CLI_0026	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CLI_0038	PWY-5669	phosphatidylethanolamine biosynthesis I
CLI_0111	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CLI_0111	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CLI_0111	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLI_0111	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CLI_0111	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CLI_0111	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CLI_0122	PWY-4981	L-proline biosynthesis II (from arginine)
CLI_0123	PWY-7560	methylerythritol phosphate pathway II
CLI_0149	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLI_0149	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLI_0149	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLI_0174	PWY-7052	cyanophycin metabolism
CLI_0175	PWY-7052	cyanophycin metabolism
CLI_0176	PWY-7560	methylerythritol phosphate pathway II
CLI_0182	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CLI_0182	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CLI_0182	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CLI_0182	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CLI_0187	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CLI_0187	PWY-7177	UTP and CTP dephosphorylation II
CLI_0187	PWY-7185	UTP and CTP dephosphorylation I
CLI_0189	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CLI_0191	PWY-7199	pyrimidine deoxyribonucleosides salvage
CLI_0200	PWY-7183	pyrimidine nucleobases salvage I
CLI_0201	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CLI_0202	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CLI_0202	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CLI_0202	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CLI_0203	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
CLI_0209	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CLI_0211	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CLI_0214	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLI_0214	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLI_0231	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CLI_0231	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
CLI_0258	PWY-1042	glycolysis IV (plant cytosol)
CLI_0258	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CLI_0258	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLI_0258	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLI_0258	PWY-7385	1,3-propanediol biosynthesis (engineered)
CLI_0263	PWY-5669	phosphatidylethanolamine biosynthesis I
CLI_0270	PWY-6936	seleno-amino acid biosynthesis
CLI_0271	PWY-6936	seleno-amino acid biosynthesis
CLI_0271	PWY-7274	D-cycloserine biosynthesis
CLI_0291	PWY-1042	glycolysis IV (plant cytosol)
CLI_0291	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLI_0291	PWY-6901	superpathway of glucose and xylose degradation
CLI_0291	PWY-7003	glycerol degradation to butanol
CLI_0292	PWY-1042	glycolysis IV (plant cytosol)
CLI_0292	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLI_0292	PWY-6886	1-butanol autotrophic biosynthesis
CLI_0292	PWY-6901	superpathway of glucose and xylose degradation
CLI_0292	PWY-7003	glycerol degradation to butanol
CLI_0293	PWY-1042	glycolysis IV (plant cytosol)
CLI_0293	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLI_0293	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLI_0293	PWY-7003	glycerol degradation to butanol
CLI_0294	PWY-1042	glycolysis IV (plant cytosol)
CLI_0294	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CLI_0294	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLI_0294	PWY-5723	Rubisco shunt
CLI_0294	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLI_0294	PWY-6886	1-butanol autotrophic biosynthesis
CLI_0294	PWY-6901	superpathway of glucose and xylose degradation
CLI_0294	PWY-7003	glycerol degradation to butanol
CLI_0294	PWY-7124	ethylene biosynthesis V (engineered)
CLI_0294	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CLI_0295	PWY-1042	glycolysis IV (plant cytosol)
CLI_0295	PWY-1622	formaldehyde assimilation I (serine pathway)
CLI_0295	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CLI_0295	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLI_0295	PWY-5723	Rubisco shunt
CLI_0295	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLI_0295	PWY-6886	1-butanol autotrophic biosynthesis
CLI_0295	PWY-6901	superpathway of glucose and xylose degradation
CLI_0295	PWY-7003	glycerol degradation to butanol
CLI_0295	PWY-7124	ethylene biosynthesis V (engineered)
CLI_0295	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CLI_0298	PWY-5381	pyridine nucleotide cycling (plants)
CLI_0298	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CLI_0298	PWY-6596	adenosine nucleotides degradation I
CLI_0298	PWY-6606	guanosine nucleotides degradation II
CLI_0298	PWY-6607	guanosine nucleotides degradation I
CLI_0298	PWY-6608	guanosine nucleotides degradation III
CLI_0298	PWY-7185	UTP and CTP dephosphorylation I
CLI_0303	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLI_0303	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLI_0339	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLI_0339	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLI_0341	PWY-7310	D-glucosaminate degradation
CLI_0350	PWY-7310	D-glucosaminate degradation
CLI_0361	PWY-7310	D-glucosaminate degradation
CLI_0364	PWY-5101	L-isoleucine biosynthesis II
CLI_0364	PWY-5103	L-isoleucine biosynthesis III
CLI_0364	PWY-5104	L-isoleucine biosynthesis IV
CLI_0364	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CLI_0365	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CLI_0365	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CLI_0365	PWY-7242	D-fructuronate degradation
CLI_0365	PWY-7310	D-glucosaminate degradation
CLI_0367	PWY-6610	adenine and adenosine salvage IV
CLI_0416	PWY-3162	L-tryptophan degradation V (side chain pathway)
CLI_0416	PWY-5057	L-valine degradation II
CLI_0416	PWY-5076	L-leucine degradation III
CLI_0416	PWY-5078	L-isoleucine degradation II
CLI_0416	PWY-5079	L-phenylalanine degradation III
CLI_0416	PWY-5082	L-methionine degradation III
CLI_0416	PWY-5162	2-oxopentenoate degradation
CLI_0416	PWY-5436	L-threonine degradation IV
CLI_0416	PWY-5480	pyruvate fermentation to ethanol I
CLI_0416	PWY-5486	pyruvate fermentation to ethanol II
CLI_0416	PWY-5751	phenylethanol biosynthesis
CLI_0416	PWY-6028	acetoin degradation
CLI_0416	PWY-6313	serotonin degradation
CLI_0416	PWY-6333	acetaldehyde biosynthesis I
CLI_0416	PWY-6342	noradrenaline and adrenaline degradation
CLI_0416	PWY-6587	pyruvate fermentation to ethanol III
CLI_0416	PWY-6802	salidroside biosynthesis
CLI_0416	PWY-6871	3-methylbutanol biosynthesis
CLI_0416	PWY-7013	L-1,2-propanediol degradation
CLI_0416	PWY-7085	triethylamine degradation
CLI_0416	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CLI_0416	PWY-7118	chitin degradation to ethanol
CLI_0416	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CLI_0416	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CLI_0416	PWY-7557	dehydrodiconiferyl alcohol degradation
CLI_0487	PWY-3861	mannitol degradation II
CLI_0487	PWY-3881	mannitol biosynthesis
CLI_0487	PWY-5659	GDP-mannose biosynthesis
CLI_0487	PWY-7456	mannan degradation
CLI_0487	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CLI_0501	PWY-5667	CDP-diacylglycerol biosynthesis I
CLI_0501	PWY-5981	CDP-diacylglycerol biosynthesis III
CLI_0501	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
CLI_0501	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
CLI_0508	PWY-5155	&beta;-alanine biosynthesis III
CLI_0510	PWY-6654	phosphopantothenate biosynthesis III
CLI_0534	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CLI_0534	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CLI_0534	PWY-6897	thiamin salvage II
CLI_0534	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CLI_0534	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CLI_0534	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
CLI_0534	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CLI_0535	PWY-6897	thiamin salvage II
CLI_0535	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
CLI_0535	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CLI_0536	PWY-6910	hydroxymethylpyrimidine salvage
CLI_0536	PWY-7356	thiamin salvage IV (yeast)
CLI_0536	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CLI_0538	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLI_0538	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLI_0591	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CLI_0596	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLI_0601	PWY-6854	ethylene biosynthesis III (microbes)
CLI_0616	PWY-5381	pyridine nucleotide cycling (plants)
CLI_0616	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CLI_0692	PWY-7310	D-glucosaminate degradation
CLI_0727	PWY-5199	factor 420 polyglutamylation
CLI_0731	PWY-7310	D-glucosaminate degradation
CLI_0769	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CLI_0769	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CLI_0770	PWY-6984	lipoate salvage II
CLI_0770	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CLI_0770	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CLI_0806	PWY-4381	fatty acid biosynthesis initiation I
CLI_0813	PWY-6936	seleno-amino acid biosynthesis
CLI_0814	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CLI_0814	PWY-6153	autoinducer AI-2 biosynthesis I
CLI_0814	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
CLI_0818	PWY-6902	chitin degradation II
CLI_0835	PWY-4621	arsenate detoxification II (glutaredoxin)
CLI_0854	PWY-3841	folate transformations II
CLI_0854	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CLI_0854	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLI_0854	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CLI_0854	PWY-7199	pyrimidine deoxyribonucleosides salvage
CLI_0854	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CLI_0857	PWY-6910	hydroxymethylpyrimidine salvage
CLI_0857	PWY-7356	thiamin salvage IV (yeast)
CLI_0857	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CLI_0877	PWY-2941	L-lysine biosynthesis II
CLI_0877	PWY-2942	L-lysine biosynthesis III
CLI_0877	PWY-5097	L-lysine biosynthesis VI
CLI_0900	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CLI_0900	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CLI_0900	PWY-6269	adenosylcobalamin salvage from cobinamide II
CLI_0902	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CLI_0902	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CLI_0902	PWY-6269	adenosylcobalamin salvage from cobinamide II
CLI_0910	PWY-6614	tetrahydrofolate biosynthesis
CLI_0912	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CLI_0912	PWY-6148	tetrahydromethanopterin biosynthesis
CLI_0912	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CLI_0912	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CLI_0942	PWY-6698	oxalate degradation V
CLI_0962	PWY-7310	D-glucosaminate degradation
CLI_0965	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CLI_0965	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CLI_0965	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CLI_0979	PWY-43	putrescine biosynthesis II
CLI_0996	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CLI_0996	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CLI_0996	PWY-6269	adenosylcobalamin salvage from cobinamide II
CLI_1006	PWY-5194	siroheme biosynthesis
CLI_1006	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CLI_1007	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CLI_1007	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CLI_1008	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CLI_1008	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CLI_1008	PWY-5194	siroheme biosynthesis
CLI_1008	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CLI_1010	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CLI_1010	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CLI_1023	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CLI_1026	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CLI_1036	PWY-5194	siroheme biosynthesis
CLI_1036	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CLI_1037	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CLI_1042	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CLI_1043	PWY-5443	aminopropanol phosphate biosynthesis I
CLI_1044	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CLI_1044	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CLI_1044	PWY-6268	adenosylcobalamin salvage from cobalamin
CLI_1044	PWY-6269	adenosylcobalamin salvage from cobinamide II
CLI_1049	PWY-6683	sulfate reduction III (assimilatory)
CLI_1062	PWY-6349	CDP-archaeol biosynthesis
CLI_1072	PWY-6609	adenine and adenosine salvage III
CLI_1072	PWY-6611	adenine and adenosine salvage V
CLI_1072	PWY-7179	purine deoxyribonucleosides degradation I
CLI_1072	PWY-7179-1	purine deoxyribonucleosides degradation
CLI_1091	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLI_1091	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLI_1095	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
CLI_1095	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
CLI_1097	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
CLI_1097	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
CLI_1105	PWY-5269	cardiolipin biosynthesis II
CLI_1105	PWY-5668	cardiolipin biosynthesis I
CLI_1149	PWY-6902	chitin degradation II
CLI_1183	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CLI_1184	PWY-1042	glycolysis IV (plant cytosol)
CLI_1184	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLI_1184	PWY-6901	superpathway of glucose and xylose degradation
CLI_1184	PWY-7003	glycerol degradation to butanol
CLI_1205	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CLI_1205	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CLI_1212	PWY-6832	2-aminoethylphosphonate degradation II
CLI_1247	PWY-5913	TCA cycle VI (obligate autotrophs)
CLI_1247	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CLI_1247	PWY-6638	sulfolactate degradation III
CLI_1247	PWY-6642	(<i>R</i>)-cysteate degradation
CLI_1247	PWY-6643	coenzyme M biosynthesis II
CLI_1247	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CLI_1247	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CLI_1247	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CLI_1251	PWY-6019	pseudouridine degradation
CLI_1252	PWY-6654	phosphopantothenate biosynthesis III
CLI_1253	PWY-5030	L-histidine degradation III
CLI_1253	PWY-5497	purine nucleobases degradation II (anaerobic)
CLI_1254	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CLI_1254	PWY-2201	folate transformations I
CLI_1254	PWY-3841	folate transformations II
CLI_1254	PWY-5030	L-histidine degradation III
CLI_1254	PWY-5497	purine nucleobases degradation II (anaerobic)
CLI_1254	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CLI_1261	PWY-6936	seleno-amino acid biosynthesis
CLI_1264	PWY-6823	molybdenum cofactor biosynthesis
CLI_1264	PWY-6891	thiazole biosynthesis II (Bacillus)
CLI_1264	PWY-6892	thiazole biosynthesis I (E. coli)
CLI_1264	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CLI_1286	PWY-6724	starch degradation II
CLI_1286	PWY-842	starch degradation I
CLI_1294	PWY-6902	chitin degradation II
CLI_1305	PWY-7533	gliotoxin biosynthesis
CLI_1325	PWY-7310	D-glucosaminate degradation
CLI_1347	PWY-4381	fatty acid biosynthesis initiation I
CLI_1352	PWY-6754	<i>S</i>-methyl-5'-thioadenosine degradation I
CLI_1353	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CLI_1353	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
CLI_1378	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CLI_1378	PWY-5723	Rubisco shunt
CLI_1421	PWY-7310	D-glucosaminate degradation
CLI_1426	PWY-5372	carbon tetrachloride degradation II
CLI_1426	PWY-6780	hydrogen production VI
CLI_1444	PWY-7310	D-glucosaminate degradation
CLI_1486	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CLI_1486	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CLI_1497	PWY-6936	seleno-amino acid biosynthesis
CLI_1508	PWY-5381	pyridine nucleotide cycling (plants)
CLI_1531	PWY-5316	nicotine biosynthesis
CLI_1531	PWY-5381	pyridine nucleotide cycling (plants)
CLI_1531	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CLI_1531	PWY-7342	superpathway of nicotine biosynthesis
CLI_1533	PWY-5316	nicotine biosynthesis
CLI_1533	PWY-7342	superpathway of nicotine biosynthesis
CLI_1542	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLI_1542	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLI_1543	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CLI_1543	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CLI_1543	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CLI_1549	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CLI_1554	PWY-6164	3-dehydroquinate biosynthesis I
CLI_1555	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CLI_1555	PWY-6153	autoinducer AI-2 biosynthesis I
CLI_1555	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
CLI_1556	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CLI_1556	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CLI_1556	PWY-6164	3-dehydroquinate biosynthesis I
CLI_1557	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CLI_1561	PWY-7183	pyrimidine nucleobases salvage I
CLI_1565	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CLI_1565	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLI_1565	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CLI_1565	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CLI_1572	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CLI_1572	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CLI_1576	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CLI_1576	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CLI_1578	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CLI_1578	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CLI_1579	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CLI_1579	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CLI_1599	PWY-5481	pyruvate fermentation to lactate
CLI_1599	PWY-6901	superpathway of glucose and xylose degradation
CLI_1637	PWY-6703	preQ<sub>0</sub> biosynthesis
CLI_1638	PWY-5663	tetrahydrobiopterin biosynthesis I
CLI_1638	PWY-5664	tetrahydrobiopterin biosynthesis II
CLI_1638	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CLI_1638	PWY-6703	preQ<sub>0</sub> biosynthesis
CLI_1638	PWY-6983	tetrahydrobiopterin biosynthesis III
CLI_1638	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CLI_1639	PWY-6703	preQ<sub>0</sub> biosynthesis
CLI_1645	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CLI_1668	PWY-4981	L-proline biosynthesis II (from arginine)
CLI_1684	PWY-842	starch degradation I
CLI_1685	PWY-7310	D-glucosaminate degradation
CLI_1688	PWY-5663	tetrahydrobiopterin biosynthesis I
CLI_1688	PWY-5664	tetrahydrobiopterin biosynthesis II
CLI_1688	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CLI_1688	PWY-6703	preQ<sub>0</sub> biosynthesis
CLI_1688	PWY-6983	tetrahydrobiopterin biosynthesis III
CLI_1688	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CLI_1699	PWY-2201	folate transformations I
CLI_1699	PWY-3841	folate transformations II
CLI_1700	PWY-2201	folate transformations I
CLI_1700	PWY-3841	folate transformations II
CLI_1709	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CLI_1709	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CLI_1709	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CLI_1711	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CLI_1711	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CLI_1712	PWY-6984	lipoate salvage II
CLI_1712	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CLI_1712	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CLI_1716	PWY-702	L-methionine biosynthesis II
CLI_1717	PWY-2941	L-lysine biosynthesis II
CLI_1717	PWY-2942	L-lysine biosynthesis III
CLI_1717	PWY-5097	L-lysine biosynthesis VI
CLI_1717	PWY-6559	spermidine biosynthesis II
CLI_1717	PWY-6562	norspermidine biosynthesis
CLI_1717	PWY-7153	grixazone biosynthesis
CLI_1722	PWY-101	photosynthesis light reactions
CLI_1722	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
CLI_1734	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CLI_1758	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
CLI_1758	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
CLI_1771	PWY-6683	sulfate reduction III (assimilatory)
CLI_1793	PWY-2781	<i>cis</i>-zeatin biosynthesis
CLI_1802	PWY-7560	methylerythritol phosphate pathway II
CLI_1803	PWY-7205	CMP phosphorylation
CLI_1804	PWY-3461	L-tyrosine biosynthesis II
CLI_1804	PWY-3462	L-phenylalanine biosynthesis II
CLI_1804	PWY-6120	L-tyrosine biosynthesis III
CLI_1804	PWY-6627	salinosporamide A biosynthesis
CLI_1839	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CLI_1839	PWY-5686	UMP biosynthesis
CLI_1839	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CLI_1840	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CLI_1840	PWY-5686	UMP biosynthesis
CLI_1840	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CLI_1855	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CLI_1855	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CLI_1861	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CLI_1861	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CLI_1865	PWY-7181	pyrimidine deoxyribonucleosides degradation
CLI_1866	PWY-4202	arsenate detoxification I (glutaredoxin)
CLI_1866	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CLI_1866	PWY-6608	guanosine nucleotides degradation III
CLI_1866	PWY-6609	adenine and adenosine salvage III
CLI_1866	PWY-6611	adenine and adenosine salvage V
CLI_1866	PWY-6620	guanine and guanosine salvage
CLI_1866	PWY-6627	salinosporamide A biosynthesis
CLI_1866	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
CLI_1866	PWY-7179	purine deoxyribonucleosides degradation I
CLI_1866	PWY-7179-1	purine deoxyribonucleosides degradation
CLI_1940	PWY-5344	L-homocysteine biosynthesis
CLI_1940	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
CLI_1943	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CLI_1943	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CLI_1943	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CLI_1945	PWY-6891	thiazole biosynthesis II (Bacillus)
CLI_1945	PWY-6892	thiazole biosynthesis I (E. coli)
CLI_1945	PWY-7560	methylerythritol phosphate pathway II
CLI_1962	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CLI_1962	PWY-6416	quinate degradation II
CLI_1962	PWY-6707	gallate biosynthesis
CLI_1963	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CLI_1976	PWY-2941	L-lysine biosynthesis II
CLI_1976	PWY-5097	L-lysine biosynthesis VI
CLI_1981	PWY-4321	L-glutamate degradation IV
CLI_1999	PWY-0	putrescine degradation III
CLI_1999	PWY-6117	spermine and spermidine degradation I
CLI_2007	PWY-6823	molybdenum cofactor biosynthesis
CLI_2008	PWY-6823	molybdenum cofactor biosynthesis
CLI_2009	PWY-6823	molybdenum cofactor biosynthesis
CLI_2030	PWY-6936	seleno-amino acid biosynthesis
CLI_2040	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CLI_2053	PWY-7310	D-glucosaminate degradation
CLI_2058	PWY-7310	D-glucosaminate degradation
CLI_2060	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
CLI_2060	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
CLI_2065	PWY-6349	CDP-archaeol biosynthesis
CLI_2069	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CLI_2086	PWY-6832	2-aminoethylphosphonate degradation II
CLI_2116	PWY-3221	dTDP-L-rhamnose biosynthesis II
CLI_2116	PWY-6808	dTDP-D-forosamine biosynthesis
CLI_2116	PWY-6942	dTDP-D-desosamine biosynthesis
CLI_2116	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CLI_2116	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CLI_2116	PWY-6974	dTDP-L-olivose biosynthesis
CLI_2116	PWY-6976	dTDP-L-mycarose biosynthesis
CLI_2116	PWY-7104	dTDP-L-megosamine biosynthesis
CLI_2116	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CLI_2116	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CLI_2116	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CLI_2116	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CLI_2116	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CLI_2116	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CLI_2116	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CLI_2116	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CLI_2123	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CLI_2123	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CLI_2123	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CLI_2123	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CLI_2150	PWY-5437	L-threonine degradation I
CLI_2150	PWY-7013	L-1,2-propanediol degradation
CLI_2192	PWY-6164	3-dehydroquinate biosynthesis I
CLI_2196	PWY-7310	D-glucosaminate degradation
CLI_2198	PWY-7310	D-glucosaminate degradation
CLI_2200	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CLI_2200	PWY-5723	Rubisco shunt
CLI_2261	PWY-5506	methanol oxidation to formaldehyde IV
CLI_2267	PWY-5372	carbon tetrachloride degradation II
CLI_2267	PWY-6780	hydrogen production VI
CLI_2293	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CLI_2293	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CLI_2303	PWY-6897	thiamin salvage II
CLI_2303	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
CLI_2303	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CLI_2308	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CLI_2309	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CLI_2331	PWY-6854	ethylene biosynthesis III (microbes)
CLI_2451	PWY-6123	inosine-5'-phosphate biosynthesis I
CLI_2451	PWY-6124	inosine-5'-phosphate biosynthesis II
CLI_2451	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CLI_2451	PWY-7234	inosine-5'-phosphate biosynthesis III
CLI_2461	PWY-5269	cardiolipin biosynthesis II
CLI_2461	PWY-5668	cardiolipin biosynthesis I
CLI_2465	PWY-2941	L-lysine biosynthesis II
CLI_2465	PWY-2942	L-lysine biosynthesis III
CLI_2465	PWY-5097	L-lysine biosynthesis VI
CLI_2465	PWY-6559	spermidine biosynthesis II
CLI_2465	PWY-6562	norspermidine biosynthesis
CLI_2465	PWY-7153	grixazone biosynthesis
CLI_2470	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CLI_2470	PWY-6167	flavin biosynthesis II (archaea)
CLI_2470	PWY-6168	flavin biosynthesis III (fungi)
CLI_2480	PWY-7560	methylerythritol phosphate pathway II
CLI_2482	PWY-7560	methylerythritol phosphate pathway II
CLI_2501	PWY-6829	tRNA methylation (yeast)
CLI_2501	PWY-7285	methylwyosine biosynthesis
CLI_2501	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CLI_2516	PWY-5482	pyruvate fermentation to acetate II
CLI_2516	PWY-5485	pyruvate fermentation to acetate IV
CLI_2516	PWY-5497	purine nucleobases degradation II (anaerobic)
CLI_2517	PWY-1281	sulfoacetaldehyde degradation I
CLI_2517	PWY-5482	pyruvate fermentation to acetate II
CLI_2517	PWY-5485	pyruvate fermentation to acetate IV
CLI_2517	PWY-5497	purine nucleobases degradation II (anaerobic)
CLI_2517	PWY-6637	sulfolactate degradation II
CLI_2562	PWY-6898	thiamin salvage III
CLI_2562	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CLI_2562	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CLI_2563	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CLI_2563	PWY-5723	Rubisco shunt
CLI_2575	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CLI_2581	PWY-5667	CDP-diacylglycerol biosynthesis I
CLI_2581	PWY-5981	CDP-diacylglycerol biosynthesis III
CLI_2602	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CLI_2617	PWY-7193	pyrimidine ribonucleosides salvage I
CLI_2631	PWY-6823	molybdenum cofactor biosynthesis
CLI_2631	PWY-6891	thiazole biosynthesis II (Bacillus)
CLI_2631	PWY-6892	thiazole biosynthesis I (E. coli)
CLI_2631	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CLI_2648	PWY-4381	fatty acid biosynthesis initiation I
CLI_2655	PWY-6012	acyl carrier protein metabolism I
CLI_2655	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CLI_2656	PWY-4981	L-proline biosynthesis II (from arginine)
CLI_2656	PWY-4984	urea cycle
CLI_2656	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CLI_2658	PWY-1622	formaldehyde assimilation I (serine pathway)
CLI_2658	PWY-181	photorespiration
CLI_2658	PWY-2161	folate polyglutamylation
CLI_2658	PWY-2201	folate transformations I
CLI_2658	PWY-3661	glycine betaine degradation I
CLI_2658	PWY-3661-1	glycine betaine degradation II (mammalian)
CLI_2658	PWY-3841	folate transformations II
CLI_2658	PWY-5497	purine nucleobases degradation II (anaerobic)
CLI_2679	PWY-5350	thiosulfate disproportionation III (rhodanese)
CLI_2680	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLI_2689	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CLI_2690	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CLI_2702	PWY-1281	sulfoacetaldehyde degradation I
CLI_2702	PWY-5482	pyruvate fermentation to acetate II
CLI_2702	PWY-5485	pyruvate fermentation to acetate IV
CLI_2702	PWY-5497	purine nucleobases degradation II (anaerobic)
CLI_2702	PWY-6637	sulfolactate degradation II
CLI_2726	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CLI_2735	PWY-4983	L-citrulline-nitric oxide cycle
CLI_2735	PWY-4984	urea cycle
CLI_2735	PWY-5	canavanine biosynthesis
CLI_2735	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CLI_2735	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CLI_2736	PWY-4983	L-citrulline-nitric oxide cycle
CLI_2736	PWY-4984	urea cycle
CLI_2736	PWY-5	canavanine biosynthesis
CLI_2736	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CLI_2736	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CLI_2746	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CLI_2746	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CLI_2746	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CLI_2746	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CLI_2746	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CLI_2746	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CLI_2750	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CLI_2750	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CLI_2773	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CLI_2773	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CLI_2804	PWY-7310	D-glucosaminate degradation
CLI_2811	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CLI_2811	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CLI_2811	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CLI_2811	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CLI_2829	PWY-3821	galactose degradation III
CLI_2829	PWY-6317	galactose degradation I (Leloir pathway)
CLI_2829	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CLI_2829	PWY-6527	stachyose degradation
CLI_2829	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CLI_2829	PWY-7344	UDP-D-galactose biosynthesis
CLI_2834	PWY-4261	glycerol degradation I
CLI_2850	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
CLI_2863	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CLI_2863	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CLI_2863	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CLI_2863	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CLI_2863	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLI_2863	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLI_2863	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CLI_2863	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CLI_2864	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CLI_2864	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CLI_2864	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CLI_2864	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CLI_2864	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLI_2864	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLI_2864	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CLI_2864	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CLI_2870	PWY-7183	pyrimidine nucleobases salvage I
CLI_2881	PWY-6902	chitin degradation II
CLI_2882	PWY-6902	chitin degradation II
CLI_2883	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CLI_2883	PWY-6855	chitin degradation I (archaea)
CLI_2883	PWY-6906	chitin derivatives degradation
CLI_2884	PWY-6906	chitin derivatives degradation
CLI_2884	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
CLI_2884	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
CLI_2891	PWY-7310	D-glucosaminate degradation
CLI_2903	PWY-7310	D-glucosaminate degradation
CLI_2911	PWY-6828	linezolid resistance
CLI_2919	PWY-6167	flavin biosynthesis II (archaea)
CLI_2919	PWY-6168	flavin biosynthesis III (fungi)
CLI_2920	PWY-6167	flavin biosynthesis II (archaea)
CLI_2920	PWY-6168	flavin biosynthesis III (fungi)
CLI_2920	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CLI_2921	PWY-6167	flavin biosynthesis II (archaea)
CLI_2921	PWY-6168	flavin biosynthesis III (fungi)
CLI_2921	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CLI_2930	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CLI_2930	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CLI_2930	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CLI_2931	PWY-6123	inosine-5'-phosphate biosynthesis I
CLI_2931	PWY-6124	inosine-5'-phosphate biosynthesis II
CLI_2931	PWY-7234	inosine-5'-phosphate biosynthesis III
CLI_2932	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CLI_2932	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CLI_2933	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CLI_2933	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CLI_2933	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CLI_2934	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CLI_2934	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CLI_2934	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CLI_2934	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CLI_2935	PWY-6123	inosine-5'-phosphate biosynthesis I
CLI_2935	PWY-6124	inosine-5'-phosphate biosynthesis II
CLI_2935	PWY-7234	inosine-5'-phosphate biosynthesis III
CLI_2936	PWY-6123	inosine-5'-phosphate biosynthesis I
CLI_2936	PWY-7234	inosine-5'-phosphate biosynthesis III
CLI_2941	PWY-5686	UMP biosynthesis
CLI_2947	PWY-6476	cytidylyl molybdenum cofactor biosynthesis
CLI_2950	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CLI_2950	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CLI_2950	PWY-7185	UTP and CTP dephosphorylation I
CLI_2950	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CLI_2950	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CLI_2967	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
CLI_2968	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CLI_2968	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CLI_2968	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CLI_2968	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CLI_2975	PWY-6167	flavin biosynthesis II (archaea)
CLI_2975	PWY-6168	flavin biosynthesis III (fungi)
CLI_2987	PWY-5663	tetrahydrobiopterin biosynthesis I
CLI_2987	PWY-5664	tetrahydrobiopterin biosynthesis II
CLI_2987	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CLI_2987	PWY-6703	preQ<sub>0</sub> biosynthesis
CLI_2987	PWY-6983	tetrahydrobiopterin biosynthesis III
CLI_2987	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CLI_2994	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CLI_2994	PWY-6549	L-glutamine biosynthesis III
CLI_2994	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CLI_2994	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CLI_2999	PWY-6556	pyrimidine ribonucleosides salvage II
CLI_2999	PWY-7181	pyrimidine deoxyribonucleosides degradation
CLI_2999	PWY-7193	pyrimidine ribonucleosides salvage I
CLI_2999	PWY-7199	pyrimidine deoxyribonucleosides salvage
CLI_3000	PWY-7039	phosphatidate metabolism, as a signaling molecule
CLI_3033	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CLI_3033	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CLI_3038	PWY-5381	pyridine nucleotide cycling (plants)
CLI_3038	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CLI_3069	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CLI_3119	PWY-6605	adenine and adenosine salvage II
CLI_3119	PWY-6610	adenine and adenosine salvage IV
CLI_3123	PWY-6823	molybdenum cofactor biosynthesis
CLI_3127	PWY-6700	queuosine biosynthesis
CLI_3128	PWY-6700	queuosine biosynthesis
CLI_3140	PWY-6599	guanine and guanosine salvage II
CLI_3140	PWY-6609	adenine and adenosine salvage III
CLI_3140	PWY-6610	adenine and adenosine salvage IV
CLI_3140	PWY-6620	guanine and guanosine salvage
CLI_3159	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
CLI_3166	PWY-5530	sorbitol biosynthesis II
CLI_3172	PWY-3801	sucrose degradation II (sucrose synthase)
CLI_3172	PWY-6527	stachyose degradation
CLI_3172	PWY-6981	chitin biosynthesis
CLI_3172	PWY-7238	sucrose biosynthesis II
CLI_3172	PWY-7343	UDP-glucose biosynthesis
CLI_3174	PWY-6749	CMP-legionaminate biosynthesis I
CLI_3178	PWY-1281	sulfoacetaldehyde degradation I
CLI_3178	PWY-5482	pyruvate fermentation to acetate II
CLI_3178	PWY-5485	pyruvate fermentation to acetate IV
CLI_3178	PWY-5497	purine nucleobases degradation II (anaerobic)
CLI_3178	PWY-6637	sulfolactate degradation II
CLI_3216	PWY-2941	L-lysine biosynthesis II
CLI_3216	PWY-2942	L-lysine biosynthesis III
CLI_3216	PWY-5097	L-lysine biosynthesis VI
CLI_3216	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CLI_3216	PWY-6559	spermidine biosynthesis II
CLI_3216	PWY-6562	norspermidine biosynthesis
CLI_3216	PWY-7153	grixazone biosynthesis
CLI_3216	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CLI_3217	PWY-2941	L-lysine biosynthesis II
CLI_3217	PWY-2942	L-lysine biosynthesis III
CLI_3217	PWY-5097	L-lysine biosynthesis VI
CLI_3218	PWY-2941	L-lysine biosynthesis II
CLI_3218	PWY-2942	L-lysine biosynthesis III
CLI_3218	PWY-5097	L-lysine biosynthesis VI
CLI_3220	PWY-2941	L-lysine biosynthesis II
CLI_3226	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CLI_3226	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CLI_3226	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CLI_3226	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CLI_3226	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLI_3226	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLI_3226	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CLI_3226	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CLI_3227	PWY-2161	folate polyglutamylation
CLI_3234	PWY-6823	molybdenum cofactor biosynthesis
CLI_3321	PWY-3341	L-proline biosynthesis III
CLI_3321	PWY-4981	L-proline biosynthesis II (from arginine)
CLI_3321	PWY-6344	L-ornithine degradation II (Stickland reaction)
CLI_3322	PWY-5480	pyruvate fermentation to ethanol I
CLI_3322	PWY-5485	pyruvate fermentation to acetate IV
CLI_3322	PWY-5493	reductive monocarboxylic acid cycle
CLI_3340	PWY-1361	benzoyl-CoA degradation I (aerobic)
CLI_3340	PWY-5109	2-methylbutanoate biosynthesis
CLI_3340	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CLI_3340	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CLI_3340	PWY-5177	glutaryl-CoA degradation
CLI_3340	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CLI_3340	PWY-6435	4-hydroxybenzoate biosynthesis V
CLI_3340	PWY-6583	pyruvate fermentation to butanol I
CLI_3340	PWY-6863	pyruvate fermentation to hexanol
CLI_3340	PWY-6883	pyruvate fermentation to butanol II
CLI_3340	PWY-6944	androstenedione degradation
CLI_3340	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CLI_3340	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CLI_3340	PWY-7007	methyl ketone biosynthesis
CLI_3340	PWY-7046	4-coumarate degradation (anaerobic)
CLI_3340	PWY-7094	fatty acid salvage
CLI_3340	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CLI_3340	PWY-735	jasmonic acid biosynthesis
CLI_3340	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CLI_3354	PWY-5480	pyruvate fermentation to ethanol I
CLI_3354	PWY-5485	pyruvate fermentation to acetate IV
CLI_3354	PWY-5493	reductive monocarboxylic acid cycle
CLI_3374	PWY-5686	UMP biosynthesis
CLI_3377	PWY-5686	UMP biosynthesis
CLI_3378	PWY-5686	UMP biosynthesis
CLI_3380	PWY-5686	UMP biosynthesis
CLI_3432	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CLI_3437	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CLI_3449	PWY-3801	sucrose degradation II (sucrose synthase)
CLI_3449	PWY-5054	sorbitol biosynthesis I
CLI_3449	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CLI_3449	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CLI_3449	PWY-5659	GDP-mannose biosynthesis
CLI_3449	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLI_3449	PWY-621	sucrose degradation III (sucrose invertase)
CLI_3449	PWY-622	starch biosynthesis
CLI_3449	PWY-6531	mannitol cycle
CLI_3449	PWY-6981	chitin biosynthesis
CLI_3449	PWY-7238	sucrose biosynthesis II
CLI_3449	PWY-7347	sucrose biosynthesis III
CLI_3449	PWY-7385	1,3-propanediol biosynthesis (engineered)
CLI_3465	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CLI_3466	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CLI_3466	PWY-6596	adenosine nucleotides degradation I
CLI_3466	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CLI_3474	PWY-101	photosynthesis light reactions
CLI_3474	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
CLI_3482	PWY-5750	itaconate biosynthesis
CLI_3482	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLI_3482	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
CLI_3509	PWY-2941	L-lysine biosynthesis II
CLI_3509	PWY-2942	L-lysine biosynthesis III
CLI_3509	PWY-5097	L-lysine biosynthesis VI
CLI_3510	PWY-2941	L-lysine biosynthesis II
CLI_3510	PWY-2942	L-lysine biosynthesis III
CLI_3510	PWY-5097	L-lysine biosynthesis VI
CLI_3510	PWY-6559	spermidine biosynthesis II
CLI_3510	PWY-6562	norspermidine biosynthesis
CLI_3510	PWY-7153	grixazone biosynthesis
CLI_3533	PWY-7310	D-glucosaminate degradation
CLI_3535	PWY-7310	D-glucosaminate degradation
CLI_3539	PWY-6834	spermidine biosynthesis III
CLI_3556	PWY-1042	glycolysis IV (plant cytosol)
CLI_3556	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CLI_3556	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLI_3556	PWY-5723	Rubisco shunt
CLI_3556	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLI_3556	PWY-6886	1-butanol autotrophic biosynthesis
CLI_3556	PWY-6901	superpathway of glucose and xylose degradation
CLI_3556	PWY-7003	glycerol degradation to butanol
CLI_3556	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CLI_3556	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CLI_3557	PWY-1042	glycolysis IV (plant cytosol)
CLI_3557	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CLI_3557	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLI_3557	PWY-7385	1,3-propanediol biosynthesis (engineered)
CLI_3562	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLI_3562	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLI_3579	PWY-6891	thiazole biosynthesis II (Bacillus)
CLI_3579	PWY-6892	thiazole biosynthesis I (E. coli)
CLI_3579	PWY-7560	methylerythritol phosphate pathway II
CLI_3582	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CLI_3584	PWY-6938	NADH repair
CLI_3585	PWY-6012	acyl carrier protein metabolism I
CLI_3585	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CLI_3593	PWY-6749	CMP-legionaminate biosynthesis I
CLI_3594	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CLI_3594	PWY-5723	Rubisco shunt
CLI_3598	PWY-7310	D-glucosaminate degradation
CLI_3603	PWY-6749	CMP-legionaminate biosynthesis I
CLI_3608	PWY-5482	pyruvate fermentation to acetate II
CLI_3608	PWY-5485	pyruvate fermentation to acetate IV
CLI_3608	PWY-5497	purine nucleobases degradation II (anaerobic)
CLI_3609	PWY-1281	sulfoacetaldehyde degradation I
CLI_3609	PWY-5482	pyruvate fermentation to acetate II
CLI_3609	PWY-5485	pyruvate fermentation to acetate IV
CLI_3609	PWY-5497	purine nucleobases degradation II (anaerobic)
CLI_3609	PWY-6637	sulfolactate degradation II
CLI_3610	PWY-5482	pyruvate fermentation to acetate II
CLI_3610	PWY-5485	pyruvate fermentation to acetate IV
CLI_3610	PWY-5497	purine nucleobases degradation II (anaerobic)
CLI_3642	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CLI_3686	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CLI_3691	PWY-7560	methylerythritol phosphate pathway II
CLI_3724	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLI_3724	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLI_3731	PWY-3961	phosphopantothenate biosynthesis II
CLI_3732	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CLI_3732	PWY-2161	folate polyglutamylation
CLI_3732	PWY-2201	folate transformations I
CLI_3732	PWY-3841	folate transformations II
CLI_3734	PWY-6599	guanine and guanosine salvage II
CLI_3734	PWY-6609	adenine and adenosine salvage III
CLI_3734	PWY-6610	adenine and adenosine salvage IV
CLI_3734	PWY-6620	guanine and guanosine salvage
CLI_3765	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CLI_3768	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLI_3768	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLI_3784	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLI_3784	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLI_3785	PWY-381	nitrate reduction II (assimilatory)
CLI_3785	PWY-5675	nitrate reduction V (assimilatory)
CLI_3785	PWY-6549	L-glutamine biosynthesis III
CLI_3785	PWY-6963	ammonia assimilation cycle I
CLI_3785	PWY-6964	ammonia assimilation cycle II
CLI_3787	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLI_3787	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLI_3807	PWY-5198	factor 420 biosynthesis
CLI_3807	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CLI_3808	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CLI_3819	PWY-4381	fatty acid biosynthesis initiation I
CLI_3819	PWY-5743	3-hydroxypropanoate cycle
CLI_3819	PWY-5744	glyoxylate assimilation
CLI_3819	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CLI_3819	PWY-6679	jadomycin biosynthesis
CLI_3819	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CLI_3820	PWY-4381	fatty acid biosynthesis initiation I
CLI_3820	PWY-5743	3-hydroxypropanoate cycle
CLI_3820	PWY-5744	glyoxylate assimilation
CLI_3820	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CLI_3820	PWY-6679	jadomycin biosynthesis
CLI_3820	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CLI_3822	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CLI_3822	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CLI_3822	PWY-5989	stearate biosynthesis II (bacteria and plants)
CLI_3822	PWY-5994	palmitate biosynthesis I (animals and fungi)
CLI_3822	PWY-6113	superpathway of mycolate biosynthesis
CLI_3822	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CLI_3822	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CLI_3822	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CLI_3822	PWYG-321	mycolate biosynthesis
CLI_3825	PWY-5367	petroselinate biosynthesis
CLI_3825	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CLI_3825	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CLI_3825	PWY-5989	stearate biosynthesis II (bacteria and plants)
CLI_3825	PWY-5994	palmitate biosynthesis I (animals and fungi)
CLI_3825	PWY-6113	superpathway of mycolate biosynthesis
CLI_3825	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CLI_3825	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CLI_3825	PWY-6951	CLI_3825
CLI_3825	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
CLI_3825	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CLI_3825	PWYG-321	mycolate biosynthesis
CLI_3826	PWY-4381	fatty acid biosynthesis initiation I
CLI_3826	PWY-6799	fatty acid biosynthesis (plant mitochondria)
CLI_3826	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CLI_3827	PWY-723	alkylnitronates degradation
CLI_3829	PWY-4381	fatty acid biosynthesis initiation I
CLI_3831	PWY-723	alkylnitronates degradation
CLI_3861	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CLI_3864	PWY-6749	CMP-legionaminate biosynthesis I
CLI_3878	PWY-6823	molybdenum cofactor biosynthesis
CLI_3878	PWY-6891	thiazole biosynthesis II (Bacillus)
CLI_3878	PWY-6892	thiazole biosynthesis I (E. coli)
CLI_3878	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
