CKO_00003	PWY-7130	L-glucose degradation
CKO_00004	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CKO_00004	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CKO_00004	PWY-7242	D-fructuronate degradation
CKO_00004	PWY-7310	D-glucosaminate degradation
CKO_00011	PWY-5101	L-isoleucine biosynthesis II
CKO_00011	PWY-5103	L-isoleucine biosynthesis III
CKO_00011	PWY-5104	L-isoleucine biosynthesis IV
CKO_00011	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CKO_00011	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CKO_00011	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CKO_00011	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKO_00013	PWY-5101	L-isoleucine biosynthesis II
CKO_00013	PWY-5103	L-isoleucine biosynthesis III
CKO_00013	PWY-5104	L-isoleucine biosynthesis IV
CKO_00013	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CKO_00013	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CKO_00013	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CKO_00013	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKO_00029	PWY-7310	D-glucosaminate degradation
CKO_00056	PWY-6012	acyl carrier protein metabolism I
CKO_00056	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CKO_00066	PWY-6749	CMP-legionaminate biosynthesis I
CKO_00067	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CKO_00070	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CKO_00073	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CKO_00107	PWY-5101	L-isoleucine biosynthesis II
CKO_00107	PWY-5103	L-isoleucine biosynthesis III
CKO_00107	PWY-5104	L-isoleucine biosynthesis IV
CKO_00107	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CKO_00107	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CKO_00107	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CKO_00107	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKO_00109	PWY-5057	L-valine degradation II
CKO_00109	PWY-5076	L-leucine degradation III
CKO_00109	PWY-5078	L-isoleucine degradation II
CKO_00109	PWY-5101	L-isoleucine biosynthesis II
CKO_00109	PWY-5103	L-isoleucine biosynthesis III
CKO_00109	PWY-5104	L-isoleucine biosynthesis IV
CKO_00109	PWY-5108	L-isoleucine biosynthesis V
CKO_00110	PWY-5101	L-isoleucine biosynthesis II
CKO_00110	PWY-5103	L-isoleucine biosynthesis III
CKO_00110	PWY-5104	L-isoleucine biosynthesis IV
CKO_00110	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKO_00113	PWY-5101	L-isoleucine biosynthesis II
CKO_00113	PWY-5103	L-isoleucine biosynthesis III
CKO_00113	PWY-5104	L-isoleucine biosynthesis IV
CKO_00113	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKO_00118	PWY-4202	arsenate detoxification I (glutaredoxin)
CKO_00118	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CKO_00118	PWY-6608	guanosine nucleotides degradation III
CKO_00118	PWY-6609	adenine and adenosine salvage III
CKO_00118	PWY-6611	adenine and adenosine salvage V
CKO_00118	PWY-6620	guanine and guanosine salvage
CKO_00118	PWY-6627	salinosporamide A biosynthesis
CKO_00118	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
CKO_00118	PWY-7179	purine deoxyribonucleosides degradation I
CKO_00118	PWY-7179-1	purine deoxyribonucleosides degradation
CKO_00124	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CKO_00125	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKO_00125	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CKO_00125	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKO_00125	PWY-7290	<i>Escherichia coli</i> serotype O86 <i>O</i>-antigen biosynthesis
CKO_00125	PWY-7530	&beta;-D-galactosaminyl-(1&rarr;3)-<i>N</i>-acetyl-&alpha;-D-galactosamine biosynthesis
CKO_00127	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
CKO_00129	PWY-3221	dTDP-L-rhamnose biosynthesis II
CKO_00129	PWY-6808	dTDP-D-forosamine biosynthesis
CKO_00129	PWY-6942	dTDP-D-desosamine biosynthesis
CKO_00129	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CKO_00129	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CKO_00129	PWY-6974	dTDP-L-olivose biosynthesis
CKO_00129	PWY-6976	dTDP-L-mycarose biosynthesis
CKO_00129	PWY-7104	dTDP-L-megosamine biosynthesis
CKO_00129	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CKO_00129	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CKO_00129	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CKO_00129	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CKO_00129	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CKO_00129	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CKO_00129	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CKO_00129	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CKO_00130	PWY-3221	dTDP-L-rhamnose biosynthesis II
CKO_00130	PWY-6808	dTDP-D-forosamine biosynthesis
CKO_00130	PWY-6942	dTDP-D-desosamine biosynthesis
CKO_00130	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CKO_00130	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CKO_00130	PWY-6974	dTDP-L-olivose biosynthesis
CKO_00130	PWY-6976	dTDP-L-mycarose biosynthesis
CKO_00130	PWY-7104	dTDP-L-megosamine biosynthesis
CKO_00130	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CKO_00130	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CKO_00130	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CKO_00130	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CKO_00130	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CKO_00130	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CKO_00130	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CKO_00130	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CKO_00131	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CKO_00132	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CKO_00146	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CKO_00146	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CKO_00147	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CKO_00147	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CKO_00151	PWY-2941	L-lysine biosynthesis II
CKO_00151	PWY-5097	L-lysine biosynthesis VI
CKO_00160	PWY-6803	phosphatidylcholine acyl editing
CKO_00160	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
CKO_00160	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
CKO_00160	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
CKO_00171	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CKO_00171	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CKO_00171	PWY-6936	seleno-amino acid biosynthesis
CKO_00171	PWY-702	L-methionine biosynthesis II
CKO_00173	PWY-4202	arsenate detoxification I (glutaredoxin)
CKO_00173	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CKO_00173	PWY-6608	guanosine nucleotides degradation III
CKO_00173	PWY-6609	adenine and adenosine salvage III
CKO_00173	PWY-6611	adenine and adenosine salvage V
CKO_00173	PWY-6620	guanine and guanosine salvage
CKO_00173	PWY-6627	salinosporamide A biosynthesis
CKO_00173	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
CKO_00173	PWY-7179	purine deoxyribonucleosides degradation I
CKO_00173	PWY-7179-1	purine deoxyribonucleosides degradation
CKO_00176	PWY-5839	menaquinol-7 biosynthesis
CKO_00176	PWY-5844	menaquinol-9 biosynthesis
CKO_00176	PWY-5849	menaquinol-6 biosynthesis
CKO_00176	PWY-5890	menaquinol-10 biosynthesis
CKO_00176	PWY-5891	menaquinol-11 biosynthesis
CKO_00176	PWY-5892	menaquinol-12 biosynthesis
CKO_00176	PWY-5895	menaquinol-13 biosynthesis
CKO_00187	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CKO_00187	PWY-6435	4-hydroxybenzoate biosynthesis V
CKO_00187	PWY-6863	pyruvate fermentation to hexanol
CKO_00187	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CKO_00187	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CKO_00187	PWY-6948	sitosterol degradation to androstenedione
CKO_00187	PWY-7094	fatty acid salvage
CKO_00187	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
CKO_00187	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
CKO_00187	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
CKO_00187	PWY-7339	10-<i>trans</i>-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
CKO_00187	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
CKO_00187	PWY-735	jasmonic acid biosynthesis
CKO_00188	PWY-1361	benzoyl-CoA degradation I (aerobic)
CKO_00188	PWY-5109	2-methylbutanoate biosynthesis
CKO_00188	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CKO_00188	PWY-5137	fatty acid &beta;-oxidation III (unsaturated, odd number)
CKO_00188	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CKO_00188	PWY-5177	glutaryl-CoA degradation
CKO_00188	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKO_00188	PWY-6435	4-hydroxybenzoate biosynthesis V
CKO_00188	PWY-6583	pyruvate fermentation to butanol I
CKO_00188	PWY-6837	fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)
CKO_00188	PWY-6863	pyruvate fermentation to hexanol
CKO_00188	PWY-6883	pyruvate fermentation to butanol II
CKO_00188	PWY-6944	androstenedione degradation
CKO_00188	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CKO_00188	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CKO_00188	PWY-7007	methyl ketone biosynthesis
CKO_00188	PWY-7046	4-coumarate degradation (anaerobic)
CKO_00188	PWY-7094	fatty acid salvage
CKO_00188	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CKO_00188	PWY-7291	oleate &beta;-oxidation (isomerase-dependent, yeast)
CKO_00188	PWY-735	jasmonic acid biosynthesis
CKO_00188	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CKO_00199	PWY-5269	cardiolipin biosynthesis II
CKO_00199	PWY-5668	cardiolipin biosynthesis I
CKO_00200	PWY-5392	reductive TCA cycle II
CKO_00200	PWY-5537	pyruvate fermentation to acetate V
CKO_00200	PWY-5538	pyruvate fermentation to acetate VI
CKO_00200	PWY-5690	TCA cycle II (plants and fungi)
CKO_00200	PWY-5913	TCA cycle VI (obligate autotrophs)
CKO_00200	PWY-6728	methylaspartate cycle
CKO_00200	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKO_00200	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CKO_00208	PWY-5316	nicotine biosynthesis
CKO_00208	PWY-7342	superpathway of nicotine biosynthesis
CKO_00219	PWY-6012	acyl carrier protein metabolism I
CKO_00219	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CKO_00223	PWY-5269	cardiolipin biosynthesis II
CKO_00223	PWY-5668	cardiolipin biosynthesis I
CKO_00226	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CKO_00226	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CKO_00226	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CKO_00237	PWY-1622	formaldehyde assimilation I (serine pathway)
CKO_00237	PWY-181	photorespiration
CKO_00237	PWY-2161	folate polyglutamylation
CKO_00237	PWY-2201	folate transformations I
CKO_00237	PWY-3661	glycine betaine degradation I
CKO_00237	PWY-3661-1	glycine betaine degradation II (mammalian)
CKO_00237	PWY-3841	folate transformations II
CKO_00237	PWY-5497	purine nucleobases degradation II (anaerobic)
CKO_00248	PWY-2301	<i>myo</i>-inositol biosynthesis
CKO_00248	PWY-4702	phytate degradation I
CKO_00248	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
CKO_00251	PWY-6823	molybdenum cofactor biosynthesis
CKO_00251	PWY-6891	thiazole biosynthesis II (Bacillus)
CKO_00251	PWY-6892	thiazole biosynthesis I (E. coli)
CKO_00251	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CKO_00258	PWY-5988	wound-induced proteolysis I
CKO_00258	PWY-6018	seed germination protein turnover
CKO_00261	PWY-5350	thiosulfate disproportionation III (rhodanese)
CKO_00265	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CKO_00265	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CKO_00265	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CKO_00265	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKO_00265	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CKO_00265	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CKO_00265	PWY-7205	CMP phosphorylation
CKO_00265	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CKO_00265	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKO_00265	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CKO_00265	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKO_00265	PWY-7224	purine deoxyribonucleosides salvage
CKO_00265	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CKO_00265	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CKO_00270	PWY-7560	methylerythritol phosphate pathway II
CKO_00279	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CKO_00279	PWY-6596	adenosine nucleotides degradation I
CKO_00279	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CKO_00280	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CKO_00289	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CKO_00289	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CKO_00291	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CKO_00291	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CKO_00291	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CKO_00293	PWY-7183	pyrimidine nucleobases salvage I
CKO_00296	PWY-5988	wound-induced proteolysis I
CKO_00296	PWY-6018	seed germination protein turnover
CKO_00298	PWY-7310	D-glucosaminate degradation
CKO_00299	PWY-7310	D-glucosaminate degradation
CKO_00301	PWY-4202	arsenate detoxification I (glutaredoxin)
CKO_00301	PWY-4621	arsenate detoxification II (glutaredoxin)
CKO_00309	PWY-2941	L-lysine biosynthesis II
CKO_00309	PWY-2942	L-lysine biosynthesis III
CKO_00309	PWY-5097	L-lysine biosynthesis VI
CKO_00311	PWY-6123	inosine-5'-phosphate biosynthesis I
CKO_00311	PWY-6124	inosine-5'-phosphate biosynthesis II
CKO_00311	PWY-7234	inosine-5'-phosphate biosynthesis III
CKO_00329	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CKO_00329	PWY-5723	Rubisco shunt
CKO_00329	PWY-6891	thiazole biosynthesis II (Bacillus)
CKO_00329	PWY-6892	thiazole biosynthesis I (E. coli)
CKO_00329	PWY-6901	superpathway of glucose and xylose degradation
CKO_00329	PWY-7560	methylerythritol phosphate pathway II
CKO_00330	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CKO_00330	PWY-5723	Rubisco shunt
CKO_00332	PWY-1281	sulfoacetaldehyde degradation I
CKO_00332	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CKO_00332	PWY-5482	pyruvate fermentation to acetate II
CKO_00332	PWY-5485	pyruvate fermentation to acetate IV
CKO_00332	PWY-5497	purine nucleobases degradation II (anaerobic)
CKO_00332	PWY-6637	sulfolactate degradation II
CKO_00332	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CKO_00336	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CKO_00336	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CKO_00336	PWY-6268	adenosylcobalamin salvage from cobalamin
CKO_00336	PWY-6269	adenosylcobalamin salvage from cobinamide II
CKO_00337	PWY-1281	sulfoacetaldehyde degradation I
CKO_00337	PWY-5482	pyruvate fermentation to acetate II
CKO_00337	PWY-5485	pyruvate fermentation to acetate IV
CKO_00337	PWY-5497	purine nucleobases degradation II (anaerobic)
CKO_00337	PWY-6637	sulfolactate degradation II
CKO_00350	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CKO_00350	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CKO_00358	PWY-7310	D-glucosaminate degradation
CKO_00369	PWY-6936	seleno-amino acid biosynthesis
CKO_00372	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CKO_00372	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CKO_00379	PWY-6936	seleno-amino acid biosynthesis
CKO_00389	PWY-4202	arsenate detoxification I (glutaredoxin)
CKO_00389	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CKO_00389	PWY-6608	guanosine nucleotides degradation III
CKO_00389	PWY-6609	adenine and adenosine salvage III
CKO_00389	PWY-6611	adenine and adenosine salvage V
CKO_00389	PWY-6620	guanine and guanosine salvage
CKO_00389	PWY-6627	salinosporamide A biosynthesis
CKO_00389	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
CKO_00389	PWY-7179	purine deoxyribonucleosides degradation I
CKO_00389	PWY-7179-1	purine deoxyribonucleosides degradation
CKO_00396	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CKO_00412	PWY-2723	trehalose degradation V
CKO_00412	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CKO_00412	PWY-5661	GDP-glucose biosynthesis
CKO_00412	PWY-7238	sucrose biosynthesis II
CKO_00412	PWY-7385	1,3-propanediol biosynthesis (engineered)
CKO_00413	PWY-7310	D-glucosaminate degradation
CKO_00414	PWY-7310	D-glucosaminate degradation
CKO_00435	PWY-1042	glycolysis IV (plant cytosol)
CKO_00435	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKO_00435	PWY-6901	superpathway of glucose and xylose degradation
CKO_00435	PWY-7003	glycerol degradation to butanol
CKO_00439	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
CKO_00448	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CKO_00448	PWY-6435	4-hydroxybenzoate biosynthesis V
CKO_00448	PWY-6863	pyruvate fermentation to hexanol
CKO_00448	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CKO_00448	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CKO_00448	PWY-6948	sitosterol degradation to androstenedione
CKO_00448	PWY-7094	fatty acid salvage
CKO_00448	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
CKO_00448	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
CKO_00448	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
CKO_00448	PWY-7339	10-<i>trans</i>-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
CKO_00448	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
CKO_00448	PWY-735	jasmonic acid biosynthesis
CKO_00449	PWY-1361	benzoyl-CoA degradation I (aerobic)
CKO_00449	PWY-5109	2-methylbutanoate biosynthesis
CKO_00449	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CKO_00449	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CKO_00449	PWY-5177	glutaryl-CoA degradation
CKO_00449	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKO_00449	PWY-6435	4-hydroxybenzoate biosynthesis V
CKO_00449	PWY-6583	pyruvate fermentation to butanol I
CKO_00449	PWY-6863	pyruvate fermentation to hexanol
CKO_00449	PWY-6883	pyruvate fermentation to butanol II
CKO_00449	PWY-6944	androstenedione degradation
CKO_00449	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CKO_00449	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CKO_00449	PWY-7007	methyl ketone biosynthesis
CKO_00449	PWY-7046	4-coumarate degradation (anaerobic)
CKO_00449	PWY-7094	fatty acid salvage
CKO_00449	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CKO_00449	PWY-735	jasmonic acid biosynthesis
CKO_00449	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CKO_00456	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CKO_00467	PWY-2941	L-lysine biosynthesis II
CKO_00467	PWY-2942	L-lysine biosynthesis III
CKO_00467	PWY-5097	L-lysine biosynthesis VI
CKO_00467	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKO_00467	PWY-6559	spermidine biosynthesis II
CKO_00467	PWY-6562	norspermidine biosynthesis
CKO_00467	PWY-7153	grixazone biosynthesis
CKO_00467	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CKO_00470	PWY-4381	fatty acid biosynthesis initiation I
CKO_00470	PWY-5743	3-hydroxypropanoate cycle
CKO_00470	PWY-5744	glyoxylate assimilation
CKO_00470	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKO_00470	PWY-6679	jadomycin biosynthesis
CKO_00470	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CKO_00471	PWY-2161	folate polyglutamylation
CKO_00474	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CKO_00474	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CKO_00474	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CKO_00474	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CKO_00484	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CKO_00484	PWY-6148	tetrahydromethanopterin biosynthesis
CKO_00484	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CKO_00484	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CKO_00490	PWY-7310	D-glucosaminate degradation
CKO_00492	PWY-6891	thiazole biosynthesis II (Bacillus)
CKO_00492	PWY-6892	thiazole biosynthesis I (E. coli)
CKO_00492	PWY-7560	methylerythritol phosphate pathway II
CKO_00497	PWY-1281	sulfoacetaldehyde degradation I
CKO_00497	PWY-5482	pyruvate fermentation to acetate II
CKO_00497	PWY-5485	pyruvate fermentation to acetate IV
CKO_00497	PWY-5497	purine nucleobases degradation II (anaerobic)
CKO_00497	PWY-6637	sulfolactate degradation II
CKO_00498	PWY-5482	pyruvate fermentation to acetate II
CKO_00498	PWY-5485	pyruvate fermentation to acetate IV
CKO_00498	PWY-5497	purine nucleobases degradation II (anaerobic)
CKO_00525	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
CKO_00525	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CKO_00525	PWY-5901	2,3-dihydroxybenzoate biosynthesis
CKO_00525	PWY-6406	salicylate biosynthesis I
CKO_00526	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
CKO_00526	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CKO_00527	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
CKO_00527	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CKO_00528	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
CKO_00528	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CKO_00529	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
CKO_00529	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CKO_00530	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
CKO_00530	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CKO_00531	PWY-5506	methanol oxidation to formaldehyde IV
CKO_00535	PWY-4261	glycerol degradation I
CKO_00535	PWY-6118	glycerol-3-phosphate shuttle
CKO_00535	PWY-6952	glycerophosphodiester degradation
CKO_00536	PWY-4261	glycerol degradation I
CKO_00536	PWY-6118	glycerol-3-phosphate shuttle
CKO_00536	PWY-6952	glycerophosphodiester degradation
CKO_00540	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CKO_00540	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CKO_00540	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CKO_00540	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CKO_00540	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKO_00540	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKO_00540	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CKO_00540	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CKO_00541	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CKO_00541	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CKO_00541	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CKO_00541	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CKO_00541	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKO_00541	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKO_00541	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CKO_00541	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CKO_00542	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
CKO_00542	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
CKO_00542	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
CKO_00542	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
CKO_00542	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
CKO_00542	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
CKO_00542	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
CKO_00542	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
CKO_00542	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
CKO_00542	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
CKO_00565	PWY-7254	TCA cycle VII (acetate-producers)
CKO_00609	PWY-7242	D-fructuronate degradation
CKO_00615	PWY-7310	D-glucosaminate degradation
CKO_00617	PWY-6019	pseudouridine degradation
CKO_00636	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CKO_00638	PWY-5663	tetrahydrobiopterin biosynthesis I
CKO_00638	PWY-5664	tetrahydrobiopterin biosynthesis II
CKO_00638	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CKO_00638	PWY-6703	preQ<sub>0</sub> biosynthesis
CKO_00638	PWY-6983	tetrahydrobiopterin biosynthesis III
CKO_00638	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CKO_00646	PWY-6556	pyrimidine ribonucleosides salvage II
CKO_00646	PWY-7181	pyrimidine deoxyribonucleosides degradation
CKO_00646	PWY-7193	pyrimidine ribonucleosides salvage I
CKO_00646	PWY-7199	pyrimidine deoxyribonucleosides salvage
CKO_00661	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKO_00661	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKO_00661	PWY-6454	vancomycin resistance I
CKO_00661	PWY-6901	superpathway of glucose and xylose degradation
CKO_00680	PWY-6897	thiamin salvage II
CKO_00680	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
CKO_00680	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CKO_00681	PWY-6910	hydroxymethylpyrimidine salvage
CKO_00681	PWY-7356	thiamin salvage IV (yeast)
CKO_00681	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CKO_00688	PWY-4261	glycerol degradation I
CKO_00693	PWY-4261	glycerol degradation I
CKO_00715	PWY-7193	pyrimidine ribonucleosides salvage I
CKO_00716	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKO_00727	PWY-6936	seleno-amino acid biosynthesis
CKO_00727	PWY-7274	D-cycloserine biosynthesis
CKO_00732	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
CKO_00732	PWY-5739	GDP-D-perosamine biosynthesis
CKO_00732	PWY-5740	GDP-L-colitose biosynthesis
CKO_00732	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
CKO_00733	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
CKO_00736	PWY-5659	GDP-mannose biosynthesis
CKO_00736	PWY-6073	alginate biosynthesis I (algal)
CKO_00736	PWY-6082	alginate biosynthesis II (bacterial)
CKO_00736	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CKO_00737	PWY-6749	CMP-legionaminate biosynthesis I
CKO_00738	PWY-6655	xanthan biosynthesis
CKO_00738	PWY-6658	acetan biosynthesis
CKO_00745	PWY-3801	sucrose degradation II (sucrose synthase)
CKO_00745	PWY-6527	stachyose degradation
CKO_00745	PWY-6981	chitin biosynthesis
CKO_00745	PWY-7238	sucrose biosynthesis II
CKO_00745	PWY-7343	UDP-glucose biosynthesis
CKO_00754	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CKO_00754	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CKO_00757	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
CKO_00774	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKO_00774	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKO_00779	PWY-5437	L-threonine degradation I
CKO_00779	PWY-5482	pyruvate fermentation to acetate II
CKO_00779	PWY-5485	pyruvate fermentation to acetate IV
CKO_00779	PWY-5497	purine nucleobases degradation II (anaerobic)
CKO_00779	PWY-7013	L-1,2-propanediol degradation
CKO_00786	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CKO_00786	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CKO_00786	PWY-6268	adenosylcobalamin salvage from cobalamin
CKO_00786	PWY-6269	adenosylcobalamin salvage from cobinamide II
CKO_00789	PWY-5437	L-threonine degradation I
CKO_00789	PWY-7013	L-1,2-propanediol degradation
CKO_00794	PWY-7013	L-1,2-propanediol degradation
CKO_00795	PWY-7013	L-1,2-propanediol degradation
CKO_00806	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CKO_00808	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CKO_00809	PWY-5194	siroheme biosynthesis
CKO_00809	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CKO_00810	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CKO_00813	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CKO_00814	PWY-5194	siroheme biosynthesis
CKO_00814	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CKO_00820	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CKO_00820	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CKO_00820	PWY-6269	adenosylcobalamin salvage from cobinamide II
CKO_00821	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CKO_00821	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CKO_00821	PWY-6269	adenosylcobalamin salvage from cobinamide II
CKO_00822	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CKO_00822	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CKO_00822	PWY-6269	adenosylcobalamin salvage from cobinamide II
CKO_00830	PWY-6840	homoglutathione biosynthesis
CKO_00830	PWY-7255	ergothioneine biosynthesis I (bacteria)
CKO_00848	PWY-6617	adenosine nucleotides degradation III
CKO_00857	PWY-6012	acyl carrier protein metabolism I
CKO_00857	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CKO_00862	PWY-1361	benzoyl-CoA degradation I (aerobic)
CKO_00862	PWY-5109	2-methylbutanoate biosynthesis
CKO_00862	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CKO_00862	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CKO_00862	PWY-5177	glutaryl-CoA degradation
CKO_00862	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKO_00862	PWY-6435	4-hydroxybenzoate biosynthesis V
CKO_00862	PWY-6583	pyruvate fermentation to butanol I
CKO_00862	PWY-6863	pyruvate fermentation to hexanol
CKO_00862	PWY-6883	pyruvate fermentation to butanol II
CKO_00862	PWY-6944	androstenedione degradation
CKO_00862	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CKO_00862	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CKO_00862	PWY-7007	methyl ketone biosynthesis
CKO_00862	PWY-7046	4-coumarate degradation (anaerobic)
CKO_00862	PWY-7094	fatty acid salvage
CKO_00862	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CKO_00862	PWY-735	jasmonic acid biosynthesis
CKO_00862	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CKO_00871	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CKO_00916	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
CKO_00916	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CKO_00916	PWY-5901	2,3-dihydroxybenzoate biosynthesis
CKO_00916	PWY-6406	salicylate biosynthesis I
CKO_00933	PWY-5663	tetrahydrobiopterin biosynthesis I
CKO_00933	PWY-5664	tetrahydrobiopterin biosynthesis II
CKO_00933	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CKO_00933	PWY-6703	preQ<sub>0</sub> biosynthesis
CKO_00933	PWY-6983	tetrahydrobiopterin biosynthesis III
CKO_00933	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CKO_00943	PWY-5686	UMP biosynthesis
CKO_00944	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CKO_00944	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CKO_01002	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CKO_01011	PWY-842	starch degradation I
CKO_01033	PWY-5269	cardiolipin biosynthesis II
CKO_01033	PWY-5668	cardiolipin biosynthesis I
CKO_01110	PWY-1042	glycolysis IV (plant cytosol)
CKO_01110	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CKO_01110	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKO_01110	PWY-5723	Rubisco shunt
CKO_01110	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CKO_01110	PWY-6886	1-butanol autotrophic biosynthesis
CKO_01110	PWY-6901	superpathway of glucose and xylose degradation
CKO_01110	PWY-7003	glycerol degradation to butanol
CKO_01110	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CKO_01110	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKO_01113	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CKO_01115	PWY-5101	L-isoleucine biosynthesis II
CKO_01115	PWY-5103	L-isoleucine biosynthesis III
CKO_01115	PWY-5104	L-isoleucine biosynthesis IV
CKO_01115	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKO_01116	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CKO_01116	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CKO_01116	PWY-7242	D-fructuronate degradation
CKO_01116	PWY-7310	D-glucosaminate degradation
CKO_01161	PWY-7310	D-glucosaminate degradation
CKO_01168	PWY-5958	acridone alkaloid biosynthesis
CKO_01168	PWY-6543	4-aminobenzoate biosynthesis
CKO_01168	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CKO_01168	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CKO_01168	PWY-6722	candicidin biosynthesis
CKO_01194	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKO_01204	PWY-5381	pyridine nucleotide cycling (plants)
CKO_01232	PWY-6823	molybdenum cofactor biosynthesis
CKO_01253	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
CKO_01253	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CKO_01253	PWY-5901	2,3-dihydroxybenzoate biosynthesis
CKO_01253	PWY-6406	salicylate biosynthesis I
CKO_01263	PWY-3781	aerobic respiration I (cytochrome c)
CKO_01263	PWY-6692	Fe(II) oxidation
CKO_01263	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
CKO_01263	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CKO_01272	PWY-7560	methylerythritol phosphate pathway II
CKO_01274	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CKO_01279	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CKO_01279	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CKO_01293	PWY-6683	sulfate reduction III (assimilatory)
CKO_01310	PWY-2201	folate transformations I
CKO_01310	PWY-5497	purine nucleobases degradation II (anaerobic)
CKO_01314	PWY-3801	sucrose degradation II (sucrose synthase)
CKO_01314	PWY-6527	stachyose degradation
CKO_01314	PWY-6981	chitin biosynthesis
CKO_01314	PWY-7238	sucrose biosynthesis II
CKO_01314	PWY-7343	UDP-glucose biosynthesis
CKO_01317	PWY-7199	pyrimidine deoxyribonucleosides salvage
CKO_01318	PWY-3162	L-tryptophan degradation V (side chain pathway)
CKO_01318	PWY-5057	L-valine degradation II
CKO_01318	PWY-5076	L-leucine degradation III
CKO_01318	PWY-5078	L-isoleucine degradation II
CKO_01318	PWY-5079	L-phenylalanine degradation III
CKO_01318	PWY-5082	L-methionine degradation III
CKO_01318	PWY-5162	2-oxopentenoate degradation
CKO_01318	PWY-5436	L-threonine degradation IV
CKO_01318	PWY-5480	pyruvate fermentation to ethanol I
CKO_01318	PWY-5486	pyruvate fermentation to ethanol II
CKO_01318	PWY-5751	phenylethanol biosynthesis
CKO_01318	PWY-6028	acetoin degradation
CKO_01318	PWY-6313	serotonin degradation
CKO_01318	PWY-6333	acetaldehyde biosynthesis I
CKO_01318	PWY-6342	noradrenaline and adrenaline degradation
CKO_01318	PWY-6587	pyruvate fermentation to ethanol III
CKO_01318	PWY-6802	salidroside biosynthesis
CKO_01318	PWY-6871	3-methylbutanol biosynthesis
CKO_01318	PWY-7013	L-1,2-propanediol degradation
CKO_01318	PWY-7085	triethylamine degradation
CKO_01318	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKO_01318	PWY-7118	chitin degradation to ethanol
CKO_01318	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CKO_01318	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CKO_01318	PWY-7557	dehydrodiconiferyl alcohol degradation
CKO_01339	PWY-5958	acridone alkaloid biosynthesis
CKO_01339	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CKO_01339	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CKO_01340	PWY-5958	acridone alkaloid biosynthesis
CKO_01340	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CKO_01340	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CKO_01344	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CKO_01344	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CKO_01344	PWY-6268	adenosylcobalamin salvage from cobalamin
CKO_01344	PWY-6269	adenosylcobalamin salvage from cobinamide II
CKO_01360	PWY-6168	flavin biosynthesis III (fungi)
CKO_01360	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CKO_01365	PWY-5686	UMP biosynthesis
CKO_01375	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CKO_01375	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CKO_01375	PWY-5989	stearate biosynthesis II (bacteria and plants)
CKO_01375	PWY-6113	superpathway of mycolate biosynthesis
CKO_01375	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CKO_01375	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CKO_01375	PWY-7096	triclosan resistance
CKO_01375	PWYG-321	mycolate biosynthesis
CKO_01450	PWY-1042	glycolysis IV (plant cytosol)
CKO_01450	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKO_01450	PWY-6901	superpathway of glucose and xylose degradation
CKO_01450	PWY-7003	glycerol degradation to butanol
CKO_01455	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CKO_01455	PWY-3162	L-tryptophan degradation V (side chain pathway)
CKO_01455	PWY-5057	L-valine degradation II
CKO_01455	PWY-5076	L-leucine degradation III
CKO_01455	PWY-5078	L-isoleucine degradation II
CKO_01455	PWY-5079	L-phenylalanine degradation III
CKO_01455	PWY-5082	L-methionine degradation III
CKO_01455	PWY-5480	pyruvate fermentation to ethanol I
CKO_01455	PWY-5486	pyruvate fermentation to ethanol II
CKO_01455	PWY-5751	phenylethanol biosynthesis
CKO_01455	PWY-6028	acetoin degradation
CKO_01455	PWY-6313	serotonin degradation
CKO_01455	PWY-6333	acetaldehyde biosynthesis I
CKO_01455	PWY-6342	noradrenaline and adrenaline degradation
CKO_01455	PWY-6587	pyruvate fermentation to ethanol III
CKO_01455	PWY-6802	salidroside biosynthesis
CKO_01455	PWY-6871	3-methylbutanol biosynthesis
CKO_01455	PWY-7013	L-1,2-propanediol degradation
CKO_01455	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKO_01455	PWY-7118	chitin degradation to ethanol
CKO_01455	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CKO_01455	PWY-7557	dehydrodiconiferyl alcohol degradation
CKO_01478	PWY-2	putrescine degradation IV
CKO_01478	PWY-3	putrescine degradation V
CKO_01499	PWY-7153	grixazone biosynthesis
CKO_01525	PWY-6454	vancomycin resistance I
CKO_01525	PWY-6455	vancomycin resistance II
CKO_01535	PWY-1042	glycolysis IV (plant cytosol)
CKO_01535	PWY-1622	formaldehyde assimilation I (serine pathway)
CKO_01535	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CKO_01535	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKO_01535	PWY-5723	Rubisco shunt
CKO_01535	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CKO_01535	PWY-6886	1-butanol autotrophic biosynthesis
CKO_01535	PWY-6901	superpathway of glucose and xylose degradation
CKO_01535	PWY-7003	glycerol degradation to butanol
CKO_01535	PWY-7124	ethylene biosynthesis V (engineered)
CKO_01535	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CKO_01540	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CKO_01547	PWY-5481	pyruvate fermentation to lactate
CKO_01547	PWY-6901	superpathway of glucose and xylose degradation
CKO_01563	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CKO_01563	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CKO_01563	PWY-6936	seleno-amino acid biosynthesis
CKO_01563	PWY-702	L-methionine biosynthesis II
CKO_01592	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CKO_01621	PWY-5392	reductive TCA cycle II
CKO_01621	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CKO_01621	PWY-5690	TCA cycle II (plants and fungi)
CKO_01621	PWY-5913	TCA cycle VI (obligate autotrophs)
CKO_01621	PWY-6728	methylaspartate cycle
CKO_01621	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKO_01621	PWY-7254	TCA cycle VII (acetate-producers)
CKO_01621	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CKO_01623	PWY-5392	reductive TCA cycle II
CKO_01623	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CKO_01623	PWY-5690	TCA cycle II (plants and fungi)
CKO_01623	PWY-5913	TCA cycle VI (obligate autotrophs)
CKO_01623	PWY-6728	methylaspartate cycle
CKO_01623	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKO_01623	PWY-7254	TCA cycle VII (acetate-producers)
CKO_01623	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CKO_01624	PWY-3861	mannitol degradation II
CKO_01624	PWY-3881	mannitol biosynthesis
CKO_01624	PWY-5659	GDP-mannose biosynthesis
CKO_01624	PWY-7456	mannan degradation
CKO_01624	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CKO_01628	PWY-7310	D-glucosaminate degradation
CKO_01629	PWY-6936	seleno-amino acid biosynthesis
CKO_01630	PWY-6609	adenine and adenosine salvage III
CKO_01630	PWY-6611	adenine and adenosine salvage V
CKO_01630	PWY-7179	purine deoxyribonucleosides degradation I
CKO_01630	PWY-7179-1	purine deoxyribonucleosides degradation
CKO_01648	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CKO_01648	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CKO_01650	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CKO_01650	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CKO_01658	PWY-6854	ethylene biosynthesis III (microbes)
CKO_01663	PWY-5386	methylglyoxal degradation I
CKO_01668	PWY-6854	ethylene biosynthesis III (microbes)
CKO_01677	PWY-6167	flavin biosynthesis II (archaea)
CKO_01677	PWY-6168	flavin biosynthesis III (fungi)
CKO_01677	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CKO_01709	PWY-1042	glycolysis IV (plant cytosol)
CKO_01709	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CKO_01709	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKO_01709	PWY-5723	Rubisco shunt
CKO_01709	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CKO_01709	PWY-6886	1-butanol autotrophic biosynthesis
CKO_01709	PWY-6901	superpathway of glucose and xylose degradation
CKO_01709	PWY-7003	glycerol degradation to butanol
CKO_01709	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CKO_01709	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKO_01713	PWY-6823	molybdenum cofactor biosynthesis
CKO_01713	PWY-6891	thiazole biosynthesis II (Bacillus)
CKO_01713	PWY-6892	thiazole biosynthesis I (E. coli)
CKO_01713	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CKO_01722	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKO_01722	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKO_01725	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKO_01728	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CKO_01728	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CKO_01728	PWY-6164	3-dehydroquinate biosynthesis I
CKO_01753	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CKO_01762	PWY-7310	D-glucosaminate degradation
CKO_01763	PWY-7310	D-glucosaminate degradation
CKO_01783	PWY-5350	thiosulfate disproportionation III (rhodanese)
CKO_01791	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CKO_01800	PWY-1042	glycolysis IV (plant cytosol)
CKO_01800	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKO_01800	PWY-6901	superpathway of glucose and xylose degradation
CKO_01800	PWY-7003	glycerol degradation to butanol
CKO_01801	PWY-2723	trehalose degradation V
CKO_01801	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CKO_01801	PWY-5661	GDP-glucose biosynthesis
CKO_01801	PWY-5940	streptomycin biosynthesis
CKO_01801	PWY-621	sucrose degradation III (sucrose invertase)
CKO_01801	PWY-622	starch biosynthesis
CKO_01801	PWY-6731	starch degradation III
CKO_01801	PWY-6737	starch degradation V
CKO_01801	PWY-6981	chitin biosynthesis
CKO_01801	PWY-7238	sucrose biosynthesis II
CKO_01801	PWY-7343	UDP-glucose biosynthesis
CKO_01814	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CKO_01814	PWY-7177	UTP and CTP dephosphorylation II
CKO_01814	PWY-7185	UTP and CTP dephosphorylation I
CKO_01821	PWY-1881	formate oxidation to CO<sub>2</sub>
CKO_01821	PWY-5497	purine nucleobases degradation II (anaerobic)
CKO_01821	PWY-6696	oxalate degradation III
CKO_01835	PWY-5913	TCA cycle VI (obligate autotrophs)
CKO_01835	PWY-6549	L-glutamine biosynthesis III
CKO_01835	PWY-6728	methylaspartate cycle
CKO_01835	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKO_01835	PWY-7124	ethylene biosynthesis V (engineered)
CKO_01835	PWY-7254	TCA cycle VII (acetate-producers)
CKO_01835	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CKO_01840	PWY-6123	inosine-5'-phosphate biosynthesis I
CKO_01840	PWY-6124	inosine-5'-phosphate biosynthesis II
CKO_01840	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CKO_01840	PWY-7234	inosine-5'-phosphate biosynthesis III
CKO_01932	PWY-6517	<i>N</i>-acetylglucosamine degradation II
CKO_01932	PWY-6906	chitin derivatives degradation
CKO_01949	PWY-6902	chitin degradation II
CKO_01957	PWY-7310	D-glucosaminate degradation
CKO_01960	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CKO_01960	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CKO_01960	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKO_01960	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CKO_01960	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CKO_01960	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CKO_01962	PWY-6543	4-aminobenzoate biosynthesis
CKO_01962	PWY-6722	candicidin biosynthesis
CKO_01965	PWY-5367	petroselinate biosynthesis
CKO_01965	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CKO_01965	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CKO_01965	PWY-5989	stearate biosynthesis II (bacteria and plants)
CKO_01965	PWY-5994	palmitate biosynthesis I (animals and fungi)
CKO_01965	PWY-6113	superpathway of mycolate biosynthesis
CKO_01965	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CKO_01965	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CKO_01965	PWY-6951	CKO_01965|fabG|YP_001453528.1|GeneID:5583402
CKO_01965	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
CKO_01965	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CKO_01965	PWYG-321	mycolate biosynthesis
CKO_01966	PWY-4381	fatty acid biosynthesis initiation I
CKO_01966	PWY-6799	fatty acid biosynthesis (plant mitochondria)
CKO_01966	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CKO_01967	PWY-4381	fatty acid biosynthesis initiation I
CKO_02001	PWY-5686	UMP biosynthesis
CKO_02036	PWY-1622	formaldehyde assimilation I (serine pathway)
CKO_02042	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
CKO_02042	PWY-6853	ethylene biosynthesis II (microbes)
CKO_02042	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CKO_02047	PWY-6785	hydrogen production VIII
CKO_02076	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKO_02076	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKO_02114	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CKO_02114	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CKO_02114	PWY-5989	stearate biosynthesis II (bacteria and plants)
CKO_02114	PWY-5994	palmitate biosynthesis I (animals and fungi)
CKO_02114	PWY-6113	superpathway of mycolate biosynthesis
CKO_02114	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CKO_02114	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CKO_02114	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CKO_02114	PWYG-321	mycolate biosynthesis
CKO_02123	PWY-5686	UMP biosynthesis
CKO_02134	PWY-5381	pyridine nucleotide cycling (plants)
CKO_02139	PWY-5913	TCA cycle VI (obligate autotrophs)
CKO_02139	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CKO_02139	PWY-6638	sulfolactate degradation III
CKO_02139	PWY-6642	(<i>R</i>)-cysteate degradation
CKO_02139	PWY-6643	coenzyme M biosynthesis II
CKO_02139	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CKO_02139	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CKO_02139	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKO_02152	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CKO_02152	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CKO_02163	PWY-7205	CMP phosphorylation
CKO_02164	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CKO_02168	PWY-5480	pyruvate fermentation to ethanol I
CKO_02168	PWY-5485	pyruvate fermentation to acetate IV
CKO_02168	PWY-5493	reductive monocarboxylic acid cycle
CKO_02178	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CKO_02215	PWY-6902	chitin degradation II
CKO_02217	PWY-6902	chitin degradation II
CKO_02270	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKO_02270	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKO_02282	PWY-6823	molybdenum cofactor biosynthesis
CKO_02283	PWY-6823	molybdenum cofactor biosynthesis
CKO_02285	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CKO_02285	PWY-5723	Rubisco shunt
CKO_02287	PWY-5480	pyruvate fermentation to ethanol I
CKO_02287	PWY-5485	pyruvate fermentation to acetate IV
CKO_02287	PWY-5493	reductive monocarboxylic acid cycle
CKO_02341	PWY-6823	molybdenum cofactor biosynthesis
CKO_02345	PWY-6823	molybdenum cofactor biosynthesis
CKO_02350	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CKO_02351	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CKO_02352	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CKO_02352	PWY-6578	8-amino-7-oxononanoate biosynthesis III
CKO_02352	PWY-7147	8-amino-7-oxononanoate biosynthesis II
CKO_02353	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CKO_02356	PWY-5028	L-histidine degradation II
CKO_02356	PWY-5030	L-histidine degradation III
CKO_02357	PWY-5028	L-histidine degradation II
CKO_02357	PWY-5030	L-histidine degradation III
CKO_02360	PWY-5028	L-histidine degradation II
CKO_02360	PWY-5030	L-histidine degradation III
CKO_02362	PWY-1081	homogalacturonan degradation
CKO_02362	PWY-7246	pectin degradation II
CKO_02362	PWY-7248	pectin degradation III
CKO_02376	PWY-3821	galactose degradation III
CKO_02376	PWY-6317	galactose degradation I (Leloir pathway)
CKO_02376	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CKO_02376	PWY-6527	stachyose degradation
CKO_02376	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CKO_02376	PWY-7344	UDP-D-galactose biosynthesis
CKO_02377	PWY-6317	galactose degradation I (Leloir pathway)
CKO_02377	PWY-6527	stachyose degradation
CKO_02378	PWY-3821	galactose degradation III
CKO_02378	PWY-6317	galactose degradation I (Leloir pathway)
CKO_02378	PWY-6527	stachyose degradation
CKO_02379	PWY-2723	trehalose degradation V
CKO_02379	PWY-6317	galactose degradation I (Leloir pathway)
CKO_02379	PWY-6737	starch degradation V
CKO_02381	PWY-1622	formaldehyde assimilation I (serine pathway)
CKO_02381	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKO_02386	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CKO_02386	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CKO_02386	PWY-6164	3-dehydroquinate biosynthesis I
CKO_02390	PWY-5316	nicotine biosynthesis
CKO_02390	PWY-7342	superpathway of nicotine biosynthesis
CKO_02408	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
CKO_02414	PWY-7310	D-glucosaminate degradation
CKO_02416	PWY-5087	L-glutamate degradation VI (to pyruvate)
CKO_02416	PWY-5103	L-isoleucine biosynthesis III
CKO_02416	PWY-6728	methylaspartate cycle
CKO_02418	PWY-5087	L-glutamate degradation VI (to pyruvate)
CKO_02418	PWY-5103	L-isoleucine biosynthesis III
CKO_02418	PWY-6728	methylaspartate cycle
CKO_02419	PWY-5087	L-glutamate degradation VI (to pyruvate)
CKO_02419	PWY-6728	methylaspartate cycle
CKO_02424	PWY-5392	reductive TCA cycle II
CKO_02424	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CKO_02424	PWY-5690	TCA cycle II (plants and fungi)
CKO_02424	PWY-5913	TCA cycle VI (obligate autotrophs)
CKO_02424	PWY-6728	methylaspartate cycle
CKO_02424	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKO_02424	PWY-7254	TCA cycle VII (acetate-producers)
CKO_02424	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CKO_02425	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CKO_02425	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CKO_02425	PWY-6268	adenosylcobalamin salvage from cobalamin
CKO_02425	PWY-6269	adenosylcobalamin salvage from cobinamide II
CKO_02429	PWY-5392	reductive TCA cycle II
CKO_02429	PWY-5537	pyruvate fermentation to acetate V
CKO_02429	PWY-5538	pyruvate fermentation to acetate VI
CKO_02429	PWY-5690	TCA cycle II (plants and fungi)
CKO_02429	PWY-5913	TCA cycle VI (obligate autotrophs)
CKO_02429	PWY-6728	methylaspartate cycle
CKO_02429	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKO_02429	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CKO_02431	PWY-5392	reductive TCA cycle II
CKO_02431	PWY-5537	pyruvate fermentation to acetate V
CKO_02431	PWY-5538	pyruvate fermentation to acetate VI
CKO_02431	PWY-5690	TCA cycle II (plants and fungi)
CKO_02431	PWY-5913	TCA cycle VI (obligate autotrophs)
CKO_02431	PWY-6728	methylaspartate cycle
CKO_02431	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKO_02431	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CKO_02433	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CKO_02434	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CKO_02435	PWY-3781	aerobic respiration I (cytochrome c)
CKO_02435	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CKO_02435	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CKO_02435	PWY-5690	TCA cycle II (plants and fungi)
CKO_02435	PWY-6728	methylaspartate cycle
CKO_02435	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKO_02435	PWY-7254	TCA cycle VII (acetate-producers)
CKO_02435	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CKO_02436	PWY-3781	aerobic respiration I (cytochrome c)
CKO_02436	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CKO_02436	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CKO_02436	PWY-5690	TCA cycle II (plants and fungi)
CKO_02436	PWY-6728	methylaspartate cycle
CKO_02436	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKO_02436	PWY-7254	TCA cycle VII (acetate-producers)
CKO_02436	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CKO_02458	PWY-5663	tetrahydrobiopterin biosynthesis I
CKO_02458	PWY-5664	tetrahydrobiopterin biosynthesis II
CKO_02458	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CKO_02458	PWY-6703	preQ<sub>0</sub> biosynthesis
CKO_02458	PWY-6983	tetrahydrobiopterin biosynthesis III
CKO_02458	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CKO_02469	PWY-46	putrescine biosynthesis III
CKO_02469	PWY-6305	putrescine biosynthesis IV
CKO_02471	PWY-2723	trehalose degradation V
CKO_02471	PWY-3801	sucrose degradation II (sucrose synthase)
CKO_02471	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CKO_02471	PWY-5661	GDP-glucose biosynthesis
CKO_02471	PWY-5661-1	CKO_02471|CKO_02471|YP_001454024.1|GeneID:5581145
CKO_02471	PWY-5940	streptomycin biosynthesis
CKO_02471	PWY-5941	glycogen degradation II (eukaryotic)
CKO_02471	PWY-622	starch biosynthesis
CKO_02471	PWY-6731	starch degradation III
CKO_02471	PWY-6737	starch degradation V
CKO_02471	PWY-6749	CMP-legionaminate biosynthesis I
CKO_02471	PWY-7238	sucrose biosynthesis II
CKO_02471	PWY-7343	UDP-glucose biosynthesis
CKO_02482	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CKO_02485	PWY-7310	D-glucosaminate degradation
CKO_02486	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CKO_02486	PWY-6855	chitin degradation I (archaea)
CKO_02486	PWY-6906	chitin derivatives degradation
CKO_02487	PWY-6906	chitin derivatives degradation
CKO_02487	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
CKO_02487	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
CKO_02517	PWY-5381	pyridine nucleotide cycling (plants)
CKO_02517	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CKO_02518	PWY-5443	aminopropanol phosphate biosynthesis I
CKO_02519	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CKO_02519	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CKO_02519	PWY-6269	adenosylcobalamin salvage from cobinamide II
CKO_02526	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKO_02526	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKO_02528	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CKO_02528	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CKO_02530	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CKO_02530	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CKO_02530	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CKO_02544	PWY-6038	citrate degradation
CKO_02546	PWY-5796	malonate decarboxylase activation
CKO_02560	PWY-6349	CDP-archaeol biosynthesis
CKO_02565	PWY-5901	2,3-dihydroxybenzoate biosynthesis
CKO_02566	PWY-5901	2,3-dihydroxybenzoate biosynthesis
CKO_02568	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
CKO_02568	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CKO_02568	PWY-5901	2,3-dihydroxybenzoate biosynthesis
CKO_02568	PWY-6406	salicylate biosynthesis I
CKO_02580	PWY-6012	acyl carrier protein metabolism I
CKO_02580	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CKO_02583	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CKO_02583	PWY-7494	choline degradation IV
CKO_02584	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CKO_02584	PWY-7494	choline degradation IV
CKO_02585	PWY-6840	homoglutathione biosynthesis
CKO_02585	PWY-7255	ergothioneine biosynthesis I (bacteria)
CKO_02629	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CKO_02629	PWY-2201	folate transformations I
CKO_02629	PWY-3841	folate transformations II
CKO_02629	PWY-5030	L-histidine degradation III
CKO_02629	PWY-5497	purine nucleobases degradation II (anaerobic)
CKO_02629	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CKO_02635	PWY-6123	inosine-5'-phosphate biosynthesis I
CKO_02635	PWY-7234	inosine-5'-phosphate biosynthesis III
CKO_02675	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CKO_02680	PWY-6605	adenine and adenosine salvage II
CKO_02680	PWY-6610	adenine and adenosine salvage IV
CKO_02716	PWY-6703	preQ<sub>0</sub> biosynthesis
CKO_02730	PWY-3781	aerobic respiration I (cytochrome c)
CKO_02730	PWY-4521	arsenite oxidation I (respiratory)
CKO_02730	PWY-6692	Fe(II) oxidation
CKO_02730	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CKO_02730	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
CKO_02736	PWY-6654	phosphopantothenate biosynthesis III
CKO_02741	PWY-6891	thiazole biosynthesis II (Bacillus)
CKO_02741	PWY-6892	thiazole biosynthesis I (E. coli)
CKO_02741	PWY-7560	methylerythritol phosphate pathway II
CKO_02743	PWY-5269	cardiolipin biosynthesis II
CKO_02743	PWY-5668	cardiolipin biosynthesis I
CKO_02744	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CKO_02744	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CKO_02744	PWY-6896	thiamin salvage I
CKO_02744	PWY-6897	thiamin salvage II
CKO_02746	PWY-6167	flavin biosynthesis II (archaea)
CKO_02746	PWY-6168	flavin biosynthesis III (fungi)
CKO_02755	PWY-6700	queuosine biosynthesis
CKO_02756	PWY-6700	queuosine biosynthesis
CKO_02757	PWY-6012	acyl carrier protein metabolism I
CKO_02764	PWY-842	starch degradation I
CKO_02783	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CKO_02785	PWY-3341	L-proline biosynthesis III
CKO_02785	PWY-4981	L-proline biosynthesis II (from arginine)
CKO_02785	PWY-6344	L-ornithine degradation II (Stickland reaction)
CKO_02788	PWY-5491	diethylphosphate degradation
CKO_02797	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKO_02797	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKO_02807	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CKO_02807	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CKO_02825	PWY-6807	xyloglucan degradation II (exoglucanase)
CKO_02827	PWY-3941	&beta;-alanine biosynthesis II
CKO_02827	PWY-5104	L-isoleucine biosynthesis IV
CKO_02827	PWY-5747	2-methylcitrate cycle II
CKO_02830	PWY-5747	2-methylcitrate cycle II
CKO_02894	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CKO_02941	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CKO_02941	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CKO_02941	PWY-6936	seleno-amino acid biosynthesis
CKO_02941	PWY-702	L-methionine biosynthesis II
CKO_02944	PWY-621	sucrose degradation III (sucrose invertase)
CKO_02945	PWY-7310	D-glucosaminate degradation
CKO_02963	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
CKO_02971	PWY-5386	methylglyoxal degradation I
CKO_02983	PWY-6123	inosine-5'-phosphate biosynthesis I
CKO_02983	PWY-6124	inosine-5'-phosphate biosynthesis II
CKO_02983	PWY-7234	inosine-5'-phosphate biosynthesis III
CKO_02984	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CKO_02984	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CKO_02984	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CKO_02989	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CKO_02989	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CKO_02990	PWY-5381	pyridine nucleotide cycling (plants)
CKO_02992	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
CKO_02993	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CKO_02993	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CKO_02993	PWY-6897	thiamin salvage II
CKO_02993	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CKO_02993	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CKO_02993	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
CKO_02993	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CKO_02994	PWY-6891	thiazole biosynthesis II (Bacillus)
CKO_02994	PWY-6892	thiazole biosynthesis I (E. coli)
CKO_02996	PWY-6891	thiazole biosynthesis II (Bacillus)
CKO_02996	PWY-6892	thiazole biosynthesis I (E. coli)
CKO_02997	PWY-6892	thiazole biosynthesis I (E. coli)
CKO_02997	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CKO_02999	PWY-7310	D-glucosaminate degradation
CKO_03017	PWY-3961	phosphopantothenate biosynthesis II
CKO_03018	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CKO_03018	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CKO_03019	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKO_03019	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKO_03024	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKO_03024	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKO_03031	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CKO_03034	PWY-4983	L-citrulline-nitric oxide cycle
CKO_03034	PWY-4984	urea cycle
CKO_03034	PWY-5	canavanine biosynthesis
CKO_03034	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKO_03034	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CKO_03035	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKO_03035	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CKO_03036	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKO_03036	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CKO_03037	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKO_03038	PWY-1622	formaldehyde assimilation I (serine pathway)
CKO_03038	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CKO_03038	PWY-5913	TCA cycle VI (obligate autotrophs)
CKO_03038	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CKO_03038	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
CKO_03038	PWY-6549	L-glutamine biosynthesis III
CKO_03038	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CKO_03038	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CKO_03038	PWY-7124	ethylene biosynthesis V (engineered)
CKO_03041	PWY-7310	D-glucosaminate degradation
CKO_03043	PWY-5480	pyruvate fermentation to ethanol I
CKO_03043	PWY-5485	pyruvate fermentation to acetate IV
CKO_03043	PWY-5493	reductive monocarboxylic acid cycle
CKO_03044	PWY-7310	D-glucosaminate degradation
CKO_03045	PWY-7310	D-glucosaminate degradation
CKO_03048	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CKO_03048	PWY-5723	Rubisco shunt
CKO_03049	PWY-6349	CDP-archaeol biosynthesis
CKO_03051	PWY-2201	folate transformations I
CKO_03051	PWY-3841	folate transformations II
CKO_03054	PWY-2941	L-lysine biosynthesis II
CKO_03054	PWY-2942	L-lysine biosynthesis III
CKO_03054	PWY-5097	L-lysine biosynthesis VI
CKO_03054	PWY-6559	spermidine biosynthesis II
CKO_03054	PWY-6562	norspermidine biosynthesis
CKO_03054	PWY-7153	grixazone biosynthesis
CKO_03064	PWY-5839	menaquinol-7 biosynthesis
CKO_03064	PWY-5851	demethylmenaquinol-9 biosynthesis
CKO_03064	PWY-5852	demethylmenaquinol-8 biosynthesis I
CKO_03064	PWY-5853	demethylmenaquinol-6 biosynthesis I
CKO_03064	PWY-5890	menaquinol-10 biosynthesis
CKO_03064	PWY-5891	menaquinol-11 biosynthesis
CKO_03064	PWY-5892	menaquinol-12 biosynthesis
CKO_03064	PWY-5895	menaquinol-13 biosynthesis
CKO_03072	PWY-4261	glycerol degradation I
CKO_03075	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKO_03079	PWY-1042	glycolysis IV (plant cytosol)
CKO_03079	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKO_03079	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CKO_03079	PWY-7003	glycerol degradation to butanol
CKO_03085	PWY-1042	glycolysis IV (plant cytosol)
CKO_03085	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CKO_03085	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKO_03085	PWY-7385	1,3-propanediol biosynthesis (engineered)
CKO_03091	PWY-2941	L-lysine biosynthesis II
CKO_03091	PWY-2942	L-lysine biosynthesis III
CKO_03091	PWY-5097	L-lysine biosynthesis VI
CKO_03093	PWY-6854	ethylene biosynthesis III (microbes)
CKO_03132	PWY-7446	sulfoglycolysis
CKO_03140	PWY-381	nitrate reduction II (assimilatory)
CKO_03140	PWY-5675	nitrate reduction V (assimilatory)
CKO_03140	PWY-6549	L-glutamine biosynthesis III
CKO_03140	PWY-6963	ammonia assimilation cycle I
CKO_03140	PWY-6964	ammonia assimilation cycle II
CKO_03157	PWY-5964	guanylyl molybdenum cofactor biosynthesis
CKO_03181	PWY-4381	fatty acid biosynthesis initiation I
CKO_03181	PWY-5743	3-hydroxypropanoate cycle
CKO_03181	PWY-5744	glyoxylate assimilation
CKO_03181	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKO_03181	PWY-6679	jadomycin biosynthesis
CKO_03181	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CKO_03186	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CKO_03186	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CKO_03186	PWY-5989	stearate biosynthesis II (bacteria and plants)
CKO_03186	PWY-5994	palmitate biosynthesis I (animals and fungi)
CKO_03186	PWY-6113	superpathway of mycolate biosynthesis
CKO_03186	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CKO_03186	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CKO_03186	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CKO_03186	PWYG-321	mycolate biosynthesis
CKO_03194	PWY-7560	methylerythritol phosphate pathway II
CKO_03208	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CKO_03208	PWY-6153	autoinducer AI-2 biosynthesis I
CKO_03208	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
CKO_03214	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CKO_03220	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKO_03220	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CKO_03220	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CKO_03220	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKO_03227	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CKO_03227	PWY-6148	tetrahydromethanopterin biosynthesis
CKO_03227	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CKO_03227	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CKO_03228	PWY-6654	phosphopantothenate biosynthesis III
CKO_03230	PWY-5155	&beta;-alanine biosynthesis III
CKO_03241	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CKO_03241	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CKO_03241	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CKO_03241	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CKO_03242	PWY-6599	guanine and guanosine salvage II
CKO_03242	PWY-6609	adenine and adenosine salvage III
CKO_03242	PWY-6610	adenine and adenosine salvage IV
CKO_03242	PWY-6620	guanine and guanosine salvage
CKO_03248	PWY-6834	spermidine biosynthesis III
CKO_03252	PWY-5747	2-methylcitrate cycle II
CKO_03256	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CKO_03256	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CKO_03259	PWY-6891	thiazole biosynthesis II (Bacillus)
CKO_03259	PWY-6892	thiazole biosynthesis I (E. coli)
CKO_03259	PWY-7560	methylerythritol phosphate pathway II
CKO_03267	PWY-5316	nicotine biosynthesis
CKO_03267	PWY-5381	pyridine nucleotide cycling (plants)
CKO_03267	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CKO_03267	PWY-7342	superpathway of nicotine biosynthesis
CKO_03276	PWY-6502	oxidized GTP and dGTP detoxification
CKO_03283	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKO_03283	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKO_03284	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKO_03284	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKO_03285	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKO_03285	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CKO_03285	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CKO_03285	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKO_03287	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKO_03287	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKO_03288	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKO_03288	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CKO_03288	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKO_03289	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKO_03289	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKO_03300	PWY-5101	L-isoleucine biosynthesis II
CKO_03300	PWY-5103	L-isoleucine biosynthesis III
CKO_03300	PWY-5104	L-isoleucine biosynthesis IV
CKO_03300	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CKO_03300	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CKO_03300	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CKO_03300	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKO_03301	PWY-5101	L-isoleucine biosynthesis II
CKO_03301	PWY-5103	L-isoleucine biosynthesis III
CKO_03301	PWY-5104	L-isoleucine biosynthesis IV
CKO_03301	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CKO_03301	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CKO_03301	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CKO_03301	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKO_03304	PWY-6871	3-methylbutanol biosynthesis
CKO_03305	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CKO_03321	PWY-6961	L-ascorbate degradation II (bacterial, aerobic)
CKO_03333	PWY-3841	folate transformations II
CKO_03333	PWY-6614	tetrahydrofolate biosynthesis
CKO_03335	PWY-6785	hydrogen production VIII
CKO_03350	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKO_03350	PWY-5686	UMP biosynthesis
CKO_03350	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CKO_03351	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKO_03351	PWY-5686	UMP biosynthesis
CKO_03351	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CKO_03354	PWY-2941	L-lysine biosynthesis II
CKO_03354	PWY-2942	L-lysine biosynthesis III
CKO_03354	PWY-5097	L-lysine biosynthesis VI
CKO_03363	PWY-7560	methylerythritol phosphate pathway II
CKO_03367	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CKO_03367	PWY-6167	flavin biosynthesis II (archaea)
CKO_03367	PWY-6168	flavin biosynthesis III (fungi)
CKO_03378	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CKO_03378	PWY-5723	Rubisco shunt
CKO_03384	PWY-702	L-methionine biosynthesis II
CKO_03385	PWY-2941	L-lysine biosynthesis II
CKO_03385	PWY-2942	L-lysine biosynthesis III
CKO_03385	PWY-5097	L-lysine biosynthesis VI
CKO_03385	PWY-6559	spermidine biosynthesis II
CKO_03385	PWY-6562	norspermidine biosynthesis
CKO_03385	PWY-7153	grixazone biosynthesis
CKO_03402	PWY-6984	lipoate salvage II
CKO_03402	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CKO_03402	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CKO_03407	PWY-4202	arsenate detoxification I (glutaredoxin)
CKO_03407	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CKO_03407	PWY-6608	guanosine nucleotides degradation III
CKO_03407	PWY-6609	adenine and adenosine salvage III
CKO_03407	PWY-6611	adenine and adenosine salvage V
CKO_03407	PWY-6620	guanine and guanosine salvage
CKO_03407	PWY-6627	salinosporamide A biosynthesis
CKO_03407	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
CKO_03407	PWY-7179	purine deoxyribonucleosides degradation I
CKO_03407	PWY-7179-1	purine deoxyribonucleosides degradation
CKO_03408	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CKO_03409	PWY-7181	pyrimidine deoxyribonucleosides degradation
CKO_03410	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CKO_03430	PWY-7310	D-glucosaminate degradation
CKO_03454	PWY-6936	seleno-amino acid biosynthesis
CKO_03507	PWY-6703	preQ<sub>0</sub> biosynthesis
CKO_03539	PWY-5988	wound-induced proteolysis I
CKO_03539	PWY-6018	seed germination protein turnover
CKO_03551	PWY-4981	L-proline biosynthesis II (from arginine)
CKO_03551	PWY-4984	urea cycle
CKO_03551	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CKO_03555	PWY-4981	L-proline biosynthesis II (from arginine)
CKO_03557	PWY-4981	L-proline biosynthesis II (from arginine)
CKO_03557	PWY-4984	urea cycle
CKO_03557	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CKO_03562	PWY-5686	UMP biosynthesis
CKO_03571	PWY-7310	D-glucosaminate degradation
CKO_03575	PWY-7310	D-glucosaminate degradation
CKO_03578	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CKO_03580	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKO_03580	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKO_03580	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKO_03583	PWY-7310	D-glucosaminate degradation
CKO_03584	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CKO_03584	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CKO_03584	PWY-7242	D-fructuronate degradation
CKO_03584	PWY-7310	D-glucosaminate degradation
CKO_03585	PWY-7310	D-glucosaminate degradation
CKO_03598	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKO_03638	PWY-6961	L-ascorbate degradation II (bacterial, aerobic)
CKO_03639	PWY-5686	UMP biosynthesis
CKO_03642	PWY-7310	D-glucosaminate degradation
CKO_03657	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CKO_03664	PWY-2781	<i>cis</i>-zeatin biosynthesis
CKO_03669	PWY-6938	NADH repair
CKO_03674	PWY-5669	phosphatidylethanolamine biosynthesis I
CKO_03678	PWY-3781	aerobic respiration I (cytochrome c)
CKO_03678	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CKO_03678	PWY-5392	reductive TCA cycle II
CKO_03678	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CKO_03678	PWY-5690	TCA cycle II (plants and fungi)
CKO_03678	PWY-5913	TCA cycle VI (obligate autotrophs)
CKO_03678	PWY-6728	methylaspartate cycle
CKO_03678	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKO_03678	PWY-7254	TCA cycle VII (acetate-producers)
CKO_03678	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CKO_03678	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CKO_03679	PWY-3781	aerobic respiration I (cytochrome c)
CKO_03679	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CKO_03679	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CKO_03679	PWY-5690	TCA cycle II (plants and fungi)
CKO_03679	PWY-6728	methylaspartate cycle
CKO_03679	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKO_03679	PWY-7254	TCA cycle VII (acetate-producers)
CKO_03679	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CKO_03696	PWY-5392	reductive TCA cycle II
CKO_03696	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CKO_03696	PWY-5690	TCA cycle II (plants and fungi)
CKO_03696	PWY-5913	TCA cycle VI (obligate autotrophs)
CKO_03696	PWY-6728	methylaspartate cycle
CKO_03696	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKO_03696	PWY-7254	TCA cycle VII (acetate-producers)
CKO_03696	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CKO_03720	PWY-6123	inosine-5'-phosphate biosynthesis I
CKO_03720	PWY-6124	inosine-5'-phosphate biosynthesis II
CKO_03720	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CKO_03720	PWY-7234	inosine-5'-phosphate biosynthesis III
CKO_03735	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
CKO_03735	PWY-7248	pectin degradation III
CKO_03736	PWY-7242	D-fructuronate degradation
CKO_03749	PWY-5392	reductive TCA cycle II
CKO_03749	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CKO_03749	PWY-5690	TCA cycle II (plants and fungi)
CKO_03749	PWY-5913	TCA cycle VI (obligate autotrophs)
CKO_03749	PWY-6728	methylaspartate cycle
CKO_03749	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKO_03749	PWY-7254	TCA cycle VII (acetate-producers)
CKO_03749	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CKO_03769	PWY-7399	methylphosphonate degradation II
CKO_03772	PWY-7399	methylphosphonate degradation II
CKO_03774	PWY-7399	methylphosphonate degradation II
CKO_03775	PWY-7399	methylphosphonate degradation II
CKO_03776	PWY-5532	adenosine nucleotides degradation IV
CKO_03788	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CKO_03788	PWY-5723	Rubisco shunt
CKO_03803	PWY-1881	formate oxidation to CO<sub>2</sub>
CKO_03803	PWY-5497	purine nucleobases degradation II (anaerobic)
CKO_03803	PWY-6696	oxalate degradation III
CKO_03814	PWY-5674	nitrate reduction IV (dissimilatory)
CKO_03816	PWY-6672	<i>cis</i>-genanyl-CoA degradation
CKO_03816	PWY-7118	chitin degradation to ethanol
CKO_03845	PWY-6348	phosphate acquisition
CKO_03845	PWY-6357	phosphate utilization in cell wall regeneration
CKO_03845	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CKO_03845	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CKO_03850	PWY-5392	reductive TCA cycle II
CKO_03850	PWY-5537	pyruvate fermentation to acetate V
CKO_03850	PWY-5538	pyruvate fermentation to acetate VI
CKO_03850	PWY-5690	TCA cycle II (plants and fungi)
CKO_03850	PWY-5913	TCA cycle VI (obligate autotrophs)
CKO_03850	PWY-6728	methylaspartate cycle
CKO_03850	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKO_03850	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CKO_03851	PWY-5392	reductive TCA cycle II
CKO_03851	PWY-5537	pyruvate fermentation to acetate V
CKO_03851	PWY-5538	pyruvate fermentation to acetate VI
CKO_03851	PWY-5690	TCA cycle II (plants and fungi)
CKO_03851	PWY-5913	TCA cycle VI (obligate autotrophs)
CKO_03851	PWY-6728	methylaspartate cycle
CKO_03851	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKO_03851	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CKO_03852	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CKO_03852	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CKO_03853	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CKO_03854	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CKO_03855	PWY-5913	TCA cycle VI (obligate autotrophs)
CKO_03855	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CKO_03855	PWY-6638	sulfolactate degradation III
CKO_03855	PWY-6642	(<i>R</i>)-cysteate degradation
CKO_03855	PWY-6643	coenzyme M biosynthesis II
CKO_03855	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CKO_03855	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CKO_03855	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKO_03857	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKO_03873	PWY-7039	phosphatidate metabolism, as a signaling molecule
CKO_03874	PWY-5667	CDP-diacylglycerol biosynthesis I
CKO_03874	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
CKO_03876	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
CKO_03876	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
CKO_03876	PWY-6148	tetrahydromethanopterin biosynthesis
CKO_03893	PWY-3801	sucrose degradation II (sucrose synthase)
CKO_03893	PWY-5054	sorbitol biosynthesis I
CKO_03893	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CKO_03893	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CKO_03893	PWY-5659	GDP-mannose biosynthesis
CKO_03893	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CKO_03893	PWY-621	sucrose degradation III (sucrose invertase)
CKO_03893	PWY-622	starch biosynthesis
CKO_03893	PWY-6531	mannitol cycle
CKO_03893	PWY-6981	chitin biosynthesis
CKO_03893	PWY-7238	sucrose biosynthesis II
CKO_03893	PWY-7347	sucrose biosynthesis III
CKO_03893	PWY-7385	1,3-propanediol biosynthesis (engineered)
CKO_03894	PWY-2941	L-lysine biosynthesis II
CKO_03894	PWY-2942	L-lysine biosynthesis III
CKO_03894	PWY-5097	L-lysine biosynthesis VI
CKO_03894	PWY-6559	spermidine biosynthesis II
CKO_03894	PWY-6562	norspermidine biosynthesis
CKO_03894	PWY-7153	grixazone biosynthesis
CKO_03902	PWY-2201	folate transformations I
CKO_03902	PWY-3841	folate transformations II
CKO_03905	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKO_03906	PWY-6728	methylaspartate cycle
CKO_03906	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKO_03906	PWY-7118	chitin degradation to ethanol
CKO_03906	PWY-7294	xylose degradation IV
CKO_03906	PWY-7295	L-arabinose degradation IV
CKO_03919	PWY-3461	L-tyrosine biosynthesis II
CKO_03919	PWY-3462	L-phenylalanine biosynthesis II
CKO_03919	PWY-6120	L-tyrosine biosynthesis III
CKO_03919	PWY-6627	salinosporamide A biosynthesis
CKO_03919	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
CKO_03920	PWY-3461	L-tyrosine biosynthesis II
CKO_03920	PWY-3462	L-phenylalanine biosynthesis II
CKO_03920	PWY-6120	L-tyrosine biosynthesis III
CKO_03920	PWY-6627	salinosporamide A biosynthesis
CKO_03920	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
CKO_03921	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CKO_03921	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CKO_03921	PWY-6164	3-dehydroquinate biosynthesis I
CKO_03930	PWY-6829	tRNA methylation (yeast)
CKO_03930	PWY-7285	methylwyosine biosynthesis
CKO_03930	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CKO_03937	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CKO_03937	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CKO_03937	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CKO_03971	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CKO_03973	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CKO_03973	PWY-5389	3-methylthiopropanoate biosynthesis
CKO_03974	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CKO_03974	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
CKO_03975	PWY-6754	<i>S</i>-methyl-5'-thioadenosine degradation I
CKO_03979	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CKO_03979	PWY-6416	quinate degradation II
CKO_03979	PWY-6707	gallate biosynthesis
CKO_03984	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CKO_03994	PWY-5642	2,4-dinitrotoluene degradation
CKO_03994	PWY-6373	acrylate degradation
CKO_04024	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CKO_04024	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CKO_04024	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CKO_04024	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CKO_04024	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKO_04024	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKO_04024	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CKO_04024	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CKO_04025	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CKO_04025	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CKO_04025	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CKO_04025	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CKO_04025	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKO_04025	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKO_04025	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CKO_04025	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CKO_04036	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CKO_04036	PWY-6153	autoinducer AI-2 biosynthesis I
CKO_04036	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
CKO_04038	PWY-6840	homoglutathione biosynthesis
CKO_04038	PWY-7255	ergothioneine biosynthesis I (bacteria)
CKO_04057	PWY-7310	D-glucosaminate degradation
CKO_04070	PWY-7310	D-glucosaminate degradation
CKO_04105	PWY-5381	pyridine nucleotide cycling (plants)
CKO_04105	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CKO_04105	PWY-6596	adenosine nucleotides degradation I
CKO_04105	PWY-6606	guanosine nucleotides degradation II
CKO_04105	PWY-6607	guanosine nucleotides degradation I
CKO_04105	PWY-6608	guanosine nucleotides degradation III
CKO_04105	PWY-7185	UTP and CTP dephosphorylation I
CKO_04107	PWY-7560	methylerythritol phosphate pathway II
CKO_04108	PWY-7560	methylerythritol phosphate pathway II
CKO_04111	PWY-5340	sulfate activation for sulfonation
CKO_04112	PWY-5278	sulfite oxidation III
CKO_04112	PWY-5340	sulfate activation for sulfonation
CKO_04112	PWY-6683	sulfate reduction III (assimilatory)
CKO_04112	PWY-6932	selenate reduction
CKO_04113	PWY-5278	sulfite oxidation III
CKO_04113	PWY-5340	sulfate activation for sulfonation
CKO_04113	PWY-6683	sulfate reduction III (assimilatory)
CKO_04113	PWY-6932	selenate reduction
CKO_04117	PWY-6683	sulfate reduction III (assimilatory)
CKO_04119	PWY-6683	sulfate reduction III (assimilatory)
CKO_04128	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKO_04128	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKO_04133	PWY-6703	preQ<sub>0</sub> biosynthesis
CKO_04134	PWY-1042	glycolysis IV (plant cytosol)
CKO_04134	PWY-1622	formaldehyde assimilation I (serine pathway)
CKO_04134	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CKO_04134	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKO_04134	PWY-5723	Rubisco shunt
CKO_04134	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CKO_04134	PWY-6886	1-butanol autotrophic biosynthesis
CKO_04134	PWY-6901	superpathway of glucose and xylose degradation
CKO_04134	PWY-7003	glycerol degradation to butanol
CKO_04134	PWY-7124	ethylene biosynthesis V (engineered)
CKO_04134	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CKO_04135	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CKO_04135	PWY-7177	UTP and CTP dephosphorylation II
CKO_04135	PWY-7185	UTP and CTP dephosphorylation I
CKO_04141	PWY-6499	D-glucarate degradation II
CKO_04150	PWY-6700	queuosine biosynthesis
CKO_04159	PWY-5197	lactate biosynthesis (archaea)
CKO_04163	PWY-4261	glycerol degradation I
CKO_04174	PWY-6823	molybdenum cofactor biosynthesis
CKO_04174	PWY-6891	thiazole biosynthesis II (Bacillus)
CKO_04174	PWY-6892	thiazole biosynthesis I (E. coli)
CKO_04174	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CKO_04183	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKO_04194	PWY-3841	folate transformations II
CKO_04194	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CKO_04194	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKO_04194	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CKO_04194	PWY-7199	pyrimidine deoxyribonucleosides salvage
CKO_04194	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CKO_04208	PWY-6622	heptadecane biosynthesis
CKO_04208	PWY-7032	alkane biosynthesis I
CKO_04214	PWY-2941	L-lysine biosynthesis II
CKO_04214	PWY-2942	L-lysine biosynthesis III
CKO_04214	PWY-5097	L-lysine biosynthesis VI
CKO_04217	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKO_04217	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKO_04219	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CKO_04220	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CKO_04250	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
CKO_04250	PWY-6174	mevalonate pathway II (archaea)
CKO_04250	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
CKO_04250	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
CKO_04250	PWY-7102	bisabolene biosynthesis
CKO_04250	PWY-7391	isoprene biosynthesis II (engineered)
CKO_04250	PWY-7524	mevalonate pathway III (archaea)
CKO_04250	PWY-7560	methylerythritol phosphate pathway II
CKO_04250	PWY-922	mevalonate pathway I
CKO_04280	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CKO_04280	PWY-5723	Rubisco shunt
CKO_04290	PWY-5392	reductive TCA cycle II
CKO_04290	PWY-5537	pyruvate fermentation to acetate V
CKO_04290	PWY-5538	pyruvate fermentation to acetate VI
CKO_04290	PWY-5690	TCA cycle II (plants and fungi)
CKO_04290	PWY-5913	TCA cycle VI (obligate autotrophs)
CKO_04290	PWY-6728	methylaspartate cycle
CKO_04290	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKO_04290	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CKO_04295	PWY-1042	glycolysis IV (plant cytosol)
CKO_04295	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CKO_04295	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKO_04295	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CKO_04295	PWY-7385	1,3-propanediol biosynthesis (engineered)
CKO_04296	PWY-1042	glycolysis IV (plant cytosol)
CKO_04296	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKO_04296	PWY-6886	1-butanol autotrophic biosynthesis
CKO_04296	PWY-6901	superpathway of glucose and xylose degradation
CKO_04296	PWY-7003	glycerol degradation to butanol
CKO_04305	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKO_04307	PWY-7310	D-glucosaminate degradation
CKO_04309	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CKO_04309	PWY-5723	Rubisco shunt
CKO_04309	PWY-6891	thiazole biosynthesis II (Bacillus)
CKO_04309	PWY-6892	thiazole biosynthesis I (E. coli)
CKO_04309	PWY-6901	superpathway of glucose and xylose degradation
CKO_04309	PWY-7560	methylerythritol phosphate pathway II
CKO_04314	PWY-40	putrescine biosynthesis I
CKO_04314	PWY-6305	putrescine biosynthesis IV
CKO_04316	PWY-40	putrescine biosynthesis I
CKO_04316	PWY-43	putrescine biosynthesis II
CKO_04316	PWY-6305	putrescine biosynthesis IV
CKO_04316	PWY-6834	spermidine biosynthesis III
CKO_04317	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CKO_04317	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
CKO_04327	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKO_04330	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CKO_04340	PWY-46	putrescine biosynthesis III
CKO_04340	PWY-6305	putrescine biosynthesis IV
CKO_04402	PWY-6936	seleno-amino acid biosynthesis
CKO_04411	PWY-5667	CDP-diacylglycerol biosynthesis I
CKO_04411	PWY-5981	CDP-diacylglycerol biosynthesis III
CKO_04411	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
CKO_04411	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
CKO_04434	PWY-6167	flavin biosynthesis II (archaea)
CKO_04434	PWY-6168	flavin biosynthesis III (fungi)
CKO_04448	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CKO_04448	PWY-6148	tetrahydromethanopterin biosynthesis
CKO_04448	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CKO_04448	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CKO_04455	PWY-5704	urea degradation II
CKO_04456	PWY-5704	urea degradation II
CKO_04457	PWY-5704	urea degradation II
CKO_04473	PWY-6349	CDP-archaeol biosynthesis
CKO_04479	PWY-6131	glycerol degradation II
CKO_04486	PWY-2	putrescine degradation IV
CKO_04486	PWY-6440	spermine and spermidine degradation II
CKO_04494	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
CKO_04494	PWY-7248	pectin degradation III
CKO_04504	PWY-4061	glutathione-mediated detoxification I
CKO_04504	PWY-6842	glutathione-mediated detoxification II
CKO_04504	PWY-7112	4-hydroxy-2-nonenal detoxification
CKO_04504	PWY-7533	gliotoxin biosynthesis
CKO_04514	PWY-5480	pyruvate fermentation to ethanol I
CKO_04514	PWY-5485	pyruvate fermentation to acetate IV
CKO_04514	PWY-5493	reductive monocarboxylic acid cycle
CKO_04515	PWY-5437	L-threonine degradation I
CKO_04515	PWY-5482	pyruvate fermentation to acetate II
CKO_04515	PWY-5485	pyruvate fermentation to acetate IV
CKO_04515	PWY-5497	purine nucleobases degradation II (anaerobic)
CKO_04515	PWY-7013	L-1,2-propanediol degradation
CKO_04527	PWY-6497	D-galactarate degradation II
CKO_04531	PWY-7310	D-glucosaminate degradation
CKO_04535	PWY-6906	chitin derivatives degradation
CKO_04535	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
CKO_04535	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
CKO_04537	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
CKO_04537	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
CKO_04538	PWY-7310	D-glucosaminate degradation
CKO_04539	PWY-6936	seleno-amino acid biosynthesis
CKO_04553	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CKO_04553	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CKO_04553	PWY-6897	thiamin salvage II
CKO_04553	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CKO_04553	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CKO_04553	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
CKO_04553	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CKO_04574	PWY-4983	L-citrulline-nitric oxide cycle
CKO_04574	PWY-4984	urea cycle
CKO_04574	PWY-5	canavanine biosynthesis
CKO_04574	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKO_04574	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CKO_04577	PWY-6749	CMP-legionaminate biosynthesis I
CKO_04578	PWY-6614	tetrahydrofolate biosynthesis
CKO_04583	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKO_04583	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKO_04592	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKO_04592	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKO_04601	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CKO_04601	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CKO_04625	PWY-6138	CMP-<i>N</i>-acetylneuraminate biosynthesis I (eukaryotes)
CKO_04629	PWY-2941	L-lysine biosynthesis II
CKO_04629	PWY-2942	L-lysine biosynthesis III
CKO_04629	PWY-5097	L-lysine biosynthesis VI
CKO_04641	PWY-1622	formaldehyde assimilation I (serine pathway)
CKO_04641	PWY-5392	reductive TCA cycle II
CKO_04641	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CKO_04641	PWY-5690	TCA cycle II (plants and fungi)
CKO_04641	PWY-5913	TCA cycle VI (obligate autotrophs)
CKO_04641	PWY-6728	methylaspartate cycle
CKO_04641	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKO_04641	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CKO_04641	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKO_04665	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CKO_04665	PWY-6416	quinate degradation II
CKO_04665	PWY-6707	gallate biosynthesis
CKO_04694	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CKO_04759	PWY-6785	hydrogen production VIII
CKO_04763	PWY-5796	malonate decarboxylase activation
CKO_04765	PWY-6060	malonate degradation II (biotin-dependent)
CKO_04766	PWY-4381	fatty acid biosynthesis initiation I
CKO_04766	PWY-5743	3-hydroxypropanoate cycle
CKO_04766	PWY-5744	glyoxylate assimilation
CKO_04766	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKO_04766	PWY-6060	malonate degradation II (biotin-dependent)
CKO_04766	PWY-6679	jadomycin biosynthesis
CKO_04766	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CKO_04768	PWY-5796	malonate decarboxylase activation
CKO_04769	PWY-5794	malonate degradation I (biotin-independent)
CKO_04769	PWY-6060	malonate degradation II (biotin-dependent)
CKO_04773	PWY-5723	Rubisco shunt
CKO_04782	PWY-5958	acridone alkaloid biosynthesis
CKO_04782	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CKO_04782	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CKO_04789	PWY-6683	sulfate reduction III (assimilatory)
CKO_04792	PWY-5194	siroheme biosynthesis
CKO_04792	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CKO_04800	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CKO_04801	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKO_04806	PWY-181	photorespiration
CKO_04807	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CKO_04807	PWY-5723	Rubisco shunt
CKO_04811	PWY-6164	3-dehydroquinate biosynthesis I
CKO_04812	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CKO_04825	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CKO_04825	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CKO_04834	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CKO_04837	PWY-5941	glycogen degradation II (eukaryotic)
CKO_04837	PWY-6724	starch degradation II
CKO_04837	PWY-6737	starch degradation V
CKO_04837	PWY-7238	sucrose biosynthesis II
CKO_04838	PWY-5941	glycogen degradation II (eukaryotic)
CKO_04838	PWY-622	starch biosynthesis
CKO_04838	PWY-6731	starch degradation III
CKO_04838	PWY-6737	starch degradation V
CKO_04838	PWY-7238	sucrose biosynthesis II
CKO_04844	PWY-5350	thiosulfate disproportionation III (rhodanese)
CKO_04845	PWY-4261	glycerol degradation I
CKO_04845	PWY-6118	glycerol-3-phosphate shuttle
CKO_04845	PWY-6952	glycerophosphodiester degradation
CKO_04847	PWY-5941	glycogen degradation II (eukaryotic)
CKO_04847	PWY-622	starch biosynthesis
CKO_04847	PWY-6731	starch degradation III
CKO_04847	PWY-6737	starch degradation V
CKO_04847	PWY-7238	sucrose biosynthesis II
CKO_04848	PWY-622	starch biosynthesis
CKO_04849	PWY-622	starch biosynthesis
CKO_04851	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
CKO_04851	PWY-622	starch biosynthesis
CKO_04853	PWY-2941	L-lysine biosynthesis II
CKO_04853	PWY-2942	L-lysine biosynthesis III
CKO_04853	PWY-5097	L-lysine biosynthesis VI
CKO_04853	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKO_04853	PWY-6559	spermidine biosynthesis II
CKO_04853	PWY-6562	norspermidine biosynthesis
CKO_04853	PWY-7153	grixazone biosynthesis
CKO_04853	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CKO_04856	PWY-5530	sorbitol biosynthesis II
CKO_04856	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CKO_04868	PWY-4041	&gamma;-glutamyl cycle
CKO_04868	PWY-5826	hypoglycin biosynthesis
CKO_04915	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CKO_04915	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CKO_04915	PWY-5989	stearate biosynthesis II (bacteria and plants)
CKO_04915	PWY-5994	palmitate biosynthesis I (animals and fungi)
CKO_04915	PWY-6113	superpathway of mycolate biosynthesis
CKO_04915	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CKO_04915	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CKO_04915	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CKO_04915	PWYG-321	mycolate biosynthesis
CKO_04923	PWY-5367	petroselinate biosynthesis
CKO_04923	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CKO_04923	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CKO_04923	PWY-5989	stearate biosynthesis II (bacteria and plants)
CKO_04923	PWY-5994	palmitate biosynthesis I (animals and fungi)
CKO_04923	PWY-6113	superpathway of mycolate biosynthesis
CKO_04923	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CKO_04923	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CKO_04923	PWY-6951	CKO_04923|fabG|YP_001456403.1|GeneID:5582577
CKO_04923	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
CKO_04923	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CKO_04923	PWYG-321	mycolate biosynthesis
CKO_04925	PWY-6012	acyl carrier protein metabolism I
CKO_04925	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CKO_04956	PWY-4081	glutathione redox reactions I
CKO_04974	PWY-6788	cellulose degradation II (fungi)
CKO_04977	PWY-1001	cellulose biosynthesis
CKO_05009	PWY-1622	formaldehyde assimilation I (serine pathway)
CKO_05020	PWY-4261	glycerol degradation I
CKO_05029	PWY-842	starch degradation I
CKO_05033	PWY-6961	L-ascorbate degradation II (bacterial, aerobic)
CKO_05037	PWY-4261	glycerol degradation I
CKO_05039	PWY-5686	UMP biosynthesis
CKO_05040	PWY-6961	L-ascorbate degradation II (bacterial, aerobic)
CKO_05041	PWY-6961	L-ascorbate degradation II (bacterial, aerobic)
CKO_05054	PWY-7310	D-glucosaminate degradation
CKO_05064	PWY-6936	seleno-amino acid biosynthesis
CKO_05064	PWY-7274	D-cycloserine biosynthesis
CKO_05065	PWY-5667	CDP-diacylglycerol biosynthesis I
CKO_05065	PWY-5981	CDP-diacylglycerol biosynthesis III
CKO_05070	PWY-1042	glycolysis IV (plant cytosol)
CKO_05070	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CKO_05070	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKO_05070	PWY-5723	Rubisco shunt
CKO_05070	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CKO_05070	PWY-6886	1-butanol autotrophic biosynthesis
CKO_05070	PWY-6901	superpathway of glucose and xylose degradation
CKO_05070	PWY-7003	glycerol degradation to butanol
CKO_05070	PWY-7124	ethylene biosynthesis V (engineered)
CKO_05070	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CKO_05076	PWY-7378	aminopropanol phosphate biosynthesis II
CKO_05097	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CKO_05097	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CKO_05097	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKO_05097	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CKO_05100	PWY-5686	UMP biosynthesis
CKO_05105	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CKO_05127	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CKO_05127	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CKO_05127	PWY-7242	D-fructuronate degradation
CKO_05127	PWY-7310	D-glucosaminate degradation
CKO_05128	PWY-7310	D-glucosaminate degradation
CKO_05131	PWY-7310	D-glucosaminate degradation
CKO_05139	PWY-2941	L-lysine biosynthesis II
CKO_05139	PWY-2942	L-lysine biosynthesis III
CKO_05139	PWY-5097	L-lysine biosynthesis VI
