Clopa_0017	PWY-6832	2-aminoethylphosphonate degradation II
Clopa_0020	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Clopa_0057	PWY-5372	carbon tetrachloride degradation II
Clopa_0057	PWY-6780	hydrogen production VI
Clopa_0059	PWY-5669	phosphatidylethanolamine biosynthesis I
Clopa_0134	PWY-6832	2-aminoethylphosphonate degradation II
Clopa_0158	PWY-5344	L-homocysteine biosynthesis
Clopa_0158	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Clopa_0161	PWY-5480	pyruvate fermentation to ethanol I
Clopa_0161	PWY-5485	pyruvate fermentation to acetate IV
Clopa_0161	PWY-5493	reductive monocarboxylic acid cycle
Clopa_0173	PWY-2941	L-lysine biosynthesis II
Clopa_0173	PWY-2942	L-lysine biosynthesis III
Clopa_0173	PWY-5097	L-lysine biosynthesis VI
Clopa_0173	PWY-6559	spermidine biosynthesis II
Clopa_0173	PWY-6562	norspermidine biosynthesis
Clopa_0173	PWY-7153	grixazone biosynthesis
Clopa_0189	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Clopa_0206	PWY-6823	molybdenum cofactor biosynthesis
Clopa_0206	PWY-6891	thiazole biosynthesis II (Bacillus)
Clopa_0206	PWY-6892	thiazole biosynthesis I (E. coli)
Clopa_0206	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Clopa_0212	PWY-6910	hydroxymethylpyrimidine salvage
Clopa_0212	PWY-7356	thiamin salvage IV (yeast)
Clopa_0212	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Clopa_0214	PWY-6897	thiamin salvage II
Clopa_0214	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Clopa_0214	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Clopa_0215	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Clopa_0215	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Clopa_0215	PWY-6897	thiamin salvage II
Clopa_0215	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Clopa_0215	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Clopa_0215	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Clopa_0215	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Clopa_0217	PWY-4981	L-proline biosynthesis II (from arginine)
Clopa_0217	PWY-4984	urea cycle
Clopa_0217	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Clopa_0218	PWY-6167	flavin biosynthesis II (archaea)
Clopa_0218	PWY-6168	flavin biosynthesis III (fungi)
Clopa_0219	PWY-6167	flavin biosynthesis II (archaea)
Clopa_0219	PWY-6168	flavin biosynthesis III (fungi)
Clopa_0219	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Clopa_0220	PWY-6167	flavin biosynthesis II (archaea)
Clopa_0220	PWY-6168	flavin biosynthesis III (fungi)
Clopa_0220	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Clopa_0228	PWY-7560	methylerythritol phosphate pathway II
Clopa_0264	PWY-6749	CMP-legionaminate biosynthesis I
Clopa_0267	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Clopa_0269	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Clopa_0269	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Clopa_0269	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Clopa_0287	PWY-5663	tetrahydrobiopterin biosynthesis I
Clopa_0287	PWY-5664	tetrahydrobiopterin biosynthesis II
Clopa_0287	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Clopa_0287	PWY-6703	preQ<sub>0</sub> biosynthesis
Clopa_0287	PWY-6983	tetrahydrobiopterin biosynthesis III
Clopa_0287	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Clopa_0289	PWY-6614	tetrahydrofolate biosynthesis
Clopa_0290	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Clopa_0290	PWY-6148	tetrahydromethanopterin biosynthesis
Clopa_0290	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Clopa_0290	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Clopa_0298	PWY-5316	nicotine biosynthesis
Clopa_0298	PWY-7342	superpathway of nicotine biosynthesis
Clopa_0299	PWY-5316	nicotine biosynthesis
Clopa_0299	PWY-5381	pyridine nucleotide cycling (plants)
Clopa_0299	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Clopa_0299	PWY-7342	superpathway of nicotine biosynthesis
Clopa_0325	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Clopa_0325	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Clopa_0365	PWY-7560	methylerythritol phosphate pathway II
Clopa_0369	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Clopa_0369	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Clopa_0369	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Clopa_0369	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Clopa_0371	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Clopa_0371	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Clopa_0373	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Clopa_0373	PWY-7177	UTP and CTP dephosphorylation II
Clopa_0373	PWY-7185	UTP and CTP dephosphorylation I
Clopa_0377	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Clopa_0379	PWY-7199	pyrimidine deoxyribonucleosides salvage
Clopa_0388	PWY-7183	pyrimidine nucleobases salvage I
Clopa_0409	PWY-6823	molybdenum cofactor biosynthesis
Clopa_0409	PWY-6891	thiazole biosynthesis II (Bacillus)
Clopa_0409	PWY-6892	thiazole biosynthesis I (E. coli)
Clopa_0409	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Clopa_0410	PWY-2941	L-lysine biosynthesis II
Clopa_0410	PWY-5097	L-lysine biosynthesis VI
Clopa_0411	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Clopa_0420	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Clopa_0420	PWY-6596	adenosine nucleotides degradation I
Clopa_0420	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Clopa_0429	PWY-6476	cytidylyl molybdenum cofactor biosynthesis
Clopa_0443	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Clopa_0448	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Clopa_0448	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Clopa_0448	PWY-6936	seleno-amino acid biosynthesis
Clopa_0448	PWY-702	L-methionine biosynthesis II
Clopa_0456	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Clopa_0456	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Clopa_0456	PWY-6936	seleno-amino acid biosynthesis
Clopa_0456	PWY-702	L-methionine biosynthesis II
Clopa_0457	PWY-2201	folate transformations I
Clopa_0457	PWY-3841	folate transformations II
Clopa_0486	PWY-5269	cardiolipin biosynthesis II
Clopa_0486	PWY-5668	cardiolipin biosynthesis I
Clopa_0496	PWY-7310	D-glucosaminate degradation
Clopa_0497	PWY-6123	inosine-5'-phosphate biosynthesis I
Clopa_0497	PWY-6124	inosine-5'-phosphate biosynthesis II
Clopa_0497	PWY-7234	inosine-5'-phosphate biosynthesis III
Clopa_0502	PWY-5101	L-isoleucine biosynthesis II
Clopa_0502	PWY-5103	L-isoleucine biosynthesis III
Clopa_0502	PWY-5104	L-isoleucine biosynthesis IV
Clopa_0502	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Clopa_0531	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Clopa_0531	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Clopa_0533	PWY-6936	seleno-amino acid biosynthesis
Clopa_0562	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Clopa_0562	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Clopa_0599	PWY-5480	pyruvate fermentation to ethanol I
Clopa_0599	PWY-5485	pyruvate fermentation to acetate IV
Clopa_0599	PWY-5493	reductive monocarboxylic acid cycle
Clopa_0600	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Clopa_0600	PWY-5723	Rubisco shunt
Clopa_0605	PWY-4321	L-glutamate degradation IV
Clopa_0614	PWY-4621	arsenate detoxification II (glutaredoxin)
Clopa_0618	PWY-4202	arsenate detoxification I (glutaredoxin)
Clopa_0640	PWY-1042	glycolysis IV (plant cytosol)
Clopa_0640	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Clopa_0640	PWY-5484	glycolysis II (from fructose 6-phosphate)
Clopa_0640	PWY-5723	Rubisco shunt
Clopa_0640	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Clopa_0640	PWY-6886	1-butanol autotrophic biosynthesis
Clopa_0640	PWY-6901	superpathway of glucose and xylose degradation
Clopa_0640	PWY-7003	glycerol degradation to butanol
Clopa_0640	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Clopa_0640	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Clopa_0642	PWY-5704	urea degradation II
Clopa_0656	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Clopa_0656	PWY-6855	chitin degradation I (archaea)
Clopa_0656	PWY-6906	chitin derivatives degradation
Clopa_0658	PWY-5162	2-oxopentenoate degradation
Clopa_0684	PWY-6703	preQ<sub>0</sub> biosynthesis
Clopa_0694	PWY-6527	stachyose degradation
Clopa_0702	PWY-6317	galactose degradation I (Leloir pathway)
Clopa_0702	PWY-6527	stachyose degradation
Clopa_0706	PWY-3821	galactose degradation III
Clopa_0706	PWY-6317	galactose degradation I (Leloir pathway)
Clopa_0706	PWY-6527	stachyose degradation
Clopa_0707	PWY-3821	galactose degradation III
Clopa_0707	PWY-6317	galactose degradation I (Leloir pathway)
Clopa_0707	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Clopa_0707	PWY-6527	stachyose degradation
Clopa_0707	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Clopa_0707	PWY-7344	UDP-D-galactose biosynthesis
Clopa_0712	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Clopa_0712	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Clopa_0712	PWY-7242	D-fructuronate degradation
Clopa_0712	PWY-7310	D-glucosaminate degradation
Clopa_0714	PWY-7310	D-glucosaminate degradation
Clopa_0741	PWY-5506	methanol oxidation to formaldehyde IV
Clopa_0793	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Clopa_0817	PWY-2941	L-lysine biosynthesis II
Clopa_0817	PWY-2942	L-lysine biosynthesis III
Clopa_0817	PWY-5097	L-lysine biosynthesis VI
Clopa_0830	PWY-3821	galactose degradation III
Clopa_0830	PWY-6317	galactose degradation I (Leloir pathway)
Clopa_0830	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Clopa_0830	PWY-6527	stachyose degradation
Clopa_0830	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Clopa_0830	PWY-7344	UDP-D-galactose biosynthesis
Clopa_0844	PWY-6807	xyloglucan degradation II (exoglucanase)
Clopa_0855	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Clopa_0870	PWY-6986	alginate degradation
Clopa_0872	PWY-3221	dTDP-L-rhamnose biosynthesis II
Clopa_0872	PWY-6808	dTDP-D-forosamine biosynthesis
Clopa_0872	PWY-6942	dTDP-D-desosamine biosynthesis
Clopa_0872	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Clopa_0872	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Clopa_0872	PWY-6974	dTDP-L-olivose biosynthesis
Clopa_0872	PWY-6976	dTDP-L-mycarose biosynthesis
Clopa_0872	PWY-7104	dTDP-L-megosamine biosynthesis
Clopa_0872	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Clopa_0872	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Clopa_0872	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Clopa_0872	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Clopa_0872	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Clopa_0872	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Clopa_0872	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Clopa_0872	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Clopa_0873	PWY-3221	dTDP-L-rhamnose biosynthesis II
Clopa_0873	PWY-6808	dTDP-D-forosamine biosynthesis
Clopa_0873	PWY-6942	dTDP-D-desosamine biosynthesis
Clopa_0873	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Clopa_0873	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Clopa_0873	PWY-6974	dTDP-L-olivose biosynthesis
Clopa_0873	PWY-6976	dTDP-L-mycarose biosynthesis
Clopa_0873	PWY-7104	dTDP-L-megosamine biosynthesis
Clopa_0873	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Clopa_0873	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Clopa_0873	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Clopa_0873	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Clopa_0873	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Clopa_0873	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Clopa_0873	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Clopa_0873	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Clopa_0875	PWY-3801	sucrose degradation II (sucrose synthase)
Clopa_0875	PWY-6527	stachyose degradation
Clopa_0875	PWY-6981	chitin biosynthesis
Clopa_0875	PWY-7238	sucrose biosynthesis II
Clopa_0875	PWY-7343	UDP-glucose biosynthesis
Clopa_0882	PWY-3801	sucrose degradation II (sucrose synthase)
Clopa_0882	PWY-6527	stachyose degradation
Clopa_0882	PWY-6981	chitin biosynthesis
Clopa_0882	PWY-7238	sucrose biosynthesis II
Clopa_0882	PWY-7343	UDP-glucose biosynthesis
Clopa_0885	PWY-6749	CMP-legionaminate biosynthesis I
Clopa_0918	PWY-3801	sucrose degradation II (sucrose synthase)
Clopa_0918	PWY-6527	stachyose degradation
Clopa_0918	PWY-6981	chitin biosynthesis
Clopa_0918	PWY-7238	sucrose biosynthesis II
Clopa_0918	PWY-7343	UDP-glucose biosynthesis
Clopa_0922	PWY-4261	glycerol degradation I
Clopa_0950	PWY-6891	thiazole biosynthesis II (Bacillus)
Clopa_0950	PWY-6892	thiazole biosynthesis I (E. coli)
Clopa_0950	PWY-7560	methylerythritol phosphate pathway II
Clopa_0953	PWY-5694	allantoin degradation to glyoxylate I
Clopa_0953	PWY-5705	allantoin degradation to glyoxylate III
Clopa_0961	PWY-5367	petroselinate biosynthesis
Clopa_0961	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Clopa_0961	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Clopa_0961	PWY-5989	stearate biosynthesis II (bacteria and plants)
Clopa_0961	PWY-5994	palmitate biosynthesis I (animals and fungi)
Clopa_0961	PWY-6113	superpathway of mycolate biosynthesis
Clopa_0961	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Clopa_0961	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Clopa_0961	PWY-6951	Clopa_0961
Clopa_0961	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Clopa_0961	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Clopa_0961	PWYG-321	mycolate biosynthesis
Clopa_0970	PWY-5269	cardiolipin biosynthesis II
Clopa_0970	PWY-5668	cardiolipin biosynthesis I
Clopa_0987	PWY-1881	formate oxidation to CO<sub>2</sub>
Clopa_0987	PWY-5497	purine nucleobases degradation II (anaerobic)
Clopa_0987	PWY-6696	oxalate degradation III
Clopa_0988	PWY-6823	molybdenum cofactor biosynthesis
Clopa_0992	PWY-5964	guanylyl molybdenum cofactor biosynthesis
Clopa_0993	PWY-6823	molybdenum cofactor biosynthesis
Clopa_1010	PWY-6823	molybdenum cofactor biosynthesis
Clopa_1029	PWY-7310	D-glucosaminate degradation
Clopa_1030	PWY-621	sucrose degradation III (sucrose invertase)
Clopa_1042	PWY-6854	ethylene biosynthesis III (microbes)
Clopa_1044	PWY-5497	purine nucleobases degradation II (anaerobic)
Clopa_1044	PWY-6606	guanosine nucleotides degradation II
Clopa_1044	PWY-6608	guanosine nucleotides degradation III
Clopa_1044	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Clopa_1076	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Clopa_1076	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Clopa_1106	PWY-7310	D-glucosaminate degradation
Clopa_1125	PWY-6654	phosphopantothenate biosynthesis III
Clopa_1126	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Clopa_1143	PWY-7310	D-glucosaminate degradation
Clopa_1144	PWY-7310	D-glucosaminate degradation
Clopa_1159	PWY-5162	2-oxopentenoate degradation
Clopa_1180	PWY-2941	L-lysine biosynthesis II
Clopa_1180	PWY-2942	L-lysine biosynthesis III
Clopa_1180	PWY-5097	L-lysine biosynthesis VI
Clopa_1180	PWY-6559	spermidine biosynthesis II
Clopa_1180	PWY-6562	norspermidine biosynthesis
Clopa_1180	PWY-7153	grixazone biosynthesis
Clopa_1181	PWY-2941	L-lysine biosynthesis II
Clopa_1181	PWY-2942	L-lysine biosynthesis III
Clopa_1181	PWY-5097	L-lysine biosynthesis VI
Clopa_1199	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Clopa_1199	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Clopa_1203	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Clopa_1209	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Clopa_1209	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Clopa_1209	PWY-6268	adenosylcobalamin salvage from cobalamin
Clopa_1209	PWY-6269	adenosylcobalamin salvage from cobinamide II
Clopa_1213	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Clopa_1216	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Clopa_1218	PWY-5194	siroheme biosynthesis
Clopa_1218	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Clopa_1219	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Clopa_1225	PWY-5443	aminopropanol phosphate biosynthesis I
Clopa_1250	PWY-6936	seleno-amino acid biosynthesis
Clopa_1251	PWY-1042	glycolysis IV (plant cytosol)
Clopa_1251	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Clopa_1251	PWY-5484	glycolysis II (from fructose 6-phosphate)
Clopa_1251	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Clopa_1251	PWY-7385	1,3-propanediol biosynthesis (engineered)
Clopa_1257	PWY-5669	phosphatidylethanolamine biosynthesis I
Clopa_1266	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Clopa_1266	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Clopa_1266	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Clopa_1266	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Clopa_1274	PWY-6936	seleno-amino acid biosynthesis
Clopa_1274	PWY-7274	D-cycloserine biosynthesis
Clopa_1298	PWY-5101	L-isoleucine biosynthesis II
Clopa_1298	PWY-5103	L-isoleucine biosynthesis III
Clopa_1298	PWY-5104	L-isoleucine biosynthesis IV
Clopa_1298	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Clopa_1298	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Clopa_1298	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Clopa_1298	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Clopa_1299	PWY-5101	L-isoleucine biosynthesis II
Clopa_1299	PWY-5103	L-isoleucine biosynthesis III
Clopa_1299	PWY-5104	L-isoleucine biosynthesis IV
Clopa_1299	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Clopa_1299	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Clopa_1299	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Clopa_1299	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Clopa_1307	PWY-6012	acyl carrier protein metabolism I
Clopa_1307	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Clopa_1319	PWY-1622	formaldehyde assimilation I (serine pathway)
Clopa_1319	PWY-5484	glycolysis II (from fructose 6-phosphate)
Clopa_1337	PWY-1042	glycolysis IV (plant cytosol)
Clopa_1337	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Clopa_1337	PWY-5484	glycolysis II (from fructose 6-phosphate)
Clopa_1337	PWY-7385	1,3-propanediol biosynthesis (engineered)
Clopa_1340	PWY-7310	D-glucosaminate degradation
Clopa_1347	PWY-3162	L-tryptophan degradation V (side chain pathway)
Clopa_1347	PWY-5057	L-valine degradation II
Clopa_1347	PWY-5076	L-leucine degradation III
Clopa_1347	PWY-5078	L-isoleucine degradation II
Clopa_1347	PWY-5079	L-phenylalanine degradation III
Clopa_1347	PWY-5082	L-methionine degradation III
Clopa_1347	PWY-5162	2-oxopentenoate degradation
Clopa_1347	PWY-5436	L-threonine degradation IV
Clopa_1347	PWY-5480	pyruvate fermentation to ethanol I
Clopa_1347	PWY-5486	pyruvate fermentation to ethanol II
Clopa_1347	PWY-5751	phenylethanol biosynthesis
Clopa_1347	PWY-6028	acetoin degradation
Clopa_1347	PWY-6313	serotonin degradation
Clopa_1347	PWY-6333	acetaldehyde biosynthesis I
Clopa_1347	PWY-6342	noradrenaline and adrenaline degradation
Clopa_1347	PWY-6587	pyruvate fermentation to ethanol III
Clopa_1347	PWY-6802	salidroside biosynthesis
Clopa_1347	PWY-6871	3-methylbutanol biosynthesis
Clopa_1347	PWY-7013	L-1,2-propanediol degradation
Clopa_1347	PWY-7085	triethylamine degradation
Clopa_1347	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Clopa_1347	PWY-7118	chitin degradation to ethanol
Clopa_1347	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Clopa_1347	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Clopa_1347	PWY-7557	dehydrodiconiferyl alcohol degradation
Clopa_1348	PWY-6749	CMP-legionaminate biosynthesis I
Clopa_1358	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Clopa_1394	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Clopa_1394	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Clopa_1396	PWY-7310	D-glucosaminate degradation
Clopa_1397	PWY-7310	D-glucosaminate degradation
Clopa_1400	PWY-3162	L-tryptophan degradation V (side chain pathway)
Clopa_1400	PWY-5057	L-valine degradation II
Clopa_1400	PWY-5076	L-leucine degradation III
Clopa_1400	PWY-5078	L-isoleucine degradation II
Clopa_1400	PWY-5079	L-phenylalanine degradation III
Clopa_1400	PWY-5082	L-methionine degradation III
Clopa_1400	PWY-5162	2-oxopentenoate degradation
Clopa_1400	PWY-5436	L-threonine degradation IV
Clopa_1400	PWY-5480	pyruvate fermentation to ethanol I
Clopa_1400	PWY-5486	pyruvate fermentation to ethanol II
Clopa_1400	PWY-5751	phenylethanol biosynthesis
Clopa_1400	PWY-6028	acetoin degradation
Clopa_1400	PWY-6313	serotonin degradation
Clopa_1400	PWY-6333	acetaldehyde biosynthesis I
Clopa_1400	PWY-6342	noradrenaline and adrenaline degradation
Clopa_1400	PWY-6587	pyruvate fermentation to ethanol III
Clopa_1400	PWY-6802	salidroside biosynthesis
Clopa_1400	PWY-6871	3-methylbutanol biosynthesis
Clopa_1400	PWY-7013	L-1,2-propanediol degradation
Clopa_1400	PWY-7085	triethylamine degradation
Clopa_1400	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Clopa_1400	PWY-7118	chitin degradation to ethanol
Clopa_1400	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Clopa_1400	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Clopa_1400	PWY-7557	dehydrodiconiferyl alcohol degradation
Clopa_1401	PWY-3801	sucrose degradation II (sucrose synthase)
Clopa_1401	PWY-5054	sorbitol biosynthesis I
Clopa_1401	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Clopa_1401	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Clopa_1401	PWY-5659	GDP-mannose biosynthesis
Clopa_1401	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Clopa_1401	PWY-621	sucrose degradation III (sucrose invertase)
Clopa_1401	PWY-622	starch biosynthesis
Clopa_1401	PWY-6531	mannitol cycle
Clopa_1401	PWY-6981	chitin biosynthesis
Clopa_1401	PWY-7238	sucrose biosynthesis II
Clopa_1401	PWY-7347	sucrose biosynthesis III
Clopa_1401	PWY-7385	1,3-propanediol biosynthesis (engineered)
Clopa_1405	PWY-7310	D-glucosaminate degradation
Clopa_1423	PWY-1361	benzoyl-CoA degradation I (aerobic)
Clopa_1423	PWY-5109	2-methylbutanoate biosynthesis
Clopa_1423	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Clopa_1423	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Clopa_1423	PWY-5177	glutaryl-CoA degradation
Clopa_1423	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Clopa_1423	PWY-6435	4-hydroxybenzoate biosynthesis V
Clopa_1423	PWY-6583	pyruvate fermentation to butanol I
Clopa_1423	PWY-6863	pyruvate fermentation to hexanol
Clopa_1423	PWY-6883	pyruvate fermentation to butanol II
Clopa_1423	PWY-6944	androstenedione degradation
Clopa_1423	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Clopa_1423	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Clopa_1423	PWY-7007	methyl ketone biosynthesis
Clopa_1423	PWY-7046	4-coumarate degradation (anaerobic)
Clopa_1423	PWY-7094	fatty acid salvage
Clopa_1423	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Clopa_1423	PWY-735	jasmonic acid biosynthesis
Clopa_1423	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Clopa_1425	PWY-101	photosynthesis light reactions
Clopa_1425	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Clopa_1431	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Clopa_1431	PWY-6596	adenosine nucleotides degradation I
Clopa_1431	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Clopa_1432	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Clopa_1441	PWY-842	starch degradation I
Clopa_1450	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Clopa_1456	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Clopa_1484	PWY-5372	carbon tetrachloride degradation II
Clopa_1484	PWY-6780	hydrogen production VI
Clopa_1508	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Clopa_1510	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Clopa_1510	PWY-6578	8-amino-7-oxononanoate biosynthesis III
Clopa_1510	PWY-7147	8-amino-7-oxononanoate biosynthesis II
Clopa_1516	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Clopa_1525	PWY-5367	petroselinate biosynthesis
Clopa_1525	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Clopa_1525	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Clopa_1525	PWY-5989	stearate biosynthesis II (bacteria and plants)
Clopa_1525	PWY-5994	palmitate biosynthesis I (animals and fungi)
Clopa_1525	PWY-6113	superpathway of mycolate biosynthesis
Clopa_1525	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Clopa_1525	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Clopa_1525	PWY-6951	Clopa_1525
Clopa_1525	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Clopa_1525	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Clopa_1525	PWYG-321	mycolate biosynthesis
Clopa_1534	PWY-5958	acridone alkaloid biosynthesis
Clopa_1534	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Clopa_1534	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Clopa_1535	PWY-3461	L-tyrosine biosynthesis II
Clopa_1535	PWY-3462	L-phenylalanine biosynthesis II
Clopa_1535	PWY-6120	L-tyrosine biosynthesis III
Clopa_1535	PWY-6627	salinosporamide A biosynthesis
Clopa_1610	PWY-7242	D-fructuronate degradation
Clopa_1617	PWY-5344	L-homocysteine biosynthesis
Clopa_1617	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Clopa_1623	PWY-5686	UMP biosynthesis
Clopa_1625	PWY-5686	UMP biosynthesis
Clopa_1626	PWY-5686	UMP biosynthesis
Clopa_1629	PWY-5686	UMP biosynthesis
Clopa_1631	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Clopa_1631	PWY-5686	UMP biosynthesis
Clopa_1631	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Clopa_1632	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Clopa_1632	PWY-5686	UMP biosynthesis
Clopa_1632	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Clopa_1665	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Clopa_1665	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Clopa_1665	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Clopa_1665	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Clopa_1668	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Clopa_1668	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Clopa_1672	PWY-31	canavanine degradation
Clopa_1672	PWY-4984	urea cycle
Clopa_1672	PWY-6305	putrescine biosynthesis IV
Clopa_1672	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Clopa_1710	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Clopa_1710	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Clopa_1712	PWY-6823	molybdenum cofactor biosynthesis
Clopa_1748	PWY-6871	3-methylbutanol biosynthesis
Clopa_1758	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Clopa_1767	PWY-3162	L-tryptophan degradation V (side chain pathway)
Clopa_1767	PWY-5057	L-valine degradation II
Clopa_1767	PWY-5076	L-leucine degradation III
Clopa_1767	PWY-5078	L-isoleucine degradation II
Clopa_1767	PWY-5079	L-phenylalanine degradation III
Clopa_1767	PWY-5082	L-methionine degradation III
Clopa_1767	PWY-5162	2-oxopentenoate degradation
Clopa_1767	PWY-5436	L-threonine degradation IV
Clopa_1767	PWY-5480	pyruvate fermentation to ethanol I
Clopa_1767	PWY-5486	pyruvate fermentation to ethanol II
Clopa_1767	PWY-5751	phenylethanol biosynthesis
Clopa_1767	PWY-6028	acetoin degradation
Clopa_1767	PWY-6313	serotonin degradation
Clopa_1767	PWY-6333	acetaldehyde biosynthesis I
Clopa_1767	PWY-6342	noradrenaline and adrenaline degradation
Clopa_1767	PWY-6587	pyruvate fermentation to ethanol III
Clopa_1767	PWY-6802	salidroside biosynthesis
Clopa_1767	PWY-6871	3-methylbutanol biosynthesis
Clopa_1767	PWY-7013	L-1,2-propanediol degradation
Clopa_1767	PWY-7085	triethylamine degradation
Clopa_1767	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Clopa_1767	PWY-7118	chitin degradation to ethanol
Clopa_1767	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Clopa_1767	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Clopa_1767	PWY-7557	dehydrodiconiferyl alcohol degradation
Clopa_1770	PWY-5451	acetone degradation I (to methylglyoxal)
Clopa_1770	PWY-6588	pyruvate fermentation to acetone
Clopa_1770	PWY-6876	isopropanol biosynthesis
Clopa_1770	PWY-7466	acetone degradation III (to propane-1,2-diol)
Clopa_1792	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Clopa_1792	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Clopa_1831	PWY-5484	glycolysis II (from fructose 6-phosphate)
Clopa_1939	PWY-6825	phosphatidylcholine biosynthesis V
Clopa_1969	PWY-5839	menaquinol-7 biosynthesis
Clopa_1969	PWY-5844	menaquinol-9 biosynthesis
Clopa_1969	PWY-5849	menaquinol-6 biosynthesis
Clopa_1969	PWY-5890	menaquinol-10 biosynthesis
Clopa_1969	PWY-5891	menaquinol-11 biosynthesis
Clopa_1969	PWY-5892	menaquinol-12 biosynthesis
Clopa_1969	PWY-5895	menaquinol-13 biosynthesis
Clopa_1974	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Clopa_1974	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Clopa_1974	PWY-5901	2,3-dihydroxybenzoate biosynthesis
Clopa_1974	PWY-6406	salicylate biosynthesis I
Clopa_1975	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Clopa_1975	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Clopa_1998	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Clopa_1998	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Clopa_1999	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Clopa_1999	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Clopa_2000	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Clopa_2000	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Clopa_2001	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Clopa_2001	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Clopa_2021	PWY-2941	L-lysine biosynthesis II
Clopa_2021	PWY-2942	L-lysine biosynthesis III
Clopa_2021	PWY-5097	L-lysine biosynthesis VI
Clopa_2034	PWY-5839	menaquinol-7 biosynthesis
Clopa_2034	PWY-5844	menaquinol-9 biosynthesis
Clopa_2034	PWY-5849	menaquinol-6 biosynthesis
Clopa_2034	PWY-5890	menaquinol-10 biosynthesis
Clopa_2034	PWY-5891	menaquinol-11 biosynthesis
Clopa_2034	PWY-5892	menaquinol-12 biosynthesis
Clopa_2034	PWY-5895	menaquinol-13 biosynthesis
Clopa_2036	PWY-2201	folate transformations I
Clopa_2036	PWY-3841	folate transformations II
Clopa_2051	PWY-6123	inosine-5'-phosphate biosynthesis I
Clopa_2051	PWY-7234	inosine-5'-phosphate biosynthesis III
Clopa_2052	PWY-6123	inosine-5'-phosphate biosynthesis I
Clopa_2052	PWY-6124	inosine-5'-phosphate biosynthesis II
Clopa_2052	PWY-7234	inosine-5'-phosphate biosynthesis III
Clopa_2053	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Clopa_2053	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Clopa_2053	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Clopa_2053	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Clopa_2054	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Clopa_2054	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Clopa_2054	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Clopa_2055	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Clopa_2055	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Clopa_2056	PWY-6123	inosine-5'-phosphate biosynthesis I
Clopa_2056	PWY-6124	inosine-5'-phosphate biosynthesis II
Clopa_2056	PWY-7234	inosine-5'-phosphate biosynthesis III
Clopa_2057	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Clopa_2057	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Clopa_2057	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Clopa_2086	PWY-7310	D-glucosaminate degradation
Clopa_2110	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Clopa_2110	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Clopa_2119	PWY-6823	molybdenum cofactor biosynthesis
Clopa_2128	PWY-5372	carbon tetrachloride degradation II
Clopa_2128	PWY-6780	hydrogen production VI
Clopa_2147	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Clopa_2147	PWY-6153	autoinducer AI-2 biosynthesis I
Clopa_2147	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
Clopa_2174	PWY-5381	pyridine nucleotide cycling (plants)
Clopa_2174	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Clopa_2178	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Clopa_2178	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Clopa_2206	PWY-7039	phosphatidate metabolism, as a signaling molecule
Clopa_2207	PWY-6556	pyrimidine ribonucleosides salvage II
Clopa_2207	PWY-7181	pyrimidine deoxyribonucleosides degradation
Clopa_2207	PWY-7193	pyrimidine ribonucleosides salvage I
Clopa_2207	PWY-7199	pyrimidine deoxyribonucleosides salvage
Clopa_2212	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Clopa_2212	PWY-6549	L-glutamine biosynthesis III
Clopa_2212	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Clopa_2212	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Clopa_2219	PWY-5663	tetrahydrobiopterin biosynthesis I
Clopa_2219	PWY-5664	tetrahydrobiopterin biosynthesis II
Clopa_2219	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Clopa_2219	PWY-6703	preQ<sub>0</sub> biosynthesis
Clopa_2219	PWY-6983	tetrahydrobiopterin biosynthesis III
Clopa_2219	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Clopa_2225	PWY-5101	L-isoleucine biosynthesis II
Clopa_2225	PWY-5103	L-isoleucine biosynthesis III
Clopa_2225	PWY-5104	L-isoleucine biosynthesis IV
Clopa_2225	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Clopa_2225	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Clopa_2225	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Clopa_2225	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Clopa_2226	PWY-5101	L-isoleucine biosynthesis II
Clopa_2226	PWY-5103	L-isoleucine biosynthesis III
Clopa_2226	PWY-5104	L-isoleucine biosynthesis IV
Clopa_2226	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Clopa_2229	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Clopa_2322	PWY-6700	queuosine biosynthesis
Clopa_2323	PWY-6700	queuosine biosynthesis
Clopa_2331	PWY-6605	adenine and adenosine salvage II
Clopa_2331	PWY-6610	adenine and adenosine salvage IV
Clopa_2339	PWY-1622	formaldehyde assimilation I (serine pathway)
Clopa_2339	PWY-181	photorespiration
Clopa_2339	PWY-2161	folate polyglutamylation
Clopa_2339	PWY-2201	folate transformations I
Clopa_2339	PWY-3661	glycine betaine degradation I
Clopa_2339	PWY-3661-1	glycine betaine degradation II (mammalian)
Clopa_2339	PWY-3841	folate transformations II
Clopa_2339	PWY-5497	purine nucleobases degradation II (anaerobic)
Clopa_2351	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Clopa_2354	PWY-2201	folate transformations I
Clopa_2354	PWY-3841	folate transformations II
Clopa_2356	PWY-3841	folate transformations II
Clopa_2356	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Clopa_2356	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Clopa_2356	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Clopa_2356	PWY-7199	pyrimidine deoxyribonucleosides salvage
Clopa_2356	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Clopa_2357	PWY-3841	folate transformations II
Clopa_2357	PWY-6614	tetrahydrofolate biosynthesis
Clopa_2380	PWY-622	starch biosynthesis
Clopa_2382	PWY-622	starch biosynthesis
Clopa_2393	PWY-5392	reductive TCA cycle II
Clopa_2393	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Clopa_2393	PWY-5690	TCA cycle II (plants and fungi)
Clopa_2393	PWY-5913	TCA cycle VI (obligate autotrophs)
Clopa_2393	PWY-6728	methylaspartate cycle
Clopa_2393	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Clopa_2393	PWY-7254	TCA cycle VII (acetate-producers)
Clopa_2393	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Clopa_2395	PWY-5941	glycogen degradation II (eukaryotic)
Clopa_2395	PWY-622	starch biosynthesis
Clopa_2395	PWY-6731	starch degradation III
Clopa_2395	PWY-6737	starch degradation V
Clopa_2395	PWY-7238	sucrose biosynthesis II
Clopa_2403	PWY-6823	molybdenum cofactor biosynthesis
Clopa_2403	PWY-6891	thiazole biosynthesis II (Bacillus)
Clopa_2403	PWY-6892	thiazole biosynthesis I (E. coli)
Clopa_2403	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Clopa_2440	PWY-5667	CDP-diacylglycerol biosynthesis I
Clopa_2440	PWY-5981	CDP-diacylglycerol biosynthesis III
Clopa_2445	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Clopa_2457	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Clopa_2457	PWY-5723	Rubisco shunt
Clopa_2458	PWY-6898	thiamin salvage III
Clopa_2458	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Clopa_2458	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Clopa_2469	PWY-1281	sulfoacetaldehyde degradation I
Clopa_2469	PWY-5482	pyruvate fermentation to acetate II
Clopa_2469	PWY-5485	pyruvate fermentation to acetate IV
Clopa_2469	PWY-5497	purine nucleobases degradation II (anaerobic)
Clopa_2469	PWY-6637	sulfolactate degradation II
Clopa_2470	PWY-5482	pyruvate fermentation to acetate II
Clopa_2470	PWY-5485	pyruvate fermentation to acetate IV
Clopa_2470	PWY-5497	purine nucleobases degradation II (anaerobic)
Clopa_2484	PWY-6829	tRNA methylation (yeast)
Clopa_2484	PWY-7285	methylwyosine biosynthesis
Clopa_2484	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Clopa_2530	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Clopa_2530	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Clopa_2584	PWY-7560	methylerythritol phosphate pathway II
Clopa_2586	PWY-7560	methylerythritol phosphate pathway II
Clopa_2596	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Clopa_2596	PWY-6167	flavin biosynthesis II (archaea)
Clopa_2596	PWY-6168	flavin biosynthesis III (fungi)
Clopa_2603	PWY-5269	cardiolipin biosynthesis II
Clopa_2603	PWY-5668	cardiolipin biosynthesis I
Clopa_2611	PWY-6123	inosine-5'-phosphate biosynthesis I
Clopa_2611	PWY-6124	inosine-5'-phosphate biosynthesis II
Clopa_2611	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Clopa_2611	PWY-7234	inosine-5'-phosphate biosynthesis III
Clopa_2661	PWY-2781	<i>cis</i>-zeatin biosynthesis
Clopa_2668	PWY-7560	methylerythritol phosphate pathway II
Clopa_2669	PWY-7205	CMP phosphorylation
Clopa_2691	PWY-6123	inosine-5'-phosphate biosynthesis I
Clopa_2691	PWY-6124	inosine-5'-phosphate biosynthesis II
Clopa_2691	PWY-7234	inosine-5'-phosphate biosynthesis III
Clopa_2711	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Clopa_2711	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Clopa_2716	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Clopa_2716	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Clopa_2717	PWY-7181	pyrimidine deoxyribonucleosides degradation
Clopa_2718	PWY-4202	arsenate detoxification I (glutaredoxin)
Clopa_2718	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Clopa_2718	PWY-6608	guanosine nucleotides degradation III
Clopa_2718	PWY-6609	adenine and adenosine salvage III
Clopa_2718	PWY-6611	adenine and adenosine salvage V
Clopa_2718	PWY-6620	guanine and guanosine salvage
Clopa_2718	PWY-6627	salinosporamide A biosynthesis
Clopa_2718	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Clopa_2718	PWY-7179	purine deoxyribonucleosides degradation I
Clopa_2718	PWY-7179-1	purine deoxyribonucleosides degradation
Clopa_2719	PWY-4202	arsenate detoxification I (glutaredoxin)
Clopa_2719	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Clopa_2719	PWY-6608	guanosine nucleotides degradation III
Clopa_2719	PWY-6609	adenine and adenosine salvage III
Clopa_2719	PWY-6611	adenine and adenosine salvage V
Clopa_2719	PWY-6620	guanine and guanosine salvage
Clopa_2719	PWY-6627	salinosporamide A biosynthesis
Clopa_2719	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Clopa_2719	PWY-7179	purine deoxyribonucleosides degradation I
Clopa_2719	PWY-7179-1	purine deoxyribonucleosides degradation
Clopa_2720	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Clopa_2825	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Clopa_2825	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Clopa_2825	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Clopa_2827	PWY-6891	thiazole biosynthesis II (Bacillus)
Clopa_2827	PWY-6892	thiazole biosynthesis I (E. coli)
Clopa_2827	PWY-7560	methylerythritol phosphate pathway II
Clopa_2832	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Clopa_2832	PWY-2201	folate transformations I
Clopa_2832	PWY-3841	folate transformations II
Clopa_2832	PWY-5030	L-histidine degradation III
Clopa_2832	PWY-5497	purine nucleobases degradation II (anaerobic)
Clopa_2832	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Clopa_2876	PWY-5958	acridone alkaloid biosynthesis
Clopa_2876	PWY-6543	4-aminobenzoate biosynthesis
Clopa_2876	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Clopa_2876	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Clopa_2876	PWY-6722	candicidin biosynthesis
Clopa_2877	PWY-5958	acridone alkaloid biosynthesis
Clopa_2877	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Clopa_2877	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Clopa_2880	PWY-7183	pyrimidine nucleobases salvage I
Clopa_2884	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Clopa_2884	PWY-6153	autoinducer AI-2 biosynthesis I
Clopa_2884	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
Clopa_2888	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Clopa_2894	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Clopa_2894	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Clopa_2894	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Clopa_2895	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Clopa_2895	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Clopa_2913	PWY-1281	sulfoacetaldehyde degradation I
Clopa_2913	PWY-5482	pyruvate fermentation to acetate II
Clopa_2913	PWY-5485	pyruvate fermentation to acetate IV
Clopa_2913	PWY-5497	purine nucleobases degradation II (anaerobic)
Clopa_2913	PWY-6637	sulfolactate degradation II
Clopa_2934	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Clopa_2980	PWY-5481	pyruvate fermentation to lactate
Clopa_2980	PWY-6901	superpathway of glucose and xylose degradation
Clopa_2988	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Clopa_2988	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Clopa_2988	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Clopa_2988	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Clopa_2990	PWY-5198	factor 420 biosynthesis
Clopa_2997	PWY-7310	D-glucosaminate degradation
Clopa_2998	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
Clopa_2999	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
Clopa_3023	PWY-5030	L-histidine degradation III
Clopa_3023	PWY-5497	purine nucleobases degradation II (anaerobic)
Clopa_3048	PWY-3221	dTDP-L-rhamnose biosynthesis II
Clopa_3048	PWY-6808	dTDP-D-forosamine biosynthesis
Clopa_3048	PWY-6942	dTDP-D-desosamine biosynthesis
Clopa_3048	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Clopa_3048	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Clopa_3048	PWY-6974	dTDP-L-olivose biosynthesis
Clopa_3048	PWY-6976	dTDP-L-mycarose biosynthesis
Clopa_3048	PWY-7104	dTDP-L-megosamine biosynthesis
Clopa_3048	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Clopa_3048	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Clopa_3048	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Clopa_3048	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Clopa_3048	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Clopa_3048	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Clopa_3048	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Clopa_3048	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Clopa_3049	PWY-3221	dTDP-L-rhamnose biosynthesis II
Clopa_3049	PWY-6808	dTDP-D-forosamine biosynthesis
Clopa_3049	PWY-6942	dTDP-D-desosamine biosynthesis
Clopa_3049	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Clopa_3049	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Clopa_3049	PWY-6974	dTDP-L-olivose biosynthesis
Clopa_3049	PWY-6976	dTDP-L-mycarose biosynthesis
Clopa_3049	PWY-7104	dTDP-L-megosamine biosynthesis
Clopa_3049	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Clopa_3049	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Clopa_3049	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Clopa_3049	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Clopa_3049	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Clopa_3049	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Clopa_3049	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Clopa_3049	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Clopa_3051	PWY-3801	sucrose degradation II (sucrose synthase)
Clopa_3051	PWY-6527	stachyose degradation
Clopa_3051	PWY-6981	chitin biosynthesis
Clopa_3051	PWY-7238	sucrose biosynthesis II
Clopa_3051	PWY-7343	UDP-glucose biosynthesis
Clopa_3053	PWY-6749	CMP-legionaminate biosynthesis I
Clopa_3060	PWY-6823	molybdenum cofactor biosynthesis
Clopa_3060	PWY-6891	thiazole biosynthesis II (Bacillus)
Clopa_3060	PWY-6892	thiazole biosynthesis I (E. coli)
Clopa_3060	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Clopa_3073	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
Clopa_3076	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
Clopa_3076	PWY-5940	streptomycin biosynthesis
Clopa_3106	PWY-2941	L-lysine biosynthesis II
Clopa_3106	PWY-2942	L-lysine biosynthesis III
Clopa_3106	PWY-5097	L-lysine biosynthesis VI
Clopa_3107	PWY-2941	L-lysine biosynthesis II
Clopa_3107	PWY-2942	L-lysine biosynthesis III
Clopa_3107	PWY-5097	L-lysine biosynthesis VI
Clopa_3114	PWY-2941	L-lysine biosynthesis II
Clopa_3119	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Clopa_3119	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Clopa_3119	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Clopa_3119	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Clopa_3119	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Clopa_3119	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Clopa_3119	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Clopa_3119	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Clopa_3121	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Clopa_3121	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Clopa_3122	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Clopa_3122	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Clopa_3123	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Clopa_3125	PWY-2161	folate polyglutamylation
Clopa_3136	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Clopa_3136	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Clopa_3174	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
Clopa_3174	PWY-622	starch biosynthesis
Clopa_3187	PWY-6823	molybdenum cofactor biosynthesis
Clopa_3187	PWY-6891	thiazole biosynthesis II (Bacillus)
Clopa_3187	PWY-6892	thiazole biosynthesis I (E. coli)
Clopa_3187	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Clopa_3188	PWY-6936	seleno-amino acid biosynthesis
Clopa_3199	PWY-6854	ethylene biosynthesis III (microbes)
Clopa_3200	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Clopa_3200	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Clopa_3200	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Clopa_3200	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Clopa_3227	PWY-5381	pyridine nucleotide cycling (plants)
Clopa_3227	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Clopa_3232	PWY-5372	carbon tetrachloride degradation II
Clopa_3232	PWY-6780	hydrogen production VI
Clopa_3234	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Clopa_3234	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Clopa_3234	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Clopa_3234	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Clopa_3234	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Clopa_3234	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Clopa_3234	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Clopa_3234	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Clopa_3241	PWY-6854	ethylene biosynthesis III (microbes)
Clopa_3253	PWY-6703	preQ<sub>0</sub> biosynthesis
Clopa_3255	PWY-1042	glycolysis IV (plant cytosol)
Clopa_3255	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Clopa_3255	PWY-5484	glycolysis II (from fructose 6-phosphate)
Clopa_3255	PWY-5723	Rubisco shunt
Clopa_3255	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Clopa_3255	PWY-6886	1-butanol autotrophic biosynthesis
Clopa_3255	PWY-6901	superpathway of glucose and xylose degradation
Clopa_3255	PWY-7003	glycerol degradation to butanol
Clopa_3255	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Clopa_3255	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Clopa_3264	PWY-1042	glycolysis IV (plant cytosol)
Clopa_3264	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Clopa_3264	PWY-5484	glycolysis II (from fructose 6-phosphate)
Clopa_3264	PWY-5723	Rubisco shunt
Clopa_3264	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Clopa_3264	PWY-6886	1-butanol autotrophic biosynthesis
Clopa_3264	PWY-6901	superpathway of glucose and xylose degradation
Clopa_3264	PWY-7003	glycerol degradation to butanol
Clopa_3264	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Clopa_3264	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Clopa_3279	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Clopa_3322	PWY-5381	pyridine nucleotide cycling (plants)
Clopa_3335	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Clopa_3335	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Clopa_3335	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Clopa_3335	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Clopa_3335	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Clopa_3335	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Clopa_3335	PWY-7205	CMP phosphorylation
Clopa_3335	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Clopa_3335	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Clopa_3335	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Clopa_3335	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Clopa_3335	PWY-7224	purine deoxyribonucleosides salvage
Clopa_3335	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Clopa_3335	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Clopa_3348	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Clopa_3349	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Clopa_3349	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Clopa_3420	PWY-5484	glycolysis II (from fructose 6-phosphate)
Clopa_3425	PWY-4983	L-citrulline-nitric oxide cycle
Clopa_3425	PWY-4984	urea cycle
Clopa_3425	PWY-5	canavanine biosynthesis
Clopa_3425	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Clopa_3425	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Clopa_3426	PWY-4983	L-citrulline-nitric oxide cycle
Clopa_3426	PWY-4984	urea cycle
Clopa_3426	PWY-5	canavanine biosynthesis
Clopa_3426	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Clopa_3426	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Clopa_3430	PWY-5667	CDP-diacylglycerol biosynthesis I
Clopa_3430	PWY-5981	CDP-diacylglycerol biosynthesis III
Clopa_3430	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
Clopa_3430	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Clopa_3443	PWY-3861	mannitol degradation II
Clopa_3443	PWY-3881	mannitol biosynthesis
Clopa_3443	PWY-5659	GDP-mannose biosynthesis
Clopa_3443	PWY-7456	mannan degradation
Clopa_3443	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Clopa_3456	PWY-6871	3-methylbutanol biosynthesis
Clopa_3460	PWY-6823	molybdenum cofactor biosynthesis
Clopa_3493	PWY-5958	acridone alkaloid biosynthesis
Clopa_3493	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Clopa_3493	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Clopa_3494	PWY-5958	acridone alkaloid biosynthesis
Clopa_3494	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Clopa_3494	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Clopa_3499	PWY-702	L-methionine biosynthesis II
Clopa_3515	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Clopa_3515	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Clopa_3519	PWY-5663	tetrahydrobiopterin biosynthesis I
Clopa_3519	PWY-5664	tetrahydrobiopterin biosynthesis II
Clopa_3519	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Clopa_3519	PWY-6703	preQ<sub>0</sub> biosynthesis
Clopa_3519	PWY-6983	tetrahydrobiopterin biosynthesis III
Clopa_3519	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Clopa_3538	PWY-7399	methylphosphonate degradation II
Clopa_3540	PWY-7399	methylphosphonate degradation II
Clopa_3543	PWY-7399	methylphosphonate degradation II
Clopa_3573	PWY-1042	glycolysis IV (plant cytosol)
Clopa_3573	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Clopa_3573	PWY-5484	glycolysis II (from fructose 6-phosphate)
Clopa_3573	PWY-5723	Rubisco shunt
Clopa_3573	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Clopa_3573	PWY-6886	1-butanol autotrophic biosynthesis
Clopa_3573	PWY-6901	superpathway of glucose and xylose degradation
Clopa_3573	PWY-7003	glycerol degradation to butanol
Clopa_3573	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Clopa_3573	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Clopa_3574	PWY-1042	glycolysis IV (plant cytosol)
Clopa_3574	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Clopa_3574	PWY-5484	glycolysis II (from fructose 6-phosphate)
Clopa_3574	PWY-7385	1,3-propanediol biosynthesis (engineered)
Clopa_3577	PWY-1281	sulfoacetaldehyde degradation I
Clopa_3577	PWY-5482	pyruvate fermentation to acetate II
Clopa_3577	PWY-5485	pyruvate fermentation to acetate IV
Clopa_3577	PWY-5497	purine nucleobases degradation II (anaerobic)
Clopa_3577	PWY-6637	sulfolactate degradation II
Clopa_3581	PWY-6654	phosphopantothenate biosynthesis III
Clopa_3582	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Clopa_3582	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Clopa_3604	PWY-6891	thiazole biosynthesis II (Bacillus)
Clopa_3604	PWY-6892	thiazole biosynthesis I (E. coli)
Clopa_3604	PWY-7560	methylerythritol phosphate pathway II
Clopa_3607	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Clopa_3609	PWY-6938	NADH repair
Clopa_3610	PWY-6012	acyl carrier protein metabolism I
Clopa_3610	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Clopa_3620	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Clopa_3620	PWY-5723	Rubisco shunt
Clopa_3622	PWY-6349	CDP-archaeol biosynthesis
Clopa_3632	PWY-1042	glycolysis IV (plant cytosol)
Clopa_3632	PWY-1622	formaldehyde assimilation I (serine pathway)
Clopa_3632	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Clopa_3632	PWY-5484	glycolysis II (from fructose 6-phosphate)
Clopa_3632	PWY-5723	Rubisco shunt
Clopa_3632	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Clopa_3632	PWY-6886	1-butanol autotrophic biosynthesis
Clopa_3632	PWY-6901	superpathway of glucose and xylose degradation
Clopa_3632	PWY-7003	glycerol degradation to butanol
Clopa_3632	PWY-7124	ethylene biosynthesis V (engineered)
Clopa_3632	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Clopa_3633	PWY-1042	glycolysis IV (plant cytosol)
Clopa_3633	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Clopa_3633	PWY-5484	glycolysis II (from fructose 6-phosphate)
Clopa_3633	PWY-5723	Rubisco shunt
Clopa_3633	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Clopa_3633	PWY-6886	1-butanol autotrophic biosynthesis
Clopa_3633	PWY-6901	superpathway of glucose and xylose degradation
Clopa_3633	PWY-7003	glycerol degradation to butanol
Clopa_3633	PWY-7124	ethylene biosynthesis V (engineered)
Clopa_3633	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Clopa_3634	PWY-1042	glycolysis IV (plant cytosol)
Clopa_3634	PWY-5484	glycolysis II (from fructose 6-phosphate)
Clopa_3634	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Clopa_3634	PWY-7003	glycerol degradation to butanol
Clopa_3635	PWY-1042	glycolysis IV (plant cytosol)
Clopa_3635	PWY-5484	glycolysis II (from fructose 6-phosphate)
Clopa_3635	PWY-6886	1-butanol autotrophic biosynthesis
Clopa_3635	PWY-6901	superpathway of glucose and xylose degradation
Clopa_3635	PWY-7003	glycerol degradation to butanol
Clopa_3636	PWY-1042	glycolysis IV (plant cytosol)
Clopa_3636	PWY-5484	glycolysis II (from fructose 6-phosphate)
Clopa_3636	PWY-6901	superpathway of glucose and xylose degradation
Clopa_3636	PWY-7003	glycerol degradation to butanol
Clopa_3664	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Clopa_3664	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Clopa_3681	PWY-4261	glycerol degradation I
Clopa_3683	PWY-7310	D-glucosaminate degradation
Clopa_3723	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Clopa_3723	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Clopa_3735	PWY-1042	glycolysis IV (plant cytosol)
Clopa_3735	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Clopa_3735	PWY-5484	glycolysis II (from fructose 6-phosphate)
Clopa_3735	PWY-5723	Rubisco shunt
Clopa_3735	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Clopa_3735	PWY-6886	1-butanol autotrophic biosynthesis
Clopa_3735	PWY-6901	superpathway of glucose and xylose degradation
Clopa_3735	PWY-7003	glycerol degradation to butanol
Clopa_3735	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Clopa_3735	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Clopa_3765	PWY-7310	D-glucosaminate degradation
Clopa_3783	PWY-1042	glycolysis IV (plant cytosol)
Clopa_3783	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Clopa_3783	PWY-5484	glycolysis II (from fructose 6-phosphate)
Clopa_3783	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Clopa_3783	PWY-7385	1,3-propanediol biosynthesis (engineered)
Clopa_3802	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Clopa_3858	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Clopa_3858	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Clopa_3887	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Clopa_3887	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Clopa_3904	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Clopa_3911	PWY-7310	D-glucosaminate degradation
Clopa_3912	PWY-7310	D-glucosaminate degradation
Clopa_3918	PWY-7310	D-glucosaminate degradation
Clopa_3924	PWY-7310	D-glucosaminate degradation
Clopa_3945	PWY-2721	trehalose degradation III
Clopa_3945	PWY-2722	trehalose degradation IV
Clopa_3945	PWY-6317	galactose degradation I (Leloir pathway)
Clopa_3945	PWY-7459	kojibiose degradation
Clopa_3978	PWY-6654	phosphopantothenate biosynthesis III
Clopa_3980	PWY-5155	&beta;-alanine biosynthesis III
Clopa_3986	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Clopa_3987	PWY-6871	3-methylbutanol biosynthesis
Clopa_3997	PWY-621	sucrose degradation III (sucrose invertase)
Clopa_4011	PWY-282	cuticular wax biosynthesis
Clopa_4016	PWY-6349	CDP-archaeol biosynthesis
Clopa_4019	PWY-5480	pyruvate fermentation to ethanol I
Clopa_4019	PWY-5485	pyruvate fermentation to acetate IV
Clopa_4019	PWY-5493	reductive monocarboxylic acid cycle
Clopa_4020	PWY-1042	glycolysis IV (plant cytosol)
Clopa_4020	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Clopa_4020	PWY-5484	glycolysis II (from fructose 6-phosphate)
Clopa_4020	PWY-7385	1,3-propanediol biosynthesis (engineered)
Clopa_4028	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Clopa_4028	PWY-5723	Rubisco shunt
Clopa_4031	PWY-6891	thiazole biosynthesis II (Bacillus)
Clopa_4031	PWY-6892	thiazole biosynthesis I (E. coli)
Clopa_4031	PWY-7560	methylerythritol phosphate pathway II
Clopa_4034	PWY-3162	L-tryptophan degradation V (side chain pathway)
Clopa_4034	PWY-5057	L-valine degradation II
Clopa_4034	PWY-5076	L-leucine degradation III
Clopa_4034	PWY-5078	L-isoleucine degradation II
Clopa_4034	PWY-5079	L-phenylalanine degradation III
Clopa_4034	PWY-5082	L-methionine degradation III
Clopa_4034	PWY-5480	pyruvate fermentation to ethanol I
Clopa_4034	PWY-5486	pyruvate fermentation to ethanol II
Clopa_4034	PWY-5751	phenylethanol biosynthesis
Clopa_4034	PWY-6028	acetoin degradation
Clopa_4034	PWY-6313	serotonin degradation
Clopa_4034	PWY-6333	acetaldehyde biosynthesis I
Clopa_4034	PWY-6342	noradrenaline and adrenaline degradation
Clopa_4034	PWY-6587	pyruvate fermentation to ethanol III
Clopa_4034	PWY-6802	salidroside biosynthesis
Clopa_4034	PWY-6871	3-methylbutanol biosynthesis
Clopa_4034	PWY-7013	L-1,2-propanediol degradation
Clopa_4034	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Clopa_4034	PWY-7118	chitin degradation to ethanol
Clopa_4034	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Clopa_4034	PWY-7557	dehydrodiconiferyl alcohol degradation
Clopa_4042	PWY-5381	pyridine nucleotide cycling (plants)
Clopa_4042	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Clopa_4042	PWY-6596	adenosine nucleotides degradation I
Clopa_4042	PWY-6606	guanosine nucleotides degradation II
Clopa_4042	PWY-6607	guanosine nucleotides degradation I
Clopa_4042	PWY-6608	guanosine nucleotides degradation III
Clopa_4042	PWY-7185	UTP and CTP dephosphorylation I
Clopa_4043	PWY-6936	seleno-amino acid biosynthesis
Clopa_4080	PWY-2941	L-lysine biosynthesis II
Clopa_4080	PWY-2942	L-lysine biosynthesis III
Clopa_4080	PWY-5097	L-lysine biosynthesis VI
Clopa_4080	PWY-6559	spermidine biosynthesis II
Clopa_4080	PWY-6562	norspermidine biosynthesis
Clopa_4080	PWY-7153	grixazone biosynthesis
Clopa_4081	PWY-6834	spermidine biosynthesis III
Clopa_4085	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Clopa_4085	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Clopa_4085	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Clopa_4085	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Clopa_4099	PWY-6610	adenine and adenosine salvage IV
Clopa_4110	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Clopa_4110	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Clopa_4110	PWY-6269	adenosylcobalamin salvage from cobinamide II
Clopa_4111	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Clopa_4111	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Clopa_4111	PWY-6269	adenosylcobalamin salvage from cobinamide II
Clopa_4112	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Clopa_4112	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Clopa_4112	PWY-6269	adenosylcobalamin salvage from cobinamide II
Clopa_4119	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Clopa_4119	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Clopa_4119	PWY-6897	thiamin salvage II
Clopa_4119	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Clopa_4119	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Clopa_4119	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Clopa_4119	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Clopa_4120	PWY-6892	thiazole biosynthesis I (E. coli)
Clopa_4120	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Clopa_4121	PWY-6891	thiazole biosynthesis II (Bacillus)
Clopa_4121	PWY-6892	thiazole biosynthesis I (E. coli)
Clopa_4123	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Clopa_4147	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Clopa_4147	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Clopa_4158	PWY-6605	adenine and adenosine salvage II
Clopa_4158	PWY-6610	adenine and adenosine salvage IV
Clopa_4166	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Clopa_4166	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Clopa_4180	PWY-5344	L-homocysteine biosynthesis
Clopa_4180	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Clopa_4184	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Clopa_4184	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Clopa_4186	PWY-6349	CDP-archaeol biosynthesis
Clopa_4190	PWY-6823	molybdenum cofactor biosynthesis
Clopa_4191	PWY-5344	L-homocysteine biosynthesis
Clopa_4191	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Clopa_4192	PWY-6936	seleno-amino acid biosynthesis
Clopa_4205	PWY-6936	seleno-amino acid biosynthesis
Clopa_4231	PWY-4981	L-proline biosynthesis II (from arginine)
Clopa_4235	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Clopa_4235	PWY-5723	Rubisco shunt
Clopa_4244	PWY-6823	molybdenum cofactor biosynthesis
Clopa_4245	PWY-6823	molybdenum cofactor biosynthesis
Clopa_4268	PWY-6683	sulfate reduction III (assimilatory)
Clopa_4335	PWY-6317	galactose degradation I (Leloir pathway)
Clopa_4335	PWY-6527	stachyose degradation
Clopa_4336	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Clopa_4337	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Clopa_4337	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Clopa_4337	PWY-5194	siroheme biosynthesis
Clopa_4337	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Clopa_4338	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Clopa_4338	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Clopa_4339	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Clopa_4340	PWY-5278	sulfite oxidation III
Clopa_4340	PWY-5340	sulfate activation for sulfonation
Clopa_4340	PWY-6683	sulfate reduction III (assimilatory)
Clopa_4340	PWY-6932	selenate reduction
Clopa_4348	PWY-5340	sulfate activation for sulfonation
Clopa_4349	PWY-5344	L-homocysteine biosynthesis
Clopa_4349	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Clopa_4350	PWY-6683	sulfate reduction III (assimilatory)
Clopa_4355	PWY-5194	siroheme biosynthesis
Clopa_4355	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Clopa_4365	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Clopa_4365	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Clopa_4376	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Clopa_4376	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Clopa_4379	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Clopa_4381	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Clopa_4388	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
Clopa_4389	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Clopa_4389	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Clopa_4389	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Clopa_4390	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Clopa_4395	PWY-6349	CDP-archaeol biosynthesis
Clopa_4401	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Clopa_4401	PWY-5723	Rubisco shunt
Clopa_4401	PWY-6891	thiazole biosynthesis II (Bacillus)
Clopa_4401	PWY-6892	thiazole biosynthesis I (E. coli)
Clopa_4401	PWY-6901	superpathway of glucose and xylose degradation
Clopa_4401	PWY-7560	methylerythritol phosphate pathway II
Clopa_4405	PWY-5750	itaconate biosynthesis
Clopa_4405	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Clopa_4405	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Clopa_4412	PWY-5659	GDP-mannose biosynthesis
Clopa_4412	PWY-6073	alginate biosynthesis I (algal)
Clopa_4412	PWY-6082	alginate biosynthesis II (bacterial)
Clopa_4412	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Clopa_4421	PWY-3801	sucrose degradation II (sucrose synthase)
Clopa_4421	PWY-5054	sorbitol biosynthesis I
Clopa_4421	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Clopa_4421	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Clopa_4421	PWY-5659	GDP-mannose biosynthesis
Clopa_4421	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Clopa_4421	PWY-621	sucrose degradation III (sucrose invertase)
Clopa_4421	PWY-622	starch biosynthesis
Clopa_4421	PWY-6531	mannitol cycle
Clopa_4421	PWY-6981	chitin biosynthesis
Clopa_4421	PWY-7238	sucrose biosynthesis II
Clopa_4421	PWY-7347	sucrose biosynthesis III
Clopa_4421	PWY-7385	1,3-propanediol biosynthesis (engineered)
Clopa_4440	PWY-6749	CMP-legionaminate biosynthesis I
Clopa_4447	PWY-5482	pyruvate fermentation to acetate II
Clopa_4447	PWY-5485	pyruvate fermentation to acetate IV
Clopa_4447	PWY-5497	purine nucleobases degradation II (anaerobic)
Clopa_4448	PWY-1281	sulfoacetaldehyde degradation I
Clopa_4448	PWY-5482	pyruvate fermentation to acetate II
Clopa_4448	PWY-5485	pyruvate fermentation to acetate IV
Clopa_4448	PWY-5497	purine nucleobases degradation II (anaerobic)
Clopa_4448	PWY-6637	sulfolactate degradation II
Clopa_4460	PWY-7310	D-glucosaminate degradation
Clopa_4466	PWY-7310	D-glucosaminate degradation
Clopa_4491	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Clopa_4535	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Clopa_4538	PWY-7560	methylerythritol phosphate pathway II
Clopa_4556	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Clopa_4556	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Clopa_4563	PWY-3961	phosphopantothenate biosynthesis II
Clopa_4564	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Clopa_4564	PWY-2161	folate polyglutamylation
Clopa_4564	PWY-2201	folate transformations I
Clopa_4564	PWY-3841	folate transformations II
Clopa_4566	PWY-6599	guanine and guanosine salvage II
Clopa_4566	PWY-6609	adenine and adenosine salvage III
Clopa_4566	PWY-6610	adenine and adenosine salvage IV
Clopa_4566	PWY-6620	guanine and guanosine salvage
Clopa_4593	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Clopa_4596	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Clopa_4596	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Clopa_4622	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Clopa_4622	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Clopa_4623	PWY-381	nitrate reduction II (assimilatory)
Clopa_4623	PWY-5675	nitrate reduction V (assimilatory)
Clopa_4623	PWY-6549	L-glutamine biosynthesis III
Clopa_4623	PWY-6963	ammonia assimilation cycle I
Clopa_4623	PWY-6964	ammonia assimilation cycle II
Clopa_4624	PWY-3341	L-proline biosynthesis III
Clopa_4624	PWY-4981	L-proline biosynthesis II (from arginine)
Clopa_4624	PWY-6344	L-ornithine degradation II (Stickland reaction)
Clopa_4658	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Clopa_4658	PWY-6416	quinate degradation II
Clopa_4658	PWY-6707	gallate biosynthesis
Clopa_4659	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Clopa_4660	PWY-3461	L-tyrosine biosynthesis II
Clopa_4660	PWY-3462	L-phenylalanine biosynthesis II
Clopa_4660	PWY-6120	L-tyrosine biosynthesis III
Clopa_4660	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Clopa_4660	PWY-6627	salinosporamide A biosynthesis
Clopa_4661	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Clopa_4662	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Clopa_4663	PWY-6164	3-dehydroquinate biosynthesis I
Clopa_4665	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Clopa_4665	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Clopa_4665	PWY-6164	3-dehydroquinate biosynthesis I
Clopa_4670	PWY-6349	CDP-archaeol biosynthesis
Clopa_4672	PWY-6823	molybdenum cofactor biosynthesis
Clopa_4672	PWY-6891	thiazole biosynthesis II (Bacillus)
Clopa_4672	PWY-6892	thiazole biosynthesis I (E. coli)
Clopa_4672	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Clopa_4710	PWY-7242	D-fructuronate degradation
Clopa_4711	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
Clopa_4711	PWY-7248	pectin degradation III
Clopa_4723	PWY-2941	L-lysine biosynthesis II
Clopa_4723	PWY-2942	L-lysine biosynthesis III
Clopa_4723	PWY-5097	L-lysine biosynthesis VI
Clopa_4723	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Clopa_4723	PWY-6559	spermidine biosynthesis II
Clopa_4723	PWY-6562	norspermidine biosynthesis
Clopa_4723	PWY-7153	grixazone biosynthesis
Clopa_4723	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Clopa_4736	PWY-5480	pyruvate fermentation to ethanol I
Clopa_4736	PWY-5485	pyruvate fermentation to acetate IV
Clopa_4736	PWY-5493	reductive monocarboxylic acid cycle
Clopa_4782	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Clopa_4782	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Clopa_4784	PWY-5057	L-valine degradation II
Clopa_4784	PWY-5076	L-leucine degradation III
Clopa_4784	PWY-5078	L-isoleucine degradation II
Clopa_4784	PWY-5101	L-isoleucine biosynthesis II
Clopa_4784	PWY-5103	L-isoleucine biosynthesis III
Clopa_4784	PWY-5104	L-isoleucine biosynthesis IV
Clopa_4784	PWY-5108	L-isoleucine biosynthesis V
Clopa_4801	PWY-5381	pyridine nucleotide cycling (plants)
Clopa_4803	PWY-5481	pyruvate fermentation to lactate
Clopa_4803	PWY-6901	superpathway of glucose and xylose degradation
Clopa_4804	PWY-4381	fatty acid biosynthesis initiation I
Clopa_4804	PWY-5743	3-hydroxypropanoate cycle
Clopa_4804	PWY-5744	glyoxylate assimilation
Clopa_4804	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Clopa_4804	PWY-6679	jadomycin biosynthesis
Clopa_4804	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Clopa_4805	PWY-4381	fatty acid biosynthesis initiation I
Clopa_4805	PWY-5743	3-hydroxypropanoate cycle
Clopa_4805	PWY-5744	glyoxylate assimilation
Clopa_4805	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Clopa_4805	PWY-6679	jadomycin biosynthesis
Clopa_4805	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Clopa_4807	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Clopa_4807	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Clopa_4807	PWY-5989	stearate biosynthesis II (bacteria and plants)
Clopa_4807	PWY-5994	palmitate biosynthesis I (animals and fungi)
Clopa_4807	PWY-6113	superpathway of mycolate biosynthesis
Clopa_4807	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Clopa_4807	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Clopa_4807	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Clopa_4807	PWYG-321	mycolate biosynthesis
Clopa_4810	PWY-5367	petroselinate biosynthesis
Clopa_4810	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Clopa_4810	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Clopa_4810	PWY-5989	stearate biosynthesis II (bacteria and plants)
Clopa_4810	PWY-5994	palmitate biosynthesis I (animals and fungi)
Clopa_4810	PWY-6113	superpathway of mycolate biosynthesis
Clopa_4810	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Clopa_4810	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Clopa_4810	PWY-6951	Clopa_4810
Clopa_4810	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Clopa_4810	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Clopa_4810	PWYG-321	mycolate biosynthesis
Clopa_4811	PWY-4381	fatty acid biosynthesis initiation I
Clopa_4811	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Clopa_4811	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Clopa_4812	PWY-723	alkylnitronates degradation
Clopa_4813	PWY-4381	fatty acid biosynthesis initiation I
Clopa_4815	PWY-723	alkylnitronates degradation
Clopa_4821	PWY-2201	folate transformations I
Clopa_4821	PWY-3841	folate transformations II
Clopa_4834	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Clopa_4837	PWY-7533	gliotoxin biosynthesis
Clopa_4842	PWY-7310	D-glucosaminate degradation
Clopa_4843	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Clopa_4843	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Clopa_4874	PWY-5101	L-isoleucine biosynthesis II
Clopa_4874	PWY-5103	L-isoleucine biosynthesis III
Clopa_4874	PWY-5104	L-isoleucine biosynthesis IV
Clopa_4874	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Clopa_4878	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Clopa_4878	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Clopa_4878	PWY-7242	D-fructuronate degradation
Clopa_4878	PWY-7310	D-glucosaminate degradation
