1599	PWY-5078	L-isoleucine degradation II
Chro_1599	PWY-5079	L-phenylalanine degradation III
Chro_1599	PWY-5082	L-methionine degradation III
Chro_1599	PWY-5480	pyruvate fermentation to ethanol I
Chro_1599	PWY-5486	pyruvate fermentation to ethanol II
Chro_1599	PWY-5751	phenylethanol biosynthesis
Chro_1599	PWY-6028	acetoin degradation
Chro_1599	PWY-6313	serotonin degradation
Chro_1599	PWY-6333	acetaldehyde biosynthesis I
Chro_1599	PWY-6342	noradrenaline and adrenaline degradation
Chro_1599	PWY-6587	pyruvate fermentation to ethanol III
Chro_1599	PWY-6802	salidroside biosynthesis
Chro_1599	PWY-6871	3-methylbutanol biosynthesis
Chro_1599	PWY-7013	L-1,2-propanediol degradation
Chro_1599	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Chro_1599	PWY-7118	chitin degradation to ethanol
Chro_1599	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Chro_1599	PWY-7557	dehydrodiconiferyl alcohol degradation
Chro_1603	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
Chro_1603	PWY-6174	mevalonate pathway II (archaea)
Chro_1603	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
Chro_1603	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
Chro_1603	PWY-7102	bisabolene biosynthesis
Chro_1603	PWY-7391	isoprene biosynthesis II (engineered)
Chro_1603	PWY-7524	mevalonate pathway III (archaea)
Chro_1603	PWY-7560	methylerythritol phosphate pathway II
Chro_1603	PWY-922	mevalonate pathway I
Chro_1612	PWY-5392	reductive TCA cycle II
Chro_1612	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Chro_1612	PWY-5690	TCA cycle II (plants and fungi)
Chro_1612	PWY-5913	TCA cycle VI (obligate autotrophs)
Chro_1612	PWY-6728	methylaspartate cycle
Chro_1612	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Chro_1612	PWY-7254	TCA cycle VII (acetate-producers)
Chro_1612	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Chro_1615	PWY-6938	NADH repair
Chro_1627	PWY-5484	glycolysis II (from fructose 6-phosphate)
Chro_1640	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Chro_1640	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Chro_1645	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Chro_1646	PWY-3841	folate transformations II
Chro_1646	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Chro_1646	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Chro_1646	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Chro_1646	PWY-7199	pyrimidine deoxyribonucleosides salvage
Chro_1646	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Chro_1654	PWY-6825	phosphatidylcholine biosynthesis V
Chro_1679	PWY-101	photosynthesis light reactions
Chro_1679	PWY-6785	hydrogen production VIII
Chro_1690	PWY-3341	L-proline biosynthesis III
Chro_1690	PWY-4981	L-proline biosynthesis II (from arginine)
Chro_1690	PWY-6344	L-ornithine degradation II (Stickland reaction)
Chro_1692	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Chro_1694	PWY-6012	acyl carrier protein metabolism I
Chro_1694	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Chro_1695	PWY-5958	acridone alkaloid biosynthesis
Chro_1695	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Chro_1695	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Chro_1700	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
Chro_1700	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
Chro_1700	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
Chro_1700	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
Chro_1700	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
Chro_1700	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
Chro_1700	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
Chro_1700	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
Chro_1700	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Chro_1700	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
Chro_1712	PWY-5386	methylglyoxal degradation I
Chro_1737	PWY-2941	L-lysine biosynthesis II
Chro_1737	PWY-5097	L-lysine biosynthesis VI
Chro_1741	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Chro_1741	PWY-5723	Rubisco shunt
Chro_1741	PWY-6891	thiazole biosynthesis II (Bacillus)
Chro_1741	PWY-6892	thiazole biosynthesis I (E. coli)
Chro_1741	PWY-6901	superpathway of glucose and xylose degradation
Chro_1741	PWY-7560	methylerythritol phosphate pathway II
Chro_1743	PWY-6891	thiazole biosynthesis II (Bacillus)
Chro_1743	PWY-6892	thiazole biosynthesis I (E. coli)
Chro_1743	PWY-7560	methylerythritol phosphate pathway II
Chro_1744	PWY-2941	L-lysine biosynthesis II
Chro_1744	PWY-5097	L-lysine biosynthesis VI
Chro_1764	PWY-5839	menaquinol-7 biosynthesis
Chro_1764	PWY-5844	menaquinol-9 biosynthesis
Chro_1764	PWY-5849	menaquinol-6 biosynthesis
Chro_1764	PWY-5890	menaquinol-10 biosynthesis
Chro_1764	PWY-5891	menaquinol-11 biosynthesis
Chro_1764	PWY-5892	menaquinol-12 biosynthesis
Chro_1764	PWY-5895	menaquinol-13 biosynthesis
Chro_1768	PWY-381	nitrate reduction II (assimilatory)
Chro_1768	PWY-5675	nitrate reduction V (assimilatory)
Chro_1768	PWY-6549	L-glutamine biosynthesis III
Chro_1768	PWY-6963	ammonia assimilation cycle I
Chro_1768	PWY-6964	ammonia assimilation cycle II
Chro_1777	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Chro_1786	PWY-5530	sorbitol biosynthesis II
Chro_1800	PWY-2941	L-lysine biosynthesis II
Chro_1800	PWY-2942	L-lysine biosynthesis III
Chro_1800	PWY-5097	L-lysine biosynthesis VI
Chro_1801	PWY-2941	L-lysine biosynthesis II
Chro_1801	PWY-2942	L-lysine biosynthesis III
Chro_1801	PWY-5097	L-lysine biosynthesis VI
Chro_1801	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Chro_1801	PWY-6559	spermidine biosynthesis II
Chro_1801	PWY-6562	norspermidine biosynthesis
Chro_1801	PWY-7153	grixazone biosynthesis
Chro_1801	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Chro_1817	PWY-4261	glycerol degradation I
Chro_1823	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Chro_1847	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Chro_1847	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Chro_1847	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Chro_1850	PWY-6840	homoglutathione biosynthesis
Chro_1850	PWY-7255	ergothioneine biosynthesis I (bacteria)
Chro_1887	PWY-6012	acyl carrier protein metabolism I
Chro_1887	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Chro_1917	PWY-6523	nitrite-dependent anaerobic methane oxidation
Chro_1917	PWY-6748	nitrate reduction VII (denitrification)
Chro_1917	PWY-7084	nitrifier denitrification
Chro_1926	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Chro_1933	PWY-5198	factor 420 biosynthesis
Chro_1940	PWY-3461	L-tyrosine biosynthesis II
Chro_1940	PWY-3462	L-phenylalanine biosynthesis II
Chro_1940	PWY-6120	L-tyrosine biosynthesis III
Chro_1940	PWY-6627	salinosporamide A biosynthesis
Chro_1943	PWY-5497	purine nucleobases degradation II (anaerobic)
Chro_1943	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Chro_1943	PWY-6538	caffeine degradation III (bacteria, via demethylation)
Chro_1943	PWY-6596	adenosine nucleotides degradation I
Chro_1943	PWY-6606	guanosine nucleotides degradation II
Chro_1943	PWY-6607	guanosine nucleotides degradation I
Chro_1943	PWY-6608	guanosine nucleotides degradation III
Chro_1943	PWY-6999	theophylline degradation
Chro_1944	PWY-5497	purine nucleobases degradation II (anaerobic)
Chro_1944	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Chro_1944	PWY-6538	caffeine degradation III (bacteria, via demethylation)
Chro_1944	PWY-6596	adenosine nucleotides degradation I
Chro_1944	PWY-6606	guanosine nucleotides degradation II
Chro_1944	PWY-6607	guanosine nucleotides degradation I
Chro_1944	PWY-6608	guanosine nucleotides degradation III
Chro_1944	PWY-6999	theophylline degradation
Chro_1971	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Chro_1971	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Chro_1971	PWY-6897	thiamin salvage II
Chro_1971	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Chro_1971	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Chro_1971	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Chro_1971	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Chro_1979	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Chro_1979	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Chro_1990	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Chro_2003	PWY-6823	molybdenum cofactor biosynthesis
Chro_2003	PWY-6891	thiazole biosynthesis II (Bacillus)
Chro_2003	PWY-6892	thiazole biosynthesis I (E. coli)
Chro_2003	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Chro_2009	PWY-1001	cellulose biosynthesis
Chro_2017	PWY-4081	glutathione redox reactions I
Chro_2037	PWY-101	photosynthesis light reactions
Chro_2037	PWY-6785	hydrogen production VIII
Chro_2048	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Chro_2048	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Chro_2048	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Chro_2065	PWY-5381	pyridine nucleotide cycling (plants)
Chro_2065	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Chro_2065	PWY-6596	adenosine nucleotides degradation I
Chro_2065	PWY-6606	guanosine nucleotides degradation II
Chro_2065	PWY-6607	guanosine nucleotides degradation I
Chro_2065	PWY-6608	guanosine nucleotides degradation III
Chro_2065	PWY-7185	UTP and CTP dephosphorylation I
Chro_2066	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Chro_2066	PWY-6167	flavin biosynthesis II (archaea)
Chro_2066	PWY-6168	flavin biosynthesis III (fungi)
Chro_2070	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Chro_2070	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Chro_2070	PWY-6164	3-dehydroquinate biosynthesis I
Chro_2082	PWY-3162	L-tryptophan degradation V (side chain pathway)
Chro_2082	PWY-5057	L-valine degradation II
Chro_2082	PWY-5076	L-leucine degradation III
Chro_2082	PWY-5078	L-isoleucine degradation II
Chro_2082	PWY-5079	L-phenylalanine degradation III
Chro_2082	PWY-5082	L-methionine degradation III
Chro_2082	PWY-5480	pyruvate fermentation to ethanol I
Chro_2082	PWY-5486	pyruvate fermentation to ethanol II
Chro_2082	PWY-5751	phenylethanol biosynthesis
Chro_2082	PWY-6028	acetoin degradation
Chro_2082	PWY-6313	serotonin degradation
Chro_2082	PWY-6333	acetaldehyde biosynthesis I
Chro_2082	PWY-6342	noradrenaline and adrenaline degradation
Chro_2082	PWY-6587	pyruvate fermentation to ethanol III
Chro_2082	PWY-6802	salidroside biosynthesis
Chro_2082	PWY-6871	3-methylbutanol biosynthesis
Chro_2082	PWY-7013	L-1,2-propanediol degradation
Chro_2082	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Chro_2082	PWY-7118	chitin degradation to ethanol
Chro_2082	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Chro_2082	PWY-7557	dehydrodiconiferyl alcohol degradation
Chro_2084	PWY-5451	acetone degradation I (to methylglyoxal)
Chro_2084	PWY-6588	pyruvate fermentation to acetone
Chro_2084	PWY-6876	isopropanol biosynthesis
Chro_2084	PWY-7466	acetone degradation III (to propane-1,2-diol)
Chro_2090	PWY-6823	molybdenum cofactor biosynthesis
Chro_2092	PWY-6832	2-aminoethylphosphonate degradation II
Chro_2114	PWY-7560	methylerythritol phosphate pathway II
Chro_2132	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Chro_2157	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Chro_2157	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Chro_2163	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
Chro_2163	PWY-581	indole-3-acetate biosynthesis II
Chro_2163	PWY-7308	acrylonitrile degradation I
Chro_2172	PWY-5941	glycogen degradation II (eukaryotic)
Chro_2172	PWY-6724	starch degradation II
Chro_2172	PWY-6737	starch degradation V
Chro_2172	PWY-7238	sucrose biosynthesis II
Chro_2194	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
Chro_2211	PWY-6854	ethylene biosynthesis III (microbes)
Chro_2221	PWY-5686	UMP biosynthesis
Chro_2226	PWY-2201	folate transformations I
Chro_2226	PWY-3841	folate transformations II
Chro_2233	PWY-702	L-methionine biosynthesis II
Chro_2237	PWY-101	photosynthesis light reactions
Chro_2237	PWY-6785	hydrogen production VIII
Chro_2249	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Chro_2249	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Chro_2249	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Chro_2259	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Chro_2265	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Chro_2265	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Chro_2265	PWY-5989	stearate biosynthesis II (bacteria and plants)
Chro_2265	PWY-5994	palmitate biosynthesis I (animals and fungi)
Chro_2265	PWY-6113	superpathway of mycolate biosynthesis
Chro_2265	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Chro_2265	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Chro_2265	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Chro_2265	PWYG-321	mycolate biosynthesis
Chro_2268	PWY-6123	inosine-5'-phosphate biosynthesis I
Chro_2268	PWY-6124	inosine-5'-phosphate biosynthesis II
Chro_2268	PWY-7234	inosine-5'-phosphate biosynthesis III
Chro_2289	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Chro_2289	PWY-5739	GDP-D-perosamine biosynthesis
Chro_2289	PWY-5740	GDP-L-colitose biosynthesis
Chro_2289	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Chro_2310	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Chro_2326	PWY-5101	L-isoleucine biosynthesis II
Chro_2326	PWY-5103	L-isoleucine biosynthesis III
Chro_2326	PWY-5104	L-isoleucine biosynthesis IV
Chro_2326	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Chro_2326	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Chro_2326	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Chro_2326	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Chro_2333	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Chro_2333	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Chro_2333	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Chro_2341	PWY-5747	2-methylcitrate cycle II
Chro_2349	PWY-6807	xyloglucan degradation II (exoglucanase)
Chro_2362	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Chro_2362	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Chro_2385	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Chro_2387	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Chro_2387	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Chro_2387	PWY-6268	adenosylcobalamin salvage from cobalamin
Chro_2387	PWY-6269	adenosylcobalamin salvage from cobinamide II
Chro_2403	PWY-6745	phytochelatins biosynthesis
Chro_2415	PWY-5392	reductive TCA cycle II
Chro_2415	PWY-5537	pyruvate fermentation to acetate V
Chro_2415	PWY-5538	pyruvate fermentation to acetate VI
Chro_2415	PWY-5690	TCA cycle II (plants and fungi)
Chro_2415	PWY-5913	TCA cycle VI (obligate autotrophs)
Chro_2415	PWY-6728	methylaspartate cycle
Chro_2415	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Chro_2415	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Chro_2418	PWY-5097	L-lysine biosynthesis VI
Chro_2431	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Chro_2459	PWY-842	starch degradation I
Chro_2461	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Chro_2461	PWY-5739	GDP-D-perosamine biosynthesis
Chro_2461	PWY-5740	GDP-L-colitose biosynthesis
Chro_2461	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Chro_2470	PWY-3221	dTDP-L-rhamnose biosynthesis II
Chro_2470	PWY-6808	dTDP-D-forosamine biosynthesis
Chro_2470	PWY-6942	dTDP-D-desosamine biosynthesis
Chro_2470	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Chro_2470	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Chro_2470	PWY-6974	dTDP-L-olivose biosynthesis
Chro_2470	PWY-6976	dTDP-L-mycarose biosynthesis
Chro_2470	PWY-7104	dTDP-L-megosamine biosynthesis
Chro_2470	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Chro_2470	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Chro_2470	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Chro_2470	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Chro_2470	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Chro_2470	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Chro_2470	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Chro_2470	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Chro_2471	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Chro_2471	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Chro_2472	PWY-2201	folate transformations I
Chro_2472	PWY-3841	folate transformations II
Chro_2477	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Chro_2477	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Chro_2480	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Chro_2480	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Chro_2481	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Chro_2481	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Chro_2520	PWY-6823	molybdenum cofactor biosynthesis
Chro_2546	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Chro_2546	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Chro_2546	PWY-6268	adenosylcobalamin salvage from cobalamin
Chro_2546	PWY-6269	adenosylcobalamin salvage from cobinamide II
Chro_2548	PWY-4061	glutathione-mediated detoxification I
Chro_2548	PWY-6842	glutathione-mediated detoxification II
Chro_2548	PWY-7112	4-hydroxy-2-nonenal detoxification
Chro_2548	PWY-7533	gliotoxin biosynthesis
Chro_2582	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Chro_2596	PWY-4041	&gamma;-glutamyl cycle
Chro_2597	PWY-5350	thiosulfate disproportionation III (rhodanese)
Chro_2603	PWY-5392	reductive TCA cycle II
Chro_2603	PWY-5537	pyruvate fermentation to acetate V
Chro_2603	PWY-5538	pyruvate fermentation to acetate VI
Chro_2603	PWY-5690	TCA cycle II (plants and fungi)
Chro_2603	PWY-5913	TCA cycle VI (obligate autotrophs)
Chro_2603	PWY-6728	methylaspartate cycle
Chro_2603	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Chro_2603	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Chro_2604	PWY-5392	reductive TCA cycle II
Chro_2604	PWY-5537	pyruvate fermentation to acetate V
Chro_2604	PWY-5538	pyruvate fermentation to acetate VI
Chro_2604	PWY-5690	TCA cycle II (plants and fungi)
Chro_2604	PWY-5913	TCA cycle VI (obligate autotrophs)
Chro_2604	PWY-6728	methylaspartate cycle
Chro_2604	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Chro_2604	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Chro_2606	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Chro_2608	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Chro_2608	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Chro_2613	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Chro_2613	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Chro_2622	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Chro_2645	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Chro_2645	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Chro_2657	PWY-6605	adenine and adenosine salvage II
Chro_2657	PWY-6610	adenine and adenosine salvage IV
Chro_2660	PWY-5917	phycocyanobilin biosynthesis
Chro_2696	PWY-4983	L-citrulline-nitric oxide cycle
Chro_2696	PWY-4984	urea cycle
Chro_2696	PWY-5	canavanine biosynthesis
Chro_2696	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Chro_2696	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Chro_2697	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Chro_2697	PWY-5686	UMP biosynthesis
Chro_2697	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Chro_2699	PWY-1622	formaldehyde assimilation I (serine pathway)
Chro_2699	PWY-5484	glycolysis II (from fructose 6-phosphate)
Chro_2764	PWY-3961	phosphopantothenate biosynthesis II
Chro_2769	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Chro_2769	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Chro_2769	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Chro_2769	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Chro_2782	PWY-1042	glycolysis IV (plant cytosol)
Chro_2782	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Chro_2782	PWY-5484	glycolysis II (from fructose 6-phosphate)
Chro_2782	PWY-7385	1,3-propanediol biosynthesis (engineered)
Chro_2785	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Chro_2785	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Chro_2786	PWY-1042	glycolysis IV (plant cytosol)
Chro_2786	PWY-1622	formaldehyde assimilation I (serine pathway)
Chro_2786	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Chro_2786	PWY-5484	glycolysis II (from fructose 6-phosphate)
Chro_2786	PWY-5723	Rubisco shunt
Chro_2786	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Chro_2786	PWY-6886	1-butanol autotrophic biosynthesis
Chro_2786	PWY-6901	superpathway of glucose and xylose degradation
Chro_2786	PWY-7003	glycerol degradation to butanol
Chro_2786	PWY-7124	ethylene biosynthesis V (engineered)
Chro_2786	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Chro_2787	PWY-5386	methylglyoxal degradation I
Chro_2806	PWY-5155	&beta;-alanine biosynthesis III
Chro_2807	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Chro_2807	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Chro_2807	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Chro_2807	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Chro_2820	PWY-7425	2-chloroacrylate degradation I
Chro_2827	PWY-6749	CMP-legionaminate biosynthesis I
Chro_2829	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Chro_2832	PWY-6910	hydroxymethylpyrimidine salvage
Chro_2832	PWY-7356	thiamin salvage IV (yeast)
Chro_2832	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Chro_2847	PWY-1042	glycolysis IV (plant cytosol)
Chro_2847	PWY-5484	glycolysis II (from fructose 6-phosphate)
Chro_2847	PWY-6901	superpathway of glucose and xylose degradation
Chro_2847	PWY-7003	glycerol degradation to butanol
Chro_2851	PWY-4202	arsenate detoxification I (glutaredoxin)
Chro_2851	PWY-4621	arsenate detoxification II (glutaredoxin)
Chro_2853	PWY-4202	arsenate detoxification I (glutaredoxin)
Chro_2880	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Chro_2880	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Chro_2891	PWY-4041	&gamma;-glutamyl cycle
Chro_2891	PWY-5826	hypoglycin biosynthesis
Chro_2902	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Chro_2902	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Chro_2902	PWY-5194	siroheme biosynthesis
Chro_2902	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Chro_2907	PWY-5839	menaquinol-7 biosynthesis
Chro_2907	PWY-5844	menaquinol-9 biosynthesis
Chro_2907	PWY-5849	menaquinol-6 biosynthesis
Chro_2907	PWY-5890	menaquinol-10 biosynthesis
Chro_2907	PWY-5891	menaquinol-11 biosynthesis
Chro_2907	PWY-5892	menaquinol-12 biosynthesis
Chro_2907	PWY-5895	menaquinol-13 biosynthesis
Chro_2913	PWY-1361	benzoyl-CoA degradation I (aerobic)
Chro_2913	PWY-5109	2-methylbutanoate biosynthesis
Chro_2913	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Chro_2913	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Chro_2913	PWY-5177	glutaryl-CoA degradation
Chro_2913	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Chro_2913	PWY-6435	4-hydroxybenzoate biosynthesis V
Chro_2913	PWY-6583	pyruvate fermentation to butanol I
Chro_2913	PWY-6863	pyruvate fermentation to hexanol
Chro_2913	PWY-6883	pyruvate fermentation to butanol II
Chro_2913	PWY-6944	androstenedione degradation
Chro_2913	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Chro_2913	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Chro_2913	PWY-7007	methyl ketone biosynthesis
Chro_2913	PWY-7046	4-coumarate degradation (anaerobic)
Chro_2913	PWY-7094	fatty acid salvage
Chro_2913	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Chro_2913	PWY-735	jasmonic acid biosynthesis
Chro_2913	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Chro_2925	PWY-5340	sulfate activation for sulfonation
Chro_2928	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
Chro_2929	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
Chro_2929	PWY-5389	3-methylthiopropanoate biosynthesis
Chro_2934	PWY-5386	methylglyoxal degradation I
Chro_2939	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Chro_2939	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Chro_2958	PWY-1042	glycolysis IV (plant cytosol)
Chro_2958	PWY-5484	glycolysis II (from fructose 6-phosphate)
Chro_2958	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Chro_2958	PWY-7003	glycerol degradation to butanol
Chro_2959	PWY-6614	tetrahydrofolate biosynthesis
Chro_2963	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Chro_2963	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Chro_2963	PWY-6269	adenosylcobalamin salvage from cobinamide II
Chro_2965	PWY-5381	pyridine nucleotide cycling (plants)
Chro_2965	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Chro_2965	PWY-6596	adenosine nucleotides degradation I
Chro_2965	PWY-6606	guanosine nucleotides degradation II
Chro_2965	PWY-6607	guanosine nucleotides degradation I
Chro_2965	PWY-6608	guanosine nucleotides degradation III
Chro_2965	PWY-7185	UTP and CTP dephosphorylation I
Chro_2976	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Chro_2976	PWY-7118	chitin degradation to ethanol
Chro_2978	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Chro_2978	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Chro_2978	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Chro_2978	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Chro_2978	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Chro_2978	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Chro_2978	PWY-7205	CMP phosphorylation
Chro_2978	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Chro_2978	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Chro_2978	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Chro_2978	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Chro_2978	PWY-7224	purine deoxyribonucleosides salvage
Chro_2978	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Chro_2978	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Chro_2979	PWY-40	putrescine biosynthesis I
Chro_2979	PWY-43	putrescine biosynthesis II
Chro_2979	PWY-6305	putrescine biosynthesis IV
Chro_2979	PWY-6834	spermidine biosynthesis III
Chro_2993	PWY-5686	UMP biosynthesis
Chro_3005	PWY-622	starch biosynthesis
Chro_3006	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Chro_3006	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Chro_3008	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Chro_3067	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Chro_3067	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Chro_3071	PWY-1622	formaldehyde assimilation I (serine pathway)
Chro_3071	PWY-181	photorespiration
Chro_3071	PWY-2161	folate polyglutamylation
Chro_3071	PWY-2201	folate transformations I
Chro_3071	PWY-3661	glycine betaine degradation I
Chro_3071	PWY-3661-1	glycine betaine degradation II (mammalian)
Chro_3071	PWY-3841	folate transformations II
Chro_3071	PWY-5497	purine nucleobases degradation II (anaerobic)
Chro_3074	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Chro_3074	PWY-6416	quinate degradation II
Chro_3074	PWY-6707	gallate biosynthesis
Chro_3077	PWY-6654	phosphopantothenate biosynthesis III
Chro_3082	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Chro_3083	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Chro_3083	PWY-5739	GDP-D-perosamine biosynthesis
Chro_3083	PWY-5740	GDP-L-colitose biosynthesis
Chro_3083	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Chro_3087	PWY-5269	cardiolipin biosynthesis II
Chro_3087	PWY-5668	cardiolipin biosynthesis I
Chro_3100	PWY-7158	L-phenylalanine degradation V
Chro_3127	PWY-6164	3-dehydroquinate biosynthesis I
Chro_3132	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Chro_3132	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Chro_3140	PWY-5958	acridone alkaloid biosynthesis
Chro_3140	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Chro_3140	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Chro_3144	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Chro_3144	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Chro_3144	PWY-6164	3-dehydroquinate biosynthesis I
Chro_3168	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Chro_3168	PWY-6578	8-amino-7-oxononanoate biosynthesis III
Chro_3168	PWY-7147	8-amino-7-oxononanoate biosynthesis II
Chro_3179	PWY-5663	tetrahydrobiopterin biosynthesis I
Chro_3179	PWY-5664	tetrahydrobiopterin biosynthesis II
Chro_3179	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Chro_3179	PWY-6703	preQ<sub>0</sub> biosynthesis
Chro_3179	PWY-6983	tetrahydrobiopterin biosynthesis III
Chro_3179	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Chro_3184	PWY-622	starch biosynthesis
Chro_3186	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
Chro_3199	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Chro_3199	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Chro_3205	PWY-1042	glycolysis IV (plant cytosol)
Chro_3205	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Chro_3205	PWY-5484	glycolysis II (from fructose 6-phosphate)
Chro_3205	PWY-5723	Rubisco shunt
Chro_3205	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Chro_3205	PWY-6886	1-butanol autotrophic biosynthesis
Chro_3205	PWY-6901	superpathway of glucose and xylose degradation
Chro_3205	PWY-7003	glycerol degradation to butanol
Chro_3205	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Chro_3205	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Chro_3235	PWY-101	photosynthesis light reactions
Chro_3235	PWY-6785	hydrogen production VIII
Chro_3298	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Chro_3298	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Chro_3298	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Chro_3298	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Chro_3318	PWY-6420	pyrroloquinoline quinone biosynthesis
Chro_3340	PWY-6502	oxidized GTP and dGTP detoxification
Chro_3356	PWY-6829	tRNA methylation (yeast)
Chro_3356	PWY-7285	methylwyosine biosynthesis
Chro_3356	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Chro_3357	PWY-7052	cyanophycin metabolism
Chro_3358	PWY-7052	cyanophycin metabolism
Chro_3365	PWY-3781	aerobic respiration I (cytochrome c)
Chro_3365	PWY-4521	arsenite oxidation I (respiratory)
Chro_3365	PWY-6692	Fe(II) oxidation
Chro_3365	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Chro_3371	PWY-6749	CMP-legionaminate biosynthesis I
Chro_3394	PWY-6823	molybdenum cofactor biosynthesis
Chro_3394	PWY-6891	thiazole biosynthesis II (Bacillus)
Chro_3394	PWY-6892	thiazole biosynthesis I (E. coli)
Chro_3394	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Chro_3425	PWY-7183	pyrimidine nucleobases salvage I
Chro_3433	PWY-2161	folate polyglutamylation
Chro_3460	PWY-4983	L-citrulline-nitric oxide cycle
Chro_3460	PWY-4984	urea cycle
Chro_3460	PWY-5	canavanine biosynthesis
Chro_3460	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Chro_3460	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Chro_3462	PWY-7560	methylerythritol phosphate pathway II
Chro_3464	PWY-5686	UMP biosynthesis
Chro_3472	PWY-7560	methylerythritol phosphate pathway II
Chro_3497	PWY-5316	nicotine biosynthesis
Chro_3497	PWY-7342	superpathway of nicotine biosynthesis
Chro_3544	PWY-6749	CMP-legionaminate biosynthesis I
Chro_3546	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Chro_3546	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Chro_3560	PWY-5751	phenylethanol biosynthesis
Chro_3562	PWY-6749	CMP-legionaminate biosynthesis I
Chro_3568	PWY-6683	sulfate reduction III (assimilatory)
Chro_3579	PWY-4061	glutathione-mediated detoxification I
Chro_3579	PWY-6842	glutathione-mediated detoxification II
Chro_3579	PWY-7112	4-hydroxy-2-nonenal detoxification
Chro_3579	PWY-7533	gliotoxin biosynthesis
Chro_3611	PWY-5386	methylglyoxal degradation I
Chro_3651	PWY-6012	acyl carrier protein metabolism I
Chro_3651	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Chro_3653	PWY-3461	L-tyrosine biosynthesis II
Chro_3653	PWY-3462	L-phenylalanine biosynthesis II
Chro_3653	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Chro_3653	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Chro_3653	PWY-5901	2,3-dihydroxybenzoate biosynthesis
Chro_3653	PWY-5958	acridone alkaloid biosynthesis
Chro_3653	PWY-6120	L-tyrosine biosynthesis III
Chro_3653	PWY-6406	salicylate biosynthesis I
Chro_3653	PWY-6627	salinosporamide A biosynthesis
Chro_3653	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Chro_3653	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Chro_3654	PWY-6012	acyl carrier protein metabolism I
Chro_3654	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Chro_3655	PWY-6936	seleno-amino acid biosynthesis
Chro_3655	PWY-7274	D-cycloserine biosynthesis
Chro_3656	PWY-4381	fatty acid biosynthesis initiation I
Chro_3699	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Chro_3699	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Chro_3790	PWY-5663	tetrahydrobiopterin biosynthesis I
Chro_3790	PWY-5664	tetrahydrobiopterin biosynthesis II
Chro_3790	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Chro_3790	PWY-6703	preQ<sub>0</sub> biosynthesis
Chro_3790	PWY-6983	tetrahydrobiopterin biosynthesis III
Chro_3790	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Chro_3885	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Chro_3885	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Chro_3954	PWY-4981	L-proline biosynthesis II (from arginine)
Chro_3954	PWY-4984	urea cycle
Chro_3954	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Chro_3973	PWY-6164	3-dehydroquinate biosynthesis I
Chro_3979	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Chro_3993	PWY-6871	3-methylbutanol biosynthesis
Chro_3998	PWY-5350	thiosulfate disproportionation III (rhodanese)
Chro_3999	PWY-5874	heme degradation
Chro_3999	PWY-5915	phycoerythrobilin biosynthesis I
Chro_3999	PWY-5917	phycocyanobilin biosynthesis
Chro_3999	PWY-7170	phytochromobilin biosynthesis
Chro_4015	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Chro_4015	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Chro_4015	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Chro_4027	PWY-101	photosynthesis light reactions
Chro_4027	PWY-6785	hydrogen production VIII
Chro_4050	PWY-3781	aerobic respiration I (cytochrome c)
Chro_4050	PWY-4521	arsenite oxidation I (respiratory)
Chro_4050	PWY-6692	Fe(II) oxidation
Chro_4050	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Chro_4053	PWY-5443	aminopropanol phosphate biosynthesis I
Chro_4084	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Chro_4084	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Chro_4084	PWY-5901	2,3-dihydroxybenzoate biosynthesis
Chro_4084	PWY-6406	salicylate biosynthesis I
Chro_4087	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Chro_4087	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Chro_4089	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Chro_4089	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Chro_4109	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Chro_4109	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Chro_4115	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Chro_4135	PWY-6167	flavin biosynthesis II (archaea)
Chro_4135	PWY-6168	flavin biosynthesis III (fungi)
Chro_4156	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Chro_4156	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Chro_4156	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Chro_4164	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
Chro_4164	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Chro_4165	PWY-6891	thiazole biosynthesis II (Bacillus)
Chro_4165	PWY-6892	thiazole biosynthesis I (E. coli)
Chro_4165	PWY-7560	methylerythritol phosphate pathway II
Chro_4168	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Chro_4168	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Chro_4168	PWY-6269	adenosylcobalamin salvage from cobinamide II
Chro_4179	PWY-5101	L-isoleucine biosynthesis II
Chro_4179	PWY-6871	3-methylbutanol biosynthesis
Chro_4181	PWY-6891	thiazole biosynthesis II (Bacillus)
Chro_4181	PWY-6892	thiazole biosynthesis I (E. coli)
Chro_4183	PWY-5101	L-isoleucine biosynthesis II
Chro_4183	PWY-5103	L-isoleucine biosynthesis III
Chro_4183	PWY-5104	L-isoleucine biosynthesis IV
Chro_4183	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Chro_4190	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Chro_4190	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Chro_4215	PWY-1281	sulfoacetaldehyde degradation I
Chro_4215	PWY-5482	pyruvate fermentation to acetate II
Chro_4215	PWY-5485	pyruvate fermentation to acetate IV
Chro_4215	PWY-5497	purine nucleobases degradation II (anaerobic)
Chro_4215	PWY-6637	sulfolactate degradation II
Chro_4221	PWY-3821	galactose degradation III
Chro_4221	PWY-6317	galactose degradation I (Leloir pathway)
Chro_4221	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Chro_4221	PWY-6527	stachyose degradation
Chro_4221	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Chro_4221	PWY-7344	UDP-D-galactose biosynthesis
Chro_4226	PWY-5497	purine nucleobases degradation II (anaerobic)
Chro_4226	PWY-6606	guanosine nucleotides degradation II
Chro_4226	PWY-6608	guanosine nucleotides degradation III
Chro_4226	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Chro_4232	PWY-5491	diethylphosphate degradation
Chro_4234	PWY-6700	queuosine biosynthesis
Chro_4248	PWY-621	sucrose degradation III (sucrose invertase)
Chro_4271	PWY-6854	ethylene biosynthesis III (microbes)
Chro_4298	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Chro_4328	PWY-6700	queuosine biosynthesis
Chro_4335	PWY-101	photosynthesis light reactions
Chro_4335	PWY-6785	hydrogen production VIII
Chro_4336	PWY-5198	factor 420 biosynthesis
Chro_4341	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Chro_4341	PWY-6855	chitin degradation I (archaea)
Chro_4341	PWY-6906	chitin derivatives degradation
Chro_4346	PWY-5964	guanylyl molybdenum cofactor biosynthesis
Chro_4350	PWY-6834	spermidine biosynthesis III
Chro_4361	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Chro_4372	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Chro_4390	PWY-6683	sulfate reduction III (assimilatory)
Chro_4407	PWY-1042	glycolysis IV (plant cytosol)
Chro_4407	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Chro_4407	PWY-5484	glycolysis II (from fructose 6-phosphate)
Chro_4407	PWY-7385	1,3-propanediol biosynthesis (engineered)
Chro_4461	PWY-6167	flavin biosynthesis II (archaea)
Chro_4461	PWY-6168	flavin biosynthesis III (fungi)
Chro_4461	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Chro_4469	PWY-6409	pyoverdine I biosynthesis
Chro_4469	PWY-6562	norspermidine biosynthesis
Chro_4469	PWY-761	rhizobactin 1021 biosynthesis
Chro_4491	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Chro_4491	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Chro_4492	PWY-6936	seleno-amino acid biosynthesis
Chro_4492	PWY-7274	D-cycloserine biosynthesis
Chro_4522	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Chro_4522	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Chro_4524	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Chro_4524	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Chro_4528	PWY-6475	<i>trans</i>-lycopene biosynthesis II (plants)
Chro_4529	PWY-7183	pyrimidine nucleobases salvage I
Chro_4534	PWY-4261	glycerol degradation I
Chro_4549	PWY-4202	arsenate detoxification I (glutaredoxin)
Chro_4549	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Chro_4549	PWY-6608	guanosine nucleotides degradation III
Chro_4549	PWY-6609	adenine and adenosine salvage III
Chro_4549	PWY-6611	adenine and adenosine salvage V
Chro_4549	PWY-6620	guanine and guanosine salvage
Chro_4549	PWY-6627	salinosporamide A biosynthesis
Chro_4549	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Chro_4549	PWY-7179	purine deoxyribonucleosides degradation I
Chro_4549	PWY-7179-1	purine deoxyribonucleosides degradation
Chro_4587	PWY-6823	molybdenum cofactor biosynthesis
Chro_4587	PWY-6891	thiazole biosynthesis II (Bacillus)
Chro_4587	PWY-6892	thiazole biosynthesis I (E. coli)
Chro_4587	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Chro_4589	PWY-6823	molybdenum cofactor biosynthesis
Chro_4590	PWY-6936	seleno-amino acid biosynthesis
Chro_4590	PWY-7274	D-cycloserine biosynthesis
Chro_4594	PWY-3081	L-lysine biosynthesis V
Chro_4594	PWY-6871	3-methylbutanol biosynthesis
Chro_4610	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Chro_4610	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Chro_4635	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Chro_4635	PWY-5739	GDP-D-perosamine biosynthesis
Chro_4635	PWY-5740	GDP-L-colitose biosynthesis
Chro_4635	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Chro_4642	PWY-3221	dTDP-L-rhamnose biosynthesis II
Chro_4642	PWY-6808	dTDP-D-forosamine biosynthesis
Chro_4642	PWY-6942	dTDP-D-desosamine biosynthesis
Chro_4642	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Chro_4642	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Chro_4642	PWY-6974	dTDP-L-olivose biosynthesis
Chro_4642	PWY-6976	dTDP-L-mycarose biosynthesis
Chro_4642	PWY-7104	dTDP-L-megosamine biosynthesis
Chro_4642	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Chro_4642	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Chro_4642	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Chro_4642	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Chro_4642	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Chro_4642	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Chro_4642	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Chro_4642	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Chro_4663	PWY-381	nitrate reduction II (assimilatory)
Chro_4663	PWY-5675	nitrate reduction V (assimilatory)
Chro_4663	PWY-6549	L-glutamine biosynthesis III
Chro_4663	PWY-6963	ammonia assimilation cycle I
Chro_4663	PWY-6964	ammonia assimilation cycle II
Chro_4666	PWY-3661	glycine betaine degradation I
Chro_4666	PWY-4722	creatinine degradation II
Chro_4670	PWY-6123	inosine-5'-phosphate biosynthesis I
Chro_4670	PWY-6124	inosine-5'-phosphate biosynthesis II
Chro_4670	PWY-7234	inosine-5'-phosphate biosynthesis III
Chro_4693	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Chro_4693	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Chro_4693	PWY-6164	3-dehydroquinate biosynthesis I
Chro_4703	PWY-5704	urea degradation II
Chro_4708	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Chro_4708	PWY-6855	chitin degradation I (archaea)
Chro_4708	PWY-6906	chitin derivatives degradation
Chro_4710	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Chro_4710	PWY-7177	UTP and CTP dephosphorylation II
Chro_4710	PWY-7185	UTP and CTP dephosphorylation I
Chro_4712	PWY-7560	methylerythritol phosphate pathway II
Chro_4725	PWY-5381	pyridine nucleotide cycling (plants)
Chro_4725	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Chro_4726	PWY-1042	glycolysis IV (plant cytosol)
Chro_4726	PWY-5484	glycolysis II (from fructose 6-phosphate)
Chro_4726	PWY-6901	superpathway of glucose and xylose degradation
Chro_4726	PWY-7003	glycerol degradation to butanol
Chro_4727	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Chro_4727	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Chro_4727	PWY-6896	thiamin salvage I
Chro_4727	PWY-6897	thiamin salvage II
Chro_4728	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Chro_4728	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Chro_4731	PWY-381	nitrate reduction II (assimilatory)
Chro_4731	PWY-5675	nitrate reduction V (assimilatory)
Chro_4731	PWY-6549	L-glutamine biosynthesis III
Chro_4731	PWY-6963	ammonia assimilation cycle I
Chro_4731	PWY-6964	ammonia assimilation cycle II
Chro_4754	PWY-5958	acridone alkaloid biosynthesis
Chro_4754	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Chro_4754	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Chro_4758	PWY-5941	glycogen degradation II (eukaryotic)
Chro_4758	PWY-6724	starch degradation II
Chro_4758	PWY-6737	starch degradation V
Chro_4758	PWY-7238	sucrose biosynthesis II
Chro_4779	PWY-5101	L-isoleucine biosynthesis II
Chro_4779	PWY-5103	L-isoleucine biosynthesis III
Chro_4779	PWY-5104	L-isoleucine biosynthesis IV
Chro_4779	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Chro_4779	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Chro_4779	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Chro_4779	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Chro_4782	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Chro_4782	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Chro_4792	PWY-5659	GDP-mannose biosynthesis
Chro_4792	PWY-6073	alginate biosynthesis I (algal)
Chro_4792	PWY-6082	alginate biosynthesis II (bacterial)
Chro_4792	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Chro_4841	PWY-2941	L-lysine biosynthesis II
Chro_4841	PWY-5097	L-lysine biosynthesis VI
Chro_4861	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Chro_4861	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Chro_4861	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Chro_4861	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Chro_4861	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Chro_4861	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Chro_4865	PWY-5686	UMP biosynthesis
Chro_4870	PWY-6854	ethylene biosynthesis III (microbes)
Chro_4872	PWY-7183	pyrimidine nucleobases salvage I
Chro_4878	PWY-1042	glycolysis IV (plant cytosol)
Chro_4878	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Chro_4878	PWY-5484	glycolysis II (from fructose 6-phosphate)
Chro_4878	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Chro_4878	PWY-7385	1,3-propanediol biosynthesis (engineered)
Chro_4893	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Chro_4894	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Chro_4901	PWY-5194	siroheme biosynthesis
Chro_4901	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Chro_4903	PWY-5988	wound-induced proteolysis I
Chro_4903	PWY-6018	seed germination protein turnover
Chro_4905	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Chro_4920	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Chro_4920	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Chro_4933	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Chro_4934	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Chro_4934	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Chro_4965	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Chro_4965	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Chro_4970	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Chro_4970	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Chro_4975	PWY-3781	aerobic respiration I (cytochrome c)
Chro_4975	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Chro_4975	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Chro_4975	PWY-5690	TCA cycle II (plants and fungi)
Chro_4975	PWY-6728	methylaspartate cycle
Chro_4975	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Chro_4975	PWY-7254	TCA cycle VII (acetate-producers)
Chro_4975	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Chro_4978	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Chro_4995	PWY-6599	guanine and guanosine salvage II
Chro_4995	PWY-6609	adenine and adenosine salvage III
Chro_4995	PWY-6610	adenine and adenosine salvage IV
Chro_4995	PWY-6620	guanine and guanosine salvage
Chro_4996	PWY-6610	adenine and adenosine salvage IV
Chro_5000	PWY-3801	sucrose degradation II (sucrose synthase)
Chro_5000	PWY-5054	sorbitol biosynthesis I
Chro_5000	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Chro_5000	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Chro_5000	PWY-5659	GDP-mannose biosynthesis
Chro_5000	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Chro_5000	PWY-621	sucrose degradation III (sucrose invertase)
Chro_5000	PWY-622	starch biosynthesis
Chro_5000	PWY-6531	mannitol cycle
Chro_5000	PWY-6981	chitin biosynthesis
Chro_5000	PWY-7238	sucrose biosynthesis II
Chro_5000	PWY-7347	sucrose biosynthesis III
Chro_5000	PWY-7385	1,3-propanediol biosynthesis (engineered)
Chro_5011	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Chro_5011	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Chro_5011	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Chro_5011	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Chro_5026	PWY-101	photosynthesis light reactions
Chro_5026	PWY-6785	hydrogen production VIII
Chro_5027	PWY-101	photosynthesis light reactions
Chro_5027	PWY-6785	hydrogen production VIII
Chro_5032	PWY-5386	methylglyoxal degradation I
Chro_5039	PWY-5386	methylglyoxal degradation I
Chro_5041	PWY-5941	glycogen degradation II (eukaryotic)
Chro_5041	PWY-622	starch biosynthesis
Chro_5041	PWY-6731	starch degradation III
Chro_5041	PWY-6737	starch degradation V
Chro_5041	PWY-7238	sucrose biosynthesis II
Chro_5071	PWY-6454	vancomycin resistance I
Chro_5071	PWY-6455	vancomycin resistance II
Chro_5088	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Chro_5088	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Chro_5088	PWY-6269	adenosylcobalamin salvage from cobinamide II
Chro_5093	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Chro_5093	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Chro_5093	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Chro_5093	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Chro_5109	PWY-5913	TCA cycle VI (obligate autotrophs)
Chro_5109	PWY-6549	L-glutamine biosynthesis III
Chro_5109	PWY-6728	methylaspartate cycle
Chro_5109	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Chro_5109	PWY-7124	ethylene biosynthesis V (engineered)
Chro_5109	PWY-7254	TCA cycle VII (acetate-producers)
Chro_5109	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Chro_5171	PWY-5659	GDP-mannose biosynthesis
Chro_5171	PWY-6073	alginate biosynthesis I (algal)
Chro_5171	PWY-6082	alginate biosynthesis II (bacterial)
Chro_5171	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Chro_5179	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Chro_5189	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Chro_5189	PWY-5723	Rubisco shunt
Chro_5193	PWY-4041	&gamma;-glutamyl cycle
Chro_5193	PWY-5826	hypoglycin biosynthesis
Chro_5195	PWY-5169	cyanurate degradation
Chro_5195	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Chro_5205	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Chro_5205	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Chro_5205	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Chro_5206	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Chro_5206	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Chro_5206	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Chro_5212	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Chro_5212	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Chro_5224	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Chro_5225	PWY-5194	siroheme biosynthesis
Chro_5225	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Chro_5229	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
Chro_5229	PWY-6853	ethylene biosynthesis II (microbes)
Chro_5229	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Chro_5234	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Chro_5239	PWY-3221	dTDP-L-rhamnose biosynthesis II
Chro_5239	PWY-6808	dTDP-D-forosamine biosynthesis
Chro_5239	PWY-6942	dTDP-D-desosamine biosynthesis
Chro_5239	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Chro_5239	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Chro_5239	PWY-6974	dTDP-L-olivose biosynthesis
Chro_5239	PWY-6976	dTDP-L-mycarose biosynthesis
Chro_5239	PWY-7104	dTDP-L-megosamine biosynthesis
Chro_5239	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Chro_5239	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Chro_5239	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Chro_5239	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Chro_5239	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Chro_5239	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Chro_5239	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Chro_5239	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Chro_5242	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Chro_5242	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Chro_5252	PWY-5068	chlorophyll cycle
Chro_5252	PWY-5086	chlorophyll <i>a</i> biosynthesis I
Chro_5254	PWY-40	putrescine biosynthesis I
Chro_5254	PWY-6305	putrescine biosynthesis IV
Chro_5264	PWY-5941	glycogen degradation II (eukaryotic)
Chro_5264	PWY-6724	starch degradation II
Chro_5264	PWY-6737	starch degradation V
Chro_5264	PWY-7238	sucrose biosynthesis II
Chro_5289	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Chro_5289	PWY-5686	UMP biosynthesis
Chro_5289	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Chro_5290	PWY-7052	cyanophycin metabolism
Chro_5294	PWY-5101	L-isoleucine biosynthesis II
Chro_5294	PWY-5103	L-isoleucine biosynthesis III
Chro_5294	PWY-5104	L-isoleucine biosynthesis IV
Chro_5294	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Chro_5298	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Chro_5298	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Chro_5312	PWY-6654	phosphopantothenate biosynthesis III
Chro_5313	PWY-5532	adenosine nucleotides degradation IV
Chro_5313	PWY-5723	Rubisco shunt
Chro_5315	PWY-5532	adenosine nucleotides degradation IV
Chro_5315	PWY-5723	Rubisco shunt
Chro_5317	PWY-5532	adenosine nucleotides degradation IV
Chro_5317	PWY-5723	Rubisco shunt
Chro_5323	PWY-3801	sucrose degradation II (sucrose synthase)
Chro_5333	PWY-2723	trehalose degradation V
Chro_5333	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Chro_5333	PWY-5661	GDP-glucose biosynthesis
Chro_5333	PWY-7238	sucrose biosynthesis II
Chro_5333	PWY-7385	1,3-propanediol biosynthesis (engineered)
Chro_5354	PWY-5686	UMP biosynthesis
Chro_5356	PWY-5686	UMP biosynthesis
Chro_5365	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Chro_5365	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Chro_5365	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Chro_5365	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Chro_5366	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Chro_5366	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Chro_5366	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Chro_5380	PWY-2941	L-lysine biosynthesis II
Chro_5380	PWY-2942	L-lysine biosynthesis III
Chro_5380	PWY-5097	L-lysine biosynthesis VI
Chro_5380	PWY-6559	spermidine biosynthesis II
Chro_5380	PWY-6562	norspermidine biosynthesis
Chro_5380	PWY-7153	grixazone biosynthesis
Chro_5384	PWY-4981	L-proline biosynthesis II (from arginine)
Chro_5388	PWY-4041	&gamma;-glutamyl cycle
Chro_5388	PWY-5826	hypoglycin biosynthesis
Chro_5389	PWY-6683	sulfate reduction III (assimilatory)
Chro_5405	PWY-5484	glycolysis II (from fructose 6-phosphate)
Chro_5406	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Chro_5424	PWY-6823	molybdenum cofactor biosynthesis
Chro_5468	PWY-2941	L-lysine biosynthesis II
Chro_5468	PWY-2942	L-lysine biosynthesis III
Chro_5468	PWY-5097	L-lysine biosynthesis VI
Chro_5473	PWY-6823	molybdenum cofactor biosynthesis
Chro_5489	PWY-5381	pyridine nucleotide cycling (plants)
Chro_5492	PWY-5316	nicotine biosynthesis
Chro_5492	PWY-7342	superpathway of nicotine biosynthesis
Chro_5498	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Chro_5498	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Chro_5501	PWY-5704	urea degradation II
Chro_5502	PWY-5704	urea degradation II
Chro_5510	PWY-6123	inosine-5'-phosphate biosynthesis I
Chro_5510	PWY-7234	inosine-5'-phosphate biosynthesis III
Chro_5511	PWY-6906	chitin derivatives degradation
Chro_5511	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Chro_5511	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Chro_5512	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Chro_5512	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Chro_5515	PWY-5642	2,4-dinitrotoluene degradation
Chro_5515	PWY-6373	acrylate degradation
Chro_5518	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Chro_5518	PWY-7205	CMP phosphorylation
Chro_5520	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Chro_5520	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Chro_5520	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Chro_5566	PWY-7039	phosphatidate metabolism, as a signaling molecule
Chro_5567	PWY-5958	acridone alkaloid biosynthesis
Chro_5567	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Chro_5567	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Chro_5571	PWY-6168	flavin biosynthesis III (fungi)
Chro_5571	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Chro_5573	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Chro_5573	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Chro_5581	PWY-5663	tetrahydrobiopterin biosynthesis I
Chro_5581	PWY-5664	tetrahydrobiopterin biosynthesis II
Chro_5581	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Chro_5581	PWY-6703	preQ<sub>0</sub> biosynthesis
Chro_5581	PWY-6983	tetrahydrobiopterin biosynthesis III
Chro_5581	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Chro_5595	PWY-6936	seleno-amino acid biosynthesis
Chro_5597	PWY-5316	nicotine biosynthesis
Chro_5597	PWY-5381	pyridine nucleotide cycling (plants)
Chro_5597	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Chro_5597	PWY-7342	superpathway of nicotine biosynthesis