Cphy_0010	PWY-5344	L-homocysteine biosynthesis
Cphy_0010	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Cphy_0011	PWY-6936	seleno-amino acid biosynthesis
Cphy_0013	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cphy_0013	PWY-5723	Rubisco shunt
Cphy_0014	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cphy_0014	PWY-5723	Rubisco shunt
Cphy_0014	PWY-6891	thiazole biosynthesis II (Bacillus)
Cphy_0014	PWY-6892	thiazole biosynthesis I (E. coli)
Cphy_0014	PWY-6901	superpathway of glucose and xylose degradation
Cphy_0014	PWY-7560	methylerythritol phosphate pathway II
Cphy_0041	PWY-4261	glycerol degradation I
Cphy_0049	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Cphy_0054	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cphy_0054	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Cphy_0054	PWY-7242	D-fructuronate degradation
Cphy_0054	PWY-7310	D-glucosaminate degradation
Cphy_0084	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphy_0084	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphy_0107	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphy_0107	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphy_0140	PWY-6599	guanine and guanosine salvage II
Cphy_0140	PWY-6609	adenine and adenosine salvage III
Cphy_0140	PWY-6610	adenine and adenosine salvage IV
Cphy_0140	PWY-6620	guanine and guanosine salvage
Cphy_0181	PWY-6823	molybdenum cofactor biosynthesis
Cphy_0181	PWY-6891	thiazole biosynthesis II (Bacillus)
Cphy_0181	PWY-6892	thiazole biosynthesis I (E. coli)
Cphy_0181	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Cphy_0189	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cphy_0205	PWY-6854	ethylene biosynthesis III (microbes)
Cphy_0221	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cphy_0233	PWY-5667	CDP-diacylglycerol biosynthesis I
Cphy_0233	PWY-5981	CDP-diacylglycerol biosynthesis III
Cphy_0233	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
Cphy_0233	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Cphy_0264	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cphy_0302	PWY-2941	L-lysine biosynthesis II
Cphy_0302	PWY-2942	L-lysine biosynthesis III
Cphy_0302	PWY-5097	L-lysine biosynthesis VI
Cphy_0318	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cphy_0318	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cphy_0318	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cphy_0318	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cphy_0325	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Cphy_0325	PWY-7177	UTP and CTP dephosphorylation II
Cphy_0325	PWY-7185	UTP and CTP dephosphorylation I
Cphy_0329	PWY-2723	trehalose degradation V
Cphy_0329	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cphy_0329	PWY-5661	GDP-glucose biosynthesis
Cphy_0329	PWY-7238	sucrose biosynthesis II
Cphy_0329	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cphy_0330	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphy_0330	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphy_0336	PWY-1042	glycolysis IV (plant cytosol)
Cphy_0336	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cphy_0336	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphy_0336	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cphy_0353	PWY-7560	methylerythritol phosphate pathway II
Cphy_0369	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Cphy_0375	PWY-6749	CMP-legionaminate biosynthesis I
Cphy_0410	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cphy_0419	PWY-3801	sucrose degradation II (sucrose synthase)
Cphy_0419	PWY-5054	sorbitol biosynthesis I
Cphy_0419	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Cphy_0419	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cphy_0419	PWY-5659	GDP-mannose biosynthesis
Cphy_0419	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cphy_0419	PWY-621	sucrose degradation III (sucrose invertase)
Cphy_0419	PWY-622	starch biosynthesis
Cphy_0419	PWY-6531	mannitol cycle
Cphy_0419	PWY-6981	chitin biosynthesis
Cphy_0419	PWY-7238	sucrose biosynthesis II
Cphy_0419	PWY-7347	sucrose biosynthesis III
Cphy_0419	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cphy_0421	PWY-4981	L-proline biosynthesis II (from arginine)
Cphy_0421	PWY-4984	urea cycle
Cphy_0421	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cphy_0424	PWY-3961	phosphopantothenate biosynthesis II
Cphy_0426	PWY-2941	L-lysine biosynthesis II
Cphy_0426	PWY-2942	L-lysine biosynthesis III
Cphy_0426	PWY-5097	L-lysine biosynthesis VI
Cphy_0426	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cphy_0426	PWY-6559	spermidine biosynthesis II
Cphy_0426	PWY-6562	norspermidine biosynthesis
Cphy_0426	PWY-7153	grixazone biosynthesis
Cphy_0426	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cphy_0455	PWY-6936	seleno-amino acid biosynthesis
Cphy_0489	PWY-6986	alginate degradation
Cphy_0516	PWY-4381	fatty acid biosynthesis initiation I
Cphy_0516	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Cphy_0516	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cphy_0517	PWY-5367	petroselinate biosynthesis
Cphy_0517	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Cphy_0517	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Cphy_0517	PWY-5989	stearate biosynthesis II (bacteria and plants)
Cphy_0517	PWY-5994	palmitate biosynthesis I (animals and fungi)
Cphy_0517	PWY-6113	superpathway of mycolate biosynthesis
Cphy_0517	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Cphy_0517	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cphy_0517	PWY-6951	Cphy_0517|Cphy_0517|YP_001557643.1|GeneID:5743431
Cphy_0517	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Cphy_0517	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cphy_0517	PWYG-321	mycolate biosynthesis
Cphy_0520	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Cphy_0520	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Cphy_0520	PWY-5989	stearate biosynthesis II (bacteria and plants)
Cphy_0520	PWY-5994	palmitate biosynthesis I (animals and fungi)
Cphy_0520	PWY-6113	superpathway of mycolate biosynthesis
Cphy_0520	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Cphy_0520	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cphy_0520	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cphy_0520	PWYG-321	mycolate biosynthesis
Cphy_0522	PWY-4381	fatty acid biosynthesis initiation I
Cphy_0522	PWY-5743	3-hydroxypropanoate cycle
Cphy_0522	PWY-5744	glyoxylate assimilation
Cphy_0522	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cphy_0522	PWY-6679	jadomycin biosynthesis
Cphy_0522	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cphy_0523	PWY-4381	fatty acid biosynthesis initiation I
Cphy_0523	PWY-5743	3-hydroxypropanoate cycle
Cphy_0523	PWY-5744	glyoxylate assimilation
Cphy_0523	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cphy_0523	PWY-6679	jadomycin biosynthesis
Cphy_0523	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cphy_0530	PWY-6807	xyloglucan degradation II (exoglucanase)
Cphy_0535	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphy_0535	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphy_0535	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphy_0537	PWY-5057	L-valine degradation II
Cphy_0537	PWY-5076	L-leucine degradation III
Cphy_0537	PWY-5078	L-isoleucine degradation II
Cphy_0537	PWY-5101	L-isoleucine biosynthesis II
Cphy_0537	PWY-5103	L-isoleucine biosynthesis III
Cphy_0537	PWY-5104	L-isoleucine biosynthesis IV
Cphy_0537	PWY-5108	L-isoleucine biosynthesis V
Cphy_0540	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cphy_0540	PWY-5686	UMP biosynthesis
Cphy_0540	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cphy_0541	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cphy_0541	PWY-5686	UMP biosynthesis
Cphy_0541	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cphy_0547	PWY-6605	adenine and adenosine salvage II
Cphy_0547	PWY-6610	adenine and adenosine salvage IV
Cphy_0556	PWY-2723	trehalose degradation V
Cphy_0556	PWY-6317	galactose degradation I (Leloir pathway)
Cphy_0556	PWY-6737	starch degradation V
Cphy_0557	PWY-7183	pyrimidine nucleobases salvage I
Cphy_0571	PWY-3821	galactose degradation III
Cphy_0571	PWY-6317	galactose degradation I (Leloir pathway)
Cphy_0571	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Cphy_0571	PWY-6527	stachyose degradation
Cphy_0571	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Cphy_0571	PWY-7344	UDP-D-galactose biosynthesis
Cphy_0606	PWY-4202	arsenate detoxification I (glutaredoxin)
Cphy_0606	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Cphy_0606	PWY-6608	guanosine nucleotides degradation III
Cphy_0606	PWY-6609	adenine and adenosine salvage III
Cphy_0606	PWY-6611	adenine and adenosine salvage V
Cphy_0606	PWY-6620	guanine and guanosine salvage
Cphy_0606	PWY-6627	salinosporamide A biosynthesis
Cphy_0606	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Cphy_0606	PWY-7179	purine deoxyribonucleosides degradation I
Cphy_0606	PWY-7179-1	purine deoxyribonucleosides degradation
Cphy_0607	PWY-6902	chitin degradation II
Cphy_0624	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cphy_0628	PWY-381	nitrate reduction II (assimilatory)
Cphy_0628	PWY-5675	nitrate reduction V (assimilatory)
Cphy_0628	PWY-6549	L-glutamine biosynthesis III
Cphy_0628	PWY-6963	ammonia assimilation cycle I
Cphy_0628	PWY-6964	ammonia assimilation cycle II
Cphy_0630	PWY-2941	L-lysine biosynthesis II
Cphy_0630	PWY-5097	L-lysine biosynthesis VI
Cphy_0631	PWY-5097	L-lysine biosynthesis VI
Cphy_0638	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Cphy_0643	PWY-6123	inosine-5'-phosphate biosynthesis I
Cphy_0643	PWY-6124	inosine-5'-phosphate biosynthesis II
Cphy_0643	PWY-7234	inosine-5'-phosphate biosynthesis III
Cphy_0651	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Cphy_0651	PWY-6549	L-glutamine biosynthesis III
Cphy_0651	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cphy_0651	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Cphy_0656	PWY-3861	mannitol degradation II
Cphy_0656	PWY-3881	mannitol biosynthesis
Cphy_0656	PWY-5659	GDP-mannose biosynthesis
Cphy_0656	PWY-7456	mannan degradation
Cphy_0656	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Cphy_0669	PWY-3821	galactose degradation III
Cphy_0669	PWY-6317	galactose degradation I (Leloir pathway)
Cphy_0669	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Cphy_0669	PWY-6527	stachyose degradation
Cphy_0669	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Cphy_0669	PWY-7344	UDP-D-galactose biosynthesis
Cphy_0670	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cphy_0687	PWY-5704	urea degradation II
Cphy_0688	PWY-5704	urea degradation II
Cphy_0689	PWY-5704	urea degradation II
Cphy_0711	PWY-6807	xyloglucan degradation II (exoglucanase)
Cphy_0741	PWY-1042	glycolysis IV (plant cytosol)
Cphy_0741	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cphy_0741	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphy_0741	PWY-5723	Rubisco shunt
Cphy_0741	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cphy_0741	PWY-6886	1-butanol autotrophic biosynthesis
Cphy_0741	PWY-6901	superpathway of glucose and xylose degradation
Cphy_0741	PWY-7003	glycerol degradation to butanol
Cphy_0741	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Cphy_0741	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cphy_0752	PWY-4202	arsenate detoxification I (glutaredoxin)
Cphy_0752	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Cphy_0752	PWY-6608	guanosine nucleotides degradation III
Cphy_0752	PWY-6609	adenine and adenosine salvage III
Cphy_0752	PWY-6611	adenine and adenosine salvage V
Cphy_0752	PWY-6620	guanine and guanosine salvage
Cphy_0752	PWY-6627	salinosporamide A biosynthesis
Cphy_0752	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Cphy_0752	PWY-7179	purine deoxyribonucleosides degradation I
Cphy_0752	PWY-7179-1	purine deoxyribonucleosides degradation
Cphy_0753	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Cphy_0754	PWY-6556	pyrimidine ribonucleosides salvage II
Cphy_0754	PWY-7181	pyrimidine deoxyribonucleosides degradation
Cphy_0754	PWY-7193	pyrimidine ribonucleosides salvage I
Cphy_0754	PWY-7199	pyrimidine deoxyribonucleosides salvage
Cphy_0780	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cphy_0780	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cphy_0881	PWY-5686	UMP biosynthesis
Cphy_0882	PWY-5686	UMP biosynthesis
Cphy_0889	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Cphy_0889	PWY-6153	autoinducer AI-2 biosynthesis I
Cphy_0889	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
Cphy_0893	PWY-5506	methanol oxidation to formaldehyde IV
Cphy_0903	PWY-6012	acyl carrier protein metabolism I
Cphy_0903	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Cphy_0904	PWY-6938	NADH repair
Cphy_0905	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cphy_0965	PWY-7193	pyrimidine ribonucleosides salvage I
Cphy_0990	PWY-6910	hydroxymethylpyrimidine salvage
Cphy_0990	PWY-7356	thiamin salvage IV (yeast)
Cphy_0990	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cphy_1021	PWY-2721	trehalose degradation III
Cphy_1021	PWY-2722	trehalose degradation IV
Cphy_1021	PWY-6317	galactose degradation I (Leloir pathway)
Cphy_1021	PWY-7459	kojibiose degradation
Cphy_1043	PWY-6823	molybdenum cofactor biosynthesis
Cphy_1061	PWY-7242	D-fructuronate degradation
Cphy_1071	PWY-7456	mannan degradation
Cphy_1105	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cphy_1105	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cphy_1105	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cphy_1106	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cphy_1106	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cphy_1106	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cphy_1107	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cphy_1107	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cphy_1107	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cphy_1108	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cphy_1108	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cphy_1108	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cphy_1113	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cphy_1113	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cphy_1113	PWY-6268	adenosylcobalamin salvage from cobalamin
Cphy_1113	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cphy_1115	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Cphy_1117	PWY-5481	pyruvate fermentation to lactate
Cphy_1117	PWY-6901	superpathway of glucose and xylose degradation
Cphy_1137	PWY-5381	pyridine nucleotide cycling (plants)
Cphy_1166	PWY-3821	galactose degradation III
Cphy_1166	PWY-6317	galactose degradation I (Leloir pathway)
Cphy_1166	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Cphy_1166	PWY-6527	stachyose degradation
Cphy_1166	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Cphy_1166	PWY-7344	UDP-D-galactose biosynthesis
Cphy_1167	PWY-6317	galactose degradation I (Leloir pathway)
Cphy_1167	PWY-6527	stachyose degradation
Cphy_1183	PWY-5437	L-threonine degradation I
Cphy_1183	PWY-7013	L-1,2-propanediol degradation
Cphy_1203	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cphy_1203	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Cphy_1203	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cphy_1203	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cphy_1210	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Cphy_1216	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cphy_1216	PWY-5723	Rubisco shunt
Cphy_1232	PWY-5481	pyruvate fermentation to lactate
Cphy_1232	PWY-6901	superpathway of glucose and xylose degradation
Cphy_1234	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphy_1234	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphy_1301	PWY-1081	homogalacturonan degradation
Cphy_1301	PWY-7246	pectin degradation II
Cphy_1301	PWY-7248	pectin degradation III
Cphy_1309	PWY-2201	folate transformations I
Cphy_1309	PWY-3841	folate transformations II
Cphy_1317	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphy_1317	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphy_1326	PWY-1281	sulfoacetaldehyde degradation I
Cphy_1326	PWY-5482	pyruvate fermentation to acetate II
Cphy_1326	PWY-5485	pyruvate fermentation to acetate IV
Cphy_1326	PWY-5497	purine nucleobases degradation II (anaerobic)
Cphy_1326	PWY-6637	sulfolactate degradation II
Cphy_1327	PWY-5482	pyruvate fermentation to acetate II
Cphy_1327	PWY-5485	pyruvate fermentation to acetate IV
Cphy_1327	PWY-5497	purine nucleobases degradation II (anaerobic)
Cphy_1345	PWY-3461	L-tyrosine biosynthesis II
Cphy_1345	PWY-3462	L-phenylalanine biosynthesis II
Cphy_1345	PWY-6120	L-tyrosine biosynthesis III
Cphy_1345	PWY-6627	salinosporamide A biosynthesis
Cphy_1345	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Cphy_1368	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cphy_1369	PWY-5194	siroheme biosynthesis
Cphy_1369	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cphy_1370	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cphy_1370	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cphy_1371	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cphy_1371	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cphy_1371	PWY-5194	siroheme biosynthesis
Cphy_1371	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cphy_1372	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cphy_1372	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cphy_1373	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cphy_1374	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cphy_1377	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cphy_1379	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cphy_1381	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cphy_1381	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cphy_1381	PWY-6268	adenosylcobalamin salvage from cobalamin
Cphy_1381	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cphy_1387	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cphy_1429	PWY-5437	L-threonine degradation I
Cphy_1429	PWY-7013	L-1,2-propanediol degradation
Cphy_1432	PWY-6825	phosphatidylcholine biosynthesis V
Cphy_1464	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Cphy_1464	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cphy_1464	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cphy_1464	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Cphy_1480	PWY-6823	molybdenum cofactor biosynthesis
Cphy_1486	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Cphy_1489	PWY-6823	molybdenum cofactor biosynthesis
Cphy_1489	PWY-6891	thiazole biosynthesis II (Bacillus)
Cphy_1489	PWY-6892	thiazole biosynthesis I (E. coli)
Cphy_1489	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Cphy_1510	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cphy_1521	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cphy_1521	PWY-6855	chitin degradation I (archaea)
Cphy_1521	PWY-6906	chitin derivatives degradation
Cphy_1541	PWY-1622	formaldehyde assimilation I (serine pathway)
Cphy_1541	PWY-5392	reductive TCA cycle II
Cphy_1541	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cphy_1541	PWY-5690	TCA cycle II (plants and fungi)
Cphy_1541	PWY-5913	TCA cycle VI (obligate autotrophs)
Cphy_1541	PWY-6728	methylaspartate cycle
Cphy_1541	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cphy_1541	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cphy_1541	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cphy_1542	PWY-6984	lipoate salvage II
Cphy_1542	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Cphy_1542	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Cphy_1543	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Cphy_1543	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Cphy_1608	PWY-5269	cardiolipin biosynthesis II
Cphy_1608	PWY-5668	cardiolipin biosynthesis I
Cphy_1627	PWY-282	cuticular wax biosynthesis
Cphy_1640	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cphy_1644	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphy_1644	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphy_1663	PWY-5386	methylglyoxal degradation I
Cphy_1684	PWY-6823	molybdenum cofactor biosynthesis
Cphy_1684	PWY-6891	thiazole biosynthesis II (Bacillus)
Cphy_1684	PWY-6892	thiazole biosynthesis I (E. coli)
Cphy_1684	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Cphy_1743	PWY-5451	acetone degradation I (to methylglyoxal)
Cphy_1743	PWY-6588	pyruvate fermentation to acetone
Cphy_1743	PWY-6876	isopropanol biosynthesis
Cphy_1743	PWY-7466	acetone degradation III (to propane-1,2-diol)
Cphy_1756	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Cphy_1756	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Cphy_1768	PWY-7310	D-glucosaminate degradation
Cphy_1779	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cphy_1781	PWY-6683	sulfate reduction III (assimilatory)
Cphy_1784	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cphy_1785	PWY-5194	siroheme biosynthesis
Cphy_1785	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cphy_1786	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cphy_1786	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cphy_1787	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cphy_1787	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cphy_1787	PWY-5194	siroheme biosynthesis
Cphy_1787	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cphy_1788	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cphy_1788	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cphy_1789	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cphy_1799	PWY-6902	chitin degradation II
Cphy_1800	PWY-6902	chitin degradation II
Cphy_1825	PWY-6683	sulfate reduction III (assimilatory)
Cphy_1832	PWY-5278	sulfite oxidation III
Cphy_1832	PWY-5340	sulfate activation for sulfonation
Cphy_1832	PWY-6683	sulfate reduction III (assimilatory)
Cphy_1832	PWY-6932	selenate reduction
Cphy_1833	PWY-5278	sulfite oxidation III
Cphy_1833	PWY-5340	sulfate activation for sulfonation
Cphy_1833	PWY-6683	sulfate reduction III (assimilatory)
Cphy_1833	PWY-6932	selenate reduction
Cphy_1875	PWY-2721	trehalose degradation III
Cphy_1875	PWY-2722	trehalose degradation IV
Cphy_1875	PWY-6317	galactose degradation I (Leloir pathway)
Cphy_1875	PWY-7459	kojibiose degradation
Cphy_1892	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cphy_1892	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Cphy_1892	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cphy_1892	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cphy_1894	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Cphy_1894	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Cphy_1925	PWY-6339	syringate degradation
Cphy_1931	PWY-4983	L-citrulline-nitric oxide cycle
Cphy_1931	PWY-4984	urea cycle
Cphy_1931	PWY-5	canavanine biosynthesis
Cphy_1931	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cphy_1931	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cphy_1936	PWY-6527	stachyose degradation
Cphy_1943	PWY-6902	chitin degradation II
Cphy_1948	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cphy_1948	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cphy_1949	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cphy_1950	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cphy_1950	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cphy_1961	PWY-5669	phosphatidylethanolamine biosynthesis I
Cphy_1981	PWY-5381	pyridine nucleotide cycling (plants)
Cphy_1981	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Cphy_1981	PWY-6596	adenosine nucleotides degradation I
Cphy_1981	PWY-6606	guanosine nucleotides degradation II
Cphy_1981	PWY-6607	guanosine nucleotides degradation I
Cphy_1981	PWY-6608	guanosine nucleotides degradation III
Cphy_1981	PWY-7185	UTP and CTP dephosphorylation I
Cphy_2025	PWY-6807	xyloglucan degradation II (exoglucanase)
Cphy_2026	PWY-6807	xyloglucan degradation II (exoglucanase)
Cphy_2032	PWY-4202	arsenate detoxification I (glutaredoxin)
Cphy_2032	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Cphy_2032	PWY-6608	guanosine nucleotides degradation III
Cphy_2032	PWY-6609	adenine and adenosine salvage III
Cphy_2032	PWY-6611	adenine and adenosine salvage V
Cphy_2032	PWY-6620	guanine and guanosine salvage
Cphy_2032	PWY-6627	salinosporamide A biosynthesis
Cphy_2032	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Cphy_2032	PWY-7179	purine deoxyribonucleosides degradation I
Cphy_2032	PWY-7179-1	purine deoxyribonucleosides degradation
Cphy_2033	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
Cphy_2033	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Cphy_2082	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Cphy_2083	PWY-5198	factor 420 biosynthesis
Cphy_2083	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Cphy_2105	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cphy_2108	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cphy_2128	PWY-7456	mannan degradation
Cphy_2152	PWY-4621	arsenate detoxification II (glutaredoxin)
Cphy_2165	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cphy_2165	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cphy_2179	PWY-6823	molybdenum cofactor biosynthesis
Cphy_2179	PWY-6891	thiazole biosynthesis II (Bacillus)
Cphy_2179	PWY-6892	thiazole biosynthesis I (E. coli)
Cphy_2179	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Cphy_2180	PWY-5350	thiosulfate disproportionation III (rhodanese)
Cphy_2184	PWY-5988	wound-induced proteolysis I
Cphy_2184	PWY-6018	seed germination protein turnover
Cphy_2221	PWY-6828	linezolid resistance
Cphy_2229	PWY-1042	glycolysis IV (plant cytosol)
Cphy_2229	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphy_2229	PWY-6901	superpathway of glucose and xylose degradation
Cphy_2229	PWY-7003	glycerol degradation to butanol
Cphy_2237	PWY-3821	galactose degradation III
Cphy_2237	PWY-6317	galactose degradation I (Leloir pathway)
Cphy_2237	PWY-6527	stachyose degradation
Cphy_2261	PWY-6749	CMP-legionaminate biosynthesis I
Cphy_2262	PWY-7456	mannan degradation
Cphy_2276	PWY-7456	mannan degradation
Cphy_2280	PWY-6700	queuosine biosynthesis
Cphy_2285	PWY-5686	UMP biosynthesis
Cphy_2302	PWY-6823	molybdenum cofactor biosynthesis
Cphy_2302	PWY-6891	thiazole biosynthesis II (Bacillus)
Cphy_2302	PWY-6892	thiazole biosynthesis I (E. coli)
Cphy_2302	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Cphy_2304	PWY-842	starch degradation I
Cphy_2331	PWY-842	starch degradation I
Cphy_2334	PWY-5663	tetrahydrobiopterin biosynthesis I
Cphy_2334	PWY-5664	tetrahydrobiopterin biosynthesis II
Cphy_2334	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cphy_2334	PWY-6703	preQ<sub>0</sub> biosynthesis
Cphy_2334	PWY-6983	tetrahydrobiopterin biosynthesis III
Cphy_2334	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Cphy_2337	PWY-2941	L-lysine biosynthesis II
Cphy_2337	PWY-5097	L-lysine biosynthesis VI
Cphy_2343	PWY-5941	glycogen degradation II (eukaryotic)
Cphy_2343	PWY-6724	starch degradation II
Cphy_2343	PWY-6737	starch degradation V
Cphy_2343	PWY-7238	sucrose biosynthesis II
Cphy_2344	PWY-842	starch degradation I
Cphy_2348	PWY-5941	glycogen degradation II (eukaryotic)
Cphy_2348	PWY-622	starch biosynthesis
Cphy_2348	PWY-6731	starch degradation III
Cphy_2348	PWY-6737	starch degradation V
Cphy_2348	PWY-7238	sucrose biosynthesis II
Cphy_2349	PWY-5941	glycogen degradation II (eukaryotic)
Cphy_2349	PWY-6724	starch degradation II
Cphy_2349	PWY-6737	starch degradation V
Cphy_2349	PWY-7238	sucrose biosynthesis II
Cphy_2352	PWY-2941	L-lysine biosynthesis II
Cphy_2352	PWY-2942	L-lysine biosynthesis III
Cphy_2352	PWY-5097	L-lysine biosynthesis VI
Cphy_2352	PWY-6559	spermidine biosynthesis II
Cphy_2352	PWY-6562	norspermidine biosynthesis
Cphy_2352	PWY-7153	grixazone biosynthesis
Cphy_2358	PWY-6164	3-dehydroquinate biosynthesis I
Cphy_2362	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cphy_2379	PWY-2781	<i>cis</i>-zeatin biosynthesis
Cphy_2386	PWY-7193	pyrimidine ribonucleosides salvage I
Cphy_2388	PWY-5667	CDP-diacylglycerol biosynthesis I
Cphy_2388	PWY-5981	CDP-diacylglycerol biosynthesis III
Cphy_2405	PWY-6829	tRNA methylation (yeast)
Cphy_2405	PWY-7285	methylwyosine biosynthesis
Cphy_2405	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Cphy_2434	PWY-6339	syringate degradation
Cphy_2436	PWY-6339	syringate degradation
Cphy_2437	PWY-4381	fatty acid biosynthesis initiation I
Cphy_2437	PWY-5743	3-hydroxypropanoate cycle
Cphy_2437	PWY-5744	glyoxylate assimilation
Cphy_2437	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cphy_2437	PWY-6679	jadomycin biosynthesis
Cphy_2437	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cphy_2449	PWY-7560	methylerythritol phosphate pathway II
Cphy_2450	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cphy_2450	PWY-7205	CMP phosphorylation
Cphy_2454	PWY-5269	cardiolipin biosynthesis II
Cphy_2454	PWY-5668	cardiolipin biosynthesis I
Cphy_2456	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Cphy_2456	PWY-2201	folate transformations I
Cphy_2456	PWY-3841	folate transformations II
Cphy_2456	PWY-5030	L-histidine degradation III
Cphy_2456	PWY-5497	purine nucleobases degradation II (anaerobic)
Cphy_2456	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Cphy_2473	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphy_2473	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphy_2475	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphy_2475	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphy_2483	PWY-6898	thiamin salvage III
Cphy_2483	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Cphy_2483	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Cphy_2484	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cphy_2484	PWY-5723	Rubisco shunt
Cphy_2494	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphy_2494	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphy_2496	PWY-622	starch biosynthesis
Cphy_2509	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Cphy_2509	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cphy_2509	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Cphy_2511	PWY-6891	thiazole biosynthesis II (Bacillus)
Cphy_2511	PWY-6892	thiazole biosynthesis I (E. coli)
Cphy_2511	PWY-7560	methylerythritol phosphate pathway II
Cphy_2525	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cphy_2531	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cphy_2531	PWY-6416	quinate degradation II
Cphy_2531	PWY-6707	gallate biosynthesis
Cphy_2532	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cphy_2538	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cphy_2538	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cphy_2538	PWY-6164	3-dehydroquinate biosynthesis I
Cphy_2539	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
Cphy_2540	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cphy_2546	PWY-5381	pyridine nucleotide cycling (plants)
Cphy_2546	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Cphy_2560	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cphy_2560	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cphy_2572	PWY-6902	chitin degradation II
Cphy_2582	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cphy_2582	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cphy_2587	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cphy_2587	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cphy_2591	PWY-7181	pyrimidine deoxyribonucleosides degradation
Cphy_2592	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cphy_2592	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cphy_2592	PWY-6164	3-dehydroquinate biosynthesis I
Cphy_2620	PWY-7560	methylerythritol phosphate pathway II
Cphy_2622	PWY-7560	methylerythritol phosphate pathway II
Cphy_2639	PWY-5437	L-threonine degradation I
Cphy_2639	PWY-7013	L-1,2-propanediol degradation
Cphy_2640	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cphy_2640	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cphy_2640	PWY-6268	adenosylcobalamin salvage from cobalamin
Cphy_2640	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cphy_2651	PWY-1622	formaldehyde assimilation I (serine pathway)
Cphy_2651	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphy_2659	PWY-2941	L-lysine biosynthesis II
Cphy_2659	PWY-2942	L-lysine biosynthesis III
Cphy_2659	PWY-5097	L-lysine biosynthesis VI
Cphy_2677	PWY-6823	molybdenum cofactor biosynthesis
Cphy_2714	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cphy_2738	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Cphy_2743	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
Cphy_2743	PWY-7248	pectin degradation III
Cphy_2750	PWY-5686	UMP biosynthesis
Cphy_2752	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Cphy_2752	PWY-2161	folate polyglutamylation
Cphy_2752	PWY-2201	folate transformations I
Cphy_2752	PWY-3841	folate transformations II
Cphy_2760	PWY-5344	L-homocysteine biosynthesis
Cphy_2760	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Cphy_2764	PWY-2161	folate polyglutamylation
Cphy_2770	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Cphy_2770	PWY-6167	flavin biosynthesis II (archaea)
Cphy_2770	PWY-6168	flavin biosynthesis III (fungi)
Cphy_2779	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Cphy_2779	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Cphy_2823	PWY-5480	pyruvate fermentation to ethanol I
Cphy_2823	PWY-5485	pyruvate fermentation to acetate IV
Cphy_2823	PWY-5493	reductive monocarboxylic acid cycle
Cphy_2845	PWY-5199	factor 420 polyglutamylation
Cphy_2858	PWY-7199	pyrimidine deoxyribonucleosides salvage
Cphy_2864	PWY-1281	sulfoacetaldehyde degradation I
Cphy_2864	PWY-5482	pyruvate fermentation to acetate II
Cphy_2864	PWY-5485	pyruvate fermentation to acetate IV
Cphy_2864	PWY-5497	purine nucleobases degradation II (anaerobic)
Cphy_2864	PWY-6637	sulfolactate degradation II
Cphy_2868	PWY-1042	glycolysis IV (plant cytosol)
Cphy_2868	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cphy_2868	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphy_2868	PWY-5723	Rubisco shunt
Cphy_2868	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cphy_2868	PWY-6886	1-butanol autotrophic biosynthesis
Cphy_2868	PWY-6901	superpathway of glucose and xylose degradation
Cphy_2868	PWY-7003	glycerol degradation to butanol
Cphy_2868	PWY-7124	ethylene biosynthesis V (engineered)
Cphy_2868	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Cphy_2874	PWY-1042	glycolysis IV (plant cytosol)
Cphy_2874	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphy_2874	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cphy_2874	PWY-7003	glycerol degradation to butanol
Cphy_2875	PWY-1042	glycolysis IV (plant cytosol)
Cphy_2875	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphy_2875	PWY-6886	1-butanol autotrophic biosynthesis
Cphy_2875	PWY-6901	superpathway of glucose and xylose degradation
Cphy_2875	PWY-7003	glycerol degradation to butanol
Cphy_2876	PWY-1042	glycolysis IV (plant cytosol)
Cphy_2876	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphy_2876	PWY-6901	superpathway of glucose and xylose degradation
Cphy_2876	PWY-7003	glycerol degradation to butanol
Cphy_2888	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Cphy_2888	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Cphy_2900	PWY-1042	glycolysis IV (plant cytosol)
Cphy_2900	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cphy_2900	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphy_2900	PWY-5723	Rubisco shunt
Cphy_2900	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cphy_2900	PWY-6886	1-butanol autotrophic biosynthesis
Cphy_2900	PWY-6901	superpathway of glucose and xylose degradation
Cphy_2900	PWY-7003	glycerol degradation to butanol
Cphy_2900	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Cphy_2900	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cphy_2907	PWY-6823	molybdenum cofactor biosynthesis
Cphy_2907	PWY-6891	thiazole biosynthesis II (Bacillus)
Cphy_2907	PWY-6892	thiazole biosynthesis I (E. coli)
Cphy_2907	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Cphy_2914	PWY-3341	L-proline biosynthesis III
Cphy_2914	PWY-4981	L-proline biosynthesis II (from arginine)
Cphy_2914	PWY-6344	L-ornithine degradation II (Stickland reaction)
Cphy_2934	PWY-101	photosynthesis light reactions
Cphy_2934	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Cphy_3001	PWY-1042	glycolysis IV (plant cytosol)
Cphy_3001	PWY-1622	formaldehyde assimilation I (serine pathway)
Cphy_3001	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cphy_3001	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphy_3001	PWY-5723	Rubisco shunt
Cphy_3001	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cphy_3001	PWY-6886	1-butanol autotrophic biosynthesis
Cphy_3001	PWY-6901	superpathway of glucose and xylose degradation
Cphy_3001	PWY-7003	glycerol degradation to butanol
Cphy_3001	PWY-7124	ethylene biosynthesis V (engineered)
Cphy_3001	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Cphy_3006	PWY-4983	L-citrulline-nitric oxide cycle
Cphy_3006	PWY-4984	urea cycle
Cphy_3006	PWY-5	canavanine biosynthesis
Cphy_3006	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cphy_3006	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cphy_3010	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cphy_3020	PWY-5101	L-isoleucine biosynthesis II
Cphy_3020	PWY-5103	L-isoleucine biosynthesis III
Cphy_3020	PWY-5104	L-isoleucine biosynthesis IV
Cphy_3020	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cphy_3021	PWY-5101	L-isoleucine biosynthesis II
Cphy_3021	PWY-5103	L-isoleucine biosynthesis III
Cphy_3021	PWY-5104	L-isoleucine biosynthesis IV
Cphy_3021	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Cphy_3021	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Cphy_3021	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Cphy_3021	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cphy_3022	PWY-6986	alginate degradation
Cphy_3037	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cphy_3038	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cphy_3038	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cphy_3038	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphy_3038	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Cphy_3043	PWY-6123	inosine-5'-phosphate biosynthesis I
Cphy_3043	PWY-6124	inosine-5'-phosphate biosynthesis II
Cphy_3043	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cphy_3043	PWY-7234	inosine-5'-phosphate biosynthesis III
Cphy_3044	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cphy_3044	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cphy_3044	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cphy_3044	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cphy_3045	PWY-6123	inosine-5'-phosphate biosynthesis I
Cphy_3045	PWY-6124	inosine-5'-phosphate biosynthesis II
Cphy_3045	PWY-7234	inosine-5'-phosphate biosynthesis III
Cphy_3050	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphy_3050	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphy_3050	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphy_3051	PWY-6562	norspermidine biosynthesis
Cphy_3053	PWY-40	putrescine biosynthesis I
Cphy_3053	PWY-6305	putrescine biosynthesis IV
Cphy_3056	PWY-6527	stachyose degradation
Cphy_3071	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cphy_3072	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cphy_3081	PWY-6807	xyloglucan degradation II (exoglucanase)
Cphy_3083	PWY-1341	phenylacetate degradation II (anaerobic)
Cphy_3083	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
Cphy_3091	PWY-1341	phenylacetate degradation II (anaerobic)
Cphy_3091	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
Cphy_3093	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cphy_3110	PWY-2201	folate transformations I
Cphy_3110	PWY-3841	folate transformations II
Cphy_3113	PWY-723	alkylnitronates degradation
Cphy_3151	PWY-3341	L-proline biosynthesis III
Cphy_3151	PWY-4981	L-proline biosynthesis II (from arginine)
Cphy_3151	PWY-6344	L-ornithine degradation II (Stickland reaction)
Cphy_3160	PWY-6807	xyloglucan degradation II (exoglucanase)
Cphy_3171	PWY-6871	3-methylbutanol biosynthesis
Cphy_3205	PWY-5667	CDP-diacylglycerol biosynthesis I
Cphy_3205	PWY-5981	CDP-diacylglycerol biosynthesis III
Cphy_3207	PWY-6788	cellulose degradation II (fungi)
Cphy_3222	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cphy_3222	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cphy_3222	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cphy_3222	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cphy_3222	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphy_3222	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphy_3222	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cphy_3222	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Cphy_3223	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cphy_3223	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cphy_3223	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cphy_3223	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cphy_3223	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphy_3223	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphy_3223	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cphy_3223	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Cphy_3234	PWY-6167	flavin biosynthesis II (archaea)
Cphy_3239	PWY-6902	chitin degradation II
Cphy_3245	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Cphy_3245	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Cphy_3245	PWY-6897	thiamin salvage II
Cphy_3245	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Cphy_3245	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Cphy_3245	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Cphy_3245	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cphy_3274	PWY-1622	formaldehyde assimilation I (serine pathway)
Cphy_3274	PWY-181	photorespiration
Cphy_3274	PWY-2161	folate polyglutamylation
Cphy_3274	PWY-2201	folate transformations I
Cphy_3274	PWY-3661	glycine betaine degradation I
Cphy_3274	PWY-3661-1	glycine betaine degradation II (mammalian)
Cphy_3274	PWY-3841	folate transformations II
Cphy_3274	PWY-5497	purine nucleobases degradation II (anaerobic)
Cphy_3287	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Cphy_3287	PWY-6596	adenosine nucleotides degradation I
Cphy_3287	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cphy_3294	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cphy_3305	PWY-3221	dTDP-L-rhamnose biosynthesis II
Cphy_3305	PWY-6808	dTDP-D-forosamine biosynthesis
Cphy_3305	PWY-6942	dTDP-D-desosamine biosynthesis
Cphy_3305	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Cphy_3305	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Cphy_3305	PWY-6974	dTDP-L-olivose biosynthesis
Cphy_3305	PWY-6976	dTDP-L-mycarose biosynthesis
Cphy_3305	PWY-7104	dTDP-L-megosamine biosynthesis
Cphy_3305	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Cphy_3305	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Cphy_3305	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Cphy_3305	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Cphy_3305	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Cphy_3305	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Cphy_3305	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Cphy_3305	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Cphy_3311	PWY-2721	trehalose degradation III
Cphy_3311	PWY-2722	trehalose degradation IV
Cphy_3311	PWY-6317	galactose degradation I (Leloir pathway)
Cphy_3311	PWY-7459	kojibiose degradation
Cphy_3325	PWY-6936	seleno-amino acid biosynthesis
Cphy_3325	PWY-7274	D-cycloserine biosynthesis
Cphy_3326	PWY-7560	methylerythritol phosphate pathway II
Cphy_3345	PWY-1042	glycolysis IV (plant cytosol)
Cphy_3345	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cphy_3345	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphy_3345	PWY-6531	mannitol cycle
Cphy_3345	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cphy_3347	PWY-5101	L-isoleucine biosynthesis II
Cphy_3347	PWY-5103	L-isoleucine biosynthesis III
Cphy_3347	PWY-5104	L-isoleucine biosynthesis IV
Cphy_3347	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Cphy_3347	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Cphy_3347	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Cphy_3347	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cphy_3348	PWY-5101	L-isoleucine biosynthesis II
Cphy_3348	PWY-5103	L-isoleucine biosynthesis III
Cphy_3348	PWY-5104	L-isoleucine biosynthesis IV
Cphy_3348	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cphy_3351	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cphy_3351	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cphy_3351	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cphy_3358	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Cphy_3367	PWY-6788	cellulose degradation II (fungi)
Cphy_3374	PWY-381	nitrate reduction II (assimilatory)
Cphy_3374	PWY-5675	nitrate reduction V (assimilatory)
Cphy_3374	PWY-6549	L-glutamine biosynthesis III
Cphy_3374	PWY-6963	ammonia assimilation cycle I
Cphy_3374	PWY-6964	ammonia assimilation cycle II
Cphy_3377	PWY-3861	mannitol degradation II
Cphy_3377	PWY-3881	mannitol biosynthesis
Cphy_3377	PWY-5659	GDP-mannose biosynthesis
Cphy_3377	PWY-7456	mannan degradation
Cphy_3377	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Cphy_3390	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphy_3390	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphy_3391	PWY-4261	glycerol degradation I
Cphy_3414	PWY-6749	CMP-legionaminate biosynthesis I
Cphy_3419	PWY-4261	glycerol degradation I
Cphy_3421	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Cphy_3421	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cphy_3421	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Cphy_3426	PWY-5381	pyridine nucleotide cycling (plants)
Cphy_3426	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Cphy_3438	PWY-6700	queuosine biosynthesis
Cphy_3441	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cphy_3442	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cphy_3467	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cphy_3467	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cphy_3467	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cphy_3468	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cphy_3468	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Cphy_3469	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cphy_3469	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cphy_3469	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cphy_3471	PWY-6123	inosine-5'-phosphate biosynthesis I
Cphy_3471	PWY-7234	inosine-5'-phosphate biosynthesis III
Cphy_3481	PWY-2941	L-lysine biosynthesis II
Cphy_3481	PWY-2942	L-lysine biosynthesis III
Cphy_3481	PWY-5097	L-lysine biosynthesis VI
Cphy_3482	PWY-2941	L-lysine biosynthesis II
Cphy_3482	PWY-2942	L-lysine biosynthesis III
Cphy_3482	PWY-5097	L-lysine biosynthesis VI
Cphy_3502	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
Cphy_3503	PWY-3801	sucrose degradation II (sucrose synthase)
Cphy_3503	PWY-5054	sorbitol biosynthesis I
Cphy_3503	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Cphy_3503	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cphy_3503	PWY-5659	GDP-mannose biosynthesis
Cphy_3503	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cphy_3503	PWY-621	sucrose degradation III (sucrose invertase)
Cphy_3503	PWY-622	starch biosynthesis
Cphy_3503	PWY-6531	mannitol cycle
Cphy_3503	PWY-6981	chitin biosynthesis
Cphy_3503	PWY-7238	sucrose biosynthesis II
Cphy_3503	PWY-7347	sucrose biosynthesis III
Cphy_3503	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cphy_3504	PWY-3821	galactose degradation III
Cphy_3504	PWY-6317	galactose degradation I (Leloir pathway)
Cphy_3504	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Cphy_3504	PWY-6527	stachyose degradation
Cphy_3504	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Cphy_3504	PWY-7344	UDP-D-galactose biosynthesis
Cphy_3531	PWY-7205	CMP phosphorylation
Cphy_3542	PWY-6655	xanthan biosynthesis
Cphy_3542	PWY-6658	acetan biosynthesis
Cphy_3548	PWY-6871	3-methylbutanol biosynthesis
Cphy_3571	PWY-6902	chitin degradation II
Cphy_3581	PWY-6906	chitin derivatives degradation
Cphy_3581	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Cphy_3581	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Cphy_3582	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cphy_3582	PWY-6855	chitin degradation I (archaea)
Cphy_3582	PWY-6906	chitin derivatives degradation
Cphy_3600	PWY-2941	L-lysine biosynthesis II
Cphy_3600	PWY-2942	L-lysine biosynthesis III
Cphy_3600	PWY-5097	L-lysine biosynthesis VI
Cphy_3600	PWY-6559	spermidine biosynthesis II
Cphy_3600	PWY-6562	norspermidine biosynthesis
Cphy_3600	PWY-7153	grixazone biosynthesis
Cphy_3646	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cphy_3680	PWY-3221	dTDP-L-rhamnose biosynthesis II
Cphy_3680	PWY-6808	dTDP-D-forosamine biosynthesis
Cphy_3680	PWY-6942	dTDP-D-desosamine biosynthesis
Cphy_3680	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Cphy_3680	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Cphy_3680	PWY-6974	dTDP-L-olivose biosynthesis
Cphy_3680	PWY-6976	dTDP-L-mycarose biosynthesis
Cphy_3680	PWY-7104	dTDP-L-megosamine biosynthesis
Cphy_3680	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Cphy_3680	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Cphy_3680	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Cphy_3680	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Cphy_3680	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Cphy_3680	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Cphy_3680	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Cphy_3680	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Cphy_3681	PWY-3221	dTDP-L-rhamnose biosynthesis II
Cphy_3681	PWY-6808	dTDP-D-forosamine biosynthesis
Cphy_3681	PWY-6942	dTDP-D-desosamine biosynthesis
Cphy_3681	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Cphy_3681	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Cphy_3681	PWY-6974	dTDP-L-olivose biosynthesis
Cphy_3681	PWY-6976	dTDP-L-mycarose biosynthesis
Cphy_3681	PWY-7104	dTDP-L-megosamine biosynthesis
Cphy_3681	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Cphy_3681	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Cphy_3681	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Cphy_3681	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Cphy_3681	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Cphy_3681	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Cphy_3681	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Cphy_3681	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Cphy_3683	PWY-1042	glycolysis IV (plant cytosol)
Cphy_3683	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cphy_3683	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cphy_3683	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cphy_3683	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cphy_3706	PWY-7205	CMP phosphorylation
Cphy_3710	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cphy_3710	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cphy_3719	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Cphy_3727	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cphy_3727	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Cphy_3727	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cphy_3727	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cphy_3728	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cphy_3728	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cphy_3728	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cphy_3728	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cphy_3728	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphy_3728	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cphy_3728	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cphy_3728	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Cphy_3729	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Cphy_3729	PWY-6153	autoinducer AI-2 biosynthesis I
Cphy_3729	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
Cphy_3731	PWY-7310	D-glucosaminate degradation
Cphy_3736	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cphy_3738	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cphy_3749	PWY-6902	chitin degradation II
Cphy_3787	PWY-5667	CDP-diacylglycerol biosynthesis I
Cphy_3787	PWY-5981	CDP-diacylglycerol biosynthesis III
Cphy_3787	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
Cphy_3787	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Cphy_3790	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphy_3790	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphy_3791	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphy_3791	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphy_3793	PWY-7560	methylerythritol phosphate pathway II
Cphy_3797	PWY-1281	sulfoacetaldehyde degradation I
Cphy_3797	PWY-5482	pyruvate fermentation to acetate II
Cphy_3797	PWY-5485	pyruvate fermentation to acetate IV
Cphy_3797	PWY-5497	purine nucleobases degradation II (anaerobic)
Cphy_3797	PWY-6637	sulfolactate degradation II
Cphy_3800	PWY-1281	sulfoacetaldehyde degradation I
Cphy_3800	PWY-5482	pyruvate fermentation to acetate II
Cphy_3800	PWY-5485	pyruvate fermentation to acetate IV
Cphy_3800	PWY-5497	purine nucleobases degradation II (anaerobic)
Cphy_3800	PWY-6637	sulfolactate degradation II
Cphy_3809	PWY-0	putrescine degradation III
Cphy_3809	PWY-6117	spermine and spermidine degradation I
Cphy_3830	PWY-5101	L-isoleucine biosynthesis II
Cphy_3830	PWY-5103	L-isoleucine biosynthesis III
Cphy_3830	PWY-5104	L-isoleucine biosynthesis IV
Cphy_3830	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cphy_3836	PWY-5381	pyridine nucleotide cycling (plants)
Cphy_3847	PWY-5958	acridone alkaloid biosynthesis
Cphy_3847	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Cphy_3847	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Cphy_3848	PWY-5958	acridone alkaloid biosynthesis
Cphy_3848	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Cphy_3848	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Cphy_3853	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cphy_3853	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Cphy_3855	PWY-6749	CMP-legionaminate biosynthesis I
Cphy_3862	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cphy_3874	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Cphy_3874	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Cphy_3879	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cphy_3879	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cphy_3880	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cphy_3901	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Cphy_3901	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Cphy_3915	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cphy_3925	PWY-3162	L-tryptophan degradation V (side chain pathway)
Cphy_3925	PWY-5057	L-valine degradation II
Cphy_3925	PWY-5076	L-leucine degradation III
Cphy_3925	PWY-5078	L-isoleucine degradation II
Cphy_3925	PWY-5079	L-phenylalanine degradation III
Cphy_3925	PWY-5082	L-methionine degradation III
Cphy_3925	PWY-5162	2-oxopentenoate degradation
Cphy_3925	PWY-5436	L-threonine degradation IV
Cphy_3925	PWY-5480	pyruvate fermentation to ethanol I
Cphy_3925	PWY-5486	pyruvate fermentation to ethanol II
Cphy_3925	PWY-5751	phenylethanol biosynthesis
Cphy_3925	PWY-6028	acetoin degradation
Cphy_3925	PWY-6313	serotonin degradation
Cphy_3925	PWY-6333	acetaldehyde biosynthesis I
Cphy_3925	PWY-6342	noradrenaline and adrenaline degradation
Cphy_3925	PWY-6587	pyruvate fermentation to ethanol III
Cphy_3925	PWY-6802	salidroside biosynthesis
Cphy_3925	PWY-6871	3-methylbutanol biosynthesis
Cphy_3925	PWY-7013	L-1,2-propanediol degradation
Cphy_3925	PWY-7085	triethylamine degradation
Cphy_3925	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cphy_3925	PWY-7118	chitin degradation to ethanol
Cphy_3925	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Cphy_3925	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Cphy_3925	PWY-7557	dehydrodiconiferyl alcohol degradation
