        dnaA    1832 ..    1869 + -17.3   -4.4267   TTACTAGTCTCTAAA   TAAAACTGCCTCCCA GAAAACAG TGGGAGGCAGTTTTA    TTTTGCCTTTTCGCA 100 46
        dnaN    3595 ..    3614 +  -4.2  -3.28712   ATAAAAGCGAAAACT            GCTGGTGAG AGG CTC-CCTGC            TTCTCACCAAAGACA  50 37
        recF NONE
 cpfrc_00004 NONE
        gyrB    7789 ..    7801 +  -4.7  -3.77789   ATATGCCTTTTTAAG                CGCCG GAA CGTCG                ATTTTTTCTGCGTTA  58 203
        gyrA NONE
 cpfrc_00010   12340 ..   12364 + -18.7  -5.22006   ATGCTCCACAGACAA          GGACCCAAGCT TTA AGCTTGGGTCC          TTTTTGTTGTAATGA 100 376
 cpfrc_00011   13301 ..   13321 +  -2.5  -3.53419   GCGCTGGGGTTTTTC            TGGGCTTAT TGA ACAATCCCA            TATTTAGTGTGTGAT  47 115
 cpfrc_00012   14102 ..   14139 + -15.8  -4.00042   ATCTTATCTAAGCAA   GGACAATGAGACTCTT GGTAAA AGGGGTCTCATTGTCC    TTATTTAATAGGAAG 100 73
 cpfrc_00013 NONE
 cpfrc_00014 NONE
 cpfrc_00015 NONE
 cpfrc_00016   17572 ..   17606 + -17.2  -4.11039   TCGATAAGCAAAAAA     CACCGCCTCTTCCTGA ATC TCGCGGAGAGGCGGTG     TTGTTTACTTGGTGT 100 54
        ppiA   18911 ..   18949 + -17.7  -4.68124   AAACGCTTCACGCAT  CCCCAAGTA-TCGCGACCA CTA TGG-CGCGAGTACTTGGGG  TTTTCTGTATGTTCC 100 40
 cpfrc_00019   19745 ..   19782 +  -6.3  -4.92314   ACTGTTAAAACAGTT   CAGTGCTGTGGGATCGT TTGC GTGATCTTGCAGCACTA    TTTTTATGCGTTGGT  83 42
 cpfrc_00020   19985 ..   19997 +  -7.7  -2.71483   TATCCACAAGAATTA                TCCAC ACT GTGGA                TAATTACACGAGTGT  58 156
 cpfrc_00022   21153 ..   21171 +  -4.4  -3.12253   CAAGAACTACAGAAC             CCACGCGG GCA CCGCGTAA             TCCTTTATCTTGGTG  47 160
 cpfrc_00027   22597 ..   22626 + -10.1  -4.86029   TTACATAGCTCTTAA       GTGGTCTCTCA CAGAAGCA TGAGGGACCAC        TTTTATATTATTTGT 100 33
         pld   25263 ..   25289 +  -8.6  -3.37796   ATTTTTCATAACAAT         CAGGTGGTCGGC GTA GCGGACAGCCTG         TTGTAGATCGTGCAG  64 252
        fagD   29140 ..   29177 + -24.5  -3.79113   ATATCGCTAGCTAAT   TAAAGGAAGCCACAGAG TTCT CTCTGTGGCTTCCTTTA    TTATTCTGCGAGACT 100 49
 cpfrc_00050   48369 ..   48416 + -14.3  -4.40804   TCCTCACTACTGAAA GCCCCCTGGCAGTTGG--ACTGA GAAA TCAGGAACCAACTGGCAGGGGGC TTTTGTGGGCTGGTG 100 51
 cpfrc_00055   54591 ..   54623 + -19.3  -5.59655   CTGAAGATCTGTAAA      CGGGAGAGCACTCAT AGG ATGAATGCTCTCCCG      TTTTTTATTCGTTTG 100 43
 cpfrc_00056   55853 ..   55886 +  -3.7  -3.02144   GCAATCCAAGTGTGG     GTAGCGCGCGTGCGGC ACC GCTGATCGCTC-CTAC     TATTGCGGAGCCTCG  45 473
        bioB NONE
 cpfrc_00063   61028 ..   61039 +  -7.2  -2.57564   AGCAGCTAAACGCGG                GCGC TTGG GCGC                 GTTGTGCGGCGGTGG  56 68
         amn NONE
 cpfrc_00066   64622 ..   64638 +  -9.4  -4.07618   TTGCTAAAAATTTTT              GGGTCC TTAAC GGACCC              TTTAATTGTTCAACG  78 198
 cpfrc_00067   65940 ..   65967 +  -6.3  -4.32607   TCGACGGCAACACGT        ACCCCTG-GGAT ATCTC ATCCTCAGGGGG        TTTGTTGCGTTTTAG  74 41
 cpfrc_00071 NONE
         gca   70533 ..   70568 +  -4.1  -4.20516   GCGCGGGCGTTATCA    AGATGAG-TGGGGATC ACTCG GATCTCCAACTTATCC    TTTGTTCCGTGGGGC  60 127
        piuB   73577 ..   73595 +  -5.3  -3.25714   AGCTAAAGCTTCGGA             CGTATGC CATAA GCATATG             TATTCATAGTTTTAT  52 35
 cpfrc_00075   74724 ..   74751 +  -4.9  -4.03234   CTGAGGGGCTATAAG        GCTTCAAGG TGCCATTTTC CCTTGGAGC         TTTGTCTGCCAGAAG  62 41
 cpfrc_00076   76494 ..   76508 +  -2.8  -3.35746   TTGAAGGCTAGCTGA               GCTTTA TAC TTAAGC               TTGGTGTAATTTAAT  47 26
       marR1 NONE
 cpfrc_00078 NONE
 cpfrc_00079   78529 ..   78547 +  -4.4  -3.11634   GCAAAGTAGCGTACG             GGCTCGGG TGG CGCGAGGC             TTACCTCATGTGGGA  47 392
 cpfrc_00082   80836 ..   80846 +  -6.8  -2.65993   AGACAACTGACGGGG                 CCTG GCG CAGG                 TGCTATACATATCGT  53 69
 cpfrc_00083 NONE
 cpfrc_00084   83333 ..   83347 +  -4.9   -3.7347   CTTTTTTAGTCTTTC               CGGTG GCTAA CGCCG               TTGTTGGGTCTTCCG  57 67
 cpfrc_00086 NONE
        tagA NONE
 cpfrc_00088   88094 ..   88104 +  -5.4   -2.9675   GGTTATTACTCCGCG                 CGAT CAG ATCG                 TCTAATTGTACGGTG  51 10
 cpfrc_00089   88506 ..   88520 +  -2.1  -3.90112   ATGGTTTCTGCAACA              G-GCAC TGCA GTGCGC               TTTGCTTAAAACCAC  52 2
 cpfrc_00090 NONE
 cpfrc_00091 NONE
 cpfrc_00092   90294 ..   90314 +  -3.9  -4.93365   CAGAAGCTCGGGAAA            GACTTACGC GGG GCATTAGTC            TTTTTGATTCTCCGA  74 372
 cpfrc_00093   91516 ..   91528 +  -9.1  -4.57073   GGCGGCTCCGGTGGC                CGTGG TCT CCACG                TTTTTAGGGCGAGTA  89 217
 cpfrc_00098 NONE
 cpfrc_00099 NONE
 cpfrc_00100   98826 ..   98841 +  -2.5  -3.60475   TCTCTGTGGTGATCT              GAGCT AGATCA GGCTC               TTTGCCCTGCGAGTT  47 107
 cpfrc_00106 NONE
 cpfrc_00107  107843 ..  107875 +  -2.5  -2.64616   ATCGGCTAAAAATCG      CTACGCTGGGCACTG TGA TACAGCGCAGCGGAG      TGATCTGGATAAGCG  39 32
 cpfrc_00108 NONE
 cpfrc_00109  109576 ..  109588 +  -4.8  -2.55015   ATAAACAGACGCAAG                TCGG GGACG CCGA                TGCGTTGCATAGCAT  43 387
 cpfrc_00111 NONE
 cpfrc_00112  111377 ..  111387 +  -5.4  -2.79641   AAGTGGCAGTTGGTA                 GTGA TTT TCAC                 TCATATGTTGTGATT  49 58
 cpfrc_00113 NONE
 cpfrc_00114  112765 ..  112781 +  -2.9   -3.1319   TCTTGTAGCTTCTCC              TCGTCGT GCG GCGGTGA              TTCGATGAGTTTTGC  45 1
 cpfrc_00115  113723 ..  113739 +  -5.1  -4.54727   ACTGATTATCTGCAG              TTCGATG TGG CAACGAA              TTTTCATTTAGCAAG  73 84
 cpfrc_00116  114786 ..  114817 + -11.7  -3.35197   GGCTAATCCAAAAAA      TACTTCCCAGTGG TATCTT CTGCTGGGAAGTA       TTGCTATGTATCCAC  82 35
 cpfrc_00117  115961 ..  116001 +  -3.4  -5.31059   ACGCAGGGGCATGGC TAGGT-AG-TCGCCTAGTTC GGT GAACTCGGCGATCTCATCCA TTTTTTGCTTCATCT  84 429
 cpfrc_00120  118870 ..  118895 +  -2.5  -3.40775   TGTGGCCGAGATTGT         TCCG-CGTTTGC TTA GCAACCGGCCGA         TATTTAGCTCGCCCT  45 241
 cpfrc_00123  123250 ..  123282 +    -5  -3.44229   TGACGTTAAAATCAC     TAAATCGTTCC-CAA GGGT TTGAGGGACGAGTTA      TTGTAATGATGAGCT  52 90
        glcT NONE
        nagE NONE
        nagE  126348 ..  126392 +  -7.4  -3.86653   CAGATAAAAAGAATT TTAATCCTCTGC-ACAA-TCGC ATT GCGGCTTATGGCAGGGGATTAA TTCTATTTGGTGGAT  69 47
 cpfrc_00127  127320 ..  127343 +   -11  -5.24796   ACACGCCAATTTTTA          TCCCCCCTAA TCTT TTTGGGGGGA           TTTTTATTGTCTAAA 100 56
         nor  129996 ..  130024 + -15.4  -4.63044   GGCGCACGATTAAAG        CCCCAGCTCATG GCATG TATGAGCTGGGG        TTTCTTTGTGTGCCT 100 187
 cpfrc_00131  132491 ..  132503 +  -4.8  -3.25191   TGCATTATTTGGATC                TGGC AGTAG GCCA                CTTTTGTGGGCTTGG  50 17
        pdxS NONE
        pdxT  134459 ..  134471 +  -6.9  -2.72344   GAGATGCGCGCGACT                GCCGC ATC GTGGC                TGCTTACCCGTGACG  52 497
 cpfrc_00135  136133 ..  136157 + -12.9  -4.55625   AGAGATGGGTGATAA          GGTCGGTATCT CTT GGATACCGGCC          TTTTGTCATATTGAT 100 168
       mmpL2 NONE
         tgt NONE
        gltX NONE
 cpfrc_00139  142645 ..  142684 + -13.6  -4.37886   AGCAGCAATCTGATT  CGG-GGAGTCGGTCACGTC AAA GACGCGGCCGACTTCGTCG  TTTTCTAGCGGCTCA 100 57
 cpfrc_00143  146811 ..  146840 + -16.6  -3.35679   AGGGATGTATCCTCA       CATAGGGGTAGG TGTGTT CCTACCCCTATG        TTGTGGATAACAAAA 100 39
 cpfrc_00144 NONE
        dnaX  149990 ..  150006 +  -5.1  -3.66356   TCTACTTGCAGAGCA              GCTGG GTGCGCG CCAGC              TTTAGGCTTCCCCAT  59 4
 cpfrc_00146  150454 ..  150485 + -10.1  -3.66742   CATTAGTTTTAAGTA      CCAGCTCGTCCGA GTTTCG TTGGCCGGGCTGG       TCTTCTTTGTATGCC  79 44
        recR  151289 ..  151305 +  -4.4  -4.12188   GTTGATAGTAGCGTC             CAGGTGC GCAG GC-CCTG              TTTTACAGATAATCC  62 111
         faa  156756 ..  156791 + -16.2  -4.57837   GGTAATACGTCATAA    GAGGTGGTCACCGG GTATATGG CCGGCGACCACCTC     TTTTTAAGAGCCTCT 100 76
 cpfrc_00161  164266 ..  164287 + -15.9  -5.27938   TGAAATCAGCTGGTA           CCGAGGGTC ATGG GACCCTCGG            TTTTTGTTTGCGGGT 100 59
        deoD NONE
 cpfrc_00163  166615 ..  166644 +  -2.1  -3.08349   GCTGAACGCGCACGC       GGCGTTTATGTGGC GTA GTAAC-TAACCGCC       TCTTCAGCATTATTT  42 8
        deoC NONE
        pmmC  169059 ..  169088 + -11.5  -4.57073   AAAGTGTGCTGGTTG       CT-GGCCCTCGCTA TTT TGGCGAGGGCTTAG       TTTTTCAAGGGGGTA 100 40
 cpfrc_00166  171199 ..  171238 + -15.2  -3.29739   AAAAACATAACTTAC  GTAGAAAGACCTCCCTTG ATTC TGAGGGAGGTCTTTTTGC   TTGCTATACATTAGG 100 43
 cpfrc_00167  173990 ..  174003 +  -4.5  -3.05022   GTAAAGGGCACTGAT               GAGCC TGTA GGTTC                TGTATCTGTCGGCGA  49 53
 cpfrc_00168  175157 ..  175190 + -16.2  -4.15632   TTAACTAGCATTTAA     TAAGGCGCTATCCA CATTGT TGGGTAGCGCCTTA      TTTGTGTGTCGTCGT 100 56
 cpfrc_00169  176599 ..  176621 +  -5.5  -3.06302   CCCAGCACGGCATAG          CCCAGCG-CG AAAG CGACGATGGG           TTCCGTAACCGTCAT  50 150
        lysC  178922 ..  178948 + -15.2   -4.9725   ATGCTTTGTAAGAGA         CCCCTTGCGTAT GTG GTGCGCAAGGGG         TTTTTATGTCCCCAT 100 57
 cpfrc_00172  182518 ..  182544 + -18.8  -4.20696   CCCCGTCCTGTCCAA         GGAGGCGAAGGG AAA CCTTTCGCCTCC         TTTTGGCGTTGCTAG 100 67
         asd  183780 ..  183821 + -15.9  -3.48884   AAGGCGTAATTTCTG CAGGCGCGGTACTTCCTCG TATT CAAGGAGGTGCCGCGTTTG  TGTATTTATTTAGGC 100 43
        katA  186100 ..  186144 +   -26  -5.37593   ATTTAAGCTTTACGA CGCCTACCCCTTCGAGCTTC CCTGT GAAGTTTGAAGGGGTAGGCG TTTTTTGGTTTGGGA 100 50
 cpfrc_00176  187709 ..  187720 +  -4.4  -3.87869   TCCTTACATTGACCA                TACG ATGT CGTA                 TTTCTCGGAGGTTAA  57 290
 cpfrc_00177 NONE
 cpfrc_00178  190092 ..  190106 +  -3.5  -2.82623   ACTTCGTCGCCAATC              GC-GGC GAAT GCCAGC               TCGTTGTCCGGCGAA  43 140
 cpfrc_00191  204439 ..  204477 + -12.5  -3.06762   TTTTTCTGTGAATCA  AG-CGCGCCGGTAAGGGGT AGC ACCTCT-ACCGGCGCGACG  CTTTCTATAATCTCT  81 41
 cpfrc_00199  212103 ..  212132 + -13.7  -3.22668   CTAGGTTGTATTCAG       GCTGCTTGGTAAGG CTA CCT-GCCAAGCAGC       TGTTGTAGCAGGTTT  88 37
        whcA  215084 ..  215099 +  -6.2  -2.65354   GTGAATCCCTTGCGT              CGATAA GCCC TTATCG               TGGGTTTGCAGTAGC  51 80
 cpfrc_00202 NONE
 cpfrc_00203  215771 ..  215801 +  -5.4  -3.74224   GGTTCTCTATGCAAA      CG-GACCCTGCAA AACTAA TGGCGGGGTCTCG       TTTAAGTAGTTTGGC  59 52
 cpfrc_00204  216674 ..  216723 + -27.3  -3.85698   AGTTGCCTTCAATAA AGGCCTGTGGCCCCGGTTCTC ATATGAGG GGGAACCGGGGCCACAGGCCC TTTATAGGGAAAGCG 100 40
         nth NONE
 cpfrc_00208 NONE
 cpfrc_00209  220256 ..  220268 + -10.5  -2.97029   CAAGCTCTCAGGTAT                CGCGC CTA GCGCG                CTTTAGTTCATAGGA  72 56
 cpfrc_00210  221565 ..  221586 + -10.9  -3.15544   TGTGGGCGTTGGCCT           GTACCTCCG ACAG TGGAGGTAC            TTAGTCCCGCTGCCG  69 94
 cpfrc_00213  224200 ..  224212 +  -5.5  -4.13945   TTCAACCACTAGCTC                TGTGG CGA CCACG                TTTTCCACTCCCAGT  65 447
 cpfrc_00216 NONE
 cpfrc_00217 NONE
 cpfrc_00218  228422 ..  228434 +  -3.3  -2.78813   CGATTATGGAGAAAG                CGCGA TGA TCACG                GTTATTGCGATGGCA  43 18
 cpfrc_00219 NONE
 cpfrc_00220 NONE
 cpfrc_00221 NONE
 cpfrc_00222  230012 ..  230022 +  -6.8  -3.46068   GACTGCGCCACCTTT                 GTCC AAT GGAC                 TGTTTCCGTTGCCGC  58 117
        cspA  232801 ..  232837 + -18.1  -5.31275   CGCCTACAAGCTTTA    GTGCCTCTGGTGGTCAT AAG ATGACCGCCGGGGGTAC    TTTTTTATAATCGAG 100 64
        topA  235946 ..  235980 +   -16  -2.89191   TAAGAAATAGGTTAC     TGAAATTAGCCCCTTT GTA AGAGGGGCTAATTTTA     TATCTAGGCATGTAC 100 31
        holB  241212 ..  241251 + -12.4  -4.55118   TCGCAGGCGGCTCCA  CAAAATCCCAGCTAGA TTAACCTT TCTAGCTGGGATTTTC   TTTTGTATAGGCTTA 100 205
 cpfrc_00231  244413 ..  244439 + -17.4  -4.75372   GTTCTTAAACATATA         GTGCCTTCCTCG GAG TGAGGAAGGCAC         TTTTTGCTAGGTACT 100 52
 cpfrc_00238  252934 ..  252978 +   -13  -5.03994   AGAACTCATATGTGA TAACGCAAGCC--GGGCGCTGC ATA GCGGAGCTCAAGGCTTGCGTTA TTTTTGTGTGTAGGG 100 43
         lpd  254633 ..  254664 + -20.4  -3.65199   CCTCATAGCTTTAAA      CCCCAGGTAGAAAA ATTA TTTTCTACCTGGGG       TTTAGCTACGGGATT 100 43
        sdhC NONE
        sdhA NONE
        sdhB NONE
 cpfrc_00244  260562 ..  260599 + -22.3  -3.15579   CGACACCTCCACTCA   CAAAGGCCCCGATATTCC TCA GGAA-ATCGGGGCCTTTG   TTCATGCACGATTAG 100 47
 cpfrc_00245 NONE
 cpfrc_00246 NONE
 cpfrc_00247  263403 ..  263419 +    -3  -3.65036   GGAGGAAAGTACCTG             CGAG-TG CGCC CAGCTCG              TTATCCTTTCCTTCG  51 387
        murB  270753 ..  270765 +  -5.5  -2.70932   GGGTCAAGAGCTGCG                CCTTC ATT GAGGG                TGATTGCGGCGACAA  47 286
        mshA NONE
        gpmA  274770 ..  274790 +  -9.1  -3.92324   AGGTTACGATGGTGG            GCTAGTGAA CGT TTTACTAGC            TTTCGTATTGGGCGC  76 42
       tcsS2 NONE
       tcsR2  276773 ..  276789 +  -2.2  -3.50393   AAATACTTGAGGGAA              CGCC GTTGCTTCG GGCG              TTATCTCGAGTACGA  47 90
 cpfrc_00261 NONE
 cpfrc_00262  279761 ..  279791 + -15.5  -3.41195   AGAGAGGCTGTTCAA      GGGCCGGCGG-AGA GTAA TCTTCCGCTGGCCC       TTCGCTTTTGCTGTT 100 48
        proC  280643 ..  280692 + -18.1  -5.07486   GAGCTTGGGTAATTT GTTAAAAGCTAAAGGGGTAGAAG AAAA CTTCTACCCCTTTAGCTTTCCCC TTTTTATTGAACCTG 100 29
 cpfrc_00264  281133 ..  281182 +   -18  -4.88736   GCATCTTTAGAGCTT TACCGAGGGGCAGTTCCCACCAG TATTT CTGG-GGTGACTGCCCCTCGTTA TTTTTGTGACTCATG 100 41
 cpfrc_00265  281539 ..  281562 + -19.6  -4.81212   TAAATAAAGCATTCA          CCGCCCAGGG ATTA CCCTGGGCGG           TTTTGTTATGGTGGA 100 34
 cpfrc_00266 NONE
 cpfrc_00267  283619 ..  283632 +  -8.1  -3.46068   CGCCGACCAGTCTTC               CGGTG AAAA CACCG                TCTTTGACTTCAGCG  64 333
 cpfrc_00269  284726 ..  284738 +  -4.8  -3.18264   TTGTGACTTCCTTAA                CGCT TGACT AGCG                TTGATGCATCAGAGG  50 52
        hemA NONE
        hemC  287167 ..  287184 +  -3.3  -5.06414   CGAGTCAAGTAGCCT             ACGGCAG TATT CTGCTGG              TTTTTATTAAACGCC  75 73
        hemD NONE
        hemB NONE
 cpfrc_00274 NONE
 cpfrc_00275  293372 ..  293397 + -14.1  -3.33162   AATGGAACGATAGAA         CCCCATCAATC AAAT GGTTGATGGGG          TTCTCGCCTAAAATA  93 70
        hemE NONE
        hemY  296059 ..  296071 +  -2.6  -3.15427   TTAGTGCTGAGGCGA                CTGC GGGAA GCGG                TTGGTCCGCGGTGTT  42 124
        hemL NONE
 cpfrc_00280 NONE
        ccsX NONE
        ccdA NONE
       ccsB1  301949 ..  301963 +    -5  -4.13767   CAGTGCCGCGAGGTG               GTAGGT GCT ATCTAC               TTTTACCGTGGCAGA  65 131
       ccsA1  306788 ..  306825 + -15.7   -3.4072   GGGGCATGAAAAAGA   CGCTGTGCTTTTATTCC AAGG GGAATCTAAGCACAGCG    TTGTCATAACAACTG 100 80
 cpfrc_00290  308016 ..  308026 +  -2.4  -4.57073   CGCCGAGTCCACGGT                 ACCC ATA GGGA                 TTTTTCCCGCCGGTA  65 469
        menC NONE
        menD NONE
 cpfrc_00297 NONE
        pimB NONE
        ubiE  317685 ..  317706 +  -7.3   -2.7263   CAGATGGGATGGACG           GCGTGCTCGT TAA GC-AGCACGC           ATTTAGCCAACTCAT  55 295
        ispB  321176 ..  321199 + -13.9   -4.6856   CCTGGCACCAACTAA          GCCCCAGCA GTAAAA TGCTGGGGC           TTTTTGGCGTCTTTA 100 195
        secE  322536 ..  322563 + -12.8  -3.10512   GTAAAGCTAAAAACA        TCCCGTCGGATCC CCT GGATC-GGCGGGA        TAATTTATTGCACGT  84 52
        nusG  323528 ..  323566 +  -7.5  -3.83998   AACTTTTCTCCCTTT  CCCCGCTATTTTGCCG TTATGTTT TGGCAGG-TAGCGGGG   TTTGCTGTAGCATGG  69 95
        rplK  324176 ..  324194 +  -5.3  -3.69395   CCATGGGCATCGTTG             TTGAGGA CTAAT TCCTCAG             TTATTCCGTGGTAGG  59 15
        rplA  325008 ..  325040 + -13.6  -5.43621   GCTTTAAGCACGGAA      TACCTCCTACCC CCACACAAC GGGTAGGAGGTA      TTTTTTGTGGTTTCT 100 58
 cpfrc_00307 NONE
 cpfrc_00308 NONE
 cpfrc_00309  327825 ..  327855 + -13.4  -4.24413   ACGCGGAATGATGTG       GGTCTTGAGGCTGT TGA ATGGCTTCAAGACC       TTATTTATTAATCGC 100 89
 cpfrc_00310  329176 ..  329187 +  -5.8  -2.87683   CACTTAGAGTTCACA                CTCC TTTC GGAG                 TATGTGCGCCCCTGT  52 241
        rplJ NONE
        rplL  330295 ..  330332 + -12.1  -4.87328   TTACTACAAACATCA   CTCCCACGGGAATAAGCA GGA TGCTT-TCCCGGTGGGAG   TTTTGTCTTTATATG 100 49
 cpfrc_00313 NONE
 cpfrc_00314 NONE
 cpfrc_00315 NONE
 cpfrc_00316  335109 ..  335130 +  -2.2  -4.34789   AGAAAGGAATGCCCG           CACCATGA TTTCGC TCGTGGAG            TTCTTTTCTGACTTA  61 18
 cpfrc_00317 NONE
 cpfrc_00318 NONE
 cpfrc_00319  339118 ..  339128 +  -5.4  -3.12606   TTGAAAAAACCGATT                 TGAC AAG GTCA                 TTCCGTGCTATCTAG  52 145
        rpoB  342730 ..  342768 +  -6.7  -2.73441   ACATCGCCTAATACA  TCAGGTCTGCATGGCAGC TAAA GCTGCTAAGCAGGCG-GA   ATTTAAAGCATCATC  53 30
        rpoC  346861 ..  346907 + -16.1  -4.34402   CCTAGCCTGATAAAA GCTCCCCAGAAGTT-GGTCTAA GAAA TTAGATCTGACTACTGGGGAGC TTTTGCTATGCGGGG 100 46
        cstS NONE
        cstA  349116 ..  349151 +  -2.7    -4.371   ATGAACTCATTGAAT    TATATTGCACACAAT TTTTTC ATTGTGCACAATATG     TTTTGATCTCCTAAA  62 201
 cpfrc_00324 NONE
 cpfrc_00325 NONE
 cpfrc_00326 NONE
 cpfrc_00327  352103 ..  352116 +  -3.7  -2.66274   CGCTACACAAATCCC               GCAGC CGGA GCAGC                CTTACTTATGAGGAA  42 1
 cpfrc_00328  353103 ..  353131 +    -3  -3.08679   AGCAGCAATCAGGTG        TCCACGGACTTC CATCA GCAGCCCGTGCA        TGTTGAATGACGAGC  43 42
 cpfrc_00331  356491 ..  356513 +  -4.9  -4.06148   AATGCGGAAGCGGCC           CCGGAAAAG AGCCC CTTTTTTGG           TTTGTCTAGGGTCTT  62 330
        rpsL NONE
        rpsG  357453 ..  357463 +  -5.4  -2.57294   CGCGCCTTCGCTCAC                 TACC GCT GGTA                 ATTCGTATGCGTATT  48 14
        fusA  360001 ..  360031 +  -2.5  -3.72576   CTGAGCCGGCCGTTA      CC-CTGTAAGATCC ATCT GGATCCTTCGGTGG       TTTGATAAAAACACC  50 147
         tuf  361414 ..  361441 +  -9.9   -5.5208   CTAGGCTTTTAAAAA        TCCGCTTTGGT CAATGT ACCAGGGCGGA         TTTTTTGTGTTATGG 100 62
 cpfrc_00336  362082 ..  362114 +  -4.2  -4.51777   GAGTTGCCTGCTATA     GCAACGATTATCCTT GGCT GAGGA-AGTCGGTGC      TTTTACTTATGCTCT  68 5
 cpfrc_00337 NONE
        rpsJ NONE
        rplC NONE
        rplD NONE
        rplW NONE
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP NONE
        rpmC NONE
        rpsQ  370753 ..  370800 + -18.8  -3.37474   TTCCTAGCTAATTAC AAAAACGCGGTTTGTATCTTGA GAAA TTGAGATACAAACCGCGTTTTC TTATGCGCTGTTCTG 100 59
        rplN NONE
        rplX NONE
        rplE  378705 ..  378739 + -22.4    -5.186   TTTAAAGCTAAGAAA     CAAAGTCACCCACTGG GAA TCAGTGGGTGACTTTG     TTTTTGTGTCTTTTG 100 78
        sdaC NONE
       sdaA1 NONE
 cpfrc_00365 NONE
       ansA1  383489 ..  383501 +  -3.4  -3.24747   ATTAAGACTTTTTCT                GCTT AATTA AAGC                TTCATGCTGTGAAAG  46 111
        phoN NONE
        rpsH NONE
        rplF NONE
        rplR NONE
        rpsE NONE
        rpmD NONE
        rplO  388095 ..  388131 + -19.6  -5.29445   TTAGTTCTCACTAAA   GCCGTACCTACT-CCGC TTTT GCGGTGGTAGGTACGGC    TTTTTCTTATTCCAA 100 58
 cpfrc_00374  388752 ..  388776 + -10.8  -5.16681   GGCGTTAATCCATTT          CCCTAGATGT GTAAA GCATCTAGGG          TTTTCTTATTTTTCG 100 33
        malE  390466 ..  390523 +  -9.2  -4.56775   AGCAAAAAGTAATCC CTGAGTATGAGTATGTGGGGCCCAGT CTGAGT ACTGGGCTTCACGTGTGCATAAGCAG TTTTTCACAACACAT  90 29
        malF NONE
        malG  392915 ..  392927 +  -4.7  -2.78463   GCACCAATAAAACAC                GAGGG CAT CCCGC                TGTGATGAGCACCGT  47 84
 cpfrc_00378  393941 ..  393973 +  -4.2  -2.93219   ATAAAGTCTCCTCAG     CAGTGGCAAAGAAGG TTGT CCT-CTTTGAAACTG      ATTTCTGGCGGTATT  47 234
 cpfrc_00379  395008 ..  395045 +  -2.7  -3.85542   CTATCGGAATGGATC   GCTCGGT-AGGTCTCAAT GGC ATTGAGAATGCGCCGGGC   TTGATTTTCTTGTAC  54 335
        secY NONE
         adk  399806 ..  399858 + -14.4  -5.25735   CTGATTGACTGCGAG CCGAGC-CTGACGCGTGACTATACAC CCG GTGTATAG-CGTTTGTCAGTGCTCGG TTTTTGCTTTTTTAA 100 44
        mapA NONE
        mapA  400836 ..  400846 +  -2.6  -4.35693   GTATTTCTTCTGTTA                 TAAA TAC TTTA                 TTATTTTGTAACTTT  62 128
        nanH  403243 ..  403275 +  -8.2  -4.90002   TAGTTGCTGAAAAAG      GGGGCGTGCGGAGC GGAAA GCAAGGCGCGCCCC      TTTTCTTGTCTCTTG  88 63
 cpfrc_00387  404153 ..  404184 + -16.7  -4.77567   TGGCTCATGGAAACA      GGCCACGG-CATCG CGAGA CGATGTCCGTGGCC      TTTTCTTGTAGGGGT 100 57
        infA  404640 ..  404650 +  -6.8   -4.8743   CCGCTATAAATAACT                 CGAC TTA GTCG                 TTTATTTCTTTTGAA  83 28
        rpsM NONE
        rpsK NONE
        rpsD  406215 ..  406233 +  -7.4  -3.27747   GCAAGAGCAGCTCAT             CGTCGAGT TCT ACTCGAAG             TAATTTTCTGTTCTC  62 4
        rpoA  407398 ..  407412 +  -2.8  -3.61398   TTCCGAGTAAGAAGC               CCAG TAGGGGC CTGG               TTCTTGCAACCAAGG  49 31
        rplQ  407985 ..  408019 + -12.3   -4.3467   CGCCTGGACATAAAA    CGTCCCTCATC-GC CGATAAGA GCAGATGAGGGACG     TTTTGCTATGGGGAT  95 57
        truA  409071 ..  409085 +  -5.6  -2.96984   CCGTCTAAGTAGATG               GCCCAT TTA AGGGGC               TGTCTAGTCAATTTC  51 52
 cpfrc_00395  410454 ..  410469 +  -3.3  -2.71765   CAGCATTAACGCCGC              TCTAC TAGCGT GTAGA               CTTCCTTTCGAGTCT  42 18
 cpfrc_00396  411376 ..  411401 +  -3.9  -3.12351   GTGCGATAGCGCCGC         TGCTACGTGTC CCGA GGCACTGAGCA          TTGGGTGTGGGGACG  45 433
 cpfrc_00399 NONE
 cpfrc_00400 NONE
 cpfrc_00401 NONE
 cpfrc_00402  419677 ..  419699 +  -6.2  -3.93782   CAGTGCACGATCGGG           TCACCACCGG CCG CCGTTCGTGA           TTTCCTCTTGAATAA  64 279
        rplM NONE
        rpsI  420741 ..  420783 + -14.1  -4.10566   TTAATCTTTTTTCGC TGGCTCAAGCCGCTTCACC TTTGT GGTGGGGCGGCTTTCGCCG TTTATGTACTCGTGT 100 37
        mrsA  422274 ..  422290 +  -2.1  -3.78022   GCAAAAATTTAATGT              TGGAACC GCT GGTCCCC              TTTCATACGTCTAAG  50 29
 cpfrc_00406  422670 ..  422685 +  -3.2  -2.74192   TGCATAGTAGGTGGG              GGCTAA TGGC TAAGCC               TGATCTTAGACAGTA  42 55
 cpfrc_00407 NONE
 cpfrc_00408 NONE
 cpfrc_00409  424121 ..  424145 + -15.1  -3.23452   CGTCGAGTATGAAAA          GAAGCCTCTCG GAG TGAGAGGCTTC          TTGCATTATGAGAGT 100 29
         alr NONE
 cpfrc_00412  426929 ..  426943 +  -7.2  -3.76373   AGTTTCTTAACCGCA               TCAATC GTT GATTGA               TTTGCGTATTACCAG  67 31
 cpfrc_00413  427455 ..  427472 +  -2.7  -3.65812   CTTCAGATTGGAGTC             TCGAAGCG CCG TGCT-CGA             TTATCTTGCGACGCA  51 283
 cpfrc_00414  429091 ..  429101 +  -6.8  -3.34589   ACGAGTTTATCCCCG                 CACG CCC CGTG                 TCTGTTTGCTATTAC  59 44
 cpfrc_00415  429818 ..  429859 + -29.1  -3.90425   ACTAGGTCTTTGTAA CAAGCACGCTTAAGAAGCG ACTA CGCTTCTTAAGCGTGCTTG  TTCTTGCTTTGGATA 100 108
 cpfrc_00416 NONE
 cpfrc_00417 NONE
         gcp  432114 ..  432140 +  -8.1  -2.61548   TAACTTTGTTGAGTG        CTGGCACT-TGC AGGG GTAGAGTGCCAG         TAGGTTGTACTCACA  58 63
       groES NONE
      groEL1  434181 ..  434215 + -10.7   -4.4261   TAGAAAATGCAAAGA     GTCCCGAGCGTTGGT TTTCT GTCCATGCTCGGGAC     TTTTGCTATTCACGG  91 38
 cpfrc_00421  434501 ..  434512 +  -5.8  -3.86015   CGTGCAATTGCCAAT                CCCA TAAC TGGG                 TTTGTGGAGCCGGTA  64 101
 cpfrc_00422  434729 ..  434757 +  -3.1  -4.40526   CGCTACCACTAAAGT        TGATAACTGAGGC TAT GTCCCAGGTATTA        TTTACTTTTTGTATC  62 115
        sigD NONE
 cpfrc_00424  436811 ..  436826 +  -4.6  -3.37188   GGGTTAGTCTAGGTA              GAGCGT GAAA ACGCCC               ATTTTTCGAATGCAT  52 516
        guaB NONE
 cpfrc_00428  439601 ..  439630 +   -15  -4.46926   TTCTTTCCCACATAA       CGCCGGTCTTCC TTTATT GGAGGGCCGGCG        TTTTATGGTGGCGTC 100 50
 cpfrc_00429 NONE
        guaA  443235 ..  443271 +   -11  -4.27474   AGTGGGAGTAATCGC   TGACTAATGGCTACCGG GTTG TCGGTAGCCATTGG-CG    TTTATTAATACGTTT  87 30
 cpfrc_00431  444134 ..  444146 +  -6.3  -3.54424   TCGATATCTCCGAAA                GAATC GTC GATTC                TTTCCGGAGCTCCCG  57 338
       tcsS3 NONE
       tcsR3  447064 ..  447089 +  -3.9  -3.54902   GTTGAGTGCCGTCTT         GCCACGAACCT GGAT AGGTTTGCCGC          TTGCTTGTTGAGTGG  51 263
 cpfrc_00436  448628 ..  448640 +  -6.3  -2.50816   GACGCCCACTGGAAA                GAATC GAC GATTC                CTTCCTACCTCCGCA  52 140
        mntA  455561 ..  455588 + -16.4  -2.59797   CCTAAACAACGAGCC        GTGAGGGCCTTC ATAT GAAGGTCCTCAC         CTGTCTTTCTAGAGA 100 59
        mntB NONE
        mntC NONE
        mntD NONE
        mntR  458705 ..  458721 +  -5.1  -2.74501   CGCCATACCTCATAG              GCAGC CACGGCA GCTGC              ATTTGAGAGATTCAT  47 87
        folD  460183 ..  460195 +  -9.1  -2.90227   TCGCTTACTGAGCAT                TGGCG TCG CGCCA                CTTTCGTGCTTGGGA  65 159
        htaA NONE
        hmuT NONE
        hmuU NONE
        hmuV  468614 ..  468651 +    -2  -4.26188   TTAGTAGTCATACTA   GGCAAGGTG-CCCTAAT CTTTA ATAAGGTATGCCTTGCC   TTTTAAATGTCTAAA  57 104
        htaC  469615 ..  469651 + -20.4   -4.0641   AAGCCGGGGGTAAGA    CATGTGAGGCGAAGAG AACGG TTCTTCGCCTCACATG    TTTGTCTAGATGGCG 100 51
 cpfrc_00462  475123 ..  475137 +  -4.2   -3.0169   GCTGCATCCGAGGCC               TGGGCA TTC TGCCAA               TCGTTTGTGGACATT  47 302
 cpfrc_00464  476593 ..  476609 +  -3.7  -4.14243   ATTAAAAGGTGGGGG              CTTCG GTACCTG CGAAG              TTTTCGAGTAGGATA  60 36
 cpfrc_00465  476877 ..  476902 + -10.4  -4.56358   TAATTTTTAGACTAT         GGCCTGTTGC TTTATT GCGGCAGGCC          TTTTGTCTACGTATG 100 54
        trpS  478087 ..  478116 + -10.1  -4.94972   CAAGTTGACAACGAT       CCGGCCC-AGAT GACTGAA ATCTCGGGCCGG       TTTTTGCTTCTCGTC 100 66
 cpfrc_00467  479664 ..  479689 +  -3.1  -4.56597   TGGTATCTAGGATCA         CCGCGGCGAGGC GAC GCC-CGTCGATG         TTTTTCGCCCCGACA  67 422
 cpfrc_00469  481963 ..  481974 +  -7.2  -3.53012   ATGCTCGACAAGCCA                GCGC AAGA GCGC                 TTTAGACGAGGAGAA  62 483
         upp NONE
        hth3  485484 ..  485496 +  -9.1  -3.15544   AACAATAGCTCTGAT                CGAGG CAT CCTCG                TTGCTGCCGCTGAGC  63 192
        amiA  488480 ..  488500 +  -3.4  -2.54523   GCAGGCTTGTCGTAT           GTCACATGA CGCG TCATGT-AC            TGCGTTAGACTATGG  42 90
        lpdA  490183 ..  490202 +  -2.1  -3.58801   CGGGGAAAGCTCTTG            TGCTGTT GTGAGA AACCGCA             TTTAGGCGCTTGTAT  47 244
         pyc  494186 ..  494198 +  -3.3  -3.04144   CCCATAGCGCCACCT                AGCTG CTG CAGCG                TATTCACAATCGCCG  43 298
 cpfrc_00484  500796 ..  500809 +  -6.7  -3.87627   GGGCGGTGCAGAGCG               CGCAA TTTG TTGCG                TATTTTGTCTGCCCG  66 71
 cpfrc_00485  503145 ..  503187 + -13.6  -2.60032   TCGGCACGTTCGTGG GCAAGGTTTAGGAAAGAATC GAC GATTCTTTCCTAAACACAGC AGTTTTTAAAGCAAC  84 15
        birA NONE
 cpfrc_00495  511915 ..  511933 +    -3  -3.77808   GGTATTGGGGATAGA             GGGGCC ACTAACA GCCCCC             TTCTCTTCTGCTCAC  51 27
        purK NONE
        purE NONE
 cpfrc_00498  514388 ..  514420 +  -4.2  -3.07895   AAAACCCCACAAAGC     CTAGGACGGAG-TCG CGTA CGAGTTTCTTCCTAG      TCTCTTGGGGCTGAG  47 227
        wbbL NONE
        manC  522818 ..  522846 +  -6.1  -3.88015   GGGGGGTGCGCAACA       TCTCTTTCGTGC GGGATA GCACGAA-GGGA        TTTGATCGTTGTATC  64 146
       whiB2  523531 ..  523562 +  -8.7  -3.81539   AGTTCCGTAGCGCAA      GGGTCTGCTAGGT GTATAA ACCTGGGAGGCCC       TTTAACTGTTTAAAT  73 41
 cpfrc_00509  524583 ..  524593 +  -4.6  -3.57144   TAAGCGTCTAGGAGG                 GCCT AAG GGGC                 TTTCCGACTGCCGGC  55 38
        pmmA  526164 ..  526208 + -10.7  -3.87694   TCTTGCCTAGTTTCT GGCTCCCAGGGGATGCACAG CTATGT CTG-GCTTTCCTCGGGAGCC TTTGCGTATTTTGTT  85 53
 cpfrc_00511 NONE
        manA  528499 ..  528525 + -16.6  -4.16279   GGAAGGCATAAGAAA         GGGGAACAGCTC AAA GAGCTGTCCCCC         TTTTAAAATCATCTA 100 51
 cpfrc_00515  530447 ..  530457 +  -6.8  -3.28924   GCTTTGGTGTATTAG                 GTGC GCG GCAC                 TTGTGAGAAGGAATA  59 186
        sahH NONE
         tmk  532605 ..  532617 +  -4.8  -2.87132   TCTGGAGCTCCTGGG                CGAG CAAAA CTCG                TATATAGGGGCGACG  47 93
        mtrA  533464 ..  533480 +  -2.9  -3.00731   GCGGCATCGCTGGTA              GTCATGA TGA TCTTGGC              CTTTGTCCTGGTTAG  43 136
        mtrB NONE
 cpfrc_00520 NONE
 cpfrc_00521  537429 ..  537443 +  -5.7  -3.65314   GCAAAATGGTTATGA               CCAGA TGTAC TCTGG               TTCTTGGAAGTTGAA  61 57
 cpfrc_00522  538232 ..  538267 + -10.6  -4.27211   AAACGAGATGACCTA    GAACCCGGATT-CCT CCAATAA AGGTGATCCGGGTTC    TTTAATTTGTTTCGC  85 60
       secA1  540913 ..  540948 + -16.2  -3.72576   AAAACCCGCTCTAGA    TAACCCGCAGGCTTCG CATT CGCAGTCTGCGGGTTG     TTTCGTCGAGAGGCA 100 43
 cpfrc_00525 NONE
 cpfrc_00526  542466 ..  542502 + -11.6  -5.18371   GTTTTTAGTTTTAAA   CCGTTGTGT-CGGTCCC TAAA GGGGCTGTGCGCAACGG    TTTTCTTTTGTGCCG 100 79
 cpfrc_00527 NONE
 cpfrc_00528  545273 ..  545283 +  -6.8  -2.60496   GCCCTTGCCCACTCC                 GGAC ACG GTCC                 CTGTTTCACGGAAGG  51 348
        sigH NONE
        rshA  549663 ..  549674 +  -7.2  -4.78764   GAGATACGAGCACGC                CCGC GTCC GCGG                 TTTTTCCTACGTTTG  83 286
 cpfrc_00535  550940 ..  550998 +   -14  -3.79909   CCCGTAATTATTAAA AACAAAAATAAGCATGAAGCTGGCAAGT TTT GCTTGCCAGCTTCATGCTTATGTGAGAC TTGTTACTACTTTGC 100 27
 cpfrc_00539 NONE
 cpfrc_00540 NONE
 cpfrc_00541 NONE
 cpfrc_00542 NONE
 cpfrc_00543 NONE
 cpfrc_00544 NONE
 cpfrc_00545 NONE
 cpfrc_00546  567227 ..  567241 +  -2.1  -3.64703   AATAGACGTTGTTTT              GCTCTG AAAG CAG-GC               TTTGAATCACAAAGA  50 159
 cpfrc_00548  568903 ..  568931 +  -6.6  -3.74251   GCTCCGCAGAACCTC       CGGTGGCGCGGCG GCGA CGCCATGCC-TCG        TTTAATGCGGCTGTG  62 440
 cpfrc_00550  571395 ..  571408 +  -2.4  -5.24129   ATCGGATTTAAAAAA               TTGG AATTGG CCAA                TTTTTTCTCCAGAAC  78 339
 cpfrc_00553  575672 ..  575691 +   -15  -4.13748   TACCATGTTTCGTTA            GCCCCCTC TTCG GAGGGGGC             TTTCGTGTTTTTCAG 100 239
 cpfrc_00554  576753 ..  576764 +  -2.2  -3.05816   TGATGATGATCTGAG                CCTG AATC TAGG                 TTGCCTAGGGAATAG  42 80
 cpfrc_00555 NONE
 cpfrc_00556  578328 ..  578370 + -29.4  -3.87075   AAAAGTAAGACAAAA CCACCGCCCCTAACGCTC ACACCTA GAGCGTTAGGGGCGGTGG TTTATCCCGAGTAGT 100 13
 cpfrc_00558 NONE
 cpfrc_00559 NONE
 cpfrc_00560 NONE
 cpfrc_00561  588574 ..  588589 +  -7.6  -3.79021   AAAGGGAAAGTGATT              GTGATC TTCG GATCAC               TTATGTCTTTGCTAT  68 219
 cpfrc_00562  589494 ..  589521 + -14.2  -4.23213   GCTACTAAAATGGAT        CCCCCGATTTGT AAAA GCGAATCGGGGG         TTTCTTGCCTCTCGA 100 172
 cpfrc_00567  597443 ..  597491 + -20.5  -2.98823   TACGCTATCTGTCAT TAAGGCCCTTATGGTTCTTTCCT TGT GGGATCGAACCATAAGGGCCTTG TCTGTGTGGCGGGCA 100 70
 cpfrc_00568  597730 ..  597752 +  -8.4  -3.14211   TATTTTCTCCTTATT           GCTTAGTGCA CAA TGCGCTGGGC           TTAGTCCGAAAAGGT  64 196
        ansP  599235 ..  599282 + -12.7   -4.3898   GGTTTGTTTGCGCTC TGGTGCCGGGCAGAGGC-GCTCT GTGA GGAGCTGCCGCTGCGCGGC-CCG TTTTATAAGAATGAT 100 41
        oadA NONE
        mmdA NONE
 cpfrc_00572 NONE
 cpfrc_00573 NONE
 cpfrc_00574  604533 ..  604569 + -18.2  -4.20696   AAAACAAAGCAATAA    GGCAGGTTTTGGCTGA AAGAA TCAGCTGAAACCTGCC    TTTTGGGCTTAATAC 100 41
        prfB  607582 ..  607592 +  -6.8  -4.20932   GCAATTTTATCGACG                 CCGA ATT TCGG                 TTTTCCCTGGATATT  71 69
        ftsE NONE
        ftsX  611644 ..  611669 + -15.5  -4.96848   GAATAAGAATGCTAG         CCTTCCGCACC TTCT GGTGTGGAAGG          TTTTTGTATGCACAA 100 62
 cpfrc_00582  612265 ..  612275 +  -5.4  -3.15544   GCAACAGAAGGATTT                 GAAG CTG CTTC                 TTGCTCGGAGTAGGA  52 85
 cpfrc_00583  613865 ..  613881 +  -2.2  -4.52703   TGTGTGCGTCGATAA              GCAAAC TTTGT GATTGC              TTTTGTAGTGCTTTC  63 89
 cpfrc_00585  615440 ..  615474 + -12.3  -3.38178   ATTTTGTTAAAAGAC    TGGGGATTGC-TAGCC AAGA GGTTAAGCAATCCCCG     TTCTGCCGTTCATTA  85 62
 cpfrc_00586 NONE
 cpfrc_00587 NONE
 cpfrc_00588  618294 ..  618334 + -14.1  -4.88388   TACCACTGACACTGG  CGCTGAAGCACCGTAGGAA TTT TTCCTGCGGTGCTTTGCTG  TTTTTATCGCCTTGT 100 32
 cpfrc_00595 NONE
        cspB  632665 ..  632708 + -15.7  -2.65547   TCCTAGGCACACAAG CAAAACCGACTATAAAG AAACGGATGC CTTTATAGTCGGTTTTG TGCATTTAGAAGTTT  95 35
 cpfrc_00599 NONE
 cpfrc_00600  635190 ..  635201 +  -5.8  -4.17089   TGCGGAAGTTTTTCC                GAGG TATC CCTC                 TTTTACACATTTGGA  69 102
 cpfrc_00601  636733 ..  636771 + -17.6  -3.53745   GCTTTGTCCCTCTGA  GGCTCCCGATTGCGGCA TATCTC TGCC-CGATCGGGAGCC   TTGCTTTAACATGTA 100 54
 cpfrc_00602  637802 ..  637814 +  -7.7  -2.78495   TTCTGCAGCGACCGT                TGGCT CGG AGCCA                TGCTGTTCATAGTCG  55 164
 cpfrc_00606  641467 ..  641488 +  -6.6  -3.74224   CTAGATTGCTCTAAC           TAGGTGTG TTAAAC CGCACCTA            TTTGGATGCTTTCCC  63 95
        gltA  643038 ..  643080 +  -9.1  -4.18401   AGCTGCATGTTGAGG CCGAGCGCGCGAATTCC CAGTAAAGT GGAATAAACGCGCTCGG TTTTCGCGTGTCTCG  80 75
 cpfrc_00608  643557 ..  643592 +   -17  -3.92602   TAGATGCTGAAAACA    CAAAACCGCGCTGTTT TAAG AGACAGCGCGGCTTTG     TTTATGGGGTATTAG 100 52
 cpfrc_00611 NONE
 cpfrc_00612  648140 ..  648164 +  -9.3   -5.7946   GAAATGCTGTGTAAA          GACGGGCTC CTATAGT GAGCCTGTC          TTTTTTTGTTGCCGG 100 207
 cpfrc_00613 NONE
 cpfrc_00614  650599 ..  650634 +   -17  -3.79906   GTTCGGGGTATCTGG    TGGTGTCCGGCGTTGA GTGA TCAGCGTCGGACACTA     TTATTGTCCGCATGG 100 125
 cpfrc_00615 NONE
 cpfrc_00616  651480 ..  651505 + -16.2  -3.43328   TGGGAAAATAGCTAA         GCGGCGACCT CGTACA AGGTCGCCGC          TTCATGTCTTTCCTA 100 139
        stsA NONE
        stsB NONE
        stsC NONE
        stsD  665895 ..  665920 +  -7.6  -4.74989   TGTATGCAATGACAC         GAGAGGCC CCCCAACCTT GGCCTCTC          TTTTATCTATTGTTT  85 282
 cpfrc_00629 NONE
        cobF  667741 ..  667776 + -12.7  -3.16039   GATTAAGCGGTGAGT    TCCTCTAGCTTGCGA CGAACA TCGGAAGCTGGAGGA     TTGGTCGCGGTGCTT  84 35
 cpfrc_00635  675655 ..  675683 +  -3.7  -4.11322   CACTCGCCAAGCCTA        CGACTCGGTGGGC GCC GGCCATCAACTCG        TCTTTTTCTAATTCA  60 279
 cpfrc_00637 NONE
 cpfrc_00638  677392 ..  677440 + -21.4   -3.2029   AATGTAATTAATTTA CAAGGCCCTATGCACTCTCTTTA CTAA TAAAGC-AGTGCATAGGGCCTTG TTCGCTGTATTAATT 100 34
 cpfrc_00640  681079 ..  681089 +  -4.6  -3.33037   AAGGGGATCATCGGT                 TCCC GTA GGGG                 TTCGTACTTTAAAGT  51 336
        pcrA  683811 ..  683839 + -18.9  -3.21726   TTTAGATCTAGAAAA        CCCCAGCGCTTGG GTG CCAAGGGCTGGGG        TTGGGTGTTCTCAGA 100 36
 cpfrc_00644 NONE
        purN NONE
        purH  688959 ..  688976 +  -4.1  -4.64766   GGCGTGCTCACCTAT             GCGTGAT TAGT ATCACCC              TTTTTAGGGTGTGAG  68 140
        gluA  689865 ..  689876 +  -5.8  -2.84002   ATCCTTTCCCATTAA                GCCT CTTG AGGC                 CTTATTCCCTCTTCT  52 26
        gluB  690827 ..  690839 +  -7.7  -2.63596   AGGAAGGCATAATCT                CATGG ACG CCATG                TGGTCTCAACTAGGG  58 60
        gluC NONE
        gluD NONE
 cpfrc_00651  693641 ..  693671 +    -7  -3.06796   CGGAGCCAGCGATTT      CTGCGGC-GATAT CGTGGA ATATTTGCCGCAG       TTGGGTACGCTGCGC  54 310
        rpmE NONE
        rpmF  697384 ..  697413 +  -7.9  -5.07275   CTCTTTGACCGCTTA       GGGCCGAC-TCC AAGTTCC GGAAGTCGGCTC       TTTTTGTATATATAA  90 56
       tcsR4 NONE
       tcsS4  699762 ..  699806 +  -7.1  -4.38154   CCCGTAAATAGAATC TGCTCACACAGGGCTTGGC CGAGAAC GTCAAGCCCTGTTGGCGTA TTTTGTCGCGACTAT  76 59
        pepD  701410 ..  701420 +  -6.8  -3.41569   AAGGAGTTATGAGCA                 GGCT CCT AGCC                 TCTTTCCCTCAATCG  59 50
        moaB  702303 ..  702352 + -32.5  -4.09822   TACGGGACACAATAA CTACAGAGAAGTGGGAGCCGACT TACT AGCCGGCTCCCACTTCTCTGTAG TTTGTCTACTCGCTT 100 250
        galU  705434 ..  705453 +  -2.1  -2.82516   AATATTCCGGCTCGC            TTTGGGC TTCCGC GCTCAGA             TATGGTGGTGAAACG  40 158
        moeA NONE
 cpfrc_00669 NONE
 cpfrc_00670 NONE
 cpfrc_00671 NONE
 cpfrc_00672  710055 ..  710066 +  -5.8  -2.76468   TTTTAAAGATTATTG                CTGG CCAA CCAG                 TCGTATTCAATGCTG  52 91
        betP  714321 ..  714348 +    -7  -2.64616   GAACTATTGTTAAGA        GGTGGCGAGGGCT CAA AGAT-TCGCCACC        TCCTATAGCTGCGCG  56 40
 cpfrc_00675  716041 ..  716078 + -16.4  -3.19659   AAAAAGGTAAGTGTG   GGCCCCATCTGATCTT ATATAC GGGATCGGATGGGGCC    TGTGTTGTGCGTATA 100 68
 cpfrc_00676 NONE
        metG  718920 ..  718960 + -16.8  -3.21747   CGCTAGTTGAATAAA GGCGCCACGCTCCTCGCTG TGAA CGGCGGGAGGCG-GGCGCC  TTCGTCGTAGACTGG 100 35
        tatD  719900 ..  719951 +  -4.6  -5.24551   GGGAACAATGGGGGA GGTGTGAACTATGTGGTTTGATTT CTGT GAATTGAATCAACTAGTTTGCACC TTTTTATTGCTTTAG  83 102
        rpfB  721355 ..  721409 + -11.7  -3.43007   ACGCCACTGTGCGAC TCAACGTCGTCGGTTTAGT-CTTCTCA CTA TAAGAAGCAC-GAACCGGCGGCGTTGG TGTGTTTTCACTGGT  82 69
        ksgA NONE
        ispE NONE
 cpfrc_00682 NONE
 cpfrc_00683  725572 ..  725591 + -13.6  -5.00884   AGGTCCTTCTGTTGA            GCGGTAGC TGCG GCTACCGC             TTTTTTAAACGGCGT 100 52
 cpfrc_00684  726045 ..  726055 +  -5.4  -3.40566   GGAGGGCAGCATACG                 GTCA CTG TGAC                 TTGTGAATCTGGTGT  54 99
 cpfrc_00685  727123 ..  727152 +   -15  -4.83169   CGCTCGTGTTTATAC       TGCACCGACGGC GGACGG GCCGTCGGTGCC        TTTTTATGGGAGGGT 100 56
 cpfrc_00689  729650 ..  729664 +  -3.5   -3.5764   CATGCGTTAGGCGCG               CATCC TGACC GGGTG               TTTGCCGCTCAAGTT  50 84
 cpfrc_00690  730216 ..  730234 +  -7.4  -4.07885   AAGCTACTACGTGGA             CCCATTCT CGG AGTATGGG             TTTTGCCACGGACTC  74 304
 cpfrc_00694 NONE
        pipA  735844 ..  735885 + -14.7  -3.96624   TCCAAATAAAACGAA TAAAGAAAGCCGCAGTT ACTGTGAA AACTGCGGCTTTCTCTA  TTTATCGTGAGCGTA 100 32
 cpfrc_00699 NONE
 cpfrc_00700  740926 ..  740947 +  -2.2  -3.11634   TCGTCGATTGCCATA           TAACCCAC GTTGTG GCGGGTTG            TTGCGTACTGTGGGC  42 487
 cpfrc_00706 NONE
 cpfrc_00707  749701 ..  749729 + -15.3   -4.2349   GGGAAGCAATATTTA        CCCCGTCTTCACT CAT AGTGGAGTCGGGG        TTTTGCGTATAGAAG 100 241
       tetR1 NONE
         mfd NONE
 cpfrc_00710  754466 ..  754501 + -21.4  -2.66098   AACAGACTGAAAAAT    GAGGCCACGCTGTTTT CTTT AAAACAGTGTGGCCTC     TCGCTTTAGGATCTT 100 44
 cpfrc_00712 NONE
 cpfrc_00713  757743 ..  757757 +  -2.8  -2.95298   TGCTGCTTCCTATGC               GCTG CGTCAGC CAGC               TGTGTAATAACTCAC  43 4
         eno  759302 ..  759356 + -19.7  -5.14645   AAATTATTTGATACC TAGGATAAGCGCCGTGAGGTTTTCTA GGGA TAGGAGACCT-GCGGCGCTTATTCTA TTTTTGTTGACTTCT 100 85
 cpfrc_00715  760040 ..  760052 +  -4.1  -3.53224   TGGCGTGAGACAATA                CACTT TAT GAGTG                TTTCCCAAGCCGATC  52 83
 cpfrc_00716 NONE
 cpfrc_00717  761714 ..  761750 +   -11  -5.64274   GTGGGGGCACAGCAG    GAGCATCCCAGC CGCGACCTAATTT GCTGGGATGCTC    TTTTTTTATGGGTGG 100 159
        ripA  763511 ..  763528 +  -4.1  -3.08467   CATTTTTTTGATTAT             GGGAACA AAAG TGTTACC              TGTATCGTTTCTAGG  47 83
 cpfrc_00719  764426 ..  764463 + -23.7  -2.59431   TAAGAGATACAAAGC   CGAAGGTGGTTGCTTCC TAAG GGAAGCAACCACCTTTG    TGCGTTATAGCAGAA 100 41
         mca  767633 ..  767643 +  -6.8  -3.07935   TGTGACAGTGACTAT                 GAGG AGA CCTC                 TTAGATGAATACGGT  55 329
 cpfrc_00724  767954 ..  767979 +  -2.5  -3.33696   GGCACACTGTCGGCG         GTGCGCTA-CTG CGT TAGATGGCGCCC         TTGCTTAAGAAGGCG  45 44
 cpfrc_00725 NONE
 cpfrc_00726  769527 ..  769537 +  -5.4  -3.76775   GTGAAGGAAACGGTC                 GATG TAC CATC                 TTTCGATGTCTTCGA  58 253
        glyA  771785 ..  771823 + -15.3  -3.60971   AGTGAGCTAAAGAAG  CCCCCGACACC-GCACGA TTTT TGGCGCTGGTGTCGGGGG   TTTGAGCATTGAGGT 100 50
 cpfrc_00732  775691 ..  775703 +  -3.3  -3.46586   TGTATTACGGCCTAA                CACAC AGA GGGTG                ATTTTATGTTTAAAG  50 144
 cpfrc_00733 NONE
 cpfrc_00734  777000 ..  777025 +   -12   -4.9792   TTGAGAGTTTAAAAA         GACTGCATCT ACAACA AGATGCAGTC          TTTTTCTATGGGGTA 100 37
 cpfrc_00739  783029 ..  783055 +  -2.8  -5.56264   CGGTATCCTCCTGTT         CTGCAGCGGCGT CCT GTGCTGCAACAG         TTTTTTCTGTTTCCA  85 101
        ispH  785731 ..  785780 + -28.1  -4.23213   ACTAAAACATAAAAT TACCCCCCTCCTAGTCGCGGG TTTGTCTT CCTGCGACTAGGAGGGGGGTG TTTGTTAGCTATAAA 100 36
 cpfrc_00745  789555 ..  789568 +  -2.3   -3.6959   AGGCCCGGTCTGGCC               GGCGT TAAA ACGGC                TTTGGATGATCGTCT  50 39
 cpfrc_00747  791672 ..  791687 +    -4   -3.7941   GATGCACCGCACTGA              GCACATG CCA CATG-GC              TTCTTCTGCGGCATC  56 393
        panE NONE
 cpfrc_00754  800066 ..  800078 +  -3.4  -2.98823   GAGAAAGAGCGTTGT                CGTT TTCTC AACG                TATATCTGGCACCGG  45 111
 cpfrc_00755 NONE
 cpfrc_00756  802367 ..  802380 +  -4.5  -3.35798   GTTTTAGGTTCCTGG               GCGCA TGAT TGTGC                TTATCGATGGCCCCT  52 18
 cpfrc_00757 NONE
 cpfrc_00758  803419 ..  803434 +  -5.4  -3.02263   GCAAGCAATATCCAC              GTTTCC GTTT GGAGAC               TATTGCGAAAGATGT  51 223
 cpfrc_00759  805079 ..  805117 + -10.9  -2.79291   TCGTATAGACGTTTG   TTGCTTGGCCCCGCGTG TAATC TGCGCGGGGCTCAGCCA   TCGTTAATAAGCTTT  74 50
 cpfrc_00760 NONE
 cpfrc_00761 NONE
 cpfrc_00762  808738 ..  808769 +   -16  -5.60993   TTTTGTACGACACTA      GGAGAGGGGATTCT TTAC GGAATCTCCTCTCC       TTTTTTTATGAAAGC 100 57
 cpfrc_00767 NONE
 cpfrc_00768 NONE
        mshB NONE
 cpfrc_00770 NONE
        fdxA NONE
        dapC  817857 ..  817869 +  -9.1  -3.10843   ATTAAGATTTATGAA                TCCCG TGT CGGGA                GTTTTAAGAATTTTC  67 125
 cpfrc_00773  818736 ..  818747 +  -3.6  -2.55069   GCCGCCGAATTGCCA                CGCC TGGA GGTG                 GTGTATTTCGCAGTT  42 268
        dapE NONE
 cpfrc_00780 NONE
       folP1 NONE
 cpfrc_00782 NONE
 cpfrc_00783  828464 ..  828486 +  -3.4  -2.63208   ACTGGTTAAGCGTGA           TGGTCGGTAG TTT TTATCGACAA           AGTTTTTCAATGCAA  42 41
 cpfrc_00784  828716 ..  828726 +  -3.2  -2.78706   TTTGATCAAGGAGCC                 CATG TAG CGTG                 CTTTCACATGTCATT  43 47
        rrmA  829614 ..  829648 +  -2.1  -5.10933   CCTACGGACGAAAAA    GCCGGC-CTCAAGGAT TCAC ATTTTCCAGAGCCGGC     TTTTGTTTTCGCTGA  73 49
        glgC  834424 ..  834457 + -13.9  -4.80167   AAAAAGACCACACGA     CTGGGTGTGCGGCTCT ACA AG-GCCACGCACCCAG     TTTTACTTTTTGGTC 100 39
        sigE NONE
        cseE NONE
        tatB  837268 ..  837279 +  -7.2  -3.13403   TTGTGCCACAGAAAT                GGCG ATGT CGCC                 TGTTCCTGGAGGGAG  57 454
 cpfrc_00797  840718 ..  840763 + -23.1  -2.91873   TAAGTCAAGATCATA TAAATAAAGGTGTGAAGTACG AATG TGTACTTCACACCTTTATTTA TGCTTTGCGGCTAGT 100 38
 cpfrc_00802 NONE
 cpfrc_00803 NONE
 cpfrc_00804  853817 ..  853833 + -10.1  -2.62184   CGATCGCGCTAAAGA              CCGTGGG TGA CTCACGG              TACTGTGGAAAGCGG  69 451
 cpfrc_00805  854021 ..  854052 +    -3  -3.66867   TCGGATAGGGGTATT      CGCTTCTATTTTCCT TGC AGGAAGG-GGCAGCG      TCTTTGTGGTTCTTT  51 62
 cpfrc_00806 NONE
 cpfrc_00807 NONE
 cpfrc_00808 NONE
        galT NONE
        galK  859543 ..  859553 +  -3.2  -3.72576   GAGTTAAGGAAAAAG                 CTTC TTT GAGG                 TTTACTGGAGCGCCC  53 39
 cpfrc_00811  861740 ..  861774 +   -26  -3.66784   AAGGTCTAGTACAAA     TAGGAGGGTGCGGAAT TTG ATTCCGCACCCTCCTA     TTGTCTTACAAGTCG 100 52
 cpfrc_00812 NONE
 cpfrc_00813  862686 ..  862731 +   -25  -3.84246   TCGAAGGATAAAAAA CAAAAAGGCGGGTCCCACAT GAGCTG ATGTGGGACCCGCCTTCTTG TTTGGTGCTTAAAGA 100 30
        helZ NONE
 cpfrc_00818  869395 ..  869406 +  -2.2  -3.61268   CACCCGCGAGTAGGG                GTAC TTCG GTGC                 TTTACGCGTTGACTG  47 28
 cpfrc_00819 NONE
 cpfrc_00820  873150 ..  873177 + -21.4  -3.26717   GATAGAAAAACAAAA        GGCGGCAGCTGT ATGT ACAGCTGCCGCC         TTACCTTATATAAGT 100 36
       marR2 NONE
 cpfrc_00823  874698 ..  874738 + -20.7   -3.0263   TACTAAGGTTTTGTC  ATCAAAACGGTCGTGATCA ATA TGATCACGACCGTTTTGGG  TGTTAAGCGGCTAGT 100 35
        deoR  876489 ..  876521 + -19.3  -3.63627   AAGATAAAACGCAAA      CCCCCTTCTAACAGA AAT TCTGATAGAAGGGGG      TTTAGAGTGTCCCCG 100 516
        lldP NONE
        argS NONE
        lysA  884944 ..  884954 +  -3.2  -3.32698   AGTGTTCTACTTTTG                 CTCT GAA GGAG                 TCTTATGTCGACTGA  48 246
         hom NONE
        thrB  887219 ..  887233 +  -2.8  -3.80841   TGAAGGTCGCTCAGC               CGGT TTCTGTC ACCG               TTTCCTAGTGCTCGT  54 3
         rho NONE
        prfA NONE
        hemK NONE
 cpfrc_00840 NONE
         rfe  896101 ..  896112 +  -4.4  -3.49864   AATGATGCCTCATGG                CTAG GAAG CTAG                 GTTTTGTTATATGGC  52 36
 cpfrc_00842  896706 ..  896750 + -19.5  -4.52047   TGTGTGGTTGTTTGT TGGGGCTATTTCGCGCTAGAA AAT TTCTATCGTGGAATAGCCCCG TTTTGTACTGTAATC 100 73
        atpB NONE
        atpE NONE
        atpF NONE
        atpH NONE
        atpA NONE
        atpG NONE
        atpD NONE
        atpC  904414 ..  904452 + -16.1  -4.03978   CCCTCCTCACTTAAA   GTTTTATGGCCTCTCCG CTTGC CGGGGAGGCCATAATGC   TTTGTATGGCAACTT 100 55
 cpfrc_00851 NONE
 cpfrc_00852 NONE
 cpfrc_00853  906075 ..  906092 + -11.3  -3.08934   CGATAAGCAAAAAGA             GCTAGGC AGCA GCCTAGC              TCTTAAAGTATGTGA  74 35
 cpfrc_00855  907102 ..  907120 +  -4.4  -2.51471   ATAGCACTGGGGCAA             CCGCATGC ATC GCAGTCGG             CTTCGTGGCATTCTA  44 53
 cpfrc_00856  908095 ..  908149 + -13.6  -2.83345   TGGGGCGCCAGAGAC CCGCTGAGTCGCCGCATATGCTCT AGGAATA AAAGCACATGCGGCGACTTCGCGA TAGTTAGTCTATCCA  85 51
 cpfrc_00859 NONE
 cpfrc_00860  914256 ..  914267 +  -2.2  -3.15324   TTTTAAGAAAGATAG                TCGC ACAA GTGA                 GTTTTCATCCCGATG  43 35
 cpfrc_00861  915480 ..  915492 +  -3.3  -2.57132   TTGTGCACTAGACTT                GCCCA ACG TGTGC                GTTATCAAGACGCAA  42 30
        etfB  916366 ..  916378 +  -3.3  -2.64616   ATTGCAGATTTCCTG                GCTGC TGA GAAGC                TCATCTAAGTAAAGG  42 5
        etfA  917387 ..  917420 + -12.6  -4.18018   GTTTTGCCCCTAAGA     TATGCCGAGCTTTT TGTGAC GAGAGCTCGGCATA      TTTTGACTAAAAGGA 100 50
 cpfrc_00864  918769 ..  918787 +  -6.6  -3.57144   TGCCTATGAGTATGA             GGTTGCCG TAC CTGCGACC             TTTGAGCATGGCGGG  60 186
        trmU  920701 ..  920713 +  -7.7  -3.05384   AGTCACCTAGTGAGT                GCCTA AAT TAGGC                TTAGCTGCGGAGAGA  60 15
 cpfrc_00867  921920 ..  921944 + -10.7  -3.48276   ACGTGCTGCCGCGAG          TGCATCCGAGG TGG CCTCGTGTGCA          TTATCTAAACGAACG  74 240
         lig  924582 ..  924617 + -18.5  -4.78326   CGGATCGGTATAAGC    GCTGGGTGTAGAGAGC AAAGG GCTCTCTACACCC-GC    TTTATTTATTTAAGA 100 28
        gatC NONE
        gatA  927479 ..  927527 +  -7.6  -4.14739   GAGCTGACATTAAAC CCCCTTTTTCTTTG-TTCCTTGC TAAG GCGGAAAAGCGAAGAAAAAGGGG TTTTGCCATCAATGC  75 43
 cpfrc_00874  929903 ..  929916 +  -3.7  -4.07568   GCGAGCGCAGACGTG               AGCGG AACC CCGCC                TTTTGCCCACCAAGA  60 180
 cpfrc_00876 NONE
 cpfrc_00877  932265 ..  932295 +  -3.4  -2.82623   TCACGTCATTATTGA       TTCACTTTAAAAAT TCT ATTTTTAAGGAGCA       TGATTATGAAGAAGA  43 16
 cpfrc_00878  933383 ..  933434 +  -7.6  -3.54935   GAAGTACTTTCACCT GGTTACTTTCCCTAATGGAA TCCATATAGATC TTCCATTAGGGAGAATAATC TTTCAGAGGAATTTC  66 40
        pfkA  934698 ..  934735 + -15.1  -3.96068   ACCTATAAAGAATCG   TAATGGCCTTTCTGCTT TTAG GAGTAGGAAGGCCATTA    TTCTTGTTGCCGTGG 100 42
        gatB  936397 ..  936452 + -17.9  -3.54743   GCTGCCAGTGTGTTT TGAGGCGTGTCACGATGTAGTTAACG CATAT TGCTAACT-TATCGTGACACGCCTCG TTATGCTTGGTCATG 100 65
 cpfrc_00881  937667 ..  937691 +  -7.9  -3.54297   TAGGAGAAAACTAAA          GGGGAGAAG TTGAGTT TTTCTCCCC          TTATAGTTAATGCAT  66 45
        lysG  939578 ..  939599 +  -2.3   -3.6052   ATAGACTGACTGTCA           GGGATCGTCA GAT TGG-GATTCC           TTATGGTTGCTTTTG  47 213
 cpfrc_00884  940686 ..  940698 +  -6.2     -2.55   TCTAAAATTTAGCGT                CCGG GCGCG CCGG                TAACTTCCCCTCTTC  50 69
 cpfrc_00885  942177 ..  942215 + -15.5  -3.04157   TCTAAGCCAATAAAA  TAA-GGCCCTGACCTCAG TTTT CTGAAGTCAGGGCCGTTA   TCTATGTGATCGTTA 100 36
 cpfrc_00890 NONE
        ilvB NONE
        ilvB  948899 ..  948913 +  -4.2   -2.8805   GGCGAAGAGAAATCT               TGCTCC GCG GGAACA               TATCTAGGAGATGGT  45 4
        ilvN  949474 ..  949485 +  -4.4  -3.57462   TAGGGGAGTTTGAGG                GAAC GTAC GTTC                 TTTCAAACTCCCCTC  52 51
        ilvC  950618 ..  950653 + -13.4  -3.79164   CGTCGTCCCAGAGAC    GTGCCGTGTTC-CCATG CAA CGTGATGAACACGGCAC    TTCCTTTATTTGTGG  95 41
        czcE NONE
 cpfrc_00896 NONE
 cpfrc_00897  955392 ..  955431 +    -7  -2.61264   AGCGAACCGGCGTGG  GCCCGGGTATCGTGGCGC GGTC GTGTCGGGATGCTCGGAC   ATTATGGATCGAGGA  56 121
        serA NONE
 cpfrc_00899 NONE
        leuB  958369 ..  958386 +  -5.5  -3.01984   AGTCGCATTTTAGTG             ACGTGAG CTAA CTCACGA              TATATCATTCGGTTC  51 106
 cpfrc_00901 NONE
 cpfrc_00902  961026 ..  961042 +  -5.2  -2.91452   TACGGTGAGCATTTT              CTTATC ACATG GATAAG              TGTGGTTGGGGTCAT  49 170
 cpfrc_00903  962203 ..  962228 + -15.5  -4.32048   AGTTTTTTTAAAAAA         GCTACCGTACC GTTT GGTGCGGTAGC          TTTTGCCTATTGTTG 100 50
        gltS  964952 ..  965005 +  -9.6  -3.91897   TCAGTAAACAGAAAA CCTCGGACTGGCGTATCACG-TAGCG TTAC CGCTGTCG-GGTCTGCCGGTTCGGGG TTTGTGGCTGGCAAG  79 34
 cpfrc_00906  966575 ..  966601 + -16.7   -5.4492   ACGGGGTACCACTTA         CCACCCAAAGC ACTGA GCTTTGGGTGG         TTTTTTATGTCTCTG 100 309
 cpfrc_00907  968237 ..  968268 + -11.7  -2.87463   GCTCTCTGATTCGAA      GGCTGTTCCTG-TC TGTGT GATCGGGAACAGCC      TCTATAAAAACCCTT  76 32
 cpfrc_00909  971394 ..  971406 +  -5.5  -4.07885   CGGAAGCCGTGTGCC                TACCG GGA CGGTG                TTTTGGAGGCCGATG  65 347
        leuC NONE
        leuD  974316 ..  974346 +  -7.6  -3.50853   GAGCAGTTGGGCTTG       TCGGCGTCCTTT TTTGTCC AAGGGACGCAGA       TTGTCATTACCCGCC  62 424
        gpsA  976192 ..  976212 +  -5.5  -3.35679   AAGAAATCCGAGTAG            CACACAA GGTAAAG TTGTGTG            TTGTGACTCAGAAAC  54 26
        ddlA  977323 ..  977355 + -16.5  -4.05033   TGATCATTAACCAAA      GAGCTAGGTAGCAAG ACT TTTGTTACCTAGCTC      TTTGTATGACATGGC 100 51
        thiL NONE
         ung NONE
 cpfrc_00919 NONE
        recG NONE
 cpfrc_00921 NONE
 cpfrc_00922 NONE
        coaD  985549 ..  985568 +  -5.8  -4.30576   GGTGTGATTCTGGTA            GGT-TGAGT CAC ACTCAGACC            TTTTGATGCTAGGAG  69 85
 cpfrc_00924  986322 ..  986341 +  -2.1  -2.57769   CCGGGGCTTGGTCGG            GCTCTTC TGAGCT GAAGACC             ATATATTTGATACAT  39 16
 cpfrc_00925  987609 ..  987631 +  -3.2   -4.2349   TCCATGCCTTTTGCT           CGTGCCTCGG ACT CCGCGACACC           TTTTACATGTACGGG  62 461
        polA  994205 ..  994229 + -13.7  -2.78816   CAGGAACGAGTGACA          TTATCGGGCCA TTC TGGCTCGATAA          TGTCCTGGAGACTAA  79 127
        rpsA  996630 ..  996675 + -20.9  -3.73106   TTGAATTAGTATTTC AATAAATAAAGCACCTAAGGA ACAT TCCTTAGGTGCTTTATTTATG TTCTTAGGGTTTTGA 100 43
 cpfrc_00933  996993 ..  997022 +  -2.1  -3.66908   CGTTTGAAAGGTAGG       CTCATGGCGTCTAC AAA GCAGACATC-TGAG       TTCATTTTGGACAAG  50 83
        ptsG  999040 ..  999069 + -12.9  -4.78237   ATGCAAGGAGATTCA       CCGCCCCCTTTGGT AAG ACTGA-GGGGGCGG       TTTTCTTATGAGATG 100 57
        coaE  999824 ..  999839 +    -4  -3.59279   AGTTTGTGGCTGGAA              TCATCT AAAA GGATGA               TTGATTATTGTGCTG  52 124
        pqqE NONE
        uvrB 1003432 .. 1003443 +    -3  -4.48792   TATTTCTATTGTTCG                TGAT CCTG ATCA                 TTGTTTTTGACTTCT  65 208
 cpfrc_00938 1004066 .. 1004104 + -11.2    -4.258   ACTTTCGCACAAGAA   TAAAACCCAATGCCTTTT GCA ATAAGGTACTGGGTTTTA   TTTCTTCCTAAATAG  87 41
        uvrA 1011647 .. 1011673 +    -8  -5.46276   CATATGCATGGATCT         CCCGTTCATTGT TTA AAGATGGACGGG         TTTTTTCTATGTCTT  95 239
        infC NONE
        rpmI NONE
        rplT 1012977 .. 1013010 + -16.2  -4.85599   TAAAATTAAACAGGA     TATCCGCCTCGTAG AAGTAC TTACGAGGCGGATA      TTTTTATGGGGTACA 100 49
 cpfrc_00948 1014786 .. 1014796 +  -6.8  -2.85847   CTCATTTTCTCCATT                 CCCA GTG TGGG                 TATGATGTGAGGATT  54 117
        pheS NONE
        pheT 1018481 .. 1018517 +  -8.9  -3.74347   AAGAGCTCGATCTAA   CGCGTCACACGTATCCA AGAAC TGGAT--GTGTGGCGCG   TTTGCGCTTTCTGGA  74 44
        argC NONE
        argJ NONE
        argJ NONE
        argB NONE
        argD NONE
        argD NONE
        argF NONE
        argR 1024763 .. 1024776 +  -4.5  -3.90112   GTTTCTTGGAGCGCA               GGTGT GCTG GCACC                TTTCCTTGGGGCAGG  59 88
        argG NONE
        argH 1027664 .. 1027674 +  -2.4   -3.3785   TCTAACTAGGCGTCG                 GGGC TTT GGCC                 TTATCCATCGGTTAA  45 79
 cpfrc_00961 1027900 .. 1027921 +    -3  -4.42806   ATTACTTGGCCCCAG           GGGAAAAC GCACTA GTTTTCCG            TTTATTTCCAAATAC  62 11
        tyrS 1029244 .. 1029291 +   -16  -4.63218   GGTTTAACGCTTAGC TAT-TAAAAGGGCCTTAAGAAGA AAT TCTTCTTAAGGCCCTTTTGCGTG TTTTATTCCCAGGGC 100 27
 cpfrc_00963 NONE
 cpfrc_00964 NONE
 cpfrc_00965 NONE
        ppnK NONE
        recN 1041477 .. 1041497 +  -4.1  -3.35071   GAAAAGGGATAAATT            GAAGAAA AGTCATA TTTCTTC            CTTTATTCTTTGATA  50 29
 cpfrc_00968 NONE
 cpfrc_00969 1043732 .. 1043767 +  -8.4  -2.76046   AACAATAAGTATTGT    GTCGCGCGTATTAGTA AGCT TATTGATATGCGCGAA     TGCTATTAAAGTTGA  62 33
 cpfrc_00970 NONE
        xerD 1045372 .. 1045396 +  -6.5  -4.63527   GGGCTTAAACGCCTA          TTCTAGTCAAG CGT TTTGACTTGAA          TTTTTGAAGTAATCG  77 33
        scpA NONE
        scpB NONE
 cpfrc_00974 NONE
       bioD1 1048447 .. 1048459 +  -3.3  -4.25104   GAACCGCCGACGATA                ACTCC GAT GGAGA                TTTTAGTAGCAGCGG  62 443
        bioA NONE
        bioD NONE
 cpfrc_00979 NONE
 cpfrc_00980 NONE
         cmk NONE
 cpfrc_00982 1055990 .. 1056028 + -19.9  -5.24796   GCTGCTGTAGTTCAA   GATGAGGTCATATTCTC CTTGA GAGGATATGACCTCATC   TTTTTATTCTGTAAA 100 42
 cpfrc_00983 1057779 .. 1057814 + -13.4  -4.67943   AGTGCCTAAAGCAAA    GCTCAGCGCCAC ACAATGAAGAAC GTGGCGCTGAGC     TTTTGTATATTAAAA 100 54
 cpfrc_00985 NONE
 cpfrc_00986 1062872 .. 1062908 +   -16  -3.01726   CATAAGTATTTTTAA    GCCCCTGGGTGAAG CTCCTCATT CTTCATCCAGGGGC    ATTTATCTGAGCAGG 100 36
        ciuA 1063926 .. 1063952 +  -8.8   -3.3782   CAGAAAAAGCAGAAA        GGAGGCTCACT AAAAAA AG-GAGCCTCC         TTGGTTGCATGCGTG  66 55
        ciuB NONE
        ciuC NONE
        ciuD NONE
        ciuE NONE
        ciuF 1071556 .. 1071567 +  -2.2  -4.37886   ACATTTTTTAAGTAG                TGGG TGTC CCTA                 TTTTGTCAAGCCTAG  61 103
 cpfrc_00993 1071832 .. 1071851 +  -6.4  -4.09285   TTCCAGCACGCCGTC            GATCTGGC CGGC GCTAGGTC             TTTAGTGTTTTACTG  68 127
 cpfrc_00995 NONE
 cpfrc_00996 NONE
 cpfrc_00997 1076955 .. 1076987 + -13.7  -3.82097   ACTGTCCGGAAATAA      TTGAAGTACACCA CTGTACA TGGTGTACTTCAA      TTTCATGCCTTTACA  95 67
       secA2 1083383 .. 1083402 +  -4.4  -2.94144   AACCATTGACTGAAA            G-TTCGAAT TTT ATTCGAAGC            TCGTTTGACTCGGAG  47 158
        odhI NONE
       merR2 NONE
 cpfrc_01003 1085361 .. 1085373 +  -4.1  -3.92659   AGAAATAAGTCTCAA                CTTCA ACT TGAGG                TTTAACTTTTGGGCG  57 33
       merR3 1086064 .. 1086104 + -22.9  -4.07133   GCCGTTTAAAATAAA  GGGATCCCTTTCAACAG ATCTGGC CTGTTGAAAGGGATCCC  TTCTTTATACGCGTG 100 48
 cpfrc_01005 1086280 .. 1086298 +  -3.8  -3.78778   CAGAGCCTCCGCTTG             CTTGTGCA GCT TGTGCGAG             TTCTTGATCTACTGG  56 68
 cpfrc_01012 1094679 .. 1094722 +  -4.6  -3.40611   GAAGATGTTGGAGAA TGCGATGTC-GGATTAGCAGG TTG CTTACTTATCTAGCCATCGCA TCTTCTTAAAGTACC  52 77
 cpfrc_01014 1096906 .. 1096921 +  -3.2  -3.85698   TCTGCAACATACGCG              CCGC CCTGGATA GCGG               TTTGTGCAACACCAG  54 511
         cfa 1099411 .. 1099464 + -16.7  -3.76224   ATAAGCTATAAGTAA CACACGCGTCCATGCCGTGACCTTG AATT CTAGTTATCGCCATGGACGCGTGTG TTTACTCGCTAGGAG 100 37
 cpfrc_01019 1103126 .. 1103179 + -15.7  -2.92246   TTTTTACTAGATATT TAAAAGTGATCCCCCACGTGATGCT CTTATA AGC-T-ACGCGGGGGATCACTTTTA TGTGCTTGAAATTAG 100 41
        cobG NONE
        cobH NONE
        cobI 1113691 .. 1113716 + -16.3  -3.21595   AGTAAAAAACAGGAA         GGCTACTGCAT ATAT ATGCAGTAGCC          TTCCTGCTAGGAGTT 100 36
 cpfrc_01043 NONE
 cpfrc_01044 1133537 .. 1133584 +    -4  -3.50326   AAATAACTTGGATTA GCCACGACATTTCACTCCTGGC TTTT GCATAGAACAAAATGTCGTGGC TTCTCATCATTTGCT  52 25
 cpfrc_01056 NONE
 cpfrc_01057 NONE
        pyrD 1150905 .. 1150956 + -13.3   -3.4158   ACTGATGCAGTGTTT TCCATGGCAGAAAAAGAAAAAGA AACTAA TCTTTTTCTTTTTCTCCCCCGGA TTGATGGTTTTTGCA  91 394
 cpfrc_01066 NONE
 cpfrc_01067 NONE
 cpfrc_01068 1158261 .. 1158275 +  -5.6  -3.97689   GAAGAATTTTTTCTG               CGCCGA GGG TCGGGG               TTATTTGGGCTTGTC  63 86
 cpfrc_01072 1164378 .. 1164392 +  -2.1  -3.83758   CCATATAGTTTGTAG               GGGAA GTTCA TTCTC               TTCTTAGTATTAATT  52 57
 cpfrc_01073 1165029 .. 1165066 +    -7  -4.66057   CTGATTTTAACGCGG   AAAGCCGCTGCCTTCA TTTTTT TGAAGACAACGGCTTA    TTTTCCTTTGTATCT  83 47
 cpfrc_01077 1168555 .. 1168570 +  -3.2  -3.56155   ATTGACGCAAATGTG              CTGGTG TGGC CAACAG               TCTTTGCTCTTACTA  49 152
         acn 1175686 .. 1175718 +   -15  -2.90813   CAGGATCATGGATTT      CGAGGACTTCATTC TCGTT GAGTGGAGTCCTCG      TCCTTTAGACCAGTA  90 59
        acnR 1176371 .. 1176400 + -15.2  -3.57918   AAGGCAAACCATTCT       GCAACTCTAGAC CAAGTA GTCTAGAGTTGC        TTCTATGGTCTCCGT 100 70
 cpfrc_01083 NONE
 cpfrc_01084 NONE
 cpfrc_01085 1178849 .. 1178894 + -12.2  -5.24129   GACTTTCTAGTTTCT ATAGTGTGCCAGGTAGCCGTAT ACCG ATAC--CTACCTGGCACACTAC TTTTTTATCCCGAAA 100 44
 cpfrc_01086 1180427 .. 1180443 +  -3.5  -2.72166   TTCTATCGATATTTA              AGGCGCC ATA GACGCCA              ATGTTTAATTCAGAG  42 84
 cpfrc_01087 1182877 .. 1182923 + -19.9   -3.2827   AGACATAGAAAACAA TAAAATGCTCAGGACTTAG AAGAAAACA CTAAGTCCTGAGCATTTTA TTACTGCTTAAATAA 100 40
        mptB 1193440 .. 1193458 +  -3.1  -3.72407   CTTGTGGTGGTCGTT             TAAACGC GCCCG GCGTTGA             TGTTTTACACTTTCT  51 7
 cpfrc_01097 NONE
 cpfrc_01098 NONE
        ctaA 1196343 .. 1196386 + -29.9   -5.4505   TAGTAAAGCAAGGAA GGCGGGGTGTTAGAGACCA ATACAA TGGTCTCTAACACCCCGCC TTTTTTATTAAACGC 100 43
         tkt 1199878 .. 1199923 + -13.5  -2.82623   AACCTAACTGGATTA CTGTGTAGGCCGCATAC-ATCT GTG AGGTCGTATGCGGCCTACATGC TCCTTCTCAAGCCCA  85 56
         tal 1201059 .. 1201092 + -19.9  -4.23892   TAAGTCATCATCTAA     CTTATAACGTGGGAT ACTC ATCCCACGTTATAAG      TTTTAAGTCATTAAA 100 38
         zwf NONE
 cpfrc_01104 1203817 .. 1203832 +  -3.2  -3.36073   TCTAAACTAACAAGG              GAAACC TCAT GGTTAC               TGTTTGCCCAGTATC  48 36
        devB 1204558 .. 1204586 + -14.7  -3.46563   CTGAGCAGACAGAAA        CGTCGGTAAGC AATAACC GCTTACCGACG        TTCTCGTGATATCTC  93 48
 cpfrc_01136 NONE
 cpfrc_01137 NONE
 cpfrc_01138 1242790 .. 1242834 + -13.2  -3.39521   AACGCTTTAAAATAA GCCAAAGGTCGTTATCCCAT CGTCGAC ATGGGAT--CGACCTTTGGC TTGAATTTTAATGGC  91 26
 cpfrc_01154 1261617 .. 1261628 +  -5.8  -2.52543   CCACTGCATCATGTA                CGTC GGCA GACG                 TGGCTTCACGCGCAT  48 207
       tetR4 NONE
 cpfrc_01159 1268467 .. 1268478 +  -2.2  -2.63455   CGTTACCACTCAAAA                GCTG AACT TAGC                 GTGTTCTATCTCTAC  39 96
       sdaA2 1270032 .. 1270054 +  -7.1  -2.79183   CAAACAAACACTTAC           TTTCTCAGA TAGGC TCTGGGAAA           TATGCTAAAAGTCAC  57 121
 cpfrc_01162 1272061 .. 1272115 + -13.7  -2.83522   GGATAAATAGGTTCA GGAGAACATACAGTTGAGCGCTGGAA TTAA TTCCAGCGCTCAACTGTA-GACAGCC CTTTAATCCAAAAAT  85 35
 cpfrc_01164 1273828 .. 1273853 +  -2.6  -2.79183   CGCGCACTGCGTACC         CCACGACAAA ATACTC TTTGTTGTGC          TCTAGTCGGCGTGCC  42 106
        ppiB 1277717 .. 1277728 +  -4.4  -4.64861   ATATATAATTTCCCT                GAGA TTTT TCTC                 TTTATTTTCCCAAAA  68 166
 cpfrc_01169 1278263 .. 1278300 + -23.1  -3.35798   TTAATTCTTTCACAA   TAAATGGGCTTATCTCC TTAA GGAGATAAGCCCATTTA    TTGTGAATCCCCCAT 100 44
 cpfrc_01182 1293397 .. 1293411 +  -7.2  -3.23979   GCTACCCAGAAATCA               TTGAAC ATC GTTCAA               TTAGTGGCTTATAAT  60 47
        bioW 1294231 .. 1294241 +  -5.4  -3.53012   CAACAGTTTTCTCCC                 CTCT CGG AGAG                 TTTGCGGGAGAGAAA  56 89
        bioF 1295584 .. 1295600 +  -4.3  -2.95166   CCAATCGCGGCAATC              CGGGCAG AAA TTACCCG              CTCTTTTTCCGCTCG  46 234
 cpfrc_01194 NONE
        aftC NONE
        msrB 1308502 .. 1308545 +  -4.6  -4.16307   GACTAGCTCTCACTA TTCCCCTCGTCTTAGC CATTTTGTATCC TCAGAGACGAGGGGAA TCTTTTTCTTAGCCC  64 35
 cpfrc_01198 NONE
         rnd 1311404 .. 1311417 +  -3.1   -4.3898   GATTGTTCTCGAGCC               GC-TGC ACC GCAAGC               TTTTATAAAAATCAT  62 4
 cpfrc_01206 1317734 .. 1317773 + -13.1   -4.2074   CCACCAAGGCTATGA  GAGAAGGTCAGG-GCA TTTTATCGC TGCTCCTGACCTTCTC  TTTGTGTATTAACAC 100 52
        ppgK 1320473 .. 1320496 +  -2.5  -3.01712   CTGCGTCCTTCCGCC          TGTTGCGCTT TATTC AAGTGCA-CA          TGTTAGGCAGGGGAA  42 218
        sigA 1322216 .. 1322269 + -33.5  -3.74713   AACTAGTCATAGCTA CAAGGTAAATGTGTGGGCCCCTCCC AGTT GGGAGGGGCCCACACATTTACTTAG TTATTAAACTTTTTG 100 39
 cpfrc_01215 1325473 .. 1325502 +  -9.3  -3.78811   ACATTGAGCTAGACA       GAGGGCGGCA-GAC GTC GTCATGCTTCCCTC       TTTAGCTTCCGTTGT  74 55
 cpfrc_01216 NONE
         dtd 1327639 .. 1327651 +  -4.1  -4.29845   GAAGGAAAACGGGAA                CTTTC TGA GAAGG                TTTTCCGTTGAGTTC  62 107
        sigB 1328755 .. 1328775 +  -8.5  -3.64822   TTCACTTTCCTCTAA            TAAATTGAA TTT TTCAATTTA            TTTACATCAACCAAT  71 95
        dtxR NONE
        galE 1330640 .. 1330676 + -16.8  -3.77302   CGGACCTTCAATATT    TGCAGCAGCATAAATC TCTAT GTTTTATGCTGCTGCA    TTCGTTTTCTCATCA 100 41
         pac 1333147 .. 1333179 +   -10   -3.5627   GCTAAAACAGTAAAA     GCGAGGAAGCATAGT AAAC ACCAT-CTTCCTCGC      TTTACAGCGTGGTAT  74 42
 cpfrc_01223 NONE
 cpfrc_01224 1335842 .. 1335886 + -12.3  -2.92472   TCGTGTTGCTCTACA AATGCGTAGTGCCTAG-GAC TTAATC GTCTCTAGGCACTACGCACA TCTAATACTTTATTT  81 45
        oxyR 1338450 .. 1338489 +   -13  -3.60094   CATAGATACAACAAA  GGTGCTGGGCAGCGA-GTA CTA TATGTCGCTGATCAGCACC  TTCTAATTCTATCTA  89 36
        hrpA 1344264 .. 1344276 +  -3.4  -2.91144   CCTACATTCGATAAC                CGTT TAACT AACG                TAGTTTAAAGGCTAC  43 504
        lexA 1345972 .. 1345985 +  -6.7  -3.63425   ACCACGGTTCGGGCA               TCGGA CTTT TCCGA                TATTTGATTTCACTC  63 275
        sugR 1346792 .. 1346841 + -17.9  -3.00766   TTATAACTGCATAAA TAAAC-GCCATGCGGGCGGCCACT TTA AGTGGTCGCCCGCATGGCCGTAGC TCTATGTGAGCTATT 100 27
        fruR NONE
        fruK 1350545 .. 1350560 +  -3.2  -3.06183   ACTAAGATCAAAGTT              TCCTAG CATA CTCGGA               TTCGCTCGGAATGCC  45 20
        ptsF 1352953 .. 1352969 +  -2.9  -3.58269   CCGAGGTTAAAGAAA              GCGTTAG AAT TTGGCGC              TTTAGAGCTGAATTC  49 331
        ptsH 1353287 .. 1353320 + -13.1  -4.80959   AATCTTTTCTAGAAA     GCGCTGAGGTTAGGT AATC ACCGCACCTCGGCGC      TTTTCTTATGCCTTC 100 39
 cpfrc_01240 1354584 .. 1354594 +  -2.4  -3.07962   TCCTTGTTGATCCAA                 CACC TAA GGAG                 TCTTAAACTATGCGC  42 9
 cpfrc_01241 1355319 .. 1355364 +   -22  -4.15833   TCCCGAGAAAAAGAA GAATCCCGTGTCCCGATCAG AGTTCA CAGATCGGGACACGGGACTC TTTTAAAATCGTGCT 100 78
 cpfrc_01244 NONE
 cpfrc_01245 1360236 .. 1360253 +  -4.1  -2.52676   CTGTGATTGTTGATC             GAGTTCC GTAA GCAACTC              TACGTTGACGCCCTC  42 296
 cpfrc_01249 1364271 .. 1364324 + -10.4  -4.44392   CTTTATCAAATCGAA CGACCGGAGCACACTGACTTGTCTC AGATC GAGCCGAGTGA-TCTGCTTCGGTCG TTTACTTTTTCTTCT  90 60
 cpfrc_01250 1365484 .. 1365495 +  -2.2  -4.67942   CAACAAATAATGGAT                TGTC TTTC GGCA                 TTTTAGTTTGTTCAG  65 133
        bioY NONE
        bioM NONE
        bioN 1371964 .. 1371993 + -12.3   -4.4648   CTTAATACAACAAAA       GGTACAAGTCC GGCCACGA GGACTTGTACC        TTTTCTCATAACGAT  95 50
 cpfrc_01263 1374978 .. 1375028 +   -23  -4.30576   GCAGCTTATACATAA GACTCCGTTGCGACCATAGA-GA CACTAC TCTTCTATGGTTGCAACGGAGTC TTTTCCTAATGGCGC 100 58
        truB 1391497 .. 1391540 +  -7.6  -3.53012   TCTCGCTGCAACTTA GCAAGAGCTTGGTGA-GCGC ACCACC GCGCATCACCAAATTC-TGC TTTGCGGAGCGGAAC  62 522
 cpfrc_01285 1402164 .. 1402177 +  -5.2  -3.99324   GGCGCAACCTCAATA               GGCC AGTTGA GGCC                TTTCTCATCATGACG  63 343
 cpfrc_01287 1404401 .. 1404424 + -16.8  -3.91196   CTGCTCGAAGAACAA          GGGAGTGCTG CATG CAGCACTCCC           TTTAATATCTATACG 100 42
 cpfrc_01289 1406770 .. 1406780 +  -6.8  -3.12327   TCGCCTGGTTGAGTT                 TGCG CAC CGCA                 TCTTCACTATCAAAG  54 358
 cpfrc_01297 1415508 .. 1415530 +  -6.2  -4.58685   CTCATAACTTTTATC           TGTGCTATGC AGA GCCTGGCGCA           TTTTTACAAGGCTTT  75 63
         mtr 1417193 .. 1417225 +  -4.9  -5.02606   AATCTAAATCTAAAA     GCTGCAAGTG-CTA CCGTTT TGGTCGCTTGCGGC      TTTTATTGTTTCCTC  80 58
 cpfrc_01299 1418384 .. 1418400 +  -2.1   -4.4009   AATTCGAGCTGCATA              ACGCGGC CTT GCTGTGC              TTTTATCACGTGGGC  61 25
 cpfrc_01306 1427691 .. 1427724 + -12.6  -5.69068   TAAAATATTAAAAAA     GCGATCCTACCT AATATCTGCA AGGTAGGATCGC      TTTTTTATGTTTTTG 100 38
 cpfrc_01309 NONE
 cpfrc_01315 1435548 .. 1435571 +  -3.2  -3.57144   GCCCCGAACCCCCAA          GAACAATGCTG CCT CAG-ATTGATC          TTTACACATGGCAGG  49 261
 cpfrc_01328 1449577 .. 1449608 + -12.4  -4.27886   AGCGCATAAACAAAA      CCGCTTAAGATGAGC ACT GCTCACCT-AAGCGG      TTTATGTGTTTAAAA  95 48
 cpfrc_01343 1470359 .. 1470398 +  -3.4  -3.62597   AGTATCACGACTTCC  CGTCAGGGGGCTCATACA AAGC TGTACGAGCGCGCTCCCG   TTGTTAGGAGATAAA  53 42
 cpfrc_01346 1474910 .. 1474921 +  -4.4  -4.29327   GCTGAACGTTAACAT                CATC TTCC GATG                 TTTCTGTTGATTCTC  66 183
 cpfrc_01348 1476593 .. 1476615 +  -2.7  -3.21276   TTATCTCATCAATTT           GCAAGAATC GGGGG GATATTTGC           TATTGTCCGCACGGC  45 90
 cpfrc_01349 1477906 .. 1477948 + -10.7  -3.84648   ACGTCAGTGATCCAA CCGACA-GGACTTGGCCC CAACAAGC GGGCCAAGTCTGTGTCTG TTTAGTGCTATTACC  85 31
        glgP 1480945 .. 1480966 +  -8.7  -4.98672   CTAAACAGCCACGAT           CCCCAGC TCTTACAT GCTGGGG            TTTTGTGTTTTTGCA  88 56
 cpfrc_01351 1481951 .. 1481979 + -15.4  -4.58283   AACCATTTAAAAAAA        GGGAAGGGATCT TTTAC GGATCCCTTCCC        TTTTTGCACGCGTTA 100 43
 cpfrc_01366 1496351 .. 1496370 +  -7.2  -3.27475   CGGACCAGAGTATCT            TTAAGCAG CAAG CTGCTTAG             TCTTGTGATACCGCC  62 22
        bioQ 1498815 .. 1498832 +  -5.6  -3.18366   AATTTACCAGCTAAA             GTCAGT GACATG ACTGAC              TCTCTTCCTTCGACC  52 27
        glgX 1501095 .. 1501152 +  -4.2  -3.98083   TAAAAAAATATCACT C-CCAGGG-CTGTGTCCTCTGCTTATCGT CAC ACGAGCAGACGAGG-CACAGTCCTTGGCG TTTATGCATTGCCTA  60 59
 cpfrc_01371 1502800 .. 1502818 +  -2.4  -4.60797   CTACTACGCCGTCGG             GTTATGTC CAC GGCATAAA             TTTTGTGTGTCAGGG  63 137
 cpfrc_01372 NONE
 cpfrc_01373 1504645 .. 1504658 +  -3.8  -2.73681   CCTCATAACAAGACT               GGGA TTACCT TCCC                TAGTTGACATGAGTG  44 33
 cpfrc_01374 1504882 .. 1504923 + -19.7  -3.01791   GGGGTTCTAATCAGG GATTAAAGGGGACAGAAAC TTAA GTTTCTGTCCCCTTTAGCC  TATTGCGAGCAAACT 100 31
 cpfrc_01380 1512536 .. 1512563 + -14.9  -2.71144   GAATCTGCTGTGTGA        GCACCGAGGCGC GACTG GCGCCTCGG-GC        TGGTTCGGGAAGCTC  83 198
 cpfrc_01384 1515538 .. 1515577 + -15.9   -4.3953   GATATAAAAACAAAA  GCAATGTCGCCGCT-TCC TTGGT GGATAACGGCGACATTGC  TTTCTTGTACTTAAC 100 50
       ansA2 1517681 .. 1517728 +  -2.4  -3.86897   GGATCCATCCGTGTC CGAACTCAGGGTGGTGGACGTC TTGG GTTGCCCGCCATCGTGGGGACG TTTCTGAAAGGTCGA  52 133
 cpfrc_01409 1545284 .. 1545295 +  -4.4  -3.06312   AAGTTTCTCCGCCAT                CTGA GTTG TCAG                 TTCGATCCCGACTTT  47 166
        idsA NONE
        mptA 1549304 .. 1549318 +  -4.2  -3.72592   TTTTCCGGCAATGCG               CTACGT GAC ACGTTG               TTGTTACTCACCCTT  55 365
        pknL 1551692 .. 1551741 + -26.9  -2.94218   AGGTTTTTAGTGGGG AAAAACGTCTCGCTTCCTTGAAA AGCT TTTCAAGGAAGCGAGACGTTTTC TATGTCATAACAGCT 100 39
        asnB 1570051 .. 1570088 + -15.7  -3.21774   GGCGCCCCTCGCGCT   GTGGTGGGATTAGACGG TAGT TCATCTAATCCCACCGC    CTATTTTTTCTTCCT 100 55
 cpfrc_01431 NONE
        cobU 1572346 .. 1572357 +  -2.2  -3.29144   ATTACAGTTAAAAAG                CGTT CTTT GACG                 TTATGCAACACATCG  45 16
        cobT NONE
        cobS 1574431 .. 1574468 +  -9.2  -3.58533   AAGTCGAAGTAAAAA   GCCATAAGCCGATTTG TTTCTC TACAGCGGCTTATGGC    TTTAAAAAATTCTCA  71 76
        pepB 1577230 .. 1577267 + -15.7  -5.24796   AAGTAACTTCTTCAC   TCCGCTGATGGTC-GGCC AAG GGTAAGACCATCAGCGGA   TTTTTCTTCTATGAG 100 35
        sucB 1579886 .. 1579927 + -31.1  -5.14645   TTCCACTGGTAATCA GGCGGCAGCCGACTTCTCT TTCA AGAGGAGTCGGCTGCCGCC  TTTTTCTTCGATTCT 100 66
        gcvP 1583031 .. 1583044 +  -2.3  -2.83641   GGCTAGCCTCGCTTC               ACGCA TCTC TGCGG                TGTGGTCCTACGTTC  40 35
        gcvT NONE
        gcvH 1584737 .. 1584783 + -16.2  -4.88405   CGCTCTGCCCTAGCC GAACAACGCCACCATGTCTTT TAGAAC AAAG-CATGGTGGCGTTGTTG TTTTGTTTAGGCGTT 100 51
        lipB 1586165 .. 1586181 +  -4.3  -3.06515   CTTTTCCCTGGTTAA              CCCCCAT CGA GTGAGGG              CTTTTCGACGTGCAC  47 81
        lipA 1587293 .. 1587318 + -11.3  -5.80364   TCAGTATTTTAGAAA         GAAGACTTATC CCCC GATAGGTCTTC          TTTTTTTCTTGGCAT 100 50
 cpfrc_01445 1588365 .. 1588394 + -15.9  -4.53607   TTTTACACAAATAAA       GGCTTGATCACTG TTTG TAGTGATCAAGCC        TTTTCTCGTAGTTTT 100 47
       glnA2 1590587 .. 1590629 + -15.1  -3.37259   AACCCTAGTTAGCAG CG-CAACCCTTGTTT-CACCG TCA CGGTGTAAGCAGGGGTTGTCG TGTTTCGGAGTACTT 100 84
 cpfrc_01457 NONE
 cpfrc_01458 NONE
 cpfrc_01459 NONE
 cpfrc_01460 NONE
 cpfrc_01461 NONE
 cpfrc_01462 NONE
 cpfrc_01463 NONE
 cpfrc_01464 1602129 .. 1602139 +  -6.8  -3.87869   CGGCAAGGCCGAGGC                 GCTC TTT GAGC                 TTTATCCGCAATTCG  66 66
 cpfrc_01465 NONE
 cpfrc_01466 NONE
 cpfrc_01467 NONE
 cpfrc_01472 1607556 .. 1607584 + -13.2  -4.24534   CTAGAACACAGGAGA        CTCCCCACCG TTTCTGCTT CGGTGGGGAG        TTTGTCTATTCCTTA 100 44
 cpfrc_01478 1616009 .. 1616059 + -22.7  -3.99957   TAATTGCTCTTATAC ATAAAATCCCCGTGGGGAGACGC GGCAA GCGTCTCCCCACGGGGATTGAAC TTTGTGGGTGTTTAA 100 38
 cpfrc_01485 1623462 .. 1623477 + -10.4  -3.51934   CGAGCGCCTCACGCA              TCGGGG AAAA CCCCGA               TCTTTCTAAGCAAGC  77 404
 cpfrc_01490 NONE
 cpfrc_01491 1631718 .. 1631743 +  -7.5  -3.83026   GGTTTATAACACTCA         GAGGCGGCC CTTATACA GACCGCCTC          TTTCCTGTCACAAAG  69 48
 cpfrc_01493 1633473 .. 1633488 +  -3.2  -2.92475   TAGTCCGCAGGCCAA              GCGAAA CGTA TCTCGC               GTTTCTCCACATCGG  45 38
 cpfrc_01495 1635221 .. 1635236 +  -4.6  -3.95324   TCTGTTGCACTTGCC              CGCAGG TCAC CCTGGG               TTGTTGTTAACAATC  59 0
 cpfrc_01500 NONE
 cpfrc_01501 NONE
 cpfrc_01502 1642105 .. 1642116 +  -7.2  -3.44146   GTTGTACCCCCATAG                CGGC TGCC GCCG                 TTGCTTCTACAGGCC  61 256
        aceE 1646500 .. 1646548 + -20.4  -4.56597   TACGCGTCTTGATTG CGCTAAAGGCCGGTGCCC-GCAC TTAT GTGTAGGGCACCGGCCTTCGGTG TTTTTAGACAGAACG 100 42
 cpfrc_01507 NONE
        nagD 1648933 .. 1648947 +  -4.2  -3.05596   CTGCAGTCGACTGCG               CGCG GATAAAA CGCG               TTGCGTCGCCAGGTC  47 227
 cpfrc_01512 NONE
        thiX 1652612 .. 1652647 +  -8.2  -4.42851   CAGCTAGCAATAAAA    CCACGACAGAGACGCT ATTA AGCGCTTACGTCGTGG     TTTTACATTTATTGA  80 44
 cpfrc_01516 NONE
 cpfrc_01517 1657809 .. 1657821 +  -4.7  -3.81154   ATTCTCCCCGTGCCT                CGCCC TAA GGGGG                TTTGCTCAGTGTTTT  58 344
 cpfrc_01520 1662116 .. 1662128 +  -3.3  -4.41047   CTCCACGCACCACTA                TCCCC GTG GGGAA                TTTTCGTTCCACACT  64 368
         znr 1665121 .. 1665158 + -16.5  -4.90266   CGAACCGACACTTAG   GTCCAGTCTAGGGTCCCT TTA AGGG-CTTTAGACTGGAC   TTTTTCATTAGTGAG 100 41
         zur 1665807 .. 1665844 + -14.1  -4.46212   AAACTCAGCGCATAA   CCTCATGAGGGGCGGCA AGCT TGCCGCCCCTCATATCG    TTTTATCCTAAAGCC 100 26
        malQ 1683060 .. 1683087 +   -20  -3.86015   CCGCGGATTGATAAA        GGCCCATTTCCC CGTG GGGAAATGGGCC         TTTATGCGCAACCTA 100 41
 cpfrc_01544 1686870 .. 1686903 + -12.6  -3.05816   TGCGCACCAACCCCC     TCCGTGGGGAAT TCGAGTAAAT ATTCCCCACGGA      TTAGGTAACGCATGC  83 6
 cpfrc_01550 NONE
 cpfrc_01551 1692653 .. 1692663 +  -5.4  -3.05463   AGAGGTTGTAGGGTA                 TGGA GCA TCCA                 TTAGATAAGAAGGAT  51 125
        brnQ NONE
 cpfrc_01553 NONE
 cpfrc_01554 1696420 .. 1696438 +  -7.4  -3.18849   AATCACTACGCTCCC             CGGAATCA CAA TGTTTCCG             TCTTCATCGTGTGCC  59 129
 cpfrc_01558 NONE
 cpfrc_01559 NONE
 cpfrc_01560 NONE
 cpfrc_01561 1704654 .. 1704669 +  -4.8  -2.71712   GAAAGAACAACGGGA              TTATTC ATGG GAATAA               GTTTAAACCACGCGG  45 144
 cpfrc_01564 1707010 .. 1707020 +  -5.4  -3.28712   CCGGTGCTACTGCGC                 GCAA TCC TTGC                 TTATCGACGCCCACC  52 279
 cpfrc_01566 1709494 .. 1709514 +  -4.5  -4.58283   TTACCCATGACCTCG            GCATAGCGG CTT CCGCCGAGC            TTTTTGCGCGCGTTC  71 405
 cpfrc_01574 1719039 .. 1719061 +  -7.7  -2.73364   AGCGAGAACAGATCG           GCTAACACG CTCCA CGAGTTAGC           TCATTGCAGTCCGAA  58 253
        rpsT 1719388 .. 1719433 + -19.3  -3.14132   AGTTCTACGCACGAA TAAGCGCCCGGTA-TCTGAAGT TTT GCTTCAAAATACCGGGCGCTTA TTCGTGCAGAAACAC 100 40
 cpfrc_01587 NONE
 cpfrc_01588 1731530 .. 1731547 +  -5.5  -3.54129   TCAACATCTGTGATC             CCCACTG CCAG CAGTGAG              TTTCCGCCGGCTGTG  55 271
 cpfrc_01594 1739793 .. 1739816 + -11.8  -4.41348   CTCCAAAAGAACGAA          GAACCGGC-AC AGA GTAGCCGGTTC          TTTCTTTCCAGACGC  93 63
 cpfrc_01596 1741375 .. 1741385 +  -5.4  -4.57569   ACCCGCGCTTCATTC                 TCTC AAT GAGA                 TTTTTGCGAAGATAC  73 90
       tetR5 1748582 .. 1748618 + -17.5  -4.32649   AAATAATCCATAGCT    AAAAAGCGGTTCCACTG CCC TAGTGGAACCGCTTTTG    TTTAATTTTTACGCT 100 39
 cpfrc_01607 1756822 .. 1756861 +  -6.4  -5.18866   AGCTTCTCCCACCTC  ATTCCTCAGCCCTACC ACCATAAA GGTTAGGCTGAGGAAC   TTTTATTTCTTTGAA  91 56
 cpfrc_01608 1757735 .. 1757763 + -14.6  -4.57482   AGATTCTTGATACAA        GTGCCCACGCTT CTCGC ATGCGTGGGCAC        TTTATTTGTGCGTAA 100 57
        pepN NONE
 cpfrc_01613 1763037 .. 1763082 + -13.4  -3.07192   GCACTAGTTCTGCTT TCTCGCTGCTGCAAGCAG TCACTTGTTT CTTCTTGCAGCAGCGAGC TCTCTTCGCGGCCTT  86 34
 cpfrc_01614 1763265 .. 1763276 +  -2.2  -3.31792   GGCCTATCCAAATCG                GGGT TACT ATCC                 TTATCGGGCTCATCG  45 112
        mscS NONE
        glbO NONE
 cpfrc_01617 1765855 .. 1765871 +    -5  -3.86311   GTAGCCAGGATAACC              GCGCCG TCTCT CGACGC              TTTCCCTTTAACTCT  61 444
 cpfrc_01622 NONE
 cpfrc_01623 NONE
 cpfrc_01624 NONE
 cpfrc_01625 NONE
 cpfrc_01626 NONE
 cpfrc_01627 NONE
 cpfrc_01628 1779263 .. 1779295 + -17.1  -3.35798   CCCGCCGGGGAGCTG      CCGGAGCACAGCG ACTTCCC CGTTGTGCTCCGG      TTCTGCATGCGACAT 100 267
 cpfrc_01629 1780762 .. 1780776 +  -4.2  -2.90462   ACCCCTTTGCGTAAT               TGCTCC GGG GCAGCA               CTATTTTATCGCTTT  45 27
        pcsA 1787720 .. 1787749 +   -13   -4.3739   GGGCAGGACGAAAAA       GATAGGTCGGGA CGCAAT TCTCGACCTATC        TTTTATCCCCACCTC 100 271
 cpfrc_01635 NONE
        cmrA NONE
 cpfrc_01637 1792917 .. 1792944 + -18.6  -4.78237   CAGCCACCCCAATAA        GCTCCCTGACTA TTCT TAGTCAGGGAGC         TTTTGTTATCCGATA 100 152
 cpfrc_01638 1793775 .. 1793789 + -12.8  -2.52543   TGGGAGTGTGCCGGG               CGCCGC TTG GCGGCG               TGGATTAGACACGAT  81 3
 cpfrc_01640 1796848 .. 1796884 + -10.2  -3.21099   ACTCCACGTACCTAG    TCCCCGCTAGACGA TTTTTATTT TCGGTTAGCGGGGA    TTCGTCATAACAGGG  73 50
        pncA 1797556 .. 1797571 +  -3.2  -3.83323   CATCAGCTTAAAGAG              CATGGA TGTG TCCTTG               TTTAGCTTCTCTACC  55 5
         bcp NONE
       tetR6 1800070 .. 1800109 + -15.1  -3.21218   ATTAAGCAGCAGCAA  GGGCCTGCTTCACAGAG AAATGA CTGTGTAAAGCAGGCCC   TTGATCATGGGAAAT 100 505
       tcsS5 NONE
       tcsR5 NONE
 cpfrc_01651 1812769 .. 1812814 + -19.1  -3.02263   CATGCTTGGAAAAGC TACTGAGAGACCCCCTAGCCC AAAC GGGTTAGGGGGTCTCTCAACG TATTGCGAGCGCTAT 100 67
 cpfrc_01654 NONE
 cpfrc_01655 1816326 .. 1816371 + -17.1  -3.97602   CACTAAAGCAGATAC GCACAAAGCTCGGAACTAGTTC TTA GATCTAGTTCCGAGCTTTA-GC TTTCTAGCTGTCTTG 100 45
 cpfrc_01663 1822953 .. 1822964 +  -2.2  -4.19817   GCCTGTTCTGTCTAC                TCGA TTCA TCGG                 TTTTAAGTAGATACG  57 4
        dinG NONE
 cpfrc_01665 1825766 .. 1825782 +  -2.9  -4.07526   TGCGCCATCGCCCAC              TGCAACG GTC TGATGCA              TTTCTATGCCTGATT  58 250
 cpfrc_01667 1828402 .. 1828423 + -15.9  -3.80573   GTCTATTTTCATTTC           CTGCCTCCG CATA CGGAGGCAG            TTTCATCATAGTGCC 100 145
         ftn 1833546 .. 1833590 + -36.1  -3.17392   AACGCACGCTTATAA TAATGGGGATGGCCCCACCAC AAA GTGGTGGGGCCATCCCCATTA TTCAGTTAGAGCATG 100 48
        nadE 1838747 .. 1838762 +  -6.1  -4.18119   ACGATCCGGCCAACA              GGCTC GCCGCG GAGCC               TTTCTATGATTTCGT  67 401
       arsR1 1839772 .. 1839784 +  -3.3  -2.63715   CTATTACTGCTGATG                CCACG CCC CCTGG                TGCTCTGCGATGAGT  42 0
 cpfrc_01679 NONE
 cpfrc_01680 1842018 .. 1842032 +  -4.9  -3.25015   CTTGCATGGATAGCC               GTCGC GCTAA GCGGC               TTCGTCCTCCTTGGC  50 487
 cpfrc_01684 NONE
 cpfrc_01685 1846855 .. 1846867 +  -4.7  -4.03234   CTTCGGCTTCCAACT                GGCCG ATA CTGCC                TTTATCTGAACGGGG  62 282
 cpfrc_01691 NONE
 cpfrc_01692 1851616 .. 1851651 + -11.9  -3.81755   CCTGCACGTATAAAG    CAATCTCGGGCCCAC ATAAAA GTGAACCCGAGATTG     TTATGTTTAAACGAT  88 28
 cpfrc_01696 1863103 .. 1863130 + -17.2  -3.03474   CTTTTAAATAGACGA        CAAGGGTAAGAG TTTT CTCTTACCCTTG         TGTGTGATTATGAGG 100 41
        cysK 1865705 .. 1865757 + -10.8  -5.24129   GCGACTAAAAAATTA CCGAGTCCCATGTTTATCACTAGC TCCGC GTTAGTGATAAACATGGGAATTTA TTTTTTCTACGGAGG 100 33
        cysE 1866467 .. 1866490 + -16.8  -5.14477   CACCAAAACGTTAAA          GGAGCAGTCG GGTC CGACTGCTCC           TTTTTTAAATCTCTG 100 47
        cydA NONE
        cydB NONE
        cydD NONE
        cydC 1874868 .. 1874895 + -21.4  -4.30576   ACGCAGATATAAAAA        GACGGTGCCCAC CACA GTGGGCACCGTC         TTTTAGTGATGACAA 100 41
 cpfrc_01707 NONE
        phoU 1879065 .. 1879099 + -11.6  -5.07275   ATACCGCACAAAAAA     GCTTCCCAACTC GCGACCAAAAG GAGTTGGGAAGC     TTTTTATCTCTGTAC 100 48
 cpfrc_01715 1885911 .. 1885924 +  -2.3  -4.07568   AGAGTGCTCAAAAAG               CTCGC CTCC GCGAC                TTTTCGCCCGGACGC  56 466
 cpfrc_01717 1887372 .. 1887383 +  -2.2  -4.19238   TGAGATACTCCAGGT                CCAG ATCC TTGG                 TTTTACAGTTCCACC  56 174
 cpfrc_01719 1889416 .. 1889435 +  -4.2  -3.61774   CTCTGGTTACGGCGG            CGGTGCGA CAAA TCGGACTG             TTTCGGGCTATTGTG  55 120
 cpfrc_01720 1889786 .. 1889837 + -26.9  -5.28983   AGCTCCGCAACTTAT ACAATGCGAAGAGGCTCGGGAGGA ATTAC TCC-CCCGAGCCTCTTCGCATTGC TTTTTATGTTTTAAC 100 67
       nrdI2 NONE
       nrdF2 1894711 .. 1894724 +  -8.1  -2.89668   TGGTGTGCAATAGCG               GCCAC GATA GTGGC                TGTATGAAAATGTTC  59 97
 cpfrc_01732 1902683 .. 1902711 + -11.8  -5.54079   CATAAAACTCAAAAA        GGCGCTGTAC CGATATCAA GTACAGCGCC        TTTTTTAGTTTTTAA 100 36
 cpfrc_01738 NONE
 cpfrc_01739 1909915 .. 1909937 +    -7  -2.50492   CGGACATTCCCACGC           CGTCATCGAT AAT ATCGATGGCA           ATATTGCTGCTGGTG  51 240
 cpfrc_01742 NONE
 cpfrc_01743 NONE
       tetR7 1914168 .. 1914183 +    -6  -2.63079   ATAAATCTCATGTTT              TGGCGG CCCG CCGCCC               TGGATTCTGTAGAAA  51 86
 cpfrc_01745 1915383 .. 1915393 +  -3.2  -2.71625   CCCCGCCTGGGACGC                 CATC AAA GGTG                 CTCTTTACTAATTTT  42 4
 cpfrc_01746 1917749 .. 1917771 +  -5.6  -3.02829   GGTCCTAGAAATATC           GCGGATTA AACGTGC TGATCCGC           TCTTCCCCCAATATG  50 462
 cpfrc_01749 1921853 .. 1921881 +   -16  -3.19522   CTAGGATATGAGAAA        GGCGCGGATCCT TAAAC GGGGTCCGCGCC        TTAACTCTTAAATCC 100 37
 cpfrc_01750 NONE
 cpfrc_01751 NONE
        otsA NONE
 cpfrc_01753 NONE
        otsB 1927675 .. 1927688 +  -4.5  -3.90744   AAGCGAGCCTCTCCG               CGGTT ACAG GACCG                TTGTTTGGAACAGAA  58 486
 cpfrc_01756 1929565 .. 1929581 + -10.1  -2.73681   CCAGCACCACAATCA              TTCCGGG TTC CCCGGAG              TCCTTGGCCTGAGTA  69 413
 cpfrc_01762 1934239 .. 1934284 + -22.7  -4.08578   AATCGCTAACCATAA CGCGTAAGGGCTTCCCCACTA ATAA TGACGGGGAAGCCCTTACGCG TTTCTACTTAACTTT 100 39
        radA 1937754 .. 1937766 +  -4.8   -4.1673   GCAGTCAATGTCTGA                CCAG ATTCG CTGG                TTTGTTGCAAGGTTA  62 242
        mutY 1940149 .. 1940164 +  -4.6  -3.04398   CACGATCGTTGTGAT              CCTGGG CAGG CCCACG               CTTTTCGACGCCAAC  47 258
 cpfrc_01772 1944978 .. 1945017 + -20.8  -5.45802   CCGCGCGTACGCATA  AAAGTGTGCCCCGGTGTC ATAT GACACCGGGGCACACTGG   TTTTTGTTTTAAGCG 100 53
 cpfrc_01775 1948457 .. 1948480 +   -11  -3.92592   AGCAGAATACAAAAA          TTCCGCCACG GAAA CGTGACGGAA           TTTCATATTAAAACT  85 43
 cpfrc_01778 NONE
 cpfrc_01779 1952313 .. 1952331 +  -4.6  -3.29649   TTTTATAGACCAACC             TGTCTTTT GGG AATAGACA             TTCCTGTACTAACGT  52 110
 cpfrc_01780 1953899 .. 1953915 +  -3.6   -4.1347   CACGCGTCCACACGG              CTCCGG CTAAT CCGTAG              TTTGTATCATTGGCA  60 252
        betA 1959319 .. 1959335 +  -2.2  -3.65812   CTCCGCCAAAGGTAG              CCGC CACATACAC GCGG              TTATCTTCACAGCGG  50 59
         ppa NONE
 cpfrc_01797 1968880 .. 1968900 + -15.5  -5.64421   GAATAAAGACAAAAA            GTCTAGGCC TTA GGCCTAGAC            TTTTTTATTTAGAGT 100 35
 cpfrc_01799 1971872 .. 1971883 +    -3  -3.02364   ACTCCCTAAGACTGT                GATA AACC TATC                 TATATGGTTGCTGAT  43 32
       marR3 NONE
 cpfrc_01801 1976250 .. 1976266 +  -5.8  -4.25104   ATGAAAGGCTTAAGA              CGTCAC ATCCA GTGGCG              TTTTAATGGGAGCAG  69 117
 cpfrc_01806 1982184 .. 1982227 +  -8.9  -2.89564   TCATTATTATCCCCC AGAGCGCACGGCTAGT-GCTG GCAA CAGCCAC-AGCCGTGTGCCCG TCTGTGGGATAAGAG  65 144
 cpfrc_01807 1982928 .. 1982944 +  -2.9  -5.02606   CTCAATTAATCAGTG              GCTAATC TAA GGTCAGC              TTTTCTTCTTTCCTC  74 92
        mrpA NONE
        mrpC NONE
        mrpD 1991934 .. 1991982 +  -2.4  -4.34263   AAGGCAAGGATACAA GAGGAGCACAGAAATGATTGCAGG CGC CC-GCCGTCGTTTTCG-GCCCCTC TTTGTCTTGTTAGCC  61 9
        mrpE NONE
        mrpF NONE
        mrpG NONE
 cpfrc_01816 1994853 .. 1994870 +    -7  -3.14132   CATATAGGATTCCCA             TTCCGC CCAGTC GCGGAA              TTGGTAAGGCAGCCC  60 472
        defB NONE
 cpfrc_01821 NONE
        xthA NONE
         cls 2000235 .. 2000245 +  -6.8   -3.1082   ACCGCTCCCCTCATA                 TCCC CAC GGGA                 TGTCTTGGATCGCTG  54 120
 cpfrc_01827 NONE
 cpfrc_01828 NONE
        pknG 2007091 .. 2007101 +  -6.8  -3.85698   CGTAACGAGCAATAG                 CGAG TTC CTCG                 TTTGTAGGAACCACG  65 63
         fpr NONE
 cpfrc_01833 2011735 .. 2011766 +  -9.5   -4.8543   CCCATAAAATTTAGC      CAGAACCTACGGC AGATAA GCTGTAGGTTCTA       TTTTTATACCCCTTG 100 42
 cpfrc_01834 2013397 .. 2013410 +  -4.5  -2.57211   TTAGTAATACGAGCA               GCCACG CTG CG-GGC               ATTATCCAAGGCGAT  46 397
         gpt 2014594 .. 2014609 + -11.8  -4.74132   GCAGGCATAAGAAAA              GCGCCC CTAG GGGCGC               TTTTTCGTGGGCTCT 100 56
 cpfrc_01840 NONE
 cpfrc_01841 NONE
 cpfrc_01842 2017516 .. 2017540 + -21.5  -5.01535   ACTGCTAGAACTGAA          GGAGGGCACCC ATT GGGTGCCCTCC          TTTTTATCCTTCTAA 100 51
 cpfrc_01850 2025352 .. 2025366 +  -4.2  -3.96068   CTACGAGATCTGCAA               TCAGTG CGC CCCTGA               TTATTCTTCCCATAG  57 11
 cpfrc_01852 2027877 .. 2027924 +  -5.5  -2.70786   CCTCTGCTACTTCTA AGCCCGAGCGTGCGCCGATGTCC TTGA GGATGCCGAC-CA-GCTCGGGCA CTTCTGCATTTTCCG  48 205
        srtB 2053510 .. 2053520 +  -6.8  -3.55444   AGGTCAGGCGACGAG                 CCGA AAG TCGG                 TTTGCCAGCTGAGCA  60 289
 cpfrc_01877 NONE
 cpfrc_01878 2058504 .. 2058538 + -13.7   -5.4505   AGCACCCAACGTGCC     TCAAGGCTGCTACTC ATTGC GAGTGGCAGCCTTTA     TTTTTTATTAAGCAA 100 40
 cpfrc_01879 2059641 .. 2059676 +   -25  -4.18401   ACCCGCACATAAAAA    GGGTGGTCTTCACGTT AGTT AACGTGAAGACCACCC     TTTTGCCCTCTCTAG 100 52
 cpfrc_01881 2062628 .. 2062640 +  -6.3  -3.14693   TACCAAATAACGTTC                GCTTA GTT TAAGC                TGTGTTCATGCTAGA  57 144
 cpfrc_01882 2063862 .. 2063873 +    -3  -2.75708   TTAATGCTTTCTGAA                CAAA AAGT TTTG                 GATTTTTTCCGCCGA  42 109
 cpfrc_01884 NONE
 cpfrc_01885 NONE
 cpfrc_01891 2074176 .. 2074189 +  -6.7  -3.28924   GTTCCGCCTTTTCTG               GCCAT CCCG ATGGC                TTGTCCAAACGCCTG  56 281
 cpfrc_01894 2077760 .. 2077774 +    -5  -3.53712   CCAGGATTAAATGCA               GTCTTA AGA TAGGAC               TTACTTCTTAACGAT  55 159
         cpp 2079181 .. 2079195 +  -2.7  -5.10933   TGCACGATCTCCCCA               CGGGG ACGAG CGCCG               TTTTGTTTTAGCTGA  76 254
 cpfrc_01906 2092643 .. 2092683 + -19.2  -3.78962   CGCGGACGACTAATA  AAAAAGTGTGGCCCTGGT TCCTC GCCAGGGCCACACTTTTA  TTTACATCTGTTTCA 100 28
 cpfrc_01914 2100156 .. 2100171 +    -9  -2.93455   TCTGACTTAACTAAT              GCAAGC CACC GCTTGC               TAGTTATCTGTCTAC  66 36
 cpfrc_01915 2102934 .. 2102947 +  -2.3  -3.34488   AAAGTAGAACGCCGC               TACCG GATA CGGAA                CTTTTTAGCAGCGTT  45 34
 cpfrc_01916 2103887 .. 2103897 +  -8.2  -3.40775   GGAACCCGCACCCCT                 GCGG TCT CCGC                 TATTTCAGTGACCGT  64 207
        aspC NONE
 cpfrc_01930 2117694 .. 2117716 +    -4  -3.52307   GCAATAGTGTTCGTA           TTCTCTCCCA CGC TGGGTGGGCA           TTCTGCTCTATGTTG  52 34
        lysX 2120996 .. 2121026 +   -14   -3.6579   GGAACATATGATTCT       CGCCGCGTAGGAAC ACA GTTTCTGCGCGGAG       TTGTTCCCCTAGCTT  95 44
        aftD 2133110 .. 2133123 +  -5.9  -2.57423   TTTTTCTCACAAATT               CCCCG GGGG TGGGG                TGCGTTAATCCCTGT  49 348
 cpfrc_01941 NONE
 cpfrc_01942 2136815 .. 2136835 +  -9.7  -3.71284   ATAAGATGTATCGCC            GCACGTTCT AAC AGGGCGTGC            TTATATTCCTCAGAA  76 263
 cpfrc_01944 2138675 .. 2138689 +    -7  -3.06796   CGCGATGGTTTCCTC               GGCCTC TAC GCGGCC               TTCAATGCGGTCCAC  54 293
 cpfrc_01946 NONE
 cpfrc_01947 NONE
       mmpL1 NONE
 cpfrc_01949 NONE
 cpfrc_01950 2146320 .. 2146331 +    -3  -3.15354   ACTTAATCTAAACCT                CTTA AAAA TAAG                 TATTCCCTTAACATA  45 35
 cpfrc_01951 2147120 .. 2147155 +   -22  -4.67048   GATTAGGACCATTCT    GAGTAGCTCCACCCGC TTCT GCCGGTGGAGCTACTC     TTTCTTTTCAGATCA 100 91
 cpfrc_01952 2147914 .. 2147938 +  -6.5  -5.30189   AATAAATAAGAAAAA         TCCCCTG-GA CTTTCA TCACAGGGGA          TTTTTTCCTCTTATA  91 32
 cpfrc_01965 2170690 .. 2170701 +  -5.8  -3.18582   ATTCATAAAGAAGCT                GCAG CTCC CTGC                 TTGGTCGCTCCCGTC  54 282
 cpfrc_01975 2184031 .. 2184066 + -19.9  -5.26119   AAAGAAAATGCTTAA    CCGCGAGAACAGGCT TTAAAC AGCTTGTTCTCGCGG     TTTTCTTTTTAGAAC 100 58
        farR NONE
 cpfrc_01980 NONE
 cpfrc_01981 2189457 .. 2189467 +  -3.2  -5.41143   CCATAGACATAGACA                 GCTT TGG AGGC                 TTTTTTTGGGGCCTA  81 78
 cpfrc_01984 NONE
 cpfrc_01985 2193141 .. 2193159 +  -6.7  -2.82623   AGGCAGGATACGGAT             CGCGTGA TGAGT TCATGCG             TGATTCTCAAGGGAA  54 110
       lytR2 2194402 .. 2194446 + -22.4  -3.06671   GTAATTATCATCGCA GGAGTAATGCCGTTGCGGTT CAATC AGCCGCAACGGCATTACTCA TCTTAGGGTGCCTCT 100 37
        deoA 2204686 .. 2204700 +  -5.7  -3.65827   GGAACATGCAGAACT               TGCAG TGAGC CTGCA               TTTCCATAGACATTA  61 49
        sodA 2207850 .. 2207868 +  -4.6  -4.52589   ACGCGCATAAACTCG             CTGCAAGT ATT ATTTGTAG             TTTTCTATCCGGGAG  71 260
 cpfrc_01999 NONE
 cpfrc_02000 2209853 .. 2209881 +  -2.9   -4.7033   GTCTTCCGGAGCCAA        TACGCTCCTGCAG GCG CTGCACGTGCGAC        TTTTCTATTGGATTA  68 55
 cpfrc_02005 2214186 .. 2214198 +  -3.3  -3.00923   CACCACAGCCCATCC                CGCTG CCA CAGCA                TATGTAATGTTCCCC  43 57
 cpfrc_02008 2217940 .. 2217964 + -12.3  -5.68489   TTAGTGGGGTTTCAA          TGAGTCAAATC ACC GATTTGGCTCA          TTTTTTATTGTTATA 100 64
        lsr2 2218921 .. 2218950 +  -2.7  -3.67792   GAGAACACGACCAAT       ATCGCGGTTGGAG GAAC CTCCAGCCACCAA        TTTCAATACCTCTAG  51 200
 cpfrc_02012 2221493 .. 2221519 + -17.4  -4.17296   GGTCCTCACAGAAAA         GAGGCTGCCGAT GCG ATCGGTAGCCTC         TTTCTATATGTCGCG 100 42
 cpfrc_02015 2224125 .. 2224141 +  -2.3  -3.92996   GTTGATGCGCCTGCG              TGGTT CCGGGAT AACCA              TTCTTCTCTGTCAGC  54 162
 cpfrc_02017 2225528 .. 2225560 + -17.8  -4.71828   TACTAATTCCATAGC      AAAGGGCGGACGAG GAGCA CTCGTCCGCCCTTA      TTTTGTTGATCCGCT 100 35
 cpfrc_02020 2228384 .. 2228402 +  -8.1   -4.2349   GCAATAAACCCATAC             CCCCTCT GTCCA GGAGGGG             TTTTGGGTATGCAAA  75 34
 cpfrc_02024 2238363 .. 2238409 + -13.9   -3.4052   CTCATAGAAGCGAAA GGGGCCCATACTCTCTCGCAG TGGAATT CTGCT-G-GAGTATGGGCCCC TTGGTTGCATTAAGG  93 51
 cpfrc_02027 2240704 .. 2240742 + -13.2  -4.53036   TAATCCCGCGTTATC   CCCGGCGACATAGC ACTCACCACCC GCTACGTCGCCGGG   TTTTAATGTTTATGC 100 38
 cpfrc_02028 2243297 .. 2243313 +  -3.7  -4.36914   CACTGCATATCTACT              GGATG CAGCGAT CATCC              TTTTCTCACAAAAGC  63 202
 cpfrc_02029 2244999 .. 2245009 +  -2.4  -3.35775   AGATGGCGATCAAAG                 GCAC GTC GAGC                 TCTTTAGCCAATAGT  45 304
 cpfrc_02035 2250822 .. 2250839 +  -4.1  -3.60296   CACAGCAAAAAGCGA             CCAGG TTAATCTC CCTGG              TTTGCCATAGGAGTA  51 151
        uspR 2256239 .. 2256263 +  -2.1  -2.85813   AAATGAGAAGGATTA          ATCTCCAATAT CTC ATGTAGGAGAC          TCCTCTTCTTCGAGT  40 25
 cpfrc_02041 NONE
 cpfrc_02042 NONE
 cpfrc_02043 2258853 .. 2258865 +  -6.3  -3.14132   CTGGTACACCTCTTT                GAATC CGC GATTC                TTCATGAGCGAGGAA  52 343
 cpfrc_02045 2260760 .. 2260778 +  -4.4  -4.12857   GGTGTGCCAATGGGG             GAGCCACC AAG GGTGGCGA             TTCTTTCTGCTACTT  62 417
        fpg1 2261886 .. 2261902 +  -7.9  -2.86728   CCATAGCGGCATTGG              GTCCACG CAA CGCGGAC              TATCCTCTGAATCAT  59 35
 cpfrc_02048 NONE
        chrS NONE
        chrA 2277821 .. 2277847 +  -2.1  -3.85698   ATCACCGCAGCCCGG         CAGCAACGCCT TATTT AGGCCGCGCTG         TTTCTCCACCAGCGA  52 8
 cpfrc_02065 2288199 .. 2288211 +  -6.2  -4.10925   AAGTCACGCTGGCTG                GGGG AGAAG CCCC                TTTTGCCCAGTGTGT  66 96
 cpfrc_02066 NONE
 cpfrc_02067 NONE
 cpfrc_02068 NONE
        nanA 2293349 .. 2293407 +  -9.6   -2.8991   GAAACCGGAAAACAA -GCTCACCGCCTTCGTGCCTGAAGATT CCACAC AGATAGCAGGCAGGAAGGCGGTGAGCC GTTCTATTCTTAAGT  68 64
 cpfrc_02071 2294453 .. 2294468 +    -9  -4.07133   AAAGATATGGGCCAG              CATCGC GGCC GCGATG               TTCTTTCTAAAAATG  76 75
 cpfrc_02074 2296942 .. 2296984 + -15.8  -4.65263   CCACCTCTATTTAAT GACAATGAGATTGCGCACGA TCA TTGTGCACAATCTCATTGTG TTTCTTTTACCCCCT 100 41
        crtB NONE
        crtI NONE
        trpP 2306755 .. 2306780 +  -8.3   -5.4492   ATTGTGCATCCCAAA         GCTCGCTTG AAAATTCC CAAGCGGGC          TTTTTTATATCTATA 100 137
        trpE NONE
        trpG 2309101 .. 2309120 +  -9.4  -3.08679   GGTCAAGGACCATAA            TTAACGTC ACGT GACGTTAA             TCTTAGGTACAAAAA  66 26
        trpD NONE
       trpC1 2311780 .. 2311800 + -14.7  -5.63236   TGCTATCTATTTCTC            TGGCCCGCA CCA TGCGGGCCG            TTTTTCTTTTTGGGT 100 154
        trpB NONE
        trpA 2314219 .. 2314231 +  -3.4  -3.14487   AGCCCGTGACCATTA                GTGA CTGCT TCAC                GTTTTCGGTGTAATA  46 106
 cpfrc_02089 NONE
 cpfrc_02090 NONE
 cpfrc_02091 2316027 .. 2316064 +  -6.3  -4.74706   GATACACTAAGAAAA   TCGGCTTCCCAACAT CTGTACTT GTGCTGGAAAGCCGA    TTTTTGCGTGTTAAA  80 31
 cpfrc_02096 NONE
 cpfrc_02097 2323938 .. 2323952 +  -4.2  -3.27525   CAACAAGAACAATAC               TGATCG CCC CGGTCG               TTCCCTTTGACGCCA  50 77
 cpfrc_02098 2327523 .. 2327571 + -24.3  -5.16841   CTTAGGCGTACTACG CAAAACTGTGGTGGGAAAGAATG ATC TATTCTTTCCCACCACAGTTTTC TTTTTCTTACTATAA 100 36
        sigM 2328683 .. 2328697 +  -6.4  -3.17075   TGCTTTCTCCATATA               TCTGGC CCT GCTAGA               TTCAGTTACAACAGC  57 204
        trxB NONE
        trxC 2330097 .. 2330111 +  -3.5  -4.27316   ACAAAGCCATCACTT               TGCCG TTAAC CGGTA               TTTTGGCTTGACCAC  60 63
        cwlM 2331338 .. 2331366 + -16.9  -5.53079   GCTCTAAATTTTCCA        TGGTGGTTTTCCT TTT AGGAAGACCACCA        TTTTTTCTGTGTTTT 100 34
        rpmH 2336796 .. 2336807 -  -4.4  -3.38991   ATTCTTGTAAGAAGA                GACT AAGC AGTC                 AGCTTCTCACGGCCC  50 16
        rnpA 2336419 .. 2336436 -  -3.5  -3.14344   GAGGCTCCTCATCAA             CGTAAAAG AAG CTTTT-CG             ACGCCCGAACGAACA  46 4
 cpfrc_02108 NONE
 cpfrc_02107 2335058 .. 2335085 - -17.8  -4.44284   AACTGAATAGCAAAA        CTGCCGCCACCA TGTG TGGTGACGGCAG         TAAGCGGAAGAAAAT 100 40
        gidB 2334217 .. 2334233 -    -8  -2.61374   AATACCTAGAAGGCA              GACGGT TCCAC ACCGTC              CAATGTCGATTTAGC  58 36
        parA NONE
        parB NONE
 cpfrc_02103 2330978 .. 2330988 -  -4.6  -4.18693   AAATGATAAAGCAAA                 CGGC GTT GCCA                 CTTTTTATTTCGGTT  62 417
         cca NONE
 cpfrc_02094 2317224 .. 2317256 - -12.8   -3.2121   AGGACTAGAAGAAAC     CGAGTGCC-CGTCCC ATAC GGAACGCGACACTCG      CAAGAAAAAACTCAC  84 72
 cpfrc_02093 NONE
 cpfrc_02092 2316027 .. 2316064 -   -10  -4.77079   GATACACTAAGAAAA   TCGGCTTCCCAACA TCTGTACTTG TGCTGGAAAGCCGA    TTTTTGCGTGTTAAA 100 53
 cpfrc_02079 2301310 .. 2301351 - -18.1  -3.38272   GATTACCACGCATAA TAAAGGGCCGGGCCAACCA CACA CGGCCAGCCCAGCCCTTTA  TTTAACAGGAGAAAT 100 48
 cpfrc_02078 NONE
 cpfrc_02077 2299019 .. 2299031 -  -2.6   -2.6914   TATCTTTTATAGAAC                CAGG TAACC CCCG                CAAGCAGCCCCGCAA  41 111
 cpfrc_02076 2298627 .. 2298664 - -16.4  -2.71322   TTAATTCACACAGCA   GAGGCCTCGCC-GTAGC TCAAT GCCACAGGCGAAGCCTC   CAAAACGTTCTTATT 100 87
 cpfrc_02075 2296944 .. 2296982 - -18.4  -2.75183   ACCTCTATTTAATGA   CAATGAGATTGCGCACGA TCA TTGTGCACAATCTCATTG   TGTTTCTTTTACCCC 100 81
 cpfrc_02073 2295328 .. 2295338 -  -8.2  -3.84825   TCTACCGAGACGAAA                 CCCG AAT CGGG                 TTGGAACATTGGCGG  73 216
 cpfrc_02072 2294223 .. 2294259 - -12.5  -3.31144   CCTTGATGTGCAGAA   GGCGGTC-CAAG-AGCT TGGCC AGCTTCTTGAGACCGCC   AAAGGTTGTGCCCTA  83 153
 cpfrc_02070 2293349 .. 2293406 - -13.6   -4.2354   GAAACCGGAAAACAA GCTCACCGCCTTCGTGCCTGAAGATTCC ACAC AGA-TAG-CAGGCAGGAAGGCGGTGAGC CGTTCTATTCTTAAG 100 43
       gntR3 NONE
        nagK NONE
        nanE NONE
        nagA NONE
        nagB 2281645 .. 2281671 -  -8.8   -4.5366   CCAAAAAACTTAAAA         TAGGAGAGAC ATTACTA GCCTCTCCTA         CGTTATTTTCTCCGC  83 117
 cpfrc_02059 2277889 .. 2277920 - -16.6  -5.29782   GATACCGACAAAAAA      GCGGGGTGCCGTGA AATA TCACGGCACCCCAA       CAACTCATGTCTTAG 100 37
 cpfrc_02056 NONE
 cpfrc_02055 2273187 .. 2273200 -  -2.3  -2.82623   TGCGTTTTATAACTA               CGGCA ACTC TGCGG                GCGGTTGTTGAGCCT  40 62
 cpfrc_02054 NONE
 cpfrc_02053 2271244 .. 2271300 -  -3.4  -4.55118   CAAGGGCACACAAAA GCCTCACAAGTAGAGAGTGATCCCTTGCA GAGT TGCA-GGAATC--TC-C-ACCTGTGAGGC CAAGGGAGTTTACGT  66 55
 cpfrc_02052 NONE
        leuS 2266853 .. 2266869 -    -3  -4.59109   TATAGTTTTCAAAAA              TGTAGC CACAC ACTACA              TAAGTTTTCTATAAA  65 352
 cpfrc_02050 2264069 .. 2264094 - -10.5   -5.0916   TCCTGAATACAAAAA         CTGGCAGAG TGTGCAAG CTCTGCCAG          TTGATTAAAATCCTA 100 46
 cpfrc_02049 2263421 .. 2263439 -  -3.9  -4.36485   ACAAAACAGCTAAAA             GACGATA GAAAG TATCATC             TCTGCAAGGATGCAC  65 1
         dps 2260449 .. 2260486 - -15.7  -5.19879   GGTTAAAGAGAAAAA   GGGTGTTCTCCCAGCACA GAA TG-GCTGAGGGAACACCC   TTGAGAACTACTCTT 100 40
 cpfrc_02044 2258212 .. 2258225 -  -8.1    -4.386   CAACGCTCTACAAAA               CAGGC TGTG GCCTG                GTCTATTGGCACCCC  83 332
 cpfrc_02039 NONE
        pbpC 2252618 .. 2252665 -  -3.6  -3.88232   CTCCGCATACAACAA CTCTCCACCGC---GATCCGCAC TCATT GTGCAAACCATTGCGATGGAGAG TTATTCCGCGCACTA  55 161
 cpfrc_02037 2250917 .. 2250934 -  -4.1  -2.71483   ACATGGTGGCAATCA             TGATGGC AGTA GGCATCA              GCTCTTCAGCTCCTT  44 23
 cpfrc_02036 2250670 .. 2250680 -  -5.4  -3.76224   CCTGTAGTTAGCAAA                 CACT TTC AGTG                 CTTAAACCAACCTTG  59 95
        rpsF 2250135 .. 2250171 -  -9.5  -3.61398   TTTCTGCGCGAAGAA    TAATCTGCTCAGCAGCT AAC AGCTGCCAACCGGATTA    CTTATCGCCACGCAG  74 23
         ssb 2249402 .. 2249415 -  -4.5  -3.08813   CCCGATCCCAAGAGA               CCGAA GCGG CTCGG                TGAAGTGTGATTAAA  49 66
        rplI 2248806 .. 2248854 - -23.9  -5.22039   GTGAAATCTAAAAAA GCCTACGGGCCCCGTCCCATCCA TAG TGGATGAAGCGGGGCCCGCAGGT TGCTGTTGTCGTTGG 100 75
 cpfrc_02031 NONE
        dnaB 2244434 .. 2244448 -  -8.6  -3.02947   TATCCAGCACAGAGA               CCATGA TCA TCATGG               CGGGGTGCTGCTTGT  60 307
        trxA 2239831 .. 2239874 - -16.8  -3.58536   AAAGCCACCTCTAAA GCAAAAGGTCTGGCCCTCCG AATT CTGGGGACCAGACCTTTTAC TTTCTCAAAGAAACA 100 77
 cpfrc_02025 2238363 .. 2238409 - -13.9  -3.83323   CTCATAGAAGCGAAA GGGGCCCATACTCTCTCGCAG TGGAATT CTGCT-G-GAGTATGGGCCCC TTGGTTGCATTAAGG 100 70
       gntR2 NONE
 cpfrc_02022 NONE
 cpfrc_02021 2234295 .. 2234305 -  -6.8  -3.83844   CTCACTAATCAACAA                 CCAC TGT GTGG                 TGTTTGCCTCTGTGA  66 135
 cpfrc_02019 2226136 .. 2226164 - -14.6  -3.74462   AATCAGAACACATAA        TAGCCGGCCCCC GAAAA AGAGGCCGGCTA        TGCAAGCAAGACGCT  95 42
 cpfrc_02018 2225531 .. 2225557 - -19.5  -3.84712   TAATTCCATAGCAAA         GGGCGGACGAG GAGCA CTCGTCCGCCC         TTATTTTGTTGATCC 100 42
        mcbR 2223914 .. 2223926 -  -4.7  -3.79419   GCCGCGGAGAAAAGA                CGCGC TGA GCGAG                CTGCCGCACGCGCTA  58 84
 cpfrc_02014 NONE
 cpfrc_02013 2221493 .. 2221519 - -15.2  -4.52589   GGTCCTCACAGAAAA         GAGGCTGCCGAT GCG ATCGGTAGCCTC         TTTCTATATGTCGCG 100 55
        hrrS 2219584 .. 2219604 -    -4  -3.21416   TACTTTGAGCATTAA           GCCTCCGCA CGTA TG-GGAAGC            GCCACAGATACAGCT  48 1
        hrrA 2218554 .. 2218570 -  -8.7  -4.63218   TCTCTCGGAAGAAAA              CGCAGAA AAG TTCCGCG              AGGCAATCCGCCCGT  89 250
 cpfrc_02007 2215538 .. 2215553 -  -3.2  -3.31415   GAGCACCAAATTCAA              GGCAAA TTCT TTAGCC               ATTTTCCAGCGCCGG  48 20
 cpfrc_02006 2214053 .. 2214069 -  -2.9  -3.14132   CTTCTGGCGCACGAA              CTTGGGT CAA ACCCACA              TGACCTCATAATCAA  43 91
 cpfrc_02004 NONE
 cpfrc_02003 2212060 .. 2212073 -  -2.4  -4.08706   TTTCCAGGATACAAA               TTCC TTCTCC GGAA                AACCCACGGCCCACA  55 135
 cpfrc_02002 2210159 .. 2210169 -  -3.2   -2.8978   ACTTCCACAGCAAAT                 CCTC TAC GAAG                 GCATTGCCACTGGAG  43 66
 cpfrc_02001 2209855 .. 2209879 -  -9.9  -3.08679   CTTCCGGAGCCAATA          CGCTCCTGCAG GCG CTGCACGTGCG          ACTTTTCTATTGGAT  69 154
        msrA 2205945 .. 2205976 -   -16  -3.83998   GCACTCCATAGCAAA      GCCACCTCAACATC ATTG AACGTTGAGGTGGC       CGCAAGAAGGAATCA 100 45
        ldhB 2204608 .. 2204634 -  -7.8  -2.60615   ACCCGGCGTAAATAT         CGGCGATGAGCC CCC GGCACCTCGCCC         CTCGGTCATCCTTGA  54 156
         cdd NONE
 cpfrc_01993 2201429 .. 2201456 - -19.2  -3.97947   GCTACTTAGCACAAA        GCCGGGCCCTTC CTAA GAAGAGCCCGGC         CCTGCGCCCACTCAA 100 64
 cpfrc_01992 NONE
 cpfrc_01991 2199484 .. 2199498 -  -5.6  -4.96848   TGGCTCACAGAAAAA               CGCCAC CAT GTGGGG               GCAGAGCGTAGTGAA  78 72
 cpfrc_01990 2198338 .. 2198354 -  -2.9  -4.20516   TCCCGACTGAACAAA              TCCCGGC CCC ACCGAAA              CTCCATCAGGCAACG  59 45
 cpfrc_01989 2197796 .. 2197819 -  -9.6  -5.38839   CAGAGAAAAAGAAAA          CGGACAC-CCA CAG TGGAGTGCCCG          TTAAGGATGAGGCTT 100 40
        htaD NONE
        htaE 2194409 .. 2194439 - -15.5  -3.21747   TCATCGCAGGAGTAA       TGCCGTTGCGGTT CAATC AGCCGCAACGGCA       TTACTCATCTTAGGG 100 69
        pheA NONE
 cpfrc_01982 2189294 .. 2189313 -    -5  -3.07655   GCCCTGAAAAAATAT            TGTTCTTC CGAG GAAGAACT             CGTAGAGCAGGTTCG  50 235
        serS NONE
 cpfrc_01977 2185002 .. 2185041 - -13.7  -3.59202   CAGCGCCATACATAA  TGCCCAGGTGGGTAG TGGGAATAAG CTACCAACCTGGGCA   TCAAAGGCTAAAAGA  91 44
 cpfrc_01976 2184024 .. 2184072 -  -5.3  -4.86731   GCGGCTTAAAGAAAA TGCTTAACCGCGAGAACAGGCT TTAAAC AGCTTGTTCTCGCGGTTTT-CT TTTTAGAACCAACGC  78 28
 cpfrc_01974 NONE
 cpfrc_01973 2180464 .. 2180486 -  -4.1  -2.50816   CTCGCATGGATTAAG          CCGC-AGACT ACTT AGGCTAGCGG           GCCACCGACGCTGCA  44 19
 cpfrc_01972 NONE
 cpfrc_01971 2178567 .. 2178577 -  -5.4  -3.22298   TTTACGCATTATGAA                 CATC CGG GATG                 CATCTTTAAGCTCAC  52 82
         glf 2177279 .. 2177317 - -18.4  -3.17725   CCAAATGACACGCAA  GGGCCGTAAAGAAGCAG TTAGTT CTGC-TCTTTACGGCCC   TTGTTTTTATGGCGG 100 42
        glpT 2175604 .. 2175621 - -14.1  -4.73448   ATAGACAGTGAAAAA             GCGGGCC CTGG GGCCCGC              TTTAGGGATTAAGCA 100 34
        glpQ 2174381 .. 2174422 - -14.7  -3.22476   AGCATTTATCATTAA GTAATGCGGG-CCCATTTCA TTA CAAAATGAGACCCGCATTAC TTAATGTAGTGTTAA  91 62
 cpfrc_01967 2170966 .. 2170999 -  -6.7  -5.03314   GGCACCCTCAAAAAA     GCAAGGGCACAG-GCT GCG AGCTCCTCACCCTTGC     TTTCTTGTCTCAGGA  87 58
 cpfrc_01966 2169930 .. 2169949 -   -10  -2.60496   GCGCGGCGTAAAGAG            CTAGCCGC GGCG GCAGCTAG             TGTGACTCAGCTCCG  63 506
        glfT NONE
 cpfrc_01963 NONE
        ubiA 2165280 .. 2165317 - -14.3   -5.1971   AGCAAAAAGCAAAAA   CCGCCACCAAGC-AGTTC TAC AAACTGGCTTGGTGGCTG   TTACATCCCGATTTT 100 49
 cpfrc_01961 2162990 .. 2163001 -  -5.8  -2.84098   TCCTCGAACTAAGTA                TGCG GCGT CGCA                 GTTATCATGTGCACG  52 239
        cmtB 2161890 .. 2161916 - -13.8   -5.2015   GCAAGAACATAAAAA         TCCCCAGAGG CACAAAC CCTCTGGGGA         TACACAGCTTAGAAT 100 53
 cpfrc_01959 2160352 .. 2160363 -  -5.8  -2.65751   GCACGAAGACAATAG                GACC ACAA GGTC                 GTTTCTCAAGTTTAA  51 143
        cmtC NONE
 cpfrc_01957 NONE
        elrF 2156679 .. 2156704 - -14.1  -5.35224   TGCACAAAAACAAAA         GCTGGAAACCC CGTG AGGTTTCCAGC          TTTCTCATACTGCTC 100 43
       fadD1 2154412 .. 2154443 - -10.2  -3.55761   CAGTGATCGGCGAAA      TATCGGCACCCCTC GAAA AAGGAGCACCGATA       AGATTTACCTACGAC  77 178
       pks13 NONE
       accD3 2147914 .. 2147938 -  -7.2  -5.44198   AATAAATAAGAAAAA         TCCCCTG-GAC TTTC ATCACAGGGGA          TTTTTTCCTCTTATA  93 55
        pckA 2138393 .. 2138425 - -11.3  -5.40072   GTGGTCCTAAAAAAA      CCAGAACTCCCTTAA AAT TTCGGGGAGTTCCGG      CGCAAACAGCAAGAG 100 41
 cpfrc_01943 2136133 .. 2136152 -  -9.2  -3.34398   GGTGGCCCTCAAACA            GCTCGCCC CGGT GGCCGAGC             GTCCCTGGCCGAGTT  69 330
 cpfrc_01940 2132369 .. 2132383 -   -10  -3.15249   CACACGGCGCAGTAA               CGCTCA GCA TGAGCG               CGGATACCACCTATC  67 426
 cpfrc_01938 2128185 .. 2128197 -  -3.3  -4.03174   AAAGGCATTAAACAA                CACCA ACC CGGCG                TACCGACTCTTCAAA  58 5
 cpfrc_01937 2126286 .. 2126311 - -14.7  -4.68593   GGCAGTACGCAAAAA         TGCGCGCGGCC AAAG AACCGCGCGCA          TTCGCTTTTTCTTAA 100 37
 cpfrc_01936 2124474 .. 2124490 -  -9.5  -3.25192   TTCAATGGTAGAACA              TCAGCTT CCC AAGCTGA              ATACGCGGGTTCGAT  70 261
         dcd NONE
        udgA 2122291 .. 2122318 - -14.9  -3.63968   GCTGAAATGGCCAAA        GGCCTGCCATC CATCAC GACGGCAGGCC         TTCTTATTCTTCTCT  95 173
 cpfrc_01933 NONE
 cpfrc_01932 2120524 .. 2120537 -  -5.9   -3.5241   CATCGCGGAGAAATA               CGGCA TCAC CGCCG                CCACCGTGGGTGATC  57 428
 cpfrc_01928 2112874 .. 2112904 - -15.4  -3.53031   CTTATCTCAAAGGAA       GCCGGCACGTGAAG CAA CATCATGTGCCGGC       TCGAAGGTTTTAATT 100 39
        ureA NONE
        ureB NONE
        ureC 2110236 .. 2110269 -   -19  -4.57341   AAGTTCTGTTAAAAA     GGCGGAACCAGTGT GCGCTT ACACCGGTTCCGCC      TCATTCCTTAATTCC 100 92
        ureE NONE
        ureF NONE
        ureG NONE
        ureD 2107421 .. 2107452 - -18.8  -4.78848   CCTTTAAATACAAAA      TCTGGCGGGCAGCA TACG CGCTACCCGCCAGA       TATTCTCAGTGGCTG 100 82
 cpfrc_01920 2105879 .. 2105890 -  -2.2  -2.54276   ATCTCGAATCAAGAT                CCAC ATCT GTAG                 TAGTAATGATTTACT  39 36
 cpfrc_01919 NONE
 cpfrc_01918 NONE
       arsR2 2103359 .. 2103369 -  -6.8  -3.02144   CCACCGGGCGTAATA                 TCCG TGG CGGA                 ATCTTAGGCCTCACC  54 371
        pitB 2097630 .. 2097640 -    -4  -3.30203   CTATCAAGAAGTCAA                 TTGA ATT TCAA                 TATCATCAACTCAGT  50 174
 cpfrc_01912 2097361 .. 2097374 -  -3.7    -2.924   CAAGCCGTCATAAAC               CGGGC TCAC GCCTG                TTTGACCATAGCCAG  45 17
 cpfrc_01911 2095887 .. 2095927 - -12.1  -4.03234   CCTTCCTTAGAGAAA CG-CGTATAGCTCCGGTGC CAAAC GCAC-GGAGCTATACGTCA AAAGATGGGACTATT  95 40
 cpfrc_01910 NONE
 cpfrc_01909 2093868 .. 2093886 -  -3.1  -2.62244   TTGCGGAACAAAACC            GACCACGG TTCC CCG-GATC             TTAGAAAAGTCTTTC  41 26
 cpfrc_01908 NONE
 cpfrc_01907 2092648 .. 2092678 - -18.4  -5.52023   ACGACTAATAAAAAA       GTGTGGCCCTGG TTCCTCG CCAGGGCCACAC       TTTTATTTACATCTG 100 32
        srtC NONE
        spaD NONE
        spaY NONE
        spaE NONE
        spaF 2083582 .. 2083622 - -20.5  -5.00412   AAATACAAGCAAAAA  CCCGCGGCGGGCGCTTCAT TGA ATAAAGCATCCACCGCGGG  TTGCGCTCACTGCGC 100 50
 cpfrc_01900 2083401 .. 2083416 -  -3.2  -3.65199   AACGTTTTACCTAAA              GTTGAC TGAC GTCGAC               TCAATTTTACGGGAC  53 118
        dnaK NONE
        grpE 2080808 .. 2080846 -  -8.2  -3.92373   TATCTCACGCACAAA  GGGCGCGGCAGGATTCTC TTGTG GAAAAGCC--CCGCGCCC  TCATATGCACTTTCC  73 58
        dnaJ NONE
        hspR 2079050 .. 2079097 -  -7.3   -3.7511   GGGCGCATAACACAA GGCCCACCACTCGCACGCGAAT ATTGGGG ATT--C-TGCAAGTGGTGGGCC TTTGCTATGTCTAGG  67 36
        aldA 2075076 .. 2075095 -  -2.2  -2.99449   GGGGACACAACCATA            TTCAGTTA AAAG CAACTAAA             ATAAGCCCGTGGGAT  42 268
        adhA 2073809 .. 2073844 - -11.9  -3.38046   CCTGCACGGCAAAGA   CCCCACCG--CGGCCGG TTTC CCGGCCGAACAATGGGG    AATCCCCGGAGGGCA  80 98
 cpfrc_01890 2071458 .. 2071473 -  -2.4   -3.1585   CTAGTCAATGCAATA              CCGATC ACAG GGCCGG               TTACACCCAACACTA  43 187
 cpfrc_01889 NONE
 cpfrc_01888 2068873 .. 2068886 -  -2.3    -3.767   GATTGATTCACCAAA               GGTCA TTAG TGCCC                CTCCCCTAAGGTATT  50 17
 cpfrc_01887 2067545 .. 2067596 - -23.5  -3.01912   TTACATGCATATACA TAAAGCTCACGCCACAACCATATCC ACGA GG-TA-GGTTGTGGCGTGAGCTTTA TTATCTGTTGTTACT 100 36
 cpfrc_01886 2066639 .. 2066651 -  -4.8  -3.92746   GGTATCCGAAAAAGA                TGCC GATGT GGCA                GGCTACAAGCATACT  59 148
 cpfrc_01883 2063532 .. 2063561 -  -4.9   -5.0538   CCCGATCGTAAAAAA       CACGGCCG-ACGCA TGG TGGGTCCAGCCGAG       CAAATATTGCACTGC  80 311
 cpfrc_01880 2059641 .. 2059676 -   -25   -4.9725   ACCCGCACATAAAAA    GGGTGGTCTTCACGTT AGTT AACGTGAAGACCACCC     TTTTGCCCTCTCTAG 100 117
       clpB1 2053243 .. 2053282 -   -21  -5.53079   AAAAGATACAAAAAA  CTAGTTTCCGTGAGGC-CC TAA GATGCCTCACGGAAACTAG  TAAAAATTATCTCTT 100 32
        spaA 2049993 .. 2050035 -  -7.7  -2.66274   GTCTTCAGAACTAAG CCGAGAGTGGGAAGAGGCGA TTTT CCGCTTCTTCCCACCC-CAT AATCATTACTGACCA  58 103
        srtA NONE
        spaB 2048025 .. 2048040 -  -6.2  -3.59252   TCTGACTAAAGAACA              CAATCA ACTA TGATTG               ATAAATAATTCTTTA  59 96
        spaX NONE
        spaC 2044183 .. 2044218 - -17.1  -5.05301   AAACAATGACAAAAA    GAAAATGCTGGCCAG AATAAA CTGACCAGCATTTTC     CCAGCTAGTATTTTA 100 52
 cpfrc_01869 2043637 .. 2043671 - -10.9  -5.79595   TGCCAAAATAAAAAA     GAATAGAAGATAGCC ATAAA GACCACCTTCTATTC     TTTTTCAGGGCCACA 100 387
        glpD 2041460 .. 2041492 -   -15  -4.84033   ATACAAAAAGGAAAA      CGCGGCACTATG TCGTCGGTT CATAGTGCCGCG      CGCGTTGAACCACTG 100 108
        sseB 2040300 .. 2040318 -  -4.4  -3.93868   CGGCGAAAAGAAATA             GCATGGCT TAA AGCCTAGC             GCGCATCCCCATGTT  57 21
 cpfrc_01866 NONE
        pyrE NONE
 cpfrc_01864 2037982 .. 2038003 -  -2.2  -4.36914   TCTTCTCGTAGAAAA           GCC-CGCCA CCAGC TGGTGAGGC           CGAACGGAACATCTC  61 69
 cpfrc_01863 2036782 .. 2036797 -  -4.7  -3.09415   GAGAAATCACACAGA              TTCGG GCATAA CCGAA               ACTATTCAAACTAAC  49 40
         fba 2035558 .. 2035584 - -19.6  -5.24129   GGCCGTTATAAAAAA         TATCCGGCCCAT CTT ATGGGCCGGATA         TTTACAATCTACGCA 100 51
 cpfrc_01861 NONE
 cpfrc_01860 2031574 .. 2031612 -   -19  -3.21064   TTGAGAAGGAACACA   CAAGGACGGCACACCCCA ATT TGAGGCATACCGTCCTTG   AATCTATAGGTTACT 100 36
       padR2 NONE
 cpfrc_01858 NONE
 cpfrc_01857 NONE
 cpfrc_01856 NONE
 cpfrc_01855 2028872 .. 2028885 -  -2.3  -2.52676   TAGCTCCTCAATCTA               CTCTG TTAC CTGAG                TAAATCTTAGCCTTC  39 32
 cpfrc_01854 NONE
 cpfrc_01853 2027383 .. 2027417 - -11.5  -2.57211   ATTCTCCGGGAGAAG    GCAGAGCGCGACCGCGC CGA GCGCGACCGCG-T-TGC    TCGCGCAATGGCAGG  68 309
 cpfrc_01851 2025231 .. 2025245 -  -4.2  -3.17319   GCTAATCGACGAAGA               CGCC TGGCTTG GGCG               CGCGTTACAGGGAGG  49 147
        purA 2023101 .. 2023129 - -13.2  -5.14894   AAAAAAGCAGAAAAA        GGGGCGAACCTC TAACT AAAGTTCGCCCC        TTGTTTCCTTAAGGT 100 41
 cpfrc_01848 NONE
 cpfrc_01847 NONE
 cpfrc_01846 NONE
       ccsB2 NONE
       ccsA2 2018093 .. 2018103 -  -6.8  -2.64616   CCCCTAGGCATACGA                 GTGG AGG CCAC                 CGAAGAAGTGGTTGC  53 3
 cpfrc_01843 2017516 .. 2017540 - -21.5  -3.23452   ACTGCTAGAACTGAA          GGAGGGCACCC ATT GGGTGCCCTCC          TTTTTATCCTTCTAA 100 29
 cpfrc_01839 NONE
 cpfrc_01838 NONE
 cpfrc_01837 2014594 .. 2014609 - -11.8  -4.79352   GCAGGCATAAGAAAA              GCGCCC CTAG GGGCGC               TTTTTCGTGGGCTCT 100 41
        purT 2012744 .. 2012756 -  -6.2  -2.72314   CATATAGAAGAATAT                GGCC CCAAT GGCC                TGACCAAAGCCGACA  51 230
         pta NONE
         ack 2006537 .. 2006565 - -11.8  -3.22388   GAGTGAATTGACTAA        GGACCCTGAAAC TCTGC GTTTCAAGGCCC        TCTATCTTTATGCGT  78 510
 cpfrc_01826 2001824 .. 2001842 -  -3.8  -2.71791   ACTGTTTGGTTAAAC             CGCATACT TCA ATCATGCG             CTCTAGTCTGTCACA  44 36
 cpfrc_01825 NONE
 cpfrc_01824 2000004 .. 2000034 - -13.4  -3.34398   CGGCCCGTGGAAATA       TGATTCGCCAGCTA GAT CAGCTGGCGAATGA       TTACAAAGAAAACTC  88 139
 cpfrc_01819 NONE
 cpfrc_01818 NONE
 cpfrc_01817 1994146 .. 1994169 -  -9.6  -3.56704   TGGTTATTAAATCAA          GCCGGC-GCTA TCG TAGCCACCGGC          ATCGTCGTGTTGGTT  74 196
 cpfrc_01809 NONE
 cpfrc_01808 1982875 .. 1982907 - -12.1  -3.60098   AGTTTGCACGGCAAA      GGCCCTGATCC GTCATGCTTTA GGATCAGGGCC      TCATGCTCAATTAAT  86 58
      groEL2 1978796 .. 1978827 - -18.8  -4.64676   TGAGGCCCAACAAAA      GGCCCGTCCCC-AAG CTT CTCCGGGGACGGGCC      TTTATAAGGCGCAAT 100 49
        porA NONE
        porH 1977827 .. 1977877 - -24.4  -3.01188   ATGAAAACGCACACA TAAAAGTCCCGTTGATCATCCCAA AAA CTGGGAGAATCAACGGGACTTTTA TTAACGCAAAGACTC 100 44
 cpfrc_01802 1976784 .. 1976832 - -19.1  -4.05788   GGCTCTTAAACCAAA GTTAAAGGTATGGGCGTGCAAAT AAT ATTTGCACGCCCATACCTTTGTT ATTTAATCCCCTATC 100 28
 cpfrc_01798 1968880 .. 1968900 - -15.5  -5.28414   GAATAAAGACAAAAA            GTCTAGGCC TTA GGCCTAGAC            TTTTTTATTTAGAGT 100 30
        dacB NONE
        mesJ NONE
         hpt NONE
        ftsH NONE
        folE 1962874 .. 1962884 -  -3.2  -3.62597   GTCAGCTCCGAATAA                 GGCT CAG AACC                 TCCGCACGGGAGGCC  53 1
       folP2 NONE
        folB NONE
        folK NONE
 cpfrc_01787 NONE
 cpfrc_01786 1960316 .. 1960328 -  -6.9  -3.96216   CGCTGATCGAAAGAA                CCGGC CTC ACCGG                TTGCGCTTTAACAAG  66 19
 cpfrc_01785 NONE
        panC 1958784 .. 1958810 -  -3.1  -4.42238   GGATCCCAAGGAAAA        GCCA-GAAATTA TCTT TAATTACTTGGC         CACTGACCAGGACCG  64 478
        betT NONE
        gbsA 1953299 .. 1953314 -    -4  -3.14132   TGCCGCTGGGAGCAA              CCA-CCA AGA TGGATGG              ATGCGCCGCTGTATA  45 380
        lysS 1949353 .. 1949408 - -17.1  -3.22475   GCCAGTCCCACAAGA TAGAGTTGGTCCCCTAAAAGCACCC GTTATG AGGCATTTTTAGGGGACCAACTCTC TAAAGGTTTTAGTTT 100 34
 cpfrc_01776 1948457 .. 1948480 - -13.2  -5.16133   AGCAGAATACAAAAA          TTCCGCCACG GAAA CGTGACGGAA           TTTCATATTAAAACT 100 51
       iunH1 1946454 .. 1946465 -  -5.8   -4.0825   TGTGTAATTAAAGAA                CGGA TTAG TCCG                 CTTAATCCGCAAAAT  66 27
 cpfrc_01773 1944981 .. 1945014 - -26.9  -4.42386   CGCGTACGCATAAAA     GTGTGCCCCGGTGTC ATAT GACACCGGGGCACAC      TGGTTTTTGTTTTAA 100 37
       clpB2 1941413 .. 1941424 -  -2.2  -3.13299   TTACGATACGTAATA                CCCA TGGT TAGG                 ATTCCTTGGCTTCCT  43 21
 cpfrc_01770 1941208 .. 1941236 - -17.5  -3.14587   GTTCATAAAACGATA        GTAGCGCCAGCCC AAA GGACTGACGCTAC        CTCACTTTTGTTACT 100 36
 cpfrc_01769 1939888 .. 1939907 -  -5.7  -2.62244   TCGCTGAACAAAACT            CAGACGG TTTTTT CCATCTG             CCCAGGTAGGCGCTT  51 39
         bca 1938295 .. 1938313 -    -3  -3.02511   GTCATCTGGGGAACA             TCGTGGCG TGT CTTCACGA             GTCTTTCTTAAAATC  43 33
 cpfrc_01766 1937499 .. 1937534 -    -6  -5.17353   ATAGCCATTAAAAAA    GTTCGCGACATCCAAG AAGC CCTGGATGCCGCGTTT     TAAGGATCGATACTA  85 38
 cpfrc_01764 NONE
 cpfrc_01763 1934239 .. 1934284 - -24.9  -3.51597   AATCGCTAACCATAA CGCGTAAGGGCTTCCCCACTA ATAA TGACGGGGAAGCCCTTACGCG TTTCTACTTAACTTT 100 43
        carD NONE
        ispD NONE
        ispF 1931543 .. 1931554 -  -5.8  -3.57263   ATGGTTACTTCCAAA                CCAC AGCC GTGG                 CCACCGCCGCCCGTC  59 3
        cysS NONE
 cpfrc_01757 1928766 .. 1928780 -  -6.4  -2.63913   TAGCACCCCAGAGCA               CTGGTC TCC GACCAA               AATCCTCACTATGCA  53 358
        lacI 1926777 .. 1926791 -  -7.8  -3.67597   CCGCTCACGGAACAA               CAGCAC ACT GCGCTG               ACGGCTGTCACCACC  65 445
        poxB 1918303 .. 1918316 -  -2.3  -2.79116   TCCATAGACAAAGAG               GCCCA AAAG TGTGC                TTTTACCGCCCAATG  40 192
 cpfrc_01747 1917220 .. 1917259 -    -5  -2.60075   TGCCTGGGAACCAAT  GACAGCAT-TCGAAGCATC GTC GACACCGCGATACGCCGTC  TAGCTAACTCCGTCC  46 80
        phoR NONE
        phoS 1909634 .. 1909651 -  -3.4  -2.93447   TGAACTGGTAGAAAT             TCACGG AGTCCG CCATGA              GGACTTACCACGACA  42 80
 cpfrc_01737 NONE
 cpfrc_01736 1905945 .. 1905955 -  -3.2  -3.77325   GAGAACGAAAACTAA                 CCAA TGA TCGG                 CCTTTCTACTGGATA  53 11
 cpfrc_01735 NONE
        purB NONE
        purC 1902683 .. 1902711 - -12.5  -4.89729   CATAAAACTCAAAAA        GGCGCTGTACC GATATCA AGTACAGCGCC        TTTTTTAGTTTTTAA 100 37
 cpfrc_01731 NONE
         gpx 1899300 .. 1899319 -  -7.2  -2.75727   TCAACAGCACACAAG            CTG-TTGGG AGA CCCAAACAG            TCACCGGCGAAAGGA  57 411
 cpfrc_01729 NONE
        purQ NONE
        purL 1895435 .. 1895471 - -11.6  -4.84311   TTGGACACAACAAAA    GTGGGCTCCCCTGGCA AAATA CACCAGAAGAACCCAC    CTGTTAGCTGTGTTT 100 40
 cpfrc_01726 1894617 .. 1894631 -  -4.2  -2.93623   GCGCCGAAAACACCA               CCGAGT CTG ACTGGG               ACTTCTAGCTTTTCG  47 62
 cpfrc_01723 NONE
        purF NONE
        purM 1889790 .. 1889833 -   -27    -3.551   CCGCAACTTATACAA TGCGAAGAGGCTCGGGAGGAA TTA CTCC-CCCGAGCCTCTTCGCA TTGCTTTTTATGTTT 100 40
 cpfrc_01718 1886920 .. 1886937 -  -9.9  -2.74012   TCAGGACGGCAACCA             CGTTGGT CTAG ACCAACG              TGAGTCCGGTTTCTG  64 308
 cpfrc_01716 1885399 .. 1885415 -  -6.5   -3.8211   TTTGAGGCACAAGAA              CGCAACG TTA CTTTGCG              CCTGGAGGATCTTGC  65 86
        mshD 1883534 .. 1883549 -  -2.6  -3.24575   TCTAAAAAACCAAAG              TGACGTG CAA CAC-TCA              TTTAGGTTAAATCCT  45 193
        pstS NONE
        pstC 1881111 .. 1881124 -  -8.1   -3.5365   TCAAAGTGGAGAGAA               CCCAC AGCA GTGGG                ATTAAAGCAAGAATC  66 146
        pstA 1880334 .. 1880353 -  -2.8  -3.00825   CTGATAAAAGAGAAC            CGGTTACGC GGA GCG-AACGG            AAAACTTTGATGAAA  43 9
        pstB 1879513 .. 1879532 -  -4.2  -4.00038   GATGACCAGCACAAA            GGTTAGCC TCAG AGCTTACC             CAAACCGACCGAAAA  60 21
 cpfrc_01709 1879065 .. 1879099 - -11.6  -5.26918   ATACCGCACAAAAAA     GCTTCCCAACTC GCGACCAAAAG GAGTTGGGAAGC     TTTTTATCTCTGTAC 100 51
        cat1 1874868 .. 1874895 - -21.4  -5.04597   ACGCAGATATAAAAA        GACGGTGCCCAC CACA GTGGGCACCGTC         TTTTAGTGATGACAA 100 49
 cpfrc_01701 1866929 .. 1866953 - -14.3  -4.15565   GCTAGCATCGCAAAA          CCCCCATCCTC ACT GAGGATGGGGT          TTTAATGGTGGCACG 100 327
 cpfrc_01700 1866467 .. 1866490 - -16.8  -3.77484   CACCAAAACGTTAAA          GGAGCAGTCG GGTC CGACTGCTCC           TTTTTTAAATCTCTG 100 43
        ramA 1863103 .. 1863130 - -17.2  -2.80821   CTTTTAAATAGACGA        CAAGGGTAAGAG TTTT CTCTTACCCTTG         TGTGTGATTATGAGG 100 47
        murA 1861179 .. 1861207 -   -14  -4.27297   AACACAACACACAAA       TCCCCAGG-TCAC AGCA GTGAACCTGGGGA        TAAGAAGCGTGCTTA 100 38
 cpfrc_01694 NONE
 cpfrc_01693 1851616 .. 1851651 - -16.3  -2.94924   CCTGCACGTATAAAG    CAATCTCGGGCCCAC ATAAAA GTGAACCCGAGATTG     TTATGTTTAAACGAT 100 40
         pgm NONE
 cpfrc_01689 1848555 .. 1848569 -  -2.8  -3.09933   GCTCAACTGATGCAA               TGATAC GTG GTCTCA               AGGAGGTAGAGAAGA  45 64
 cpfrc_01688 1847666 .. 1847696 - -11.9  -5.00846   CAAATACCACAAAAA      GACAGCGAC-CCTC TAAG GTGGCGTCGCTGTC       TTATGTGTTCAGCTG 100 44
 cpfrc_01687 1846827 .. 1846837 -  -5.4  -2.97188   GCACAGCATCAGACA                 GAAG GCA CTTC                 TCCTTCGGCTTCCAA  51 153
 cpfrc_01686 1846648 .. 1846685 - -20.8  -3.73859   GACCACAACATATAA   TGTGGCCCCTACCTTA ATCACA CAAGGTAGGGGCCACA    TCCACAGAGCAAGGG 100 1
 cpfrc_01683 1843476 .. 1843489 -  -4.5  -4.48713   TTCACCAATAACAAA               CACAC CACC GCGTG                CGTCGTCACGTGCAT  71 145
 cpfrc_01682 1842616 .. 1842626 -  -8.2  -3.17051   GTGGCATCAGTAAGA                 GGGG CGT CCCC                 ATGACCTGTGCGCCA  64 270
 cpfrc_01681 1841759 .. 1841786 -  -4.8  -4.86001   ACCATTTCATAAAAA        CAGG-GGGGACCT CAA AGGTGCACTCCTG        CGGGTGAGACGCACG  77 394
 cpfrc_01677 1838906 .. 1838923 -  -5.5  -3.85698   GGGGTGGCTTAGAAA             CAGCGAA CAAC TCCGCCG              TCTCCATCAACCATC  61 1
 cpfrc_01676 1838191 .. 1838201 -  -8.2  -3.14229   AGACCTGGAGGAAGA                 GCGC CCC GCGC                 TTCCCGACGAGGTCG  60 207
        rpmJ 1837147 .. 1837168 - -12.3  -4.41353   CCAGACATAGCAAAA           CGACCACCC CGAA AGGTGGTCG            TCTATAAAAAATATC  95 41
        nrdH 1836390 .. 1836420 - -15.5  -4.65895   GCTCTTATGTAAAAA       GCCCAAGCAAGAC CTGTT GTCTCGCTCGGGC       TTTCTTAGAAGTCTC 100 74
       nrdI1 1835862 .. 1835875 -  -2.3  -2.83012   AAGGCGAGTATTACA               TGGCG GGGA CTCCA                CGAGTCTACGGAAAC  40 56
        nrdE 1833546 .. 1833590 - -36.1   -3.3164   AACGCACGCTTATAA TAATGGGGATGGCCCCACCAC AAA GTGGTGGGGCCATCCCCATTA TTCAGTTAGAGCATG 100 31
       nrdF1 1831548 .. 1831588 -    -4  -4.48987   CCCTCATAAGCAAAA  CCGCCGCACAAGAG GAATCCCCTAAGA ATTTTGTGCGGCGG  TTTTCTAACTTTTTC  68 43
        ctaD 1829356 .. 1829383 -   -20  -5.18726   CGCTCACAATAAAAA        GTCGAGGCCTAG CTTT CTAGGCCTCGAC         TTAAGTCAGAGAGTA 100 58
        serB 1825327 .. 1825341 -  -5.6  -2.62263   ATGTGGGGTACATGA               CTGCCC CAT GGGCAC               GTGGACAAGGACTAA  46 222
        clpS 1821067 .. 1821080 -  -6.7  -3.28712   TTTTTCGCTTTATAA               GCGTT ATAG AACGC                ACCTGAGGGGCAAAG  59 55
 cpfrc_01661 1820412 .. 1820431 -  -4.9  -4.29738   CTACAGCTAGCAAAA            CCCTGGG AAAATG CCCAGGC             TACTGACAGTAACCG  64 74
 cpfrc_01660 1819501 .. 1819517 -  -9.5  -2.63079   TTTTCACATAAGCCA              TGCTAAC CCG GTTAGCA              AAAACTGGGTAACAA  66 83
        murI 1818566 .. 1818589 -  -4.4   -3.1505   ACGATTGCGTATCAA          GAGCGAGCGG AAGA CAGCCCGTTC           CGCTAAGTGGTATGA  48 44
 cpfrc_01658 NONE
         rph 1816989 .. 1817005 -  -2.3  -3.34962   TGTTAGATGCTATAA              GGATT CTCATGC AATCC              CCAAGGCCGCTTTTT  45 15
 cpfrc_01656 1816333 .. 1816365 - -19.3  -3.96531   GCAGATACGCACAAA      GCTCGGAACTAGTTC TTA GATCTAGTTCCGAGC      TTTAGCTTTCTAGCT 100 35
 cpfrc_01653 1814137 .. 1814157 -  -3.9  -4.13014   TTTAGACTTCTAAAA            GCACACGCT AAA AGTGCATGC            TGAATAGAATTAAGC  60 35
 cpfrc_01652 1812767 .. 1812815 - -15.4  -4.08767   TCCATGCTTGGAAAA GCTACTGAGAGACCCCCTAGCCC AAAC GGGTTAGGGGGTCTCTCAAC-GT ATTGCGAGCGCTATC 100 118
 cpfrc_01648 1809422 .. 1809439 -  -7.1  -2.64155   CTCGTCCCAAACGTA             TTTTTCC TACT GGAAAAA              GGGTAGTCTAGCTGC  56 33
         fas 1800070 .. 1800109 - -17.3  -3.25282   ATTAAGCAGCAGCAA  GGGCCTGCTTCACAGAG AAATGA CTGTGTAAAGCAGGCCC   TTGATCATGGGAAAT 100 40
        acpS 1799213 .. 1799260 -  -2.7  -5.03994   TCTGAGATACAAAAA TTCTCCGAGCAAGTTCCGGC GCTTCAGTG GCCGGA-CTTTCTCGACGAG TTCATTGATCATCTG  76 368
 cpfrc_01643 1797977 .. 1798013 -  -5.3  -4.96848   CCCTGCAGAGAAAAA   GCCATATCC-CACC GGGGTTAATG AGTGAGGATATGGC    TCATGGGTTACTGAG  78 68
 cpfrc_01642 1797390 .. 1797404 -  -7.1     -3.94   TGAATGGTTAAAGAA               TCGCG GGATA CGCGA               GATTGATATCGCGGG  68 209
 cpfrc_01639 1793813 .. 1793841 - -17.5  -3.92485   ACACGATAAACAGAA        GGCCCCGCAGTTC ACA GAACTACGAGGCC        TTGAAAACATTAGAT 100 35
 cpfrc_01634 1787970 .. 1788017 - -33.2  -3.28712   CTTTTGGCTTCATAA GTAATGCAAAGGCACGCTCACA ATAT TGTGAGCGTGCCTTTGCATTAC TTATTTAAAAGCCCC 100 43
 cpfrc_01632 1782464 .. 1782495 -  -4.6  -3.91897   TGGCGTATTCATAAA      CTTATATTAGACAA TTAA TTGCCTAATAAAAA       GGGTATATGCCACTT  59 81
 cpfrc_01631 NONE
 cpfrc_01630 1780743 .. 1780776 -  -2.2  -4.25873   CCCGTAGAAAAAACA     TGCCACCCCTTTGC GTAATT GCTCCGGGGCAGCA      CTATTTTATCGCTTT  57 31
 cpfrc_01621 NONE
 cpfrc_01620 1766518 .. 1766544 -  -3.7    -4.371   TCTATCAGATTAAAA        CACACACCAGCT TTTC ATC-GGTGTGCG         ATATTCCACAATATT  63 169
 cpfrc_01619 NONE
 cpfrc_01618 1765369 .. 1765379 -  -6.8  -4.07568   TCCGTGGTGGGAAAA                 CCGA GGT TCGG                 CAGATCCTAGGGGTC  70 86
 cpfrc_01611 NONE
         rpi NONE
 cpfrc_01609 1757735 .. 1757763 - -14.6  -3.49102   AGATTCTTGATACAA        GTGCCCACGCTT CTCGC ATGCGTGGGCAC        TTTATTTGTGCGTAA  93 52
         tig 1754358 .. 1754391 - -11.9  -4.53765   AGAGACAGCACAAAA     GACCTCAACGAGT ACTGAATG ACTCATTGAGGTC      TTTATGTTTAAGAGC 100 44
        clpP 1753612 .. 1753624 -  -3.3  -2.94924   GCCTTAGTTAGAAAG                CGGAC CTT GTGCG                GACGCAATCACGTGA  45 1
 cpfrc_01604 1752897 .. 1752934 - -16.4  -3.62096   CTCGATTATGGCAAA   GTCCCCGCAACACC AATAATTTAG GGCGTTGCGGGGAC    TTTTTCAAAGCTAGA 100 46
 cpfrc_01603 1750008 .. 1750021 -  -3.7  -2.70525   GTGCGTCAAACTAAC               GGCCC ATAC GCGCC                CAGCGCCTACTATCT  42 78
        clpX 1748587 .. 1748613 - -16.7  -4.71061   ATCCATAGCTAAAAA         GCGGTTCCACT GCCCT AGTGGAACCGC         TTTTGTTTAATTTTT 100 39
         mdh 1746224 .. 1746241 -  -7.7  -3.09681   GAAAACGCTATGGAA             GAGCTAC TTCA GCAGCTC              GGCAACAGCCGCGCG  62 11
        valS NONE
        folC NONE
 cpfrc_01597 1741300 .. 1741335 - -14.1  -4.44915   GAATGATGGAGAAAA    CCCCGCGGTAGAAACC TGCTT GGTTTCC-CCACGGGG    GTTAAAGATGCTGAG 100 27
         ndk 1739786 .. 1739824 - -10.5  -4.08394   ATATGCCCTCCAAAA  GAACGAA-GAACCGGC-AC AGA GTAGCCGGTTCTTTCTTTC  CAGACGCTAAAGCCT  85 57
         rne 1735147 .. 1735158 -  -4.4  -3.89822   GAGTGAGGCGATAAA                TCGA CCTC TCGA                 TACAGGACATACGCA  57 107
        rplU 1734685 .. 1734695 -  -2.4  -4.25104   CCTCCTTTAGGAAAA                 TGCG AGC CGCG                 AGGCTTACTTGATAC  57 30
        rpmA 1734284 .. 1734317 -  -8.2  -5.68438   TGAGTAAAGAAAAAA     CCTGACCGCA-GTGC ATGGA GCAGATGCAGTCAGG     TGAAGATAAAGTTGT 100 102
 cpfrc_01590 NONE
        proB 1730887 .. 1730897 -  -2.4  -2.57501   TCCTAGGAAAGATAG                 GCCG AAT CGGG                 TCGATAGTCACAACA  38 450
 cpfrc_01586 NONE
        proA NONE
        nadD NONE
 cpfrc_01583 NONE
        gpmB NONE
 cpfrc_01581 NONE
 cpfrc_01580 1723220 .. 1723238 -    -3  -3.28924   CACGCTCCCCGATAA             GGCCTCAA ATT TTCTGGCC             CCAATTCCCTTGACG  47 62
 cpfrc_01579 1721507 .. 1721525 -  -3.1  -3.33525   CCCACGCAGACAATA             GTGCC ATAGCGGCG GGCAC             TGTTGCTCAGAAGTG  47 32
        holA NONE
 cpfrc_01577 NONE
 cpfrc_01576 1719388 .. 1719433 - -20.8  -3.18383   AGTTCTACGCACGAA TAAGCGCCCGGTA-TCTGAAG TTTTG CTTCAAAATACCGGGCGCTTA TTCGTGCAGAAACAC 100 65
 cpfrc_01573 1716157 .. 1716197 - -18.5  -4.44667   GTGGGGAATAATAAA  CGAGTTCTCCCGATACA GGGGGTA TGTGTCGGGAGAACTCG  TGCGTGTTACAGGCG 100 45
 cpfrc_01572 1715518 .. 1715531 -  -3.1  -2.73483   AGCTTAGCGCAAGCA               CAGGT GTGC ACCTA                ACCCGGATTCAGACC  41 23
 cpfrc_01571 NONE
 cpfrc_01570 NONE
 cpfrc_01569 NONE
 cpfrc_01568 NONE
 cpfrc_01567 1709381 .. 1709399 -  -6.6  -3.14211   AGGCTTGTCTACTAA             TGCCCCGA CTA CCGGGGTA             TTACTTACGTAGGCG  57 185
 cpfrc_01565 1706319 .. 1706332 -  -3.8  -2.78813   CTGCAGCGTAATAAG               GCCA AGGAGG TGGC                GGCGTGGGCGCAGGA  43 446
        pipB 1704680 .. 1704703 -  -6.6  -2.95527   AATAAGTTTAAACCA          CGCGGGCCAC ATTA GTGATCCGCA           ACCTTAGTTTTGAGG  55 13
 cpfrc_01562 NONE
 cpfrc_01557 NONE
 cpfrc_01556 NONE
        ectP 1696169 .. 1696218 -  -7.8  -3.68351   TGGGCATTACGCAAA GTGCCCCACCACCGGGCGCGTTG GCTGG CAAC-CACCCGATCCTGAGGCTC CTCTGCAGTTTAACG  65 104
 cpfrc_01549 1690026 .. 1690052 - -12.3  -3.65542   GCCATTCGCAAAAGA        TGCGCCCCACCC AAAA GGG-GGAGCGCA         GGCCAAGAGAAATAT  88 50
 cpfrc_01548 1689106 .. 1689122 -  -2.3  -3.06261   TTCCAAGCTCTAACA              TCACA GCCCCCT TGTGA              TTTCCTTCAAGATTT  42 9
 cpfrc_01547 NONE
 cpfrc_01546 NONE
         idi 1686924 .. 1686948 -  -4.3  -4.68424   TAACGCATGCAAAAA          GCACCGA CCTTTATGGCT TCGGTGC          TGTTGTAGGAGTCAA  71 45
         dcp NONE
 cpfrc_01542 NONE
 cpfrc_01541 1683060 .. 1683087 -   -20  -3.91897   CCGCGGATTGATAAA        GGCCCATTTCCC CGTG GGGAAATGGGCC         TTTATGCGCAACCTA 100 38
 cpfrc_01539 1678791 .. 1678830 - -20.3  -5.38958   AGGCAGAAATAAAAA  TCGCCCCTTTTCCTTTA AAGCTA CAAAGGAAAAGGGGCGA   AAACGCCTCTAGCGC 100 34
 cpfrc_01538 NONE
        hemN NONE
        hrcA 1675498 .. 1675525 -  -2.6   -2.7747   GAAAAAGGAAACCGA        CCCACGGGAGCA AGGA TGCCTCCGTAAA         AGGCGCTCACTCCCC  42 59
 cpfrc_01535 NONE
 cpfrc_01534 NONE
 cpfrc_01533 NONE
 cpfrc_01532 NONE
 cpfrc_01531 1670333 .. 1670359 -  -4.4   -3.0318   TAACAGATTACAAAC         TTGTTGTACCCC CGA AGAGCACATCAA         TCCGTGGCTGAGTCT  47 69
        pdxY 1669381 .. 1669410 -  -4.9  -3.31853   GAAATCCAAAGTTAA       TCTCTCCCCATAG TAAG CCATAGGGCGAGC        CTTCCTACACTACGA  52 59
         era NONE
        recO NONE
 cpfrc_01527 NONE
 cpfrc_01526 1665807 .. 1665844 - -16.3  -3.34236   AAACTCAGCGCATAA   CCTCATGAGGGGCGGCA AGCT TGCCGCCCCTCATATCG    TTTTATCCTAAAGCC 100 28
        glyS 1662848 .. 1662858 -  -6.8  -2.76093   AATTCTAAGAGACGA                 GGCT AGC AGCC                 AAGCAAGCGTGCTGC  54 17
 cpfrc_01522 NONE
 cpfrc_01521 1661573 .. 1661591 -    -3  -4.62069   GCCGCACTGGAAAAA             GCTCAACG CGA CGTAGACC             GCTACCAGCAACGCA  67 257
 cpfrc_01519 1658739 .. 1658749 -  -5.4  -3.04461   CATCGACGGGCAACA                 TCCT CCA AGGA                 ATACTTATACATTTT  51 30
         dgt 1656988 .. 1657016 -  -5.9  -4.77896   CAAGGAAGCCAAAAA        GACCATCAGCACG ATC CTTTCTGGTGGTC        CCTTCCCGTATCCCG  78 496
        glmS 1654624 .. 1654656 - -15.7  -3.44229   ATCTGAGTAGCACAA      TGCCCAGCTCGAAAA AAT TTTCCTAGCTGGGCA      GCGGCTATAAAGACT 100 72
        dnaG 1652612 .. 1652647 - -10.4  -4.72497   CAGCTAGCAATAAAA    CCACGACAGAGACGCT ATTA AGCGCTTACGTCGTGG     TTTTACATTTATTGA 100 34
 cpfrc_01511 NONE
 cpfrc_01510 1649133 .. 1649152 -  -7.2  -3.23274   CGTTTCACAACTCAA            CGCTGATA CGCA TATCAACG             TAAGACGGGTTTCGT  60 164
 cpfrc_01509 1648726 .. 1648738 -  -5.5  -3.35679   GCCCCTGACGCAGAA                CGCTG ATT CAGCA                GAGCACTGATTCAGA  54 36
 cpfrc_01506 1646507 .. 1646541 - -17.9  -3.54424   CTTGATTGCGCTAAA    GGCCGGTGCCC-GCAC TTAT GTGTAGGGCACCGGCC     TTCGGTGTTTTTAGA 100 52
 cpfrc_01504 1642945 .. 1642989 - -13.7   -4.0044   AACGATGACCATAAA TACATAAGCGGCGACTCCT ATTTTTA AGGAGCCGCCGCTTATCTT TGTGCGCCCTGACGG 100 174
        cobD 1641403 .. 1641418 -    -6  -3.29144   CCATGCGCGCCATAA              CGAGGG AATC CCCGCG               ACGCCACCGCTCACA  54 497
        cobC NONE
 cpfrc_01498 1637354 .. 1637365 -  -2.2  -2.81547   GCCCGACAGCAACGA                GCTC AAGC AAGC                 TTTTGATCTTAACCT  40 122
 cpfrc_01497 NONE
 cpfrc_01496 1634982 .. 1634996 -  -5.7  -5.75342   CCTTTTTAAAAAAAA               GGATG GCGAT CATCC               ATCTGGACGTACCAT 100 439
         rnr 1633088 .. 1633105 -  -5.5  -3.29471   TGTGCATGAGATTAA             GGGACCT GACA ACGTCCC              TTCTCTGTCTGAGGC  52 377
 cpfrc_01492 1631486 .. 1631496 -  -6.8   -4.8048   CGCTTATATGAAAAA                 GCAC TGC GTGC                 AGAGCGCAAGGGAAA  81 290
       glnA1 1627479 .. 1627498 -  -4.2  -2.73243   AGCTATGTCTTAAAG            CTACGGAA GGAT CCCCGCAG             TGATTAGTTTTCTAG  44 29
        glnE NONE
        hmuO 1623394 .. 1623404 -  -2.4  -2.55017   CAAAACAATAGACAT                 GGCG ACG CTCC                 TTACTTCATCGTTTT  39 104
 cpfrc_01486 1622634 .. 1622652 -  -7.4  -3.14931   TCTATGCCCTATGAA             CTGCCG CTTAACC CGGCAG             GACCCCAAGCGACCA  57 506
        thrC 1620572 .. 1620594 -  -2.6  -4.13945   ATGTTTAGGTGAAAA           CCGACGAT ATTTACA ACCGGCGG           TTTTGAACAAGTTAT  59 47
 cpfrc_01483 1620338 .. 1620354 -  -5.8  -3.64822   AGTCCTTTATCTAAA              GCGAAG GTTCT CTCCGC              TGTGAGTTAATCCCC  61 32
 cpfrc_01482 1619746 .. 1619756 -  -2.6  -2.77962   CGCCAGAGTTCAAAT                 TATT AGT AATA                 CTACCCCCCCAGAAA  42 49
 cpfrc_01481 1618306 .. 1618318 -  -9.1  -2.50545   GCGCTACAAGAAATC                CCGCT AGA AGCGG                CCCTCTAGCCTTCCC  63 54
 cpfrc_01480 1617609 .. 1617653 - -13.8  -4.62904   AAAGACTTTGAAAAA TGTGTTGCTGAATGCTGTAT CCCTC ACCCAACATCCAGCAACACA TCCCTGATTTCCACA 100 148
 cpfrc_01479 1616015 .. 1616053 - -30.5  -4.60797   CTCTTATACATAAAA   TCCCCGTGGGGAGACGC GGCAA GCGTCTCCCCACGGGGA   TTGAACTTTGTGGGT 100 43
        htaF 1611955 .. 1611970 -    -9  -2.79135   ATAACTTTCAATAAG              GCAAGG CAAG CCTTGC               TCTCTTCGTAGACGT  65 174
        htaG 1610821 .. 1610871 - -23.4  -4.15006   ATAGCTACGCTAAAA CCGCTCCCCACTAGTTGGTCTGAG AAA CAGACACCAACTAGCGGGGAGCGG TTCTACGATCAGGGA 100 176
 cpfrc_01475 1610664 .. 1610677 -  -5.3  -2.88366   GCTTGAATGAACAAT               GTATC CCTC GATAC                TAGAATTCCCAGTCC  49 84
 cpfrc_01474 NONE
 cpfrc_01473 1607966 .. 1607982 -  -5.1  -5.31275   GCCCAGCAGAAAAAA              CAGCTTC AAA GAAGCTC              TTGTAAAAGGACTGA  85 460
 cpfrc_01471 1606781 .. 1606791 -  -3.2  -3.57144   CCCCTCATTGCGAAA                 GATC TGT GACC                 AGCGGGTGCCGTCAG  50 88
 cpfrc_01470 NONE
 cpfrc_01469 1606036 .. 1606046 -  -5.4  -3.45737   GAACCAGTATTAGAA                 GATC ACC GATC                 TACGCAGAATTCGCC  56 290
 cpfrc_01468 1605437 .. 1605457 -  -4.8  -3.99806   AGAATCGATGAGAAA           GTTGAAACC TACC GGTT-CAAC            CAGGCTATCGCAGAC  62 244
 cpfrc_01456 1593835 .. 1593845 -  -4.6  -3.08679   CCTTCCTATGCAAGA                 CCAG GAA CCGG                 AACTGGCTGGGGTGG  49 85
 cpfrc_01455 NONE
 cpfrc_01454 NONE
 cpfrc_01453 NONE
 cpfrc_01452 NONE
 cpfrc_01451 NONE
 cpfrc_01450 1591400 .. 1591452 -   -12  -2.96444   GCTCCTAAGAACAAG GGTGCTGGGAGGATGCCACAACCCA GAAG CGGGC-ATGGTTTCCTCCCAGCACG GGTGAGGGGTTAGTG  81 35
 cpfrc_01449 NONE
 cpfrc_01448 1590303 .. 1590325 -  -6.2  -2.82623   GCCGGTGGATAAGGA           CCTCTACGAG CTA CCCCCAGAGG           AAGCAACAAGCATCC  50 412
 cpfrc_01446 1588365 .. 1588394 - -15.2  -4.62441   TTTTACACAAATAAA       GGCTTGATCACT GTTTGT AGTGATCAAGCC        TTTTCTCGTAGTTTT 100 45
 cpfrc_01442 1584743 .. 1584777 - -13.8  -3.65046   GCCCTAGCCGAACAA    CGCCACCATGTCTTT TAGAAC AAAG-CATGGTGGCG     TTGTTGTTTTGTTTA  93 45
 cpfrc_01437 1576990 .. 1577003 -  -3.1    -3.794   GGCGAAGCGATCAAA               TCC-CC AGT GGCGGA               TATTCGTAACATCAC  54 353
        ilvE 1574431 .. 1574468 -  -8.5  -4.87893   AAGTCGAAGTAAAAA   GCCATAAGCCGATTT GTTTCTCT ACAGCGGCTTATGGC    TTTAAAAAATTCTCA  88 52
 cpfrc_01430 1570164 .. 1570210 - -19.8  -2.70946   GGCGCCGAGAAAGAG CAAAATTCCTCCGCATCATG GATAGAT CATGATGCGGAGGAATTTTT ATAATCGACAACGTC 100 70
        ctaC NONE
        ctaF 1565943 .. 1565998 -   -20  -3.63922   ACTGTTTTTAAAACA GATAAAAAATCCGATCCCCACCGC-CA TAA TGAGAGGTGGGGATCGGATTTATTTTC TAAGGAAAGTGCGTT 100 74
        ctaE NONE
        qcrC NONE
        qcrA NONE
        qcrB 1560991 .. 1561033 - -20.1  -4.72029   GGTAATCCAAGAAAA CCGAAAAGCAGCCTTCCTG CTTAT CAGAAAGGCTGCTTTTCGT ATTCGAGAACGTTTT 100 47
 cpfrc_01422 1559602 .. 1559639 - -22.3  -4.39318   TAAGCAAAGTGAAAA   TAGTGAAGGTTCGGCAC CGTT ATGCCGAACCTTCACTA    TTAACCACAGGTCTA 100 42
 cpfrc_01421 1558448 .. 1558463 - -10.4  -3.42503   CCTGAATAGTGAGAA              CCCGAC GATC GTCGGG               AATGCAATGCAAATG  75 42
       pimB' 1557253 .. 1557271 -  -5.2  -3.86944   CGCATAACTAGCAAA             GTATAGCG AGC CGCTACCC             CAATATCACATTCAC  61 43
         glk 1556220 .. 1556231 -  -4.4  -3.56704   GGGCTATCAAACCAA                TTGG CGAG CCAA                 ATCAGATACCCCGAT  52 5
        plsC 1555295 .. 1555317 -  -3.3  -4.38116   TCTACAAAAAGCAAA          GCGCTGGCCA CGAC CGGCT-GCGC           TTTTTAGAATTAGCT  63 156
 cpfrc_01417 1553845 .. 1553857 -  -4.8   -3.7948   GTAATACGCATCAAA                GAGG AAAAG CCTC                AACGCGCATTGTCTG  59 98
 cpfrc_01416 1553221 .. 1553249 -  -7.7  -4.07687   AGCGCGTCGGCAAAA        CATAAAATTCT ATCTTTG AGAATTTTATG        CAGAAATTCTACCCC  73 75
        aroG 1551697 .. 1551736 - -26.8  -4.58395   TTTAGTGGGGAAAAA  CGTCTCGCTTCCTTGAAA AGCT TTTCAAGGAAGCGAGACG   TTTTCTATGTCATAA 100 74
 cpfrc_01413 1548490 .. 1548500 -  -5.4  -3.36749   TAGCGGCAACACTAA                 GGTT ATT AACC                 CACTCGCTTTCCCCT  53 486
        metF 1545134 .. 1545145 -  -5.8   -3.2822   AAACAAAGCGATCAA                CGCT AATT AGCG                 CACTGCATCATGCCC  57 20
 cpfrc_01408 NONE
 cpfrc_01407 1543356 .. 1543377 - -15.9   -5.4251   CCCATACATAAAAAA           TCGGCCACC CAAA GGTGGCCGA            TCTTAAAAATAACTA 100 38
        mraZ 1542343 .. 1542353 -  -2.4  -2.87211   AGCGGGGTGTACACA                 GAGC CCT GCAC                 GAAGAACCCACTCTG  40 126
        mraW NONE
 cpfrc_01404 NONE
        ftsI 1538437 .. 1538460 -  -3.2  -3.05844   CGCTTTAGCCGAATA          TTCACAAACT AACG AGCTTGCAAA           ACCAATTGGCCTTCC  45 10
        murE NONE
        murF NONE
        mraY 1534109 .. 1534124 -  -2.5  -3.63627   TCTTCATAGCTTAAA              CTCCC GCCAAT GAGAG               CCACTCACCGTAGAA  50 5
        murD 1532720 .. 1532732 -  -3.3  -2.50935   ACCTTAGCCATTAAT                CGTGA AGT TCTCG                CGCTATGGCCTCGGC  42 8
        ftsW NONE
        murG 1529841 .. 1529856 -  -2.5   -4.5442   TGGGGAATTACAAAA              GCTGA TGTTTT CCAGC               GTTTTTATTCAAAAA  63 112
        murC 1528306 .. 1528317 -  -2.2  -3.78034   GAGCTACAGCAACAA                GCAC TCCT ATGC                 TTCCCAAGACCGTTT  50 66
        ftsQ 1527430 .. 1527440 -  -3.2  -3.75332   ACGCCGCAAGGGAAA                 CGAC CAA ATCG                 CGACGTTGCACTGCA  53 271
        ftsZ NONE
 cpfrc_01393 1525280 .. 1525309 -  -2.9  -3.04144   GTGTGATGTGCAATA       CTCC-GCTTTTG CGATGTC CAAAAGCTGGTG       TTAGCACCTAAAGCT  43 134
 cpfrc_01392 1524704 .. 1524754 - -22.2  -4.76963   CCAGAGAATAGAAAA CCCCTTGCCTTATAGGATGGTT GGGACAT ATCCATCCTATAAGGCAAGGGA CTAAGAAAAGTTTCT 100 62
 cpfrc_01391 1524436 .. 1524450 -  -5.6  -3.09004   GGAGCCTGAAAATTA               CGAGAG AAG CTCACG               ATCATTTCCACCAAG  51 8
 cpfrc_01390 1522848 .. 1522884 - -14.4  -4.57482   GTACTGATAAAGAAA    TCGTGGCCCTCCAGCT CATTC AGCTAGGGGGCCACGT    GAACATATGCGTCTA 100 53
 cpfrc_01389 1522380 .. 1522395 -  -5.4  -4.39386   GTGAAACGAGGAAAA              CTACCA GAAC TGGCAG               CCCTCTATGTTCTAT  69 255
        ileS 1518985 .. 1519042 - -23.8  -2.59556   AAATATCACAGCAAC TGCCGCAGAAAATATCCCGAGCACAA GGAGTG TTGTGCTCGGGATATTTTCTGCGATC GGCTTTTACTAAGCC 100 34
        dinX 1517413 .. 1517428 -  -5.4  -3.14132   CCGGTGGTGGAGCAA              CCCTTG CTGC CAAAGG               TGCAATCAGCTCCAC  52 117
 cpfrc_01385 1515538 .. 1515577 - -18.1  -5.38839   GATATAAAAACAAAA  GCAATGTCGCCGCT-TCC TTGGT GGATAACGGCGACATTGC  TTTCTTGTACTTAAC 100 52
 cpfrc_01383 NONE
 cpfrc_01382 1512946 .. 1512957 -  -3.6  -3.48593   GACGCCCGCAGAGAA                GCGA GTCA CCGC                 AATAAGCGGCTGTTA  50 38
 cpfrc_01381 1512325 .. 1512341 -  -3.7  -4.15044   TTGTGGCGCAAGAAA              GCTAAAA AGA TCTCAGC              ACCGCATTCCTCTCA  60 44
        dnaE 1507674 .. 1507712 -  -8.2  -2.51312   AATTGAGCTAGCAAT  TGGGGCGAGTGCACA TCATTTTTCC TG-GCTCTCGCCCCA   CTTATTACCCTTCTA  60 38
        ilvA NONE
 cpfrc_01377 NONE
 cpfrc_01376 NONE
 cpfrc_01375 1504889 .. 1504916 - -18.6   -3.7791   TAATCAGGGATTAAA        GGGGACAGAAAC TTAA GTTTCTGTCCCC         TTTAGCCTATTGCGA 100 46
 cpfrc_01368 1497052 .. 1497077 - -16.9   -4.3586   TTAGGCATAGCAAAA         GGCTACCGCCC AAAC GAGCGGTAGCC          CAATATCCCATTCCA 100 104
 cpfrc_01367 1496305 .. 1496319 -  -4.2  -4.28254   TTCGAACACTTAAAA               GCCC TGGTTTC GGGC               TTTACGACGTCCCAC  66 73
        hisD 1493633 .. 1493643 -  -5.4  -2.80796   GGCGAGGACTCAAAT                 TTGC TCT GCAA                 TGAGGTTTTCAAATC  49 9
        hisC NONE
        hisB NONE
 cpfrc_01362 1491206 .. 1491219 -  -4.5  -4.34771   GAAAAGGCAGCAAAA               GCTGC GGCC ACAGC                GATAATTGTGGGTAG  67 314
 cpfrc_01361 NONE
        hisH NONE
        hisA 1488467 .. 1488479 -  -3.3   -2.6927   ATCGCTCATACAGCA                GCCAG TGC CTCGC                TCAGAGTAAAACGCC  42 3
        impA 1487660 .. 1487671 -  -2.2  -2.73681   GATCTAGGCTAAGCA                GACT ACTG AGCC                 AACTTTTTAACGAAA  39 32
        hisF NONE
        hisI NONE
 cpfrc_01355 NONE
       trpC2 1484645 .. 1484657 -  -3.3  -3.13908   AACCCAACTATGTAA                GGCAA ATG TAGCC                GTTTGCGTCATTCTT  46 39
         lgt 1483621 .. 1483645 - -12.9  -5.22289   CAGCAAACATAAAAA          GAGCAGCCG GATACGT CGGCTGCTC          CTCGAAAAAACTACT 100 44
         pyk 1481951 .. 1481979 - -14.7  -5.49729   AACCATTTAAAAAAA        GGGAAGGGATC TTTTACG GATCCCTTCCC        TTTTTGCACGCGTTA 100 45
 cpfrc_01347 1474651 .. 1474668 -  -3.4  -3.05463   ACGCTCCCTATCCAA             CTCGCT CCTATC AACGAG              GTCGCTTCTACTCAG  43 79
         gdh 1471681 .. 1471712 - -14.6  -5.50723   TTAGCAAAAGAAAAA      CGTGAAATCGCTGC ATAA GCAACAATTTCACG       TTAAATCCCGATAAC 100 46
         ald 1470118 .. 1470142 -  -2.1   -4.1023   AACCTCAAAGAACAA         CCTGG-CCGC GATATT GCGATCCAAG          GCTCACTCTCTGTAG  56 285
 cpfrc_01342 1468564 .. 1468578 -  -2.8  -3.43674   TTAAAAATAAAAGGA               GAAGAA TCG TTCATC               ATCGTCCCTTAAGTG  47 84
 cpfrc_01341 NONE
         rnc 1467308 .. 1467324 -  -5.2  -3.27298   TCTTTTAAGGATTAA              GAAAAC GTTGG GTTTTC              TTGAAGGAAAGTAAC  54 5
        fpg2 1466363 .. 1466382 -  -2.9  -3.33696   TTTTCGGCTAACCAA            CCAAAAA TATTTC TTTTCGG             AGGATCGTTAGGCTT  47 67
 cpfrc_01338 1464537 .. 1464548 -  -5.8  -3.87641   AAGATCCTTTATAAA                GCGT GGCG ACGC                 CTCTCTTCAACGTCA  64 131
        acyP NONE
         smc 1460470 .. 1460494 -  -5.7  -3.09766   TAGATACAAATTAGA          TGCAAAGGATC GAG GATACCCTGCA          CAAAGGCTTAATGCC  55 157
 cpfrc_01335 NONE
 cpfrc_01334 1456762 .. 1456798 - -10.9  -4.71186   ATCAGCAATATAAAA    CTCCGTAGGACGTAG GTTCCTG CCACGCCTTACGGAG    TTCTAACACGCTGCC 100 55
        ftsY 1454961 .. 1455002 - -12.4  -4.55689   AGGAGGCACACAAAA CCCCTTGTGGATGAGCAT TCTCTT ACACTCACACACAAGGGG  TTTTAGCTTGTTTTT 100 41
        glnB 1454354 .. 1454368 -  -2.8  -2.76815   ATTGCGCTGAATAAC               TGCACT TAG ACTGCA               TCAGAACCGCGCTCA  42 16
        glnD NONE
         srp 1450132 .. 1450144 -  -3.4  -2.72344   GGTCACTGGGAAGTA                CAGA CGCTC TCTG                CTTACGCATTAAGCC  42 217
        rpsP 1449577 .. 1449608 - -14.6  -4.99645   AGCGCATAAACAAAA      CCGCTTAAGATGAGC ACT GCTCA-CCTAAGCGG      TTTATGTGTTTAAAA 100 53
        rimM NONE
        trmD NONE
 cpfrc_01325 1447081 .. 1447095 -  -2.1   -3.4072   TATTTCCGATCATAA              GAG-CG AAAC CGACTC               AGCGGTGGAATATTC  45 88
        manP 1445033 .. 1445043 -  -6.8  -2.74799   CAGAAGCGGGTAAAC                 GGAG TTT CTCC                 TTTAAGAGGCACCTG  54 27
 cpfrc_01323 1442463 .. 1442475 -  -4.1  -3.62046   CGACTTTGTCAAGAA                GGTTC ATA AAACC                AATCCTTACGTTTAA  55 230
        rplS 1442077 .. 1442112 - -13.4  -5.48028   TAAACAAAAAGAAAA    GCCTCCAACC-GCATGA AAA CCATGCAGGTCAGAGGC    CCGAAACGCCGAATA 100 41
        lepB NONE
        rnhB NONE
 cpfrc_01319 1439666 .. 1439684 -  -3.1  -4.43859   GATAATGCGATAAAA             CCTGC ATTTTTTCA GCAGG             TAGGCAATAAAAAGC  62 402
 cpfrc_01318 NONE
 cpfrc_01317 1436194 .. 1436232 - -20.5  -3.06696   CCCTCCCCCAATAGA  CAAGGGCGGAAACTACCG TTAC CGGTAG-CTCCGCCCTTG   AATCTGACTCACCCA 100 270
        xerC 1434877 .. 1434889 -  -7.7  -2.99649   ATATGGTTATATAGA                TCCAG CCT CTGGA                AACAGATCAGCGCAA  56 423
        rpsB 1433438 .. 1433451 -  -2.3   -3.4252   CGCTATTCACCACAA               GGAGC CCCC ACCCC                GAGCATAAAGCCAAC  45 125
         tsf 1432395 .. 1432408 -  -2.3   -5.1166   GATTAAAAGCAAAAA               GACTC CCCT GCGTC                CTTATTTCCGAGTCG  73 121
        pyrH NONE
         frr 1430589 .. 1430625 - -12.9  -3.46873   TTAAAGTCAATAAGA    CGCGGAGGGCACACGCC TAT AGCGAATACCCTCTGCG    TAAGTTTTCCCCGTC  89 84
        cdsA 1429570 .. 1429604 -  -2.9  -4.14859   ATTAACAATGACAAA    GAGGGGACG-TGA-CTT ATC ATGATGATCGTCCCCTC    AGTCAGGCTAACTTT  59 39
 cpfrc_01308 NONE
 cpfrc_01307 1427691 .. 1427724 - -12.6  -5.36314   TAAAATATTAAAAAA     GCGATCCTACCT AATATCTGCA AGGTAGGATCGC      TTTTTTATGTTTTTG 100 89
         dxr NONE
 cpfrc_01304 1424131 .. 1424143 -  -5.5  -4.82901   CTCCTTGTACAAAAA                TGGGC TAC ACCCA                TCACAATGGGATAAA  75 148
        ispG 1422869 .. 1422926 - -13.9  -4.66833   TCTGAAGCCTAAAAA GAAAAATCCCTATAGTTTTATATCC-AC CGT GTCAGGCATAAAACTATAGGGAGTTTTC CGTTTTTAGCGGGTT 100 31
        pbpB 1420854 .. 1420866 -  -3.4  -3.22475   TTTACGGTTATAAGA                CATG CCTCC CATG                CTATCCCTTTAAGCG  46 94
        mapB NONE
        cobQ 1418330 .. 1418340 -  -4.6  -2.78384   GTCTTCGGCATCACA                 CGGC GTT ACCG                 CAGCAGCGGCCACAG  45 116
         mqo 1412382 .. 1412416 -   -13  -5.12916   TAGAAAATAACAAAA     CCTAGCAGTGCCTT TTTCATT AAAGCACCGCTAGG     ATTCGTTTTAAGACT 100 71
 cpfrc_01295 NONE
 cpfrc_01294 NONE
        cobO NONE
        cobB NONE
         ada 1407819 .. 1407838 -  -3.6  -4.03078   GGAGTAGATGAGAAA            GACATTCA CTAA TGAATACC             TTTTTCATCTAGCTT  58 67
        yciC 1406515 .. 1406525 -  -6.8  -2.78216   TATTCCCAGGAATCA                 CCTC GTA GAGG                 AAGCTCTACTACAAG  54 208
        cysG 1404401 .. 1404424 - -16.8   -3.9461   CTGCTCGAAGAACAA          GGGAGTGCTG CATG CAGCACTCCC           TTTAATATCTATACG 100 58
        proS 1401639 .. 1401659 -  -2.5   -5.1101   TTATGAGCTAAAAAA            GTATCAACA ACC TGTCGACGC            CCAGAGCACCGCTGA  74 223
 cpfrc_01284 NONE
        nusA 1399249 .. 1399299 -  -7.8  -5.17744   AGACAGGAATAAAAA CGCCCCTT-T-CCCGCATTGCAGACG CAT CGTCTAC--TGCGGCTATAAGGGGCG ATCTAAGAAAAACTA  90 38
 cpfrc_01282 1398581 .. 1398605 -  -2.7   -3.3782   GAGTTACGGAAGGAA          GTCTTAACCCC GGA GGGCTTACGTC          GACTTCCTACCTAAG  47 81
        infB 1395596 .. 1395637 - -15.9  -4.96646   TTATAGAAGCAAAAA GCGGCGCTGACCCTCAACA TCAA TGATGAGAATCAGCGCTGC  TATCTAATATTTATT 100 58
        rbfA NONE
 cpfrc_01279 NONE
        dinF NONE
 cpfrc_01277 NONE
 cpfrc_01276 1390524 .. 1390539 -  -5.4  -3.68222   CGCGAAGGGCAAGAA              GTAGAG ATTC CTCCAC               GTCCAGTCACCATTT  58 511
        ribF NONE
       iunH2 1387954 .. 1387967 -  -3.1  -4.86001   ATGACTCGATAAAAA               GAAAC TGGA GCTTC                TCCTTATCAAACCAT  71 156
        rpsO 1387575 .. 1387610 - -10.5  -3.15999   CTTGGACATAGCGAA    GCCCCGTGGTCTAAGT TTTAT AC-AAAACCACGGGGC    GACGGATAGCGTCGA  73 46
        gpsI 1385150 .. 1385184 - -16.7  -4.85396   AGAAGGATAAGAAAA     GAAGGTACTTAAGAC GATCT GCCTTAAGTACCTTC     AGATTAGTCTTCCTT 100 29
        dapB NONE
        thyX 1383445 .. 1383457 -  -4.8  -3.44158   AACCTCATTAAAAAT                CCGT GACGT ACGG                GCTAGTCGCCATGTA  52 5
 cpfrc_01268 NONE
 cpfrc_01267 1380293 .. 1380325 - -18.5  -4.48713   GCGAGGAAGAACAAA      GCGGGCAGCACCG TTATTTT CGATGCTGCCCGC      TTTTACTTTAAATAT 100 41
 cpfrc_01266 1379603 .. 1379617 -  -2.1  -3.05816   CCACCTTTTATTTAA               GTCCA GCCTA TAGAC               CTGACCTCACAATTC  42 18
        ftsK 1376121 .. 1376164 - -13.3  -4.86621   ACTTCCAAGGAAAAA GACACCTCCGGTCTCATTCG GTCAG CGGATGA-ACCGGAGGTCTC CCCCACTCCTAGAGC 100 258
 cpfrc_01264 1374978 .. 1375028 - -20.8  -3.59698   GCAGCTTATACATAA GACTCCGTTGCGACCATAGA-GA CACTAC TCTTCTATGGTTGCAACGGAGTC TTTTCCTAATGGCGC 100 79
       pgsA2 NONE
 cpfrc_01261 NONE
        clgR 1372973 .. 1372989 -    -3  -3.49653   ACCAGGCGGAGATAA              GACTAA GAAAA TCAGTC              TTACTTACACGCGGG  49 30
 cpfrc_01259 1371964 .. 1371993 - -12.3  -4.90381   CTTAATACAACAAAA       GGTACAAGTCC GGCCACGA GGACTTGTACC        TTTTCTCATAACGAT 100 53
 cpfrc_01255 1369683 .. 1369696 -  -3.1  -3.18945   CCCACCGAGAATACA               CAAAC AGAT GTTCG                ATAGGCAAACTGATC  45 71
        recA NONE
        recX NONE
        miaB 1366148 .. 1366164 -  -5.1  -3.14132   GCTTTGGGTTAGCAA              CCACAAG CAT CTTTTGG              TGCGAGTTTCTGAGC  52 2
 cpfrc_01251 1365372 .. 1365387 -  -2.5   -4.4009   GTGCATGGGAGAAAA              CCTAG TGTAAG CCAGG               ACTGAAGCTACTCGC  61 33
 cpfrc_01248 NONE
        miaA NONE
        dapF 1359984 .. 1360001 -  -4.2  -3.08996   CAGCGCCACCTAACA             GGTTTA TGAACT TAAACC              GCGGGTATCCAGCTG  47 11
        hflX 1356696 .. 1356727 -  -3.6  -4.15044   CTTTTCTCCAACAAA      GTGGGGGCACCA TGAGCATT TTTCGCCCCCAC       CTCGGATTATTAGGC  60 35
 cpfrc_01242 1355316 .. 1355367 - -22.5  -4.84359   GCATCCCGAGAAAAA GAAGAATCCCGTGTCCCGATCAG AGTTCA CAGATCGGGACACGGGACTCTTT TAAAATCGTGCTGTT 100 25
        ptsI 1346796 .. 1346836 - -25.5  -4.56969   AACTGCATAAATAAA  CGCCATGCGGGCGGCCACT TTA AGTGGTCGCCCGCATGGCC  GTAGCTCTATGTGAG 100 46
        divS 1344263 .. 1344287 -  -4.3  -3.34962   CCCTACATTCGATAA          CCGTTTAACTA ACG TAGTTTAAAGG          CTACCGCACCAACCC  50 88
        nrdR 1343634 .. 1343647 -  -3.1  -5.31275   GCTTAGCACAAAAAA               TCCAA AAAT CTGGA                CAAGGAAAATCTGCT  84 160
 cpfrc_01229 1338450 .. 1338489 -  -9.3   -4.4458   CATAGATACAACAAA  GGTGCTGGGCAGCGA GTACTATATG TCGCTGATCAGCACC   TTCTAATTCTATCTA  83 52
 cpfrc_01227 NONE
 cpfrc_01226 1336483 .. 1336538 -  -2.6  -4.65895   GCTCTTATCTAAAAA TGGCCCGGTCTCCATCTCTCTATACAA AAT TCCTATACAAAGAATGA-ACCGGGCCG ATTACGCCTTTTAAC  65 73
        ahpD 1335844 .. 1335884 - -19.3  -3.85698   GTGTTGCTCTACAAA TGCGTAGTGCCTAG-GAC TTAATC GTCTCTAGGCACTACGCA  CATCTAATACTTTAT 100 61
 cpfrc_01221 1330600 .. 1330616 - -11.5  -2.82933   GTCTAAGTTAGGAGA              GCGCGCC CAT AGCGCGC              CCAAATAACGGACCT  76 73
 cpfrc_01214 NONE
 cpfrc_01213 NONE
 cpfrc_01212 1322219 .. 1322266 - -31.6  -3.39803   TAGTCATAGCTACAA GGTAAATGTGTGGGCCCCTCCC AGTT GGGAGGGGCCCACACATTTACT TAGTTATTAAACTTT 100 25
 cpfrc_01209 1318890 .. 1318940 -  -2.6  -3.80768   CATAGAGAAAATTAA CGGTA-CCGTCAATGGGGTCAAC GATCCA GGTCACCCCACTAACAGATACCC GTCGCTACCTTCCTC  54 5
 cpfrc_01208 1318325 .. 1318335 -  -5.4  -3.66178   GGGGGTAACTTCAAA                 GGAT TGA ATCC                 ATCAATTCAGTTTTC  59 41
 cpfrc_01207 1317736 .. 1317771 -  -9.9  -2.81173   ACCAAGGCTATGAGA    GAAGGTCAGG-GCA TTTTATCGC TGCTCCTGACCTTC    TCTTTGTGTATTAAC  68 117
 cpfrc_01205 NONE
         dut 1316524 .. 1316534 -  -5.4  -2.82156   GCACAAGGAACACGA                 CTAG TAA CTAG                 TTAACCCCTGTAGAG  49 22
 cpfrc_01203 NONE
 cpfrc_01202 NONE
 cpfrc_01201 1313591 .. 1313603 -  -2.7  -3.86346   GCATGTCGCCACAAA                CATAA CAG TTACG                ATTGGTGGCTCTTAG  54 21
         dxs 1311433 .. 1311445 -  -3.3  -2.58667   TTTTATAAAAATCAT                TGCTC CCG GCGCA                GCACATCTCTAGTTG  42 34
 cpfrc_01197 1308453 .. 1308468 -  -3.3  -3.16564   GCGCTATTGCATTAA              CTCAA TCTGCC TTGAG               TTAGAAGAGAAGCCC  46 124
 cpfrc_01193 NONE
 cpfrc_01192 1303090 .. 1303111 -  -7.3  -4.13282   ACCATAGTTTTAAAA           GCTGCGTAA TGCC TTATGCAGC            ATCTATTTTTAATGC  71 34
 cpfrc_01191 1301581 .. 1301638 -  -7.9  -3.40307   GCTAGTTAAGAAAAT GCCCGCACAA-GGCTGCACCTAAAAA GAACTAT TTCTCAAGTACAGCCCCCATGCGAGC ATAACTGCAGATGTA  64 88
        thrS 1299381 .. 1299392 -  -4.4  -3.15124   TAAAACCATCCAATA                TCAG TAGC CTGA                 TTCTTTAATCAAGAA  48 30
 cpfrc_01189 NONE
       pgsA1 NONE
 cpfrc_01187 1296997 .. 1297008 -  -4.4  -2.75064   TTGGTCATCTAAGCA                GTCT TTTA AGAC                 ATAGCACTGGCGCAA  45 65
        pimA NONE
 cpfrc_01185 1294938 .. 1294955 -  -3.3  -3.91911   GGCACTGCAAGCAAA             GCCCTAG GCTC CGAAGGC              GGCTTTGTCCTATGC  54 461
        tesB 1290737 .. 1290751 -    -2  -2.78715   AACGGCGCCATTATA               CGGCAG ATT CTGCAA               TTTTTTAGCGTTCGG  40 64
 cpfrc_01180 NONE
 cpfrc_01179 1289744 .. 1289778 -  -5.1  -4.61648   AAGAACAAGAACAAA    CCCACCGC--CTAGTAC ACT GCACTAACTACGGTGGG    CTGATCTGGTGGGCT  73 46
        ruvC 1288807 .. 1288817 -  -2.4  -3.59698   CTATTCCAGAGACAA                 TCCG CAG CGGC                 TCAGCTTTCTTCCAT  47 92
        ruvA NONE
        ruvB 1286982 .. 1286998 -  -2.3  -2.51738   AAGAATGGCACTAAC              GTTAG CCGCCCC CTAAC              TAGACTCGTCACCAA  39 21
        secN 1286302 .. 1286335 -  -5.4  -2.76696   TCTCCTCTTAACAAT     TCTGCTCTCCTCTTT TATGT ATAGAAGAGAGC-GA     CGATGATTCCGCAAA  49 302
        secD NONE
        secF 1283237 .. 1283273 - -25.3  -4.36914   GCGCTTTTTACAAAA    CTGCCTCTTGTCCCTGG TAC CCGGGGACAAGAGGCAG    TACGTGATTGTGTTT 100 44
 cpfrc_01172 NONE
         apt NONE
         rel 1278263 .. 1278300 - -23.1  -3.30159   TTAATTCTTTCACAA   TAAATGGGCTTATCTCC TTAA GGAGATAAGCCCATTTA    TTGTGAATCCCCCAT 100 78
         tpx 1276029 .. 1276043 -  -4.2  -3.82261   CCCCAATAAAATTAA               CGTAGC GCT GCTAGG               GCCGCATCGTAGTCT  57 7
 cpfrc_01166 NONE
        hisS 1273491 .. 1273518 -  -7.1  -5.45802   GTTCCAAAACAAAAA        CGCTC-ACAAGC GATGA GCTTATCGAGCG        CCTTGAACGCTGCAA 100 482
 cpfrc_01163 1272067 .. 1272109 - -23.1  -3.41229   ATAGGTTCAGGAGAA CATACAGTTGAGCGCTGGAA TTAA TTCCAGCGCTCAACTGTA-G ACAGCCCTTTAATCC 100 138
 cpfrc_01161 1269942 .. 1269966 - -11.4  -2.84794   CGAATGCTAGAACCA          GGGGCAGCAG TAATT CTCCTGCCCC          AACGTAGCAAGCTGC  76 166
 cpfrc_01157 NONE
 cpfrc_01156 1264249 .. 1264265 -  -3.7   -2.6927   ACGCTCCATACATTA              GGAGT CTAGGTT ACTCC              TCGAGCCTATTGTTA  42 38
 cpfrc_01155 1261433 .. 1261445 -  -3.4  -4.09108   CGCAACGCATACAAA                TAGC GCCCT GCTA                TAACCGCCTCCTATC  58 60
        aspS NONE
 cpfrc_01152 1256876 .. 1256910 -  -9.4  -4.72986   TAGGTCTATGAAAAA     TAGAGAGGTGCCAG TATATCC CTAGCACCTCTATA     CGATGGGAACTTAAT 100 80
 cpfrc_01151 1255247 .. 1255263 -  -5.1  -3.23711   TTGAGAATCTAGTAA              TGCTCAC GAG GCAAGCA              GCGGCTTTCTAAACC  52 204
        alaS 1252470 .. 1252514 -  -6.5  -4.42386   CCGCCATGCACAAAA GGCACTATTCCCCAGAAAGAT CTT ATTTCTTTTGAGAACAGTGCC TCTTGCGCTGCGCTT  74 47
 cpfrc_01149 NONE
 cpfrc_01148 1250372 .. 1250428 -   -16  -3.66117   CCAAGTATAGAAAGA GCCTCCTGCTACGTCTCGTGTTCAGCAC AAA GTGCTGT-CT-GAAACGTAGCCGGAGGC TTTCCTATTAGGATC 100 50
        aroE NONE
 cpfrc_01146 NONE
        aroC NONE
        aroK NONE
        aroB NONE
        aroQ NONE
        pepQ 1244069 .. 1244090 -  -3.7  -3.53563   AGACCGTTCTTGAAA           TCAGCGGTGG TTG CCAC-GCTTA           GAACTTCTTTCTGTG  50 182
         efp NONE
        nusB 1242790 .. 1242834 - -13.2  -4.18164   AACGCTTTAAAATAA GCCAAAGGTCGTTATCCCAT CGTCGAC ATGGGAT--CGACCTTTGGC TTGAATTTTAATGGC 100 78
        pyrR NONE
        pyrB NONE
        pyrC 1237131 .. 1237142 -    -3  -4.13732   GAAATCAGAAAAACA                CTAA ATTT TTAG                 GCAGAGCGCGGAAGC  56 22
        carA NONE
        carB NONE
        pyrF 1231514 .. 1231541 -  -8.4   -4.7657   TAAAAAGTTGAAAAA        CCGCAGGTCACC AAAC AGCAACCTGCGA         TCCGTCAAATTCCTA  88 56
        cihF 1230901 .. 1230911 -  -3.2  -2.50816   CTGTCATTGATTAAT                 CCTC GGA GAAG                 CCAAAGCGCTCGAGC  42 10
         gmk NONE
        rpoZ 1229844 .. 1229878 - -13.7  -3.67597   TTTCTCATTGAAGAA    GACCCCTTTA-CACCG AAAC CGGAGGTAAAGGGGTC     CAAGTAAGAGCAAAC  93 66
         dfp 1228496 .. 1228522 -  -4.5  -3.18514   GACACATAATATAGA        CCAAGC-TGTCT AATA AGACAAGCTCGA         AGAATGAGACAAAGC  50 63
        metK 1227168 .. 1227181 -  -4.5   -3.6216   TATGAAGAACTAGAA               GCCCA CTGC TGAGC                GCAAAGCTTCCACTC  57 6
        priA 1224964 .. 1224995 -  -2.9  -3.02202   TAGGTTCACATAAAT      TTTGCCAGCTGAC TGCGCT GTCTGCTGTCTAA       GCGTATCGACGTTCG  43 81
        defA NONE
         fmt NONE
 cpfrc_01121 NONE
         rpe NONE
        ribG NONE
        ribC NONE
        ribA NONE
        ribH NONE
 cpfrc_01115 NONE
        uvrC 1214589 .. 1214599 -  -3.2   -2.6356   ATTTACATTCACAAG                 GCCA GTG TAGC                 GAGATACTTCCTAGC  42 88
 cpfrc_01113 NONE
 cpfrc_01112 1212596 .. 1212606 -  -5.4  -5.38326   GCAAGGAAACAAAAA                 GCTA GCT TAGC                 TTGTTTCCATCAAGA  87 63
        whiA 1211497 .. 1211528 -  -8.9  -4.27796   CAAGAAAGGGGAAAA      CTCCTAAATGTAA TACTAG CCACATTTAGGAG       TTTTAGTGTTAGCTG  80 44
        gapA 1210086 .. 1210122 - -25.3  -4.08945   ACTATGCTCCCAAAA    TAGCCCGGGGTGCACCT CGG AGGCACACCCCGGGCTA    CAGGGTTAGAAGAGC 100 65
         pgk 1208779 .. 1208790 -  -2.2  -3.41053   TTAAATGATGTATAA                CTAG CTTT CCAG                 GACTGCAACACCAGG  45 14
         tpi 1207804 .. 1207829 -  -4.7  -4.72846   TTATACAGTGAAAAA         GTACCGCCACTC TAT GA-TGACGGTGC         TTTCTTTTATAAGGT  73 83
         ppc NONE
        secG 1204558 .. 1204586 - -16.1   -4.1523   CTGAGCAGACAGAAA        CGTCGGTAAGCAA TAA CCGCTTACCGACG        TTCTCGTGATATCTC 100 45
        ctaB 1196335 .. 1196393 - -19.2  -3.75437   AAGTAGCGTAGTAAA GCAAGGAAGGCGGGGTGTTAGAGACCA ATACAA TGGTCTCTAACACCCCGCCTTTTTTA- TTAAACGCTTATTAT 100 79
        sufR NONE
        sufB 1189053 .. 1189070 -  -2.6  -2.89564   GTTGTACCTGAGACA             TCGGAG TTAACC CACCGA              CCCTTCCATCTGCAA  42 14
        sufD 1187821 .. 1187831 -  -4.6  -2.80074   CGTTTTACAAGAGGA                 CCCG GGG CAGG                 CTTATCGACGTTGCC  47 66
        sufC NONE
        sufS 1185713 .. 1185727 -  -4.2  -3.18511   GATACATAGACTCAA               GGTTCA TAG TGCACC               TCCTTCCGAGGAAGT  48 14
        nifU NONE
 cpfrc_01089 1184732 .. 1184763 - -10.9  -3.35283   ACAAGGATGCTATAA      GTTCCCCCG-CTAC GCATG GTGGGCGGGGGAAC      TTATATGAGTTATCG  78 56
 cpfrc_01088 1182874 .. 1182926 - -20.4  -4.68124   CTAAGACATAGAAAA CAATAAAATGCTCAGGACTTAG AAGAAAACA CTAAGTCCTGAGCATTTTATTA CTGCTTAAATAAAGA 100 146
 cpfrc_01080 1171922 .. 1171969 -  -6.4  -3.66908   TTTCCCGAAAATGAA TACGCCTTCCTTAAGTCAGGTCC TTA AG-CTTGACGTAAAGAAGGTGTA TGTATTGCCGTATGC  63 43
        rpfI 1169608 .. 1169649 -  -9.8  -3.37556   GTCAAAATAAGTCAA CCCCAGAA-GCAAAGATTGA TTTC TCAAT-TTTGCATTCTGAGG CGCTTAAAACTGCCA  73 50
        hemH 1168292 .. 1168306 -  -2.8  -3.31598   ACAAAGTGACAGCAA               TTATGG AGG CCGTAA               TTGATACGCTAGGAG  47 120
 cpfrc_01076 NONE
 cpfrc_01075 NONE
 cpfrc_01074 1165032 .. 1165063 - -13.1  -3.60971   ATTTTAACGCGGAAA      GCCGCTGCCTTCA TTTTTT TGAAGACAACGGC       TTATTTTCCTTTGTA  89 42
        mutA NONE
 cpfrc_01070 1159347 .. 1159375 - -16.1  -3.00525   CTCGTCGAAACGATA        TCACCGGTCGC TCTTTCT GCGACCGGTGA        CGAGGTTGGCATGAT 100 45
 cpfrc_01069 1157936 .. 1157948 -  -5.5  -2.76418   CCCTCACACAAACAT                GGCTA AAG CAGCC                CTTAACATGTTAACG  47 294
 cpfrc_01065 1154897 .. 1154932 -   -25  -3.29739   GTTAATGTATATTAA    CGGAGGTAACAATCCC GAAA GGGATTGTTACCTCCG     TTTTTCTTTACTATT 100 123
 cpfrc_01064 NONE
        dak1 NONE
 cpfrc_01062 NONE
 cpfrc_01061 NONE
 cpfrc_01060 1150920 .. 1150941 -    -6  -4.85599   TCCATGGCAGAAAAA           GAAAAAGA AACTAA TCTTTTTC            TTTTTCTCCCCCGGA  81 83
 cpfrc_01059 1150360 .. 1150401 -  -8.8  -3.68302   TCAACACCGCAACAA GCCTGGGAA-AGGATTGCC GCAGG GGCAACCCTATTGCAAGGC TATACTGGTCTTATT  70 188
        bacA 1146391 .. 1146424 - -10.3  -3.79906   GCACTTTTAGAAGAA     GATCACGTGTCCGTT AAAT ATCAGGCACGTGATC      TTTCGTGGTTGTTTA  82 38
        mshC 1145077 .. 1145090 -  -2.5  -3.07882   GAACAAGAATTAAAT               TTTTA CGCC TAAAA                GAGCGTCTAAGGCGC  42 6
 cpfrc_01053 NONE
        metH NONE
        hisE NONE
        hisE NONE
        hisG 1138681 .. 1138692 -  -5.8  -5.06585   CAAACGATATAAAAA                GAGG GAAA CCTC                 TCTACCTTAAAGCCA  85 266
 cpfrc_01048 NONE
 cpfrc_01047 1137070 .. 1137109 - -12.9    -5.252   TATTTTTATAAAAAA  GCCCTGAGAGTAGTGCT TCATGG AGCACTTCCCTCAGGGA   AAGTTATAGCTTTTC 100 79
        aspA 1135305 .. 1135335 - -15.4  -3.17792   AAGAGTAACCGAATA       GACCCCGCACCG AGGTATA CGGGGCGGGGTC       TTTTACTAAGCGGTG 100 64
         fhs 1133366 .. 1133386 -  -6.1  -3.77196   CTATGACCTAGCAAA            GTCACTGCA TAT TACAGAGAC            TATGGCGAATCGTTT  63 237
        pepC NONE
 cpfrc_01041 1129685 .. 1129696 -  -4.4  -3.96327   AGTGTTTATCACAAA                GCAT TCCA ATGC                 TATTACCAGCAGAAA  57 142
 cpfrc_01040 NONE
       pafA1 1126458 .. 1126469 -  -2.2  -3.01791   AGGCTGCGTTCAATA                CAGC TTAG GCTA                 ACGTAACGTGATCTT  42 65
         pup NONE
       pafA2 NONE
 cpfrc_01036 NONE
 cpfrc_01035 NONE
        tatA 1122451 .. 1122461 -  -2.6  -3.66646   AACACGGTAGTTAAA                 TAAA GCG TTTA                 TCCGTGCTGGGGATT  51 23
        tatC NONE
        helY NONE
        pepE NONE
 cpfrc_01030 1116537 .. 1116561 -    -3  -2.87962   CTCATAGAAAAAATT         CTAGCGATACAA GTG TTGT-TCGCT-G         TGATCAGCGCGGCAT  42 29
        cobL NONE
        cobM NONE
        cobK 1113685 .. 1113722 - -25.9   -5.1861   GCTACGAGTAAAAAA   CAGGAAGGCTACTGCAT ATAT ATGCAGTAGCCTTCCTG    CTAGGAGTTAAGCCA 100 42
        cobN NONE
 cpfrc_01022 1105588 .. 1105602 -  -2.8  -3.47615   GACAAAGACATAACA               TTGCTC ACT GATCAA               GAAATGGAAAGAATA  49 165
        ppm2 1104006 .. 1104019 -  -2.3  -2.52676   CATTGCTTTAAGTGA               CTCCT TGGT AGGCG                GTTAAAATTAGCGCT  39 33
        ppm1 1103131 .. 1103174 - -14.1  -4.26589   ACTAGATATTTAAAA GTGATCCCCCACGTGATGCTC TTAT AAGC-T-ACGCGGGGGATCAC TTTTATGTGCTTGAA 100 47
 cpfrc_01018 1101435 .. 1101459 -  -2.1  -3.47349   CCGCGAAACCTAGAA          GGACGATGA AACGTAA CCATAGTCC          GGGAATCATTCTTGA  47 61
 cpfrc_01017 1099411 .. 1099464 - -16.7  -3.47804   ATAAGCTATAAGTAA CACACGCGTCCATGCCGTGACCTTG AATT CTAGTTATCGCCATGGACGCGTGTG TTTACTCGCTAGGAG 100 43
         ndh 1096500 .. 1096537 - -12.1  -3.10112   ATGCAAGGTAGCGAA   GGCCCCTTGTCACAT GTATATCT ATGTAGCAAGGGGCC    TAAAGCTTACCCAGG  82 51
 cpfrc_01013 1094263 .. 1094276 -  -4.5  -3.64198   GTTTTACAGAGATAA               CACCG CAGT CGGTA                AAAGCAGAGCTGCCG  55 452
         gnd 1092346 .. 1092367 -  -2.1  -2.63858   GAGCACATGGACAAT           GGACACCGG TAAT CCGAGGTCG            GAGAATGAAGTCATT  39 163
 cpfrc_01010 NONE
 cpfrc_01009 NONE
 cpfrc_01008 NONE
 cpfrc_01007 NONE
 cpfrc_01006 1086064 .. 1086104 - -23.6  -4.64861   GCCGTTTAAAATAAA  GGGATCCCTTTCAACAGA TCTGG CCTGTTGAAAGGGATCCC  TTCTTTATACGCGTG 100 124
 cpfrc_00999 1079175 .. 1079192 -  -4.9  -2.75997   TTTGGAGAAATTAAT             GAGTGGCT GGC AGC-ACTC             GTGAAAAGGTAGTGA  47 91
 cpfrc_00994 NONE
 cpfrc_00984 1057779 .. 1057814 - -14.8  -4.06055   AGTGCCTAAAGCAAA    GCTCAGCGCCACAC AATGAAGA ACGTGGCGCTGAGC     TTTTGTATATTAAAA 100 55
 cpfrc_00976 1047717 .. 1047733 -  -2.2  -3.53012   CGTCCCGTTGTTAAA              CGGCAA AACAA TTGCAG              ATATTGCCGCAGAAT  47 375
 cpfrc_00947 1013068 .. 1013103 - -12.6  -4.14243   CACTGCATGCTAAAA    GCTCCTCTTCCGC-CTT ACA ACGAGCGGATGAGGAGC    TTGAGATGATGAATG 100 43
 cpfrc_00942 NONE
 cpfrc_00941 NONE
 cpfrc_00940 1006545 .. 1006571 - -16.6  -4.70319   CCAGGAAAACTAAAA         CGCCGAATCGTG TAT CTCGATTCGGCG         TAGTCTACGTACTTG 100 83
 cpfrc_00939 1004066 .. 1004104 - -11.2  -3.79113   ACTTTCGCACAAGAA   TAAAACCCAATGCCTTTT GCA ATAAGGTACTGGGTTTTA   TTTCTTCCTAAATAG  85 33
 cpfrc_00931  994019 ..  994040 -  -8.8  -4.53163   TGAGATAGTAGAAAA           GGAAATGG ATGCAG CCATTTCC            TTACGCGTACCACTT  89 105
 cpfrc_00929  989949 ..  989963 -  -2.1   -4.1721   ATCGACAGGCTAAAA               GCCAT GGAAA ATGAC               GCATCTTGCAATATC  57 128
 cpfrc_00928 NONE
 cpfrc_00927 NONE
 cpfrc_00926  987181 ..  987208 - -15.6   -5.1675   GTATTTAGCAAAAAA        CCGAGACTCTGC GGGC GCGGAGTCTCGG         GAAAAAAATTACAAT 100 44
 cpfrc_00916  977318 ..  977360 - -15.1  -3.21416   TAGCCTGATCATTAA CCAAAGAGCTAGGTAGCAA GACTT TTGTTACCTAGCTCTTTGT ATGACATGGCTACCG 100 35
 cpfrc_00913  973420 ..  973430 -  -2.4   -4.1899   GCAGTCTACTTAAAA                 CGGG TCA CACG                 CACGGGCTTTGACGA  56 521
        ltbR  971058 ..  971080 -  -2.7  -4.58663   ATTACGGTGGAAAAA          CTCGAGTCTT TATA AGGACTCG-G           ATAGCCGTTGAGCAG  65 12
       bioB1  969168 ..  969192 -  -2.1  -4.31085   TATAGGAACGCAAAA          CATCGCTTCTG CGG CAAAATCCATG          CGAGGGATACTTCTC  57 230
        entC  962203 ..  962228 - -13.3  -5.00884   AGTTTTTTTAAAAAA         GCTACCGTACC GTTT GGTGCGGTAGC          TTTTGCCTATTGTTG 100 105
 cpfrc_00889 NONE
 cpfrc_00888  944247 ..  944266 -  -4.4  -4.72497   GAGGCAGCAACAAAA            TATTCCTAC AAC GTAGGA-TA            GCTCATCTCATAAAA  71 49
        ilvD  942835 ..  942846 -  -4.4  -2.74523   GCATGCGGAACATCA                TGGA TACA TCCA                 TTGGTGGTGTCTAGG  44 64
        ilvD  942177 ..  942215 - -17.7  -4.72029   TCTAAGCCAATAAAA  TAA-GGCCCTGACCTCAG TTTT CTGAAGTCAGGGCCGTTA   TCTATGTGATCGTTA 100 38
        lysE  937662 ..  937697 -  -7.1  -4.53163   GTAGATAGGAGAAAA    CTA-AAGGGGAGAA GTTGAGTTT TTCTCCCCTTATAG    TTAATGCATCAGCAA  80 26
 cpfrc_00875  929654 ..  929673 -    -5  -3.31461   GAGTCATGGTTACAA            GCC-CAAGC GTG GCTTATGGC            GAAGCGGTTTTGTTA  53 113
 cpfrc_00873  927365 ..  927380 -  -4.6   -3.6581   AGGATTGGCAAAAGA              CACGGG GTTG CCTGTG               GGCTTGCAAATCATG  55 218
 cpfrc_00870  924581 ..  924618 -   -15  -2.58663   ACGGATCGGTATAAG   CGCTGGGTGTAGAGAGC AAAGG GCTCTCTACACCC-GCT   TTATTTATTTAAGAT  90 26
 cpfrc_00868  921446 ..  921459 -  -2.3  -3.92143   AGATTAAAGGAACAA               GGCTT CTCG ACGCC                TTCGGGGAGGCTCTC  54 291
 cpfrc_00865  918270 ..  918290 -  -6.9  -3.38316   GCACTACGCAATCAA            CTTCACAAT CGC ATTGTGGAG            GCAATCGATAATGTT  58 340
        glgE  910354 ..  910366 -  -3.4  -2.70061   AAGCAGAAAACATAG                GGAT GGGGG ATCC                TTTCAACGATGAGAA  42 41
        glgB  908094 ..  908150 - -14.5  -2.87132   TTGGGGCGCCAGAGA CCCGCTGAGTCGCCGCATATGCTCT AGGAATA AAAGCACATGCGGCGACTTCGCGAT AGTTAGTCTATCCAG  90 28
 cpfrc_00854  906073 ..  906094 - -14.5  -4.93365   GTCGATAAGCAAAAA           GAGCTAGGC AGCA GCCTAGCTC            TTAAAGTATGTGAAG 100 51
 cpfrc_00836  887937 ..  887949 -  -3.4   -3.5394   AAACCTTGGCGCAAA                TGCA GATAG TGCA                TCCTGATTGCGGATG  50 145
 cpfrc_00835  886892 ..  886919 -  -9.1  -2.68942   ATGCGTCGACAGAAG        CCGTCCGCAGG GTCCTT CCTACGGACGT         GACTCATGTGGATGC  59 344
 cpfrc_00829 NONE
 cpfrc_00828 NONE
 cpfrc_00827  876483 ..  876528 - -17.1  -4.89567   CGGCAAAAGATAAAA CGC-AAACCCCCTTCTAACAGA AAT TCTGATAGAAGGGGGTTTAGAG TGTCCCCGACAGGAT 100 201
 cpfrc_00826  875937 ..  875955 -    -6  -3.72141   ATATTGATATGGAAA             TTGTTGAG CGT CTCACCAA             CTTGGGAACAAACGT  60 80
 cpfrc_00824  874705 ..  874731 - -19.6  -4.25104   GTTTTGTCATCAAAA         CGGTCGTGATCA ATA TGATCACGACCG         TTTTGGGTGTTAAGC 100 35
 cpfrc_00821  873150 ..  873177 - -21.4  -5.38839   GATAGAAAAACAAAA        GGCGGCAGCTGT ATGT ACAGCTGCCGCC         TTACCTTATATAAGT 100 41
        putP  863821 ..  863835 -  -8.6  -4.10164   TTACTAGGAGAGAAA               GAATGC GCC GCATTC               CTTTTAGACGGAAGG  76 192
 cpfrc_00815 NONE
 cpfrc_00814  862686 ..  862731 - -27.2  -5.37345   TCGAAGGATAAAAAA CAAAAAGGCGGGTCCCACAT GAGCTG ATGTGGGACCCGCCTTCTTG TTTGGTGCTTAAAGA 100 34
 cpfrc_00801  849287 ..  849325 -  -3.1   -3.1214   AATTGGAACAGAAAC  TGTTATCTGG-TCGCGGC TGAA GCAGCGAGCCAAAGGACA   CGACGTGCTTAAAAA  45 45
 cpfrc_00800  848266 ..  848321 -  -2.7   -3.8917   CCGCAATGACAACAA CAGGTTGACGCCACAACG-TGGC TAGGAGAGTGCG GCCAACGTTG-GGCGTCATCGTA GCGGGGTCCTTTGTG  54 43
 cpfrc_00799 NONE
        sucA  840718 ..  840763 - -22.4  -2.93236   TAAGTCAAGATCATA TAAATAAAGGTGTGAAGTAC GAATGT GTACTTCACACCTTTATTTA TGCTTTGCGGCTAGT 100 36
 cpfrc_00796 NONE
 cpfrc_00795 NONE
 cpfrc_00794  836798 ..  836826 - -13.9  -5.24799   CCAGAAATACAAAAA        TCCCAGCCTAAGC AAG GCTTTAGCTGGGA        TGACATTACTTAACC 100 35
 cpfrc_00790  834424 ..  834457 - -13.9  -2.73364   AAAAAGACCACACGA     CTGGGTGTGCGGCTCT ACA AG-GCCACGCACCCAG     TTTTACTTTTTGGTC  88 28
 cpfrc_00788 NONE
 cpfrc_00787 NONE
 cpfrc_00786  829523 ..  829560 -  -3.3  -3.50393   TTTTAGCTGAGAGAA   TCGCAACGCTACCGCCA GTGA TGGAAGTAACTGCGCGA    GCTATGATTACTCGT  49 131
 cpfrc_00778 NONE
 cpfrc_00777 NONE
        dapD  821179 ..  821214 -   -17  -3.01712   CTTTCCGCGGCAAGA    GGGGAGAAGAACAGCG ATCA CGCTATTCTTTTCCCC     TGCTGGATATTCGTT 100 58
 cpfrc_00775  819652 ..  819696 -  -7.3  -4.86939   GAATAAACTGAAAAA GCCCCTTCGATGTTCATAGC GATGAG GCTA-AAACACGGAAGGGAC TTTCCTCTTTCTCCT  85 75
 cpfrc_00774  818494 ..  818504 -  -6.8  -3.30124   GCGGAGCCGGTATAA                 GCCT AGG AGGC                 TATCCCGAAATGCTG  59 17
 cpfrc_00766 NONE
 cpfrc_00765 NONE
 cpfrc_00764 NONE
 cpfrc_00763  808738 ..  808769 - -13.1  -2.66316   TTTTGTACGACACTA      GGAGAGGGGATTC TTTACG GAATCTCCTCTCC       TTTTTTTATGAAAGC  81 65
 cpfrc_00752  797215 ..  797238 - -13.2  -2.78495   CATCACGAAAATTGA          CCCCGATAAG AATA CTCATCGGGG           TGGAGTGCGATTGGA  85 59
 cpfrc_00751 NONE
 cpfrc_00750 NONE
 cpfrc_00749 NONE
 cpfrc_00748  791328 ..  791340 -  -4.1  -3.08679   GCTGCGGAGGGAACA                GAACA ATC TGCTC                CCTCCTACCAACGCT  47 55
 cpfrc_00746  789814 ..  789828 -  -3.4  -3.63589   GAAAAGATTTGCAAA               GGGGCA GAA CGCCTC               TGTGAAATGGACGCC  53 399
 cpfrc_00744  786618 ..  786642 -    -7  -2.61272   AGATGCCGAAAAACT          GCCCCGATGC TTGTT GCGTTGGGGC          TTGATGGCGAGTTTC  56 131
 cpfrc_00743  785730 ..  785781 - -20.2  -4.91977   GACTAAAACATAAAA TTACCCCCCTCCTAGTCGCGGG TTTGTCTT CCTGCGACTAGGAGGGGGGTGT TTGTTAGCTATAAAG 100 29
        xseA  783361 ..  783375 -  -2.8   -2.9652   GCATAAAACTAATCA               GCAG GTGAAGT CTGC               ATGCTTGCGGCAGTG  43 4
        xseB  782811 ..  782825 -  -7.1  -3.06815   ACGTTGCGGAATATA               CCTCC GAAGA GGAGG               GCGTGCGCATGCTTT  54 206
        glpX  781027 ..  781060 - -16.1  -2.74605   TGGGGGTAAAAGCCA     CGGTGGCCTAGCC GTGCTGTT GGCTAGACCACCG      TAAGAGCAGGGAGAC 100 41
         fum  779359 ..  779389 - -18.5  -4.79451   ATTGGAAAGACAAAA       GCCAGGAAAGTAC GGTGA GTACTTTCCTGGC       TTTGAAGTGGGTCTG 100 45
       tetR3 NONE
 cpfrc_00735  777000 ..  777025 -   -12  -4.64766   TTGAGAGTTTAAAAA         GACTGCATCT ACAACA AGATGCAGTC          TTTTTCTATGGGGTA 100 56
 cpfrc_00731  774425 ..  774459 - -11.6  -5.26119   TTTGGAAAAATAAAA     CGGCTGAAAAGG AGATAACTTTA CCTTTTCAGCCG     GCAGTAGGGTGCTGG 100 43
       tetR2 NONE
 cpfrc_00729  771784 ..  771824 -   -14  -3.97331   AAGTGAGCTAAAGAA GCCCCCGACACC-GCACGA TTTT TGGCGCTGGTGTCGGGGGT  TTGAGCATTGAGGTT 100 41
        coaA  769131 ..  769144 -  -8.1  -3.65351   TTATTCGCAGCTAAA               CCCTG CGCA CAGGG                CGGCAATGACGTCAC  68 177
 cpfrc_00722  765648 ..  765662 -  -7.1  -2.79659   GAATAAAAGAATCTA               CGTGC GCTTG GCACG               GCAACACTTACGTTT  57 142
        greA  764948 ..  764980 -  -4.8  -4.35524   TGCGGAAAGGCAAAA      GCCCGCTGCA ATGAGAGAAGAGA AGCAGCGGGC      GATACAGCGCATTAG  67 37
 cpfrc_00720  764424 ..  764466 - -20.1  -4.21945   AGTAAGAGATACAAA GC-CGAAGGTGGTTGCTTCC TAAG GGAAGCAACCACCTTTGTGC GTTATAGCAGAATCA 100 27
        lysI  754465 ..  754502 - -15.7  -4.74453   CAACAGACTGAAAAA   TGAGGCCACGCTGTTTT CTTT AAAACAGTGTGGCCTCT    CGCTTTAGGATCTTA 100 38
        glmU NONE
        prsA  743919 ..  743933 -  -3.4  -2.62263   AGGCCCGGTACACGA               GGCCGA GTA CCGGGC               CTTGACTGAATTCTA  42 38
 cpfrc_00703  741748 ..  741760 -  -4.7  -5.13722   CGCACCAAAAGAAAA                TGGCC TGC GGCCG                ACTCGAATGTCTTGG  80 241
        rplY  741029 ..  741052 -  -9.6  -5.52384   GTGGCAGCAAAAAAA          CCAGCCCACA AAAA TATGAGCTGG           CTTTGTGCGCAAGTA 100 48
        pthB  740338 ..  740355 -  -4.1  -5.24416   CAAGCACAAGAAAAA             GTGTTGT CGGG ACAACCC              GCGCTGTAAAACCTG  81 112
        pthA NONE
 cpfrc_00697  737611 ..  737626 -    -4  -2.57192   ACGGAAGGCAAGCTA              CTCATGG AAA CCA-GAG              CTGAGGGGGCGGGTT  44 52
        prfC  735840 ..  735889 - -13.9   -4.9138   ACTATCCAAATAAAA CGAATAAAGAAAGCCGCAGTT ACTGTGAA AACTGCGGCTTTCTCTATTTA TCGTGAGCGTACCTT 100 39
        gapB  732207 ..  732247 - -22.1  -4.96646   CCACATAATTAAAAA  GCTAAAGGTGCGGCTCC GAGTGAG GAAGCCGCACCTTTAGC  GCTTTTTGAAGACTT 100 39
 cpfrc_00692  731586 ..  731597 -  -5.8  -4.08692   GAATGCCGGTGAAAA                TCCG GCAG CGGA                 CCCCGCCACTGTAAC  66 136
 cpfrc_00691  729830 ..  729841 -  -7.2  -3.31322   CCCAATTTTGCAGAA                GGCG TTCG CGCC                 GTATTGGTGGATAAG  61 122
 cpfrc_00688 NONE
 cpfrc_00687 NONE
 cpfrc_00686  726971 ..  726992 -  -2.9  -3.86015   GACCGCTGCCAGAAA           TTCCGCAGC GTCC GCCACTGAA            AAAGGATTATGTACG  54 200
 cpfrc_00673  709999 ..  710016 -  -5.5  -2.90309   TCCTAAACAAGACCA             CCCGTAC TTGT GTAGGGG              GCTGAGTATCAAAGT  49 215
 cpfrc_00666 NONE
 cpfrc_00665 NONE
        mscL  702303 ..  702352 - -34.7  -3.88946   TACGGGACACAATAA CTACAGAGAAGTGGGAGCCGACT TACT AGCCGGCTCCCACTTCTCTGTAG TTTGTCTACTCGCTT 100 31
        rpmB NONE
        rpmG NONE
        rpsN NONE
        rpsR  695289 ..  695316 - -10.5  -3.65425   CTGATATACGGCAAA        GCTCCCACCCG AATAAA CGGATGGGCGC         TTAGGCTGTCATCGC  79 88
 cpfrc_00653 NONE
        amtR  693359 ..  693386 -  -8.3  -5.12916   CATAAAAGAATAAAA        GGCGCTAGAGG GATTAA CCACTGGCGCC         TGGGAAAGAAAATTA  93 38
 cpfrc_00643  683864 ..  683885 - -10.2  -5.35224   CTCAGAAAAATAAAA           CCGGATAG GGGGAG CTATCCGG            TTTGTTTATACGCTT 100 31
         csm  680646 ..  680666 -  -4.6  -4.15044   GTGGGCGTTAATAAA            GGCGGGAT TTCAG ACCCCTCC            GCCCCCTTTGGCGGA  62 177
         pgi  677392 ..  677440 - -21.4  -2.60988   AATGTAATTAATTTA CAAGGCCCTATGCACTCTCTTTA CTAA TAAAGC-AGTGCATAGGGCCTTG TTCGCTGTATTAATT 100 45
 cpfrc_00636  675235 ..  675249 -  -7.8  -2.52623   GCGTTGGGATAACAC               CCCGTG GGG CACGGA               TATCAGGAGACTTGA  53 174
        cysQ  669388 ..  669412 - -12.2  -4.39287   GCAAGCATAGGAAAA          CCCACTCGAA AATAA TCCGAGTGGG          GAGCTAAAACGGGAA  95 51
        thyA  668533 ..  668549 -  -2.9   -2.9155   GCCCGCAACATTAGA              CCGCG ACCTCAG CGCGA              ATTGCTGGATGCGGG  42 4
        folA NONE
 cpfrc_00631  667640 ..  667682 - -12.9  -3.26745   GATATGTCAAAGAGA TCGGCGCGCAG-GTT-GCC GAGTTGA AGCAAACGCTGCGCGCCGA ACACGGGTGGATTAT  83 71
         ogs NONE
         ocd NONE
         odc  657446 ..  657456 -  -3.2  -3.43042   TTGGTCATGAAAAAT                 CCTC AGT GAAG                 TGATGGTGTGGGGTG  48 4
         tsb NONE
        mdtK  654900 ..  654940 - -15.7  -5.08601   TGATGGGAACAAAAA  GATTGGTAGCTATCCCT GATATAA AAGGACAGCTACCAATC  TTGGGTTATGGATAC 100 44
 cpfrc_00619  653948 ..  653999 -  -9.7  -3.72009   ACAACATGAGGTAAA TGGTAGAGCCACCTTGCCCAAA AGACTATTG TCTGGACAAGGTGGCTCTAT-A CCGGGCTACTACCTC  76 52
 cpfrc_00618  652453 ..  652468 -  -4.6  -4.07568   TTCCTGTCTTTAAAA              CAGCGC GCAA GTGCTG               GGGTCGATTGGAGAG  62 222
 cpfrc_00617  651480 ..  651505 - -16.9  -3.28785   TGGGAAAATAGCTAA         GCGGCGACCTC GTAC AAGGTCGCCGC          TTCATGTCTTTCCTA 100 38
        sodC  645271 ..  645281 -  -2.4  -3.28712   GCTGCTGGGGCAGAA                 CGCG AGG CGAG                 AAGTTTTACTTCTTG  45 31
       accDA  643555 ..  643594 - -14.4  -4.13728   CATAGATGCTGAAAA  CACAAAACCGCGCTGTTT TAAG AGACAGCGCGGCTTTGTT   TATGGGGTATTAGCT 100 35
        serC  639769 ..  639806 - -13.4  -3.22091   ACTTTAACGCAGCAA   CGCCCCCAAAGGCCGGC GCTTG GCCGGCATGTGGGG-CG   AATGCTTGTGGGGAT  88 110
 cpfrc_00604  638573 ..  638584 -  -4.4  -2.87146   TGCGTTCATAAGAAC                CGTT CCTT AACG                 CAAAGAAATAAACAG  45 69
 cpfrc_00603  637544 ..  637556 -  -9.1  -3.17075   CCTGGGCTAACCGAA                CACGC TAT GCGTG                CAACTGATGTGAGAG  65 133
 cpfrc_00598 NONE
 cpfrc_00597  632665 ..  632708 - -17.8   -2.7094   TCCTAGGCACACAAG CAAAACCGACTATAAAGAAA CGGA TGCCTTTATAGTCGGTTTTG TGCATTTAGAAGTTT 100 41
        rpfA  630755 ..  630801 - -24.6  -4.07568   TCTGTTCCTGCAAAA GATAGGTCCCGCTGCTGCTGAA TAA CTCAGCGGTAGCGGGACCTATC TTTGAGATGTATTTT 100 39
 cpfrc_00593 NONE
 cpfrc_00592 NONE
 cpfrc_00591 NONE
 cpfrc_00590 NONE
 cpfrc_00589  624412 ..  624422 -  -8.2  -3.44848   CTCTGCTAGCAAACA                 GGGG GCA CCCC                 ACAGAAAACCTTTTA  69 38
 cpfrc_00584  613643 ..  613653 -  -4.6  -3.34398   CTTCGCTTGGAAAGA                 GCCA ATG CGGC                 GGCCCAGCTAGAGAA  51 217
 cpfrc_00579 NONE
 cpfrc_00578  607466 ..  607482 -  -4.3  -4.12902   CAATGATCCCCAAAA              GGTCCTC GAC GGAGACC              TTGATGGCTTCCTAG  62 116
 cpfrc_00576  605405 ..  605419 -  -4.2  -3.05384   AGAAGTCATACAAAC               CGGCTT TCT AAGACG               TCGCGCGTAGAAGGA  47 46
 cpfrc_00575  604526 ..  604575 - -10.2  -4.93812   AAAATAGAAAACAAA GCAATAAGGCAGGTTTTGGCTGA AAGAA TCAGCTGAAACCTGCCTT-TTGG GCTTAATACCACGAG 100 42
 cpfrc_00566  596433 ..  596446 -  -2.4  -4.80487   TATAAGTAAAATAAA               CCTA TTTGCC TAGG                TCGGTGAAAATAGGA  67 13
 cpfrc_00565 NONE
 cpfrc_00564 NONE
 cpfrc_00563  589622 ..  589637 - -10.4  -5.61881   GTTCAAAAAGAAAAA              CCCCAC TGAC GTGGGG               AAGTTTTCTCATCGG 100 73
 cpfrc_00557  578328 ..  578370 - -29.4  -4.77629   AAAAGTAAGACAAAA CCACCGCCCCTAACGCTC ACACCTA GAGCGTTAGGGGCGGTGG TTTATCCCGAGTAGT 100 273
 cpfrc_00552  571810 ..  571820 -  -2.4  -3.23822   GAAAGCACAAAATCA                 GCTC CTG GGGC                 ATCAATCGGGCGGAA  43 52
 cpfrc_00551  570749 ..  570778 -  -2.7   -3.6284   AATTACCATCTCAAA       GATATCGGCGGCC CCTC AGCCGGCCTTATC        TTTTCCCTAGCCGTG  51 345
 cpfrc_00549  568108 ..  568123 -    -9  -3.42182   AGCAAAAACGACGAA              CAGCGA GTCA TCGCTG               AAATGTCTGCAAAAG  69 458
 cpfrc_00547  566686 ..  566708 -  -3.3  -4.07568   TGCTCGTGGGCAAAA           GCTCGGC AGGAAGGAG GCCGTGC           AACGCGCAAGCGAAG  58 404
 cpfrc_00538 NONE
 cpfrc_00537 NONE
 cpfrc_00536  550948 ..  550990 - -26.7  -5.65496   TATTAAAAACAAAAA TAAGCATGAAGCTGGCAAG TTTTG CTTGCCAGCTTCATGCTTA TGTGAGACTTGTTAC 100 40
        whcE  549428 ..  549466 - -15.5  -3.32769   TGGTCAAACGACCAA  GCACAGAGGGTGCTCACCT TAA AGGTGAGCACCCTC-G-AC  TAGTAATAGACCGCT 100 200
 cpfrc_00532  547886 ..  547905 -    -5  -3.66803   GGGGAACATTCGAAA            CGATTACC CGGA GCTAATCG             GCTTGAACGTCGACA  57 19
 cpfrc_00531  547388 ..  547428 -  -6.9  -2.61997   GCCCAGATATAACAT TGC-ACCGACCCAAAAGA TTGCGG TCTTAAGGGCCGGTAGCA  CGCCTCATGAGGCCG  53 30
        aroA NONE
 cpfrc_00529  544639 ..  544660 -  -3.7   -4.1673   GAAGTTGGGAAGAAA           GTTCGTGCGC TTT GCGCA-GAAT           ACGATCTTCCTTACA  60 326
 cpfrc_00524  540817 ..  540842 -  -8.4  -3.41671   GAAAGATGGAATCAA         GGAAGAGACTG TGCGC CAG-CTCTTCC         TGCTACGTAAACAGT  64 91
 cpfrc_00514  529562 ..  529577 -  -2.6  -3.49634   AGCGGAAACAGAAGA              TCATAG GGGA CTATAA               AAGCTCTTCTTGCAG  49 10
 cpfrc_00513  528499 ..  528525 - -18.8  -4.35604   GGAAGGCATAAGAAA         GGGGAACAGCTC AAA GAGCTGTCCCCC         TTTTAAAATCATCTA 100 43
 cpfrc_00508  523102 ..  523120 -  -5.2  -2.87683   ATATGGCTGTACATA             TCCCGCTA ATT CAGCGTGA             GTGTGCTGTGAATCT  49 524
       lytR1  518733 ..  518770 - -15.8  -2.66274   TGCGGGACAATGAAT   TGAGGTGCATCGAC GATCGGAAAA GTCGATGCACCTCA    GCCGGCTGGAGAATC 100 54
 cpfrc_00503  518003 ..  518015 -  -2.7  -2.58249   CATATGCGCGAGAAG                GATTA TGA CAATC                TCATCGTGGCTTTTT  41 15
 cpfrc_00502  516459 ..  516514 -  -6.3  -4.07678   CTTTAAAACACTAAA GGAAGCCCGC---GGTAAGAACATGTTC GTG GAGCATGAGCTTACCGGTGCAGGCTTCC TGGATAAAGATAGTG  68 98
 cpfrc_00501 NONE
 cpfrc_00500 NONE
 cpfrc_00499  513740 ..  513752 -  -6.3  -3.74693   GCTGATTGTAGGAAA                GAATC GAC GATTC                TTACCCTCGGCTCTA  60 521
 cpfrc_00493  510337 ..  510351 -  -2.8  -2.94099   GTTTGGCAGCATAGA               CTGCTA GCG CAACAG               TTTCCAGAACAAAAT  43 14
       dtsR1 NONE
       dtsR2  506735 ..  506773 -  -5.2  -3.89291   TGAACAGGATAAGAA   CTTGGTGCGGTTAGATAT GCG ACGGCTAGCGGCACCAAG   CCCCTAAAAGACATA  61 49
        accE NONE
        rbsR NONE
        rbsK NONE
 cpfrc_00487 NONE
 cpfrc_00486  503160 ..  503172 -  -6.3  -3.74747   GCAAGGTTTAGGAAA                GAATC GAC GATTC                TTTCCTAAACACAGC  63 46
 cpfrc_00483  499036 ..  499046 -  -6.8  -3.81062   ATCAAAAATCTTAAA                 CCAC TCG GTGG                 ATGGAGGTCAGTGCC  66 10
        sseA  498015 ..  498052 - -13.6  -3.54424   CGGCACTTTTTCAAA   GCAAAAGCTCCCAGAG ATTTAA CTGTAGGAGCTTTTGC    TGCTGAAAGTAATTA  91 48
       accBC  495986 ..  496025 - -10.6  -4.13014   CGTAGACGTGGAAAA  GCCGCACGCTTTACGACG AAAA CATCGATGAGCATGCGGC   CTTCAAACGGATAAA  85 55
 cpfrc_00480  495518 ..  495563 -  -9.9  -2.54467   CACAAAGCAAGATAG CTTACGCGGGTGGGAAAGAATC GAC GATTCCTTCCTACCTA-GTAAG GGTGATGCCGTGCGC  66 14
        lmrB  493925 ..  493966 - -16.6   -3.5518   CTAAGACCTATACAA GTTCAAGGGCGGCCACTC GTATGT AAGTGGCCGCCCTTGGGC  GTGGGCACACAAAAT 100 43
        pmmB  485346 ..  485356 -  -2.4  -4.34771   GAAAACTCATTAAAA                 GCGC AGG GCTC                 GGCTCCGCATCTCAT  61 9
 cpfrc_00472  483603 ..  483622 -  -6.4  -3.09004   TGAGCGCCAAAAGTA            GCGGCT AGGGGCAA AGCCGC             GCGAAACAACGGAAC  55 112
 cpfrc_00471 NONE
 cpfrc_00470  481523 ..  481547 - -14.3  -4.95547   CTCATAACAAGAAAA          GGCCCTACGCA TGA TGCGTAGGGCG          GGGGAGAATTGGCGA 100 45
        dacA  479006 ..  479016 -  -8.2  -3.62522   GAATGCTTTGAATAA                 CCCC GCG GGGG                 CTACGTTCGGACCAA  68 374
       merR1  474825 ..  474839 -  -5.6  -3.41602   GCGAGCTGAGCAGAA               GCCCAC GGC GTCGGC               AAGCTAAACCCACGA  54 29
         icd  471111 ..  471139 - -12.5  -3.64703   CGGTTTTTATGGAAA       GCCGCACC-CGT GCATGA ACGTGGTGCGGC        TTTTAGAGAGTGAGC  88 40
        metC  470412 ..  470430 - -10.4  -2.87527   TATCGACGATCAAAG             GCACATAA TTT TTATGTGC             AACGTCTGCGAGCGG  71 18
        metC  469615 ..  469651 - -19.7  -3.02043   AAGCCGGGGGTAAGA    CATGTGAGGCGAAGA GAACGGT TCTTCGCCTCACATG    TTTGTCTAGATGGCG 100 31
        htaB NONE
        metA NONE
        metA  461516 ..  461544 -    -3  -3.35996   GACGCTCACCTATAA        GCGGAGCCAG CCGATATTT CAGGCTCAGC        CTAAGTCGGCGACAA  47 239
 cpfrc_00450  460079 ..  460111 -  -9.4   -2.8001   ATAATCCTCACGACA     TTGGCCGGAAGGAATC GAA GATTCCTTCCGG--AA     TCCAGTACATAGGGC  65 289
 cpfrc_00448  458533 ..  458546 -  -3.8  -3.48064   GTTACAATCAAGCAA               CCTG TCTACC CAGG                GATGAGTCTTATCTC  52 141
 cpfrc_00442 NONE
 cpfrc_00441  452781 ..  452817 - -28.3  -3.59979   TGGGTTGAGCTTAAA    GGGGGTGGGAAAGAATC GAT GATTCTTTCCCACCCCC    TTTGTCGGCTGTCTA 100 384
 cpfrc_00440  451413 ..  451424 -  -7.2  -3.29511   TCTATGGCTTGACAA                GGCG TAGA CGCC                 CTGTCCCCAGCGGTG  62 67
 cpfrc_00439 NONE
 cpfrc_00438 NONE
 cpfrc_00437  448591 ..  448620 - -10.8  -4.53303   TATGGGGATAGAAAA       TGGGCGCCATAC AAGGAA ATATGACGCCCA        CTGGAAAGAATCGAC 100 50
 cpfrc_00435  446616 ..  446626 -  -6.8  -2.75803   AGAAGAGGGCAAGCA                 GGTC TCT GACC                 CGATAGTGGATGCGT  52 229
 cpfrc_00432  443454 ..  443466 -  -3.4  -4.07687   ATCTGGGCTCCAAAA                GTGA AGTGG TCAC                GGTCGAGGAAATCTT  58 386
 cpfrc_00426 NONE
 cpfrc_00425  436340 ..  436354 -  -3.5  -4.07568   GGGCTGCTGTTAAAA               GAAGC GGGGA GCCTC               GAGCCCGTCTAGATA  58 5
 cpfrc_00410  424121 ..  424145 - -14.4  -4.30576   CGTCGAGTATGAAAA          GAAGCCTCTC GGAGT GAGAGGCTTC          TTGCATTATGAGAGT 100 47
 cpfrc_00398 NONE
 cpfrc_00397  410541 ..  410554 -  -3.7  -3.54489   GCAAGGGGAAAGGAA               CGCGC ATGA GCTCG                ATGCGTGACGCAGTT  51 460
 cpfrc_00381  396030 ..  396057 - -14.1  -3.72576   GCTGGTTGCACGAAA        GCCCACGCGGG GAAGTT CCCGTGTGGGC         AGCGGCAATAAAAAT  95 50
 cpfrc_00380  394410 ..  394434 -  -4.2  -3.06133   TAACGTGGCAGTCAA          CATGGGCATC ATCGG GGTGGCCATG          GTGAAGGAGTTTTCC  47 310
 cpfrc_00359  376693 ..  376703 -  -2.4  -2.66812   AACTTGATCATAGTA                 CGGG CTG CCTG                 TCGTGATTTTATGTA  39 128
 cpfrc_00358 NONE
 cpfrc_00357 NONE
 cpfrc_00356  372595 ..  372607 -  -4.7  -2.58539   AAGAGGATTAATTGA                GAGGG GTA CCCGC                AAAGTGGCAAGCGTG  46 5
 cpfrc_00355  370758 ..  370795 - -14.4  -4.98857   AGCTAATTACAAAAA   CGCGGTTTGTATCT TGAGAAATTG AGATACAAACCGCG    TTTTCTTATGCGCTG 100 110
 cpfrc_00343 NONE
 cpfrc_00342 NONE
 cpfrc_00341 NONE
 cpfrc_00340 NONE
 cpfrc_00339 NONE
 cpfrc_00338  362031 ..  362050 -  -2.8   -4.4078   CCGGGGGAAGGAAAA            CCAGCAAG GTTA CTCACTAG             AGAACAAAACATAGT  64 219
        nrdD NONE
 cpfrc_00329  352657 ..  352671 -  -2.8  -2.62263   ATCCCGCTCACACGA               GCATCA GCA TCATGC               GCCCTCCGCATGGGA  40 437
 cpfrc_00301  318549 ..  318564 -  -5.4  -2.88663   ACGCATGTGCAGAGA              GTGATC TTAT GACCAC               AAGGGGCTATCGCGG  49 16
        ldhA  317424 ..  317470 - -13.1  -4.67038   CGGCTAAAAGTAAAA GTCAAGGCCTCCCTGCT TAGGCATAAATGC AGCGGGGAGGCCCTGAC AATGCGCATCTAGGC 100 50
 cpfrc_00294 NONE
        menB NONE
        menE NONE
 cpfrc_00291  307496 ..  307536 -  -7.7  -2.52896   TCAGGGTTCAAGCTA CTCAGGCCGTAGCGTTATG GAGTG CACAACGCAA-GGCC-GAG AAGGATTGGGTTAAA  53 47
 cpfrc_00289  306786 ..  306827 - -13.1  -4.72272   TCGGGGCATGAAAAA GACGCTGTGCTTTTATTCC AAGG GGAATCTAAGCACAGCGTT  GTCATAACAACTGCG 100 61
       znuB2 NONE
       znuA2 NONE
       znuC2 NONE
 cpfrc_00284 NONE
 cpfrc_00278  295462 ..  295478 -    -3  -3.21924   GGAGGCTGCACAACA              GCTTAA AACTA TCAAGC              TAGCGAGCTCTGCCG  45 514
 cpfrc_00268  283311 ..  283322 -  -5.8  -2.73408   AGGGAAACGAGATTA                GCGT CGCC ACGC                 TTTCCAGCCGCCGAG  51 11
 cpfrc_00260  276643 ..  276653 -  -5.4   -3.1855   CGCTCCAAGATTGAA                 GAAG AGC CTTC                 TTCCCCTAAACACCT  52 77
 cpfrc_00255  270519 ..  270553 -   -13  -3.87979   CAAAGTTAAACAGAA     CCCCTGCTTTCC CTATTGTCTCT GGAAAGCAGGGG     GTTACACAGCAAGCT  93 59
 cpfrc_00253 NONE
 cpfrc_00252  267851 ..  267867 -    -8  -3.61715   GATCTCTTTTAAGAA              GGCCTA TTTAT TAGGCC              CGTCGCCCAAATAGG  68 161
        pflB NONE
        pflB  264965 ..  264998 - -17.5  -3.08032   TTCTGGGCAAAAGTA     TGCCACCGTCTCAAG CGAA CTCGAGGCGGTGGCA      GCTAAAGATGCACGC 100 56
        pflA  263935 ..  263974 - -15.8  -3.39018   CCACTAGTGGAAAGA  GC-ACTGGCCCGAATCCTC TGT GAGGATCCAGGCCAGAAGC  TAGTTAAGGGACTAG 100 29
 cpfrc_00248  262948 ..  262963 -  -4.6  -4.30576   GGGTGATCACGAAAA              GAGCGG AATC CCGCTG               TACGTTTTATGCGAT  66 100
        ramB  254618 ..  254676 -   -18  -4.48221   GATTAACCTATAAAA CCTCATAGCTTTAAACCCCAGGTAGAAAA ATTA TTTTCTACCTGGGGTTTA--GCTACG-GG ATTTGTATTAGTAAG 100 33
 cpfrc_00237  251246 ..  251286 -  -3.8  -3.67296   CATTACTCATTCAAA GGGGAC-GCCCGCCGGCGA AAAA TCGCTGACGGGCGGTGTGC  CTAGAAAAAGAGCGT  55 45
 cpfrc_00236 NONE
 cpfrc_00235 NONE
        rmlB NONE
        rmlC NONE
 cpfrc_00232  244413 ..  244439 - -16.7  -3.18571   GTTCTTAAACATATA         GTGCCTTCCTC GGAGT GAGGAAGGCAC         TTTTTGCTAGGTACT 100 77
 cpfrc_00230  241597 ..  241607 -  -5.4  -4.62336   AGGCCATGGGAAAAA                 CTCT ACT AGAG                 CAGGATGTTTTCTGT  73 140
 cpfrc_00229  241217 ..  241246 - -12.3  -4.36914   GGCGGCTCCACAAAA       TCCCAGCTAGA TTAACCTT TCTAGCTGGGA        TTTTCTTTTGTATAG  95 131
         cya  238183 ..  238222 - -15.3  -4.18674   TTGATAGATAAACAA  TGTAGGTAGGAATGTTT TTGAGG AAACATGCCTACCTACA   CGGGAGAATGAACAG 100 59
 cpfrc_00226  236025 ..  236063 - -16.1  -4.74103   CGGCGAATGCAAAAA   GCCCCTCTGATAGAACT ATAGA AGTTCATTCAGAGGGGC   CCTCTTATGTTTTAT 100 37
 cpfrc_00223  229731 ..  229770 -  -5.7  -4.10657   GCACACCGCCCAAAA TACGGCAGATCTCTCC-GC AATC GCAGGGGCGA-CTGCCGCA  ACGCAAGGACTAGTC  67 207
 cpfrc_00215  224866 ..  224877 -  -4.4  -3.61398   TGGTTTGTGCAATAA                TTGC GAGT GCAA                 GGCCCCGATATACAG  52 123
 cpfrc_00214  223546 ..  223562 -  -7.2  -3.28712   CTTTTGGTCCTAGAA              GCGCGC TCGTG GCACGC              GTTGCAGCTCGTAGC  59 285
 cpfrc_00212  222443 ..  222470 - -12.7  -4.77036   TCGTAGGACGAAAAA        CGCCCCGCACA ACGACG TGTGAGGGGCG         CAAGTGCTTCCACGT 100 51
 cpfrc_00211  221146 ..  221159 -  -3.8  -3.61398   TCCTGGGCTCAAGAA               CCAG CCGAGT CTGG                CGAGGACGCCATAGT  51 355
 cpfrc_00206 NONE
        glxR  216675 ..  216722 - -28.6  -4.15044   GTTGCCTTCAATAAA GGCCTGTGGCCCCGGTTCTC ATATGAGG GGGAACCGGGGCCACAGGCC CTTTATAGGGAAAGC 100 42
 cpfrc_00200  212032 ..  212052 -  -4.5  -3.57971   ATAGCTACGGCTAAA            GCTGCAGGC CAG GCCGACGGC            AAGCGCCTGTCCACG  52 90
 cpfrc_00198  210514 ..  210557 -   -22  -4.46233   TTAACCCCAAACAAA GGAATAAGCTGGGACATGGT GTAC ACCATGTCCCAGCTTATCTC AATGGTCGGGATAAC 100 161
 cpfrc_00197 NONE
 cpfrc_00196  209482 ..  209497 -  -2.4  -2.63596   GGTTACCGTAGACTA              CCCACC GGTT GGCGGC               ACGAATCAGATGGAC  39 87
 cpfrc_00195  209136 ..  209153 -  -2.5  -2.83346   GTATAAAGCGAACCA             GCCGGGG TATA CCACGGA              AAGCTGATTGATAGC  40 73
 cpfrc_00194 NONE
 cpfrc_00193  206053 ..  206083 - -10.4  -5.09685   TAACACACAGAAAAA       CAGGCCAGCAATCC AAT GGGTCACTAGCCTG       CTCTCAATGGTCGGG 100 163
 cpfrc_00192  204382 ..  204410 - -11.8   -3.4285   CTAGGTAAGCGAGAA        CCCTCAGGTGCT CATGC AACACCTGAGGA        CATCATCCGCTAGTT  82 35
        mnhB NONE
        mnhC NONE
        mnhD NONE
        mnhE NONE
        mnhF NONE
        mnhG  196774 ..  196785 -  -4.4  -2.57564   GGAGCTTTGGATAAT                GGAT GGTT ATCC                 CCGGCTCAGTGCGCC  44 68
       tcsS1  195935 ..  195945 -    -4  -2.65298   CCTATGCATGATAAT                 TCTT AGG AAGA                 GTAATCAACACTGAT  44 1
       tcsR1  195188 ..  195211 -  -4.6  -3.04144   CCCGTAGCGGTAACA          GTCAGTAACA GTGC TGTTACCTAC           TGTTATTAGGGGCAG  49 41
 cpfrc_00182  193688 ..  193711 - -14.6  -4.84492   TCAACGATAACAAAA          GCGCTGGGAA TGAC TCCCCAGCGC           TTTTCCTCATTAGGA 100 42
 cpfrc_00181 NONE
 cpfrc_00180 NONE
 cpfrc_00179  189666 ..  189676 -  -2.4  -2.89191   GCAGAGGTTCATACA                 GCGG AAA CCCC                 AACAGGATCCGCCCG  40 380
        sigC  183408 ..  183418 -  -6.8  -3.16492   TGAGACGGATGAAGA                 GCAG AAG CTGC                 GCAATGAGTCGCGCA  56 438
 cpfrc_00170  176153 ..  176168 -  -2.5  -2.94099   CTGGGTGAGTACACA              GCTGC GTGAAG GCAAC               AACGTGGGTTATTTG  40 332
        leuA  161216 ..  161243 - -12.8  -4.03234   GTGCGGCCATAGAAA        CCCCACCACA GCTGCTTT TGTGGTGGGG         GAAACTTTAGCTCAG 100 32
 cpfrc_00159 NONE
        mdaA NONE
        dnaQ NONE
 cpfrc_00156 NONE
 cpfrc_00155  157165 ..  157181 - -12.3  -4.03234   CCCCGTGGAGATAAA              GCGCCTT TTC AAGGCGC              ATGAGATATATGTAA  95 152
 cpfrc_00154  156756 ..  156791 - -18.4   -3.3676   GGTAATACGTCATAA    GAGGTGGTCACCGG GTATATGG CCGGCGACCACCTC     TTTTTAAGAGCCTCT 100 46
       gntR1 NONE
 cpfrc_00151 NONE
 cpfrc_00150 NONE
 cpfrc_00149 NONE
 cpfrc_00148  150846 ..  150857 -  -2.2  -3.66288   GACGGGCGAATATAA                TGGC CGCT ACCA                 TGTGCTGGGTGGGGC  50 387
 cpfrc_00142 NONE
 cpfrc_00141 NONE
 cpfrc_00140  142544 ..  142554 -  -6.8  -3.44622   TACGTGGACAATGAA                 CCAG GCG CTGG                 TGGGCGCCGTTGGCT  58 68
        tyrA  133580 ..  133604 -  -2.8  -3.91897   TCGGTGATCGATAAA         CTAGCCCGTGCC TTG GGC-CTGGC-AG         AGCCACTTGCCCAAT  54 435
        pdxR  130893 ..  130903 -  -2.6  -4.98522   AATTTTATATAAAAA                 TTAA GCC TTAA                 GTTAAGTATAGCTAA  71 167
 cpfrc_00129  130108 ..  130147 - -15.9  -2.76696   GGGCGGCGTAATAAT  TGCTAGACCCCACCCGCG TTATT CACGGGTGGGGTCTAA-A  TCATTTATAGGATGT 100 30
 cpfrc_00122  119788 ..  119814 - -13.7  -4.32046   CCGCCAAAAATGAAA         CCCCAGTCCTC TAGGT GAGGGCTGGGG         TTTTGTGCTGTTATG 100 36
 cpfrc_00121  118462 ..  118475 -  -5.2  -3.15249   CACATTCTGTATCAA               CGGC GTTCCG GCCG                ACATGATCCAGCAGC  50 201
 cpfrc_00119 NONE
 cpfrc_00118  115536 ..  115552 -  -9.4  -3.28924   TAGTCGTTTTGAGAA              CGCTGG CCGCC CCAGCG              TTTAGGAAATTTCAG  69 77
 cpfrc_00110  108710 ..  108723 -  -3.1   -3.9392   CTGCAGTGGAAAGAA               TCGAT ATCT ACCGA                GAATTACTCCGTAAG  54 520
 cpfrc_00105 NONE
 cpfrc_00104 NONE
 cpfrc_00103  104217 ..  104239 - -20.6  -4.45168   CTGCTAAAACACAAA           GCCGCCGTGC ACT GCACGGCGGC           TAGAGCGTTTTGCTA 100 38
        aftA NONE
        embB   98697 ..   98751 - -17.9  -3.48276   CGTTCCGTGACAGAA CAGCTCCCCAGTGCGCTGATTGCCA AGGAA TGGCTAAAAGCGCACTAGGGAGCTT TTAGTGGTCCGTGTT 100 26
        pepO NONE
 cpfrc_00096 NONE
        glpF NONE
        glpK   91261 ..   91298 -  -9.2  -4.65916   TCCACCTGAAGAAAA  TCAGGC-TCCCGCCAGAC GCAA GTC-GGCGGGATACCGGA   TAAGGATGGCGGAGA  89 48
        hrpB   83009 ..   83022 -  -6.7   -3.9941   TTTCGGAGAAGCAAA               CACCA CTTT TGGTG                ATGCAGACTTCGGGT  68 310
 cpfrc_00081 NONE
 cpfrc_00080   78121 ..   78133 -  -3.4   -4.3953   CGTAATCACAAGAAA                TCTG AAGAA CAGA                AACAGCAGTGGGAGT  64 60
         rok   70362 ..   70384 - -11.4  -2.87564   GCATGCCGGCAGATA           TGTGCATACT GCC AGCATGCACA           GGGAGCTTGGGGCGG  71 65
         lip   68127 ..   68141 -  -4.2  -3.63895   GGCAAGGATTGGAAA               CCTACC CTT AGCAGG               GAAAACCTACCCTTT  55 234
 cpfrc_00069   67238 ..   67249 -    -3  -3.49687   AGCGGGTAGAAAAAG                CAAA AATT TTTG                 TTTTTTGTAGGGATA  49 69
        ino1   65848 ..   65862 -  -7.1  -2.75343   GCCAGAGCTCTAAAG               CTGCG ATGCG CGCAG               ATGAGCTTAATATCG  52 142
 cpfrc_00064   60834 ..   60868 -  -6.3  -2.91997   CGGGAGAGACAATCA    GGCTTTCTCCCTCGGC GCGC GCCG-GGCTGGAAGCC     CCGCGTTTTTGCCAG  51 165
 cpfrc_00061 NONE
 cpfrc_00060   57899 ..   57939 -  -4.1  -3.68366   TCAGCGTAAAAGTAA CCCCCTGC--CGATCCGC GTAATTTT GCAG-TCGAAGCAGGGGG AGAAATTACTTTTCG  55 31
 cpfrc_00059 NONE
 cpfrc_00058 NONE
 cpfrc_00057   55115 ..   55130 -    -9  -3.14132   CGTTCCCTCGAGCAA              GTTCCG TTAG CGGAAC               TTCAGACCGTTATGT  63 302
 cpfrc_00054 NONE
        sigK NONE
        cskE   50935 ..   50979 -   -10  -3.07344   GCACTGGCCAATAGA GGTGCAGGGCCAACCGAGTAC TGCG GCAC-CGGTTAGCCCCTCACA CTGTGCACGGCAGTC  69 43
 cpfrc_00051   48369 ..   48416 - -14.3  -3.68351   TCCTCACTACTGAAA GCCCCCTGGCAGTTGG--ACTGA GAAA TCAGGAACCAACTGGCAGGGGGC TTTTGTGGGCTGGTG  95 109
 cpfrc_00049 NONE
 cpfrc_00048 NONE
       znuB1 NONE
       znuC1 NONE
       znuA1   41434 ..   41458 - -10.7  -3.59979   GCTGTCTATGGGAAA          GCTCCCCCG TTAAGTT CGAGGGAGC          TGGCTGGCCCAGCGG  79 101
       padR1 NONE
 cpfrc_00043 NONE
 cpfrc_00042   39618 ..   39628 -  -2.4  -4.38154   AGATCGCGTAGAAAA                 CCCC GCG GGGC                 AACTGTGAATTGATA  61 53
 cpfrc_00041 NONE
 cpfrc_00040 NONE
 cpfrc_00039 NONE
        rodA NONE
        pbpA NONE
        pknA NONE
        pknB   29551 ..   29564 -  -6.7  -3.63305   TATATAACGTTGAAA               TGGCT CGCA AGCCA                CGTAATGCAACTAAT  63 91
 cpfrc_00034   29139 ..   29178 -   -21  -3.06501   GATATCGCTAGCTAA  TTAAAGGAAGCCACAGAG TTCT CTCTGTGGCTTCCTTTAT   TATTCTGCGAGACTC 100 95
        fagA   26938 ..   26954 -  -2.9  -2.69449   CGGTATACAAGGAAC              GGCGATG AGT CATCACA              TGTCTCCCTTCCTGC  41 21
        fagB NONE
        fagC   24682 ..   24692 -    -4  -4.11484   TGCAAGGTCTGAAAA                 TAAG ATC CTTA                 CTAAACAAAAAATCG  60 422
 cpfrc_00028   22533 ..   22545 -  -9.1   -2.5919   GAGCATATTAATGTA                CCTGC GGT GCAGG                AACGTTCTGATTGGT  59 144
 cpfrc_00026 NONE
 cpfrc_00025 NONE
 cpfrc_00024   21156 ..   21168 - -10.5  -2.64765   GAACTACAGAACCCA                CGCGG GCA CCGCG                TAATCCTTTATCTTG  69 429
 cpfrc_00023   20759 ..   20787 -  -3.1   -5.1101   TTACGATTGAAAAAA        TTGTTTCCGGGGA GCG TACCTCGAAACAA        TTTTCCTTTGCGTGG  76 290
 cpfrc_00021   19905 ..   19916 -  -4.4  -2.87564   TTATGCCCGTATATA                TGGA GTTA TCCA                 CTGAAATTACACAGA  45 78
 cpfrc_00017   17572 ..   17606 - -12.8  -5.32944   TCGATAAGCAAAAAA     CACCGCCTCTTCCTGA ATC TCGCGGAGAGGCGGTG     TTGTTTACTTGGTGT 100 30
 cpfrc_00008    8695 ..    8708 -  -5.2  -2.87132   CCTGCTCTGGAGACA               GGCC TCTCAT GGCC                GGTTTCCGCGTATGC  49 18
 cpfrc_00007    8198 ..    8252 - -34.7   -4.1523   TTGATTATATATAAA GCGACCTCCGTTGTTGGGCACACCA GAGAT TGATATGCCCAACAACGGAGGTCGC TCGCGTTGTCATTCT 100 214
 cpfrc_00006    7629 ..    7663 - -20.2  -5.27399   TAAGAGACTAAAAAA     CAGGTCGACTCCGA GAAAACT TCGGAGTCGACCTG     AACGCGTTTAGTAGT 100 55
