CNE_2c00640	PWY-6617	adenosine nucleotides degradation III
CNE_2c00660	PWY-6871	3-methylbutanol biosynthesis
CNE_2c00900	PWY-5392	reductive TCA cycle II
CNE_2c00900	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CNE_2c00900	PWY-5690	TCA cycle II (plants and fungi)
CNE_2c00900	PWY-5913	TCA cycle VI (obligate autotrophs)
CNE_2c00900	PWY-6728	methylaspartate cycle
CNE_2c00900	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CNE_2c00900	PWY-7254	TCA cycle VII (acetate-producers)
CNE_2c00900	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CNE_2c01110	PWY-6499	D-glucarate degradation II
CNE_2c01160	PWY-6497	D-galactarate degradation II
CNE_2c01160	PWY-6499	D-glucarate degradation II
CNE_2c01280	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CNE_2c01280	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CNE_2c01280	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CNE_2c01850	PWY-1361	benzoyl-CoA degradation I (aerobic)
CNE_2c01850	PWY-2361	3-oxoadipate degradation
CNE_2c01850	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
CNE_2c02060	PWY-5101	L-isoleucine biosynthesis II
CNE_2c02060	PWY-5103	L-isoleucine biosynthesis III
CNE_2c02060	PWY-5104	L-isoleucine biosynthesis IV
CNE_2c02060	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CNE_2c02130	PWY-723	alkylnitronates degradation
CNE_2c02160	PWY-3821	galactose degradation III
CNE_2c02160	PWY-6317	galactose degradation I (Leloir pathway)
CNE_2c02160	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CNE_2c02160	PWY-6527	stachyose degradation
CNE_2c02160	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CNE_2c02160	PWY-7344	UDP-D-galactose biosynthesis
CNE_2c03050	PWY-1042	glycolysis IV (plant cytosol)
CNE_2c03050	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CNE_2c03050	PWY-5484	glycolysis II (from fructose 6-phosphate)
CNE_2c03050	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CNE_2c03050	PWY-7385	1,3-propanediol biosynthesis (engineered)
CNE_2c03070	PWY-5101	L-isoleucine biosynthesis II
CNE_2c03070	PWY-5103	L-isoleucine biosynthesis III
CNE_2c03070	PWY-5104	L-isoleucine biosynthesis IV
CNE_2c03070	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CNE_2c03120	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CNE_2c03160	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_2c03160	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_2c03520	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CNE_2c03520	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CNE_2c03660	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CNE_2c03700	PWY-6167	flavin biosynthesis II (archaea)
CNE_2c03830	PWY-2582	brassinosteroid biosynthesis II
CNE_2c03830	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CNE_2c03830	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CNE_2c03830	PWY-6948	sitosterol degradation to androstenedione
CNE_2c03830	PWY-699	brassinosteroid biosynthesis I
CNE_2c03830	PWY-7299	progesterone biosynthesis
CNE_2c03980	PWY-5057	L-valine degradation II
CNE_2c03980	PWY-5076	L-leucine degradation III
CNE_2c03980	PWY-5078	L-isoleucine degradation II
CNE_2c03980	PWY-5101	L-isoleucine biosynthesis II
CNE_2c03980	PWY-5103	L-isoleucine biosynthesis III
CNE_2c03980	PWY-5104	L-isoleucine biosynthesis IV
CNE_2c03980	PWY-5108	L-isoleucine biosynthesis V
CNE_2c04010	PWY-6871	3-methylbutanol biosynthesis
CNE_2c04430	PWY-6823	molybdenum cofactor biosynthesis
CNE_2c04430	PWY-6891	thiazole biosynthesis II (Bacillus)
CNE_2c04430	PWY-6892	thiazole biosynthesis I (E. coli)
CNE_2c04430	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CNE_2c04470	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CNE_2c04850	PWY-5418	phenol degradation I (aerobic)
CNE_2c04890	PWY-5418	phenol degradation I (aerobic)
CNE_2c04920	PWY-5419	catechol degradation to 2-oxopent-4-enoate II
CNE_2c04920	PWY-5641	2-nitrotoluene degradation
CNE_2c04950	PWY-5419	catechol degradation to 2-oxopent-4-enoate II
CNE_2c04950	PWY-5647	2-nitrobenzoate degradation I
CNE_2c04950	PWY-5654	2-amino-3-carboxymuconate semialdehyde degradation to 2-oxopentenoate
CNE_2c04950	PWY-6210	2-aminophenol degradation
CNE_2c04950	PWY-6214	3-chlorocatechol degradation III (<i>meta</i> pathway)
CNE_2c04950	PWY-6336	protocatechuate degradation III (<I>para</I>-cleavage pathway)
CNE_2c04950	PWY-7006	4-amino-3-hydroxybenzoate degradation
CNE_2c04950	PWY-7480	2,3-dihydroxybenzoate degradation
CNE_2c04970	PWY-5162	2-oxopentenoate degradation
CNE_2c04970	PWY-5436	L-threonine degradation IV
CNE_2c04970	PWY-5480	pyruvate fermentation to ethanol I
CNE_2c04970	PWY-6587	pyruvate fermentation to ethanol III
CNE_2c04970	PWY-7085	triethylamine degradation
CNE_2c04970	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CNE_2c04980	PWY-5162	2-oxopentenoate degradation
CNE_2c05050	PWY-5532	adenosine nucleotides degradation IV
CNE_2c05050	PWY-7181	pyrimidine deoxyribonucleosides degradation
CNE_2c05070	PWY-5316	nicotine biosynthesis
CNE_2c05070	PWY-5381	pyridine nucleotide cycling (plants)
CNE_2c05070	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CNE_2c05070	PWY-7342	superpathway of nicotine biosynthesis
CNE_2c05150	PWY-5747	2-methylcitrate cycle II
CNE_2c05370	PWY-6788	cellulose degradation II (fungi)
CNE_2c05390	PWY-5381	pyridine nucleotide cycling (plants)
CNE_2c05390	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CNE_2c05390	PWY-6596	adenosine nucleotides degradation I
CNE_2c05390	PWY-6606	guanosine nucleotides degradation II
CNE_2c05390	PWY-6607	guanosine nucleotides degradation I
CNE_2c05390	PWY-6608	guanosine nucleotides degradation III
CNE_2c05390	PWY-7185	UTP and CTP dephosphorylation I
CNE_2c05400	PWY-5162	2-oxopentenoate degradation
CNE_2c05410	PWY-5162	2-oxopentenoate degradation
CNE_2c05410	PWY-5436	L-threonine degradation IV
CNE_2c05410	PWY-5480	pyruvate fermentation to ethanol I
CNE_2c05410	PWY-6587	pyruvate fermentation to ethanol III
CNE_2c05410	PWY-7085	triethylamine degradation
CNE_2c05410	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CNE_2c05650	PWY-381	nitrate reduction II (assimilatory)
CNE_2c05650	PWY-5675	nitrate reduction V (assimilatory)
CNE_2c05650	PWY-6549	L-glutamine biosynthesis III
CNE_2c05650	PWY-6963	ammonia assimilation cycle I
CNE_2c05650	PWY-6964	ammonia assimilation cycle II
CNE_2c05710	PWY-5278	sulfite oxidation III
CNE_2c05710	PWY-5340	sulfate activation for sulfonation
CNE_2c05710	PWY-6683	sulfate reduction III (assimilatory)
CNE_2c05710	PWY-6932	selenate reduction
CNE_2c05720	PWY-5278	sulfite oxidation III
CNE_2c05720	PWY-5340	sulfate activation for sulfonation
CNE_2c05720	PWY-6683	sulfate reduction III (assimilatory)
CNE_2c05720	PWY-6932	selenate reduction
CNE_2c05770	PWY-6167	flavin biosynthesis II (archaea)
CNE_2c05770	PWY-6168	flavin biosynthesis III (fungi)
CNE_2c05770	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CNE_2c06050	PWY-723	alkylnitronates degradation
CNE_2c07040	PWY-723	alkylnitronates degradation
CNE_2c07120	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CNE_2c07120	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CNE_2c07260	PWY-6683	sulfate reduction III (assimilatory)
CNE_2c07350	PWY-1001	cellulose biosynthesis
CNE_2c07590	PWY-5033	nicotinate degradation II
CNE_2c07590	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_2c07590	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_2c07590	PWY-6993	nicotine degradation II (pyrrolidine pathway)
CNE_2c07590	PWY-722	nicotinate degradation I
CNE_2c08460	PWY-2941	L-lysine biosynthesis II
CNE_2c08460	PWY-2942	L-lysine biosynthesis III
CNE_2c08460	PWY-5097	L-lysine biosynthesis VI
CNE_2c08610	PWY-723	alkylnitronates degradation
CNE_2c08960	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CNE_2c09000	PWY-3561	choline biosynthesis III
CNE_2c09000	PWY-7039	phosphatidate metabolism, as a signaling molecule
CNE_2c09220	PWY-1042	glycolysis IV (plant cytosol)
CNE_2c09220	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CNE_2c09220	PWY-5484	glycolysis II (from fructose 6-phosphate)
CNE_2c09220	PWY-5723	Rubisco shunt
CNE_2c09220	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CNE_2c09220	PWY-6886	1-butanol autotrophic biosynthesis
CNE_2c09220	PWY-6901	superpathway of glucose and xylose degradation
CNE_2c09220	PWY-7003	glycerol degradation to butanol
CNE_2c09220	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CNE_2c09220	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CNE_2c09250	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
CNE_2c09250	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
CNE_2c09260	PWY-6497	D-galactarate degradation II
CNE_2c09440	PWY-4041	&gamma;-glutamyl cycle
CNE_2c09440	PWY-5826	hypoglycin biosynthesis
CNE_2c09480	PWY-5691	urate degradation to allantoin I
CNE_2c09480	PWY-7394	urate degradation to allantoin II
CNE_2c09490	PWY-5691	urate degradation to allantoin I
CNE_2c09490	PWY-7394	urate degradation to allantoin II
CNE_2c09520	PWY-5691	urate degradation to allantoin I
CNE_2c09520	PWY-7394	urate degradation to allantoin II
CNE_2c09660	PWY-5451	acetone degradation I (to methylglyoxal)
CNE_2c09660	PWY-5665	vanillin biosynthesis I
CNE_2c09660	PWY-6398	melatonin degradation I
CNE_2c09660	PWY-6992	1,5-anhydrofructose degradation
CNE_2c09660	PWY-7466	acetone degradation III (to propane-1,2-diol)
CNE_2c09710	PWY-7052	cyanophycin metabolism
CNE_2c09880	PWY-3781	aerobic respiration I (cytochrome c)
CNE_2c09880	PWY-4521	arsenite oxidation I (respiratory)
CNE_2c09880	PWY-6692	Fe(II) oxidation
CNE_2c09880	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CNE_2c09880	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
CNE_2c10130	PWY-6420	pyrroloquinoline quinone biosynthesis
CNE_2c10330	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CNE_2c10330	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CNE_2c10330	PWY-6164	3-dehydroquinate biosynthesis I
CNE_2c10400	PWY-5913	TCA cycle VI (obligate autotrophs)
CNE_2c10400	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CNE_2c10400	PWY-6638	sulfolactate degradation III
CNE_2c10400	PWY-6642	(<i>R</i>)-cysteate degradation
CNE_2c10400	PWY-6643	coenzyme M biosynthesis II
CNE_2c10400	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CNE_2c10400	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CNE_2c10400	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CNE_2c10720	PWY-6854	ethylene biosynthesis III (microbes)
CNE_2c11310	PWY-6832	2-aminoethylphosphonate degradation II
CNE_2c11330	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CNE_2c11450	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_2c11450	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_2c11570	PWY-5642	2,4-dinitrotoluene degradation
CNE_2c11570	PWY-6373	acrylate degradation
CNE_2c11690	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CNE_2c11700	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CNE_2c11700	PWY-3162	L-tryptophan degradation V (side chain pathway)
CNE_2c11700	PWY-5057	L-valine degradation II
CNE_2c11700	PWY-5076	L-leucine degradation III
CNE_2c11700	PWY-5078	L-isoleucine degradation II
CNE_2c11700	PWY-5079	L-phenylalanine degradation III
CNE_2c11700	PWY-5082	L-methionine degradation III
CNE_2c11700	PWY-5480	pyruvate fermentation to ethanol I
CNE_2c11700	PWY-5486	pyruvate fermentation to ethanol II
CNE_2c11700	PWY-5751	phenylethanol biosynthesis
CNE_2c11700	PWY-6028	acetoin degradation
CNE_2c11700	PWY-6313	serotonin degradation
CNE_2c11700	PWY-6333	acetaldehyde biosynthesis I
CNE_2c11700	PWY-6342	noradrenaline and adrenaline degradation
CNE_2c11700	PWY-6587	pyruvate fermentation to ethanol III
CNE_2c11700	PWY-6802	salidroside biosynthesis
CNE_2c11700	PWY-6871	3-methylbutanol biosynthesis
CNE_2c11700	PWY-7013	L-1,2-propanediol degradation
CNE_2c11700	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CNE_2c11700	PWY-7118	chitin degradation to ethanol
CNE_2c11700	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CNE_2c11700	PWY-7557	dehydrodiconiferyl alcohol degradation
CNE_2c11720	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_2c11720	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_2c11730	PWY-4261	glycerol degradation I
CNE_2c11730	PWY-6118	glycerol-3-phosphate shuttle
CNE_2c11730	PWY-6952	glycerophosphodiester degradation
CNE_2c11740	PWY-4261	glycerol degradation I
CNE_2c11820	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CNE_2c11840	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CNE_2c11840	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CNE_2c11840	PWY-7242	D-fructuronate degradation
CNE_2c11840	PWY-7310	D-glucosaminate degradation
CNE_2c11940	PWY-6167	flavin biosynthesis II (archaea)
CNE_2c11940	PWY-6168	flavin biosynthesis III (fungi)
CNE_2c12090	PWY-6348	phosphate acquisition
CNE_2c12090	PWY-6357	phosphate utilization in cell wall regeneration
CNE_2c12090	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CNE_2c12090	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CNE_2c12120	PWY-7153	grixazone biosynthesis
CNE_2c12530	PWY-7399	methylphosphonate degradation II
CNE_2c12540	PWY-7399	methylphosphonate degradation II
CNE_2c12560	PWY-7399	methylphosphonate degradation II
CNE_2c12590	PWY-7399	methylphosphonate degradation II
CNE_2c12610	PWY-5532	adenosine nucleotides degradation IV
CNE_2c12620	PWY-5532	adenosine nucleotides degradation IV
CNE_2c12710	PWY-6891	thiazole biosynthesis II (Bacillus)
CNE_2c12710	PWY-6892	thiazole biosynthesis I (E. coli)
CNE_2c12710	PWY-7560	methylerythritol phosphate pathway II
CNE_2c13160	PWY-1341	phenylacetate degradation II (anaerobic)
CNE_2c13160	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CNE_2c13420	PWY-1042	glycolysis IV (plant cytosol)
CNE_2c13420	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CNE_2c13420	PWY-5484	glycolysis II (from fructose 6-phosphate)
CNE_2c13420	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CNE_2c13420	PWY-7385	1,3-propanediol biosynthesis (engineered)
CNE_2c13430	PWY-1042	glycolysis IV (plant cytosol)
CNE_2c13430	PWY-5484	glycolysis II (from fructose 6-phosphate)
CNE_2c13430	PWY-6886	1-butanol autotrophic biosynthesis
CNE_2c13430	PWY-6901	superpathway of glucose and xylose degradation
CNE_2c13430	PWY-7003	glycerol degradation to butanol
CNE_2c13440	PWY-1042	glycolysis IV (plant cytosol)
CNE_2c13440	PWY-5484	glycolysis II (from fructose 6-phosphate)
CNE_2c13440	PWY-6901	superpathway of glucose and xylose degradation
CNE_2c13440	PWY-7003	glycerol degradation to butanol
CNE_2c13450	PWY-181	photorespiration
CNE_2c13460	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CNE_2c13460	PWY-5723	Rubisco shunt
CNE_2c13460	PWY-6891	thiazole biosynthesis II (Bacillus)
CNE_2c13460	PWY-6892	thiazole biosynthesis I (E. coli)
CNE_2c13460	PWY-6901	superpathway of glucose and xylose degradation
CNE_2c13460	PWY-7560	methylerythritol phosphate pathway II
CNE_2c13470	PWY-5723	Rubisco shunt
CNE_2c13480	PWY-5484	glycolysis II (from fructose 6-phosphate)
CNE_2c13490	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CNE_2c13490	PWY-5723	Rubisco shunt
CNE_2c13520	PWY-5532	adenosine nucleotides degradation IV
CNE_2c13520	PWY-5723	Rubisco shunt
CNE_2c13530	PWY-5532	adenosine nucleotides degradation IV
CNE_2c13530	PWY-5723	Rubisco shunt
CNE_2c13630	PWY-3162	L-tryptophan degradation V (side chain pathway)
CNE_2c13630	PWY-5057	L-valine degradation II
CNE_2c13630	PWY-5076	L-leucine degradation III
CNE_2c13630	PWY-5078	L-isoleucine degradation II
CNE_2c13630	PWY-5079	L-phenylalanine degradation III
CNE_2c13630	PWY-5082	L-methionine degradation III
CNE_2c13630	PWY-5480	pyruvate fermentation to ethanol I
CNE_2c13630	PWY-5486	pyruvate fermentation to ethanol II
CNE_2c13630	PWY-5751	phenylethanol biosynthesis
CNE_2c13630	PWY-6028	acetoin degradation
CNE_2c13630	PWY-6313	serotonin degradation
CNE_2c13630	PWY-6333	acetaldehyde biosynthesis I
CNE_2c13630	PWY-6342	noradrenaline and adrenaline degradation
CNE_2c13630	PWY-6587	pyruvate fermentation to ethanol III
CNE_2c13630	PWY-6802	salidroside biosynthesis
CNE_2c13630	PWY-6871	3-methylbutanol biosynthesis
CNE_2c13630	PWY-7013	L-1,2-propanediol degradation
CNE_2c13630	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CNE_2c13630	PWY-7118	chitin degradation to ethanol
CNE_2c13630	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CNE_2c13630	PWY-7557	dehydrodiconiferyl alcohol degradation
CNE_2c13840	PWY-1001	cellulose biosynthesis
CNE_2c13860	PWY-6788	cellulose degradation II (fungi)
CNE_2c13890	PWY-3801	sucrose degradation II (sucrose synthase)
CNE_2c13890	PWY-6527	stachyose degradation
CNE_2c13890	PWY-6981	chitin biosynthesis
CNE_2c13890	PWY-7238	sucrose biosynthesis II
CNE_2c13890	PWY-7343	UDP-glucose biosynthesis
CNE_2c13960	PWY-6655	xanthan biosynthesis
CNE_2c13960	PWY-6658	acetan biosynthesis
CNE_2c14040	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
CNE_2c14050	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
CNE_2c14050	PWY-5739	GDP-D-perosamine biosynthesis
CNE_2c14050	PWY-5740	GDP-L-colitose biosynthesis
CNE_2c14050	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
CNE_2c14060	PWY-5659	GDP-mannose biosynthesis
CNE_2c14060	PWY-6073	alginate biosynthesis I (algal)
CNE_2c14060	PWY-6082	alginate biosynthesis II (bacterial)
CNE_2c14060	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CNE_2c14590	PWY-6823	molybdenum cofactor biosynthesis
CNE_2c14620	PWY-6823	molybdenum cofactor biosynthesis
CNE_2c15000	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CNE_2c15010	PWY-3801	sucrose degradation II (sucrose synthase)
CNE_2c15010	PWY-5054	sorbitol biosynthesis I
CNE_2c15010	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CNE_2c15010	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CNE_2c15010	PWY-5659	GDP-mannose biosynthesis
CNE_2c15010	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CNE_2c15010	PWY-621	sucrose degradation III (sucrose invertase)
CNE_2c15010	PWY-622	starch biosynthesis
CNE_2c15010	PWY-6531	mannitol cycle
CNE_2c15010	PWY-6981	chitin biosynthesis
CNE_2c15010	PWY-7238	sucrose biosynthesis II
CNE_2c15010	PWY-7347	sucrose biosynthesis III
CNE_2c15010	PWY-7385	1,3-propanediol biosynthesis (engineered)
CNE_2c15170	PWY-6823	molybdenum cofactor biosynthesis
CNE_2c15170	PWY-6891	thiazole biosynthesis II (Bacillus)
CNE_2c15170	PWY-6892	thiazole biosynthesis I (E. coli)
CNE_2c15170	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CNE_2c15580	PWY-2622	trehalose biosynthesis IV
CNE_2c15590	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
CNE_2c15590	PWY-622	starch biosynthesis
CNE_2c15610	PWY-5941	glycogen degradation II (eukaryotic)
CNE_2c15610	PWY-6724	starch degradation II
CNE_2c15610	PWY-6737	starch degradation V
CNE_2c15610	PWY-7238	sucrose biosynthesis II
CNE_2c15630	PWY-5941	glycogen degradation II (eukaryotic)
CNE_2c15630	PWY-622	starch biosynthesis
CNE_2c15630	PWY-6731	starch degradation III
CNE_2c15630	PWY-6737	starch degradation V
CNE_2c15630	PWY-7238	sucrose biosynthesis II
CNE_2c15640	PWY-2661	trehalose biosynthesis V
CNE_2c15650	PWY-2661	trehalose biosynthesis V
CNE_2c15770	PWY-6168	flavin biosynthesis III (fungi)
CNE_2c15770	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CNE_2c15820	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CNE_2c15820	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CNE_2c15820	PWY-6936	seleno-amino acid biosynthesis
CNE_2c15820	PWY-702	L-methionine biosynthesis II
CNE_2c15840	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
CNE_2c15850	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
CNE_2c15960	PWY-7183	pyrimidine nucleobases salvage I
CNE_2c15980	PWY-6168	flavin biosynthesis III (fungi)
CNE_2c15980	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CNE_2c16010	PWY-6123	inosine-5'-phosphate biosynthesis I
CNE_2c16010	PWY-6124	inosine-5'-phosphate biosynthesis II
CNE_2c16010	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CNE_2c16010	PWY-7234	inosine-5'-phosphate biosynthesis III
CNE_2c16030	PWY-5392	reductive TCA cycle II
CNE_2c16030	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CNE_2c16030	PWY-5690	TCA cycle II (plants and fungi)
CNE_2c16030	PWY-5913	TCA cycle VI (obligate autotrophs)
CNE_2c16030	PWY-6728	methylaspartate cycle
CNE_2c16030	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CNE_2c16030	PWY-7254	TCA cycle VII (acetate-producers)
CNE_2c16030	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CNE_2c16060	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_2c16060	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_2c16450	PWY-1361	benzoyl-CoA degradation I (aerobic)
CNE_2c16450	PWY-5109	2-methylbutanoate biosynthesis
CNE_2c16450	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CNE_2c16450	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CNE_2c16450	PWY-5177	glutaryl-CoA degradation
CNE_2c16450	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CNE_2c16450	PWY-6435	4-hydroxybenzoate biosynthesis V
CNE_2c16450	PWY-6583	pyruvate fermentation to butanol I
CNE_2c16450	PWY-6863	pyruvate fermentation to hexanol
CNE_2c16450	PWY-6883	pyruvate fermentation to butanol II
CNE_2c16450	PWY-6944	androstenedione degradation
CNE_2c16450	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CNE_2c16450	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CNE_2c16450	PWY-7007	methyl ketone biosynthesis
CNE_2c16450	PWY-7046	4-coumarate degradation (anaerobic)
CNE_2c16450	PWY-7094	fatty acid salvage
CNE_2c16450	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CNE_2c16450	PWY-735	jasmonic acid biosynthesis
CNE_2c16450	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CNE_2c16550	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CNE_2c16550	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CNE_2c16550	PWY-5989	stearate biosynthesis II (bacteria and plants)
CNE_2c16550	PWY-5994	palmitate biosynthesis I (animals and fungi)
CNE_2c16550	PWY-6113	superpathway of mycolate biosynthesis
CNE_2c16550	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CNE_2c16550	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CNE_2c16550	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CNE_2c16550	PWYG-321	mycolate biosynthesis
CNE_2c16710	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
CNE_2c16710	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CNE_2c16760	PWY-1881	formate oxidation to CO<sub>2</sub>
CNE_2c16760	PWY-5497	purine nucleobases degradation II (anaerobic)
CNE_2c16760	PWY-6696	oxalate degradation III
CNE_2c16860	PWY-6695	oxalate degradation II
CNE_2c16870	PWY-6695	oxalate degradation II
CNE_2c16870	PWY-6696	oxalate degradation III
CNE_2c16920	PWY-6695	oxalate degradation II
CNE_2c16940	PWY-6654	phosphopantothenate biosynthesis III
CNE_2c17070	PWY-723	alkylnitronates degradation
CNE_2c17160	PWY-6654	phosphopantothenate biosynthesis III
CNE_2c17550	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CNE_2c17820	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_2c17820	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_2c17860	PWY-2941	L-lysine biosynthesis II
CNE_2c17860	PWY-2942	L-lysine biosynthesis III
CNE_2c17860	PWY-5097	L-lysine biosynthesis VI
CNE_2c17950	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CNE_2c17950	PWY-7494	choline degradation IV
CNE_2c18070	PWY-5350	thiosulfate disproportionation III (rhodanese)
CNE_2c18080	PWY-5331	taurine biosynthesis
CNE_2c18200	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CNE_2c18200	PWY-6416	quinate degradation II
CNE_2c18200	PWY-6707	gallate biosynthesis
CNE_2c18240	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CNE_2c18260	PWY-1281	sulfoacetaldehyde degradation I
CNE_2c18260	PWY-6637	sulfolactate degradation II
CNE_2c18270	PWY-1281	sulfoacetaldehyde degradation I
CNE_2c18270	PWY-5482	pyruvate fermentation to acetate II
CNE_2c18270	PWY-5485	pyruvate fermentation to acetate IV
CNE_2c18270	PWY-5497	purine nucleobases degradation II (anaerobic)
CNE_2c18270	PWY-6637	sulfolactate degradation II
CNE_2c18300	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CNE_2c18430	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
CNE_2c18440	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
CNE_2c18730	PWY-101	photosynthesis light reactions
CNE_2c18730	PWY-1361	benzoyl-CoA degradation I (aerobic)
CNE_2c18730	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
CNE_2c18740	PWY-1361	benzoyl-CoA degradation I (aerobic)
CNE_2c18750	PWY-1361	benzoyl-CoA degradation I (aerobic)
CNE_2c18760	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CNE_2c18920	PWY-5913	TCA cycle VI (obligate autotrophs)
CNE_2c18920	PWY-6549	L-glutamine biosynthesis III
CNE_2c18920	PWY-6728	methylaspartate cycle
CNE_2c18920	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CNE_2c18920	PWY-7124	ethylene biosynthesis V (engineered)
CNE_2c18920	PWY-7254	TCA cycle VII (acetate-producers)
CNE_2c18920	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CNE_2c19160	PWY-6832	2-aminoethylphosphonate degradation II
CNE_2c19190	PWY-2201	folate transformations I
CNE_2c19190	PWY-5497	purine nucleobases degradation II (anaerobic)
CNE_2c19320	PWY-5663	tetrahydrobiopterin biosynthesis I
CNE_2c19320	PWY-5664	tetrahydrobiopterin biosynthesis II
CNE_2c19320	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CNE_2c19320	PWY-6703	preQ<sub>0</sub> biosynthesis
CNE_2c19320	PWY-6983	tetrahydrobiopterin biosynthesis III
CNE_2c19320	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CNE_2c19650	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CNE_2c19810	PWY-6019	pseudouridine degradation
CNE_2c19840	PWY-4041	&gamma;-glutamyl cycle
CNE_2c19840	PWY-5826	hypoglycin biosynthesis
CNE_2c20130	PWY-3781	aerobic respiration I (cytochrome c)
CNE_2c20130	PWY-4521	arsenite oxidation I (respiratory)
CNE_2c20130	PWY-6692	Fe(II) oxidation
CNE_2c20130	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CNE_2c20730	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
CNE_2c20730	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
CNE_2c20830	PWY-5033	nicotinate degradation II
CNE_2c20830	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_2c20830	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_2c20830	PWY-6993	nicotine degradation II (pyrrolidine pathway)
CNE_2c20830	PWY-722	nicotinate degradation I
CNE_2c20950	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CNE_2c20950	PWY-7494	choline degradation IV
CNE_2c21250	PWY-5316	nicotine biosynthesis
CNE_2c21250	PWY-5381	pyridine nucleotide cycling (plants)
CNE_2c21250	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CNE_2c21250	PWY-7342	superpathway of nicotine biosynthesis
CNE_2c21530	PWY-5152	leucodelphinidin biosynthesis
CNE_2c21540	PWY-7560	methylerythritol phosphate pathway II
CNE_2c21560	PWY-5129	sphingolipid biosynthesis (plants)
CNE_2c21850	PWY-6098	diploterol and cycloartenol biosynthesis
CNE_2c21850	PWY-7072	hopanoid biosynthesis (bacteria)
CNE_2c22070	PWY-5344	L-homocysteine biosynthesis
CNE_2c22070	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
CNE_2c22380	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CNE_2c22380	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CNE_2c22380	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CNE_2c22380	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CNE_2c22530	PWY-5194	siroheme biosynthesis
CNE_2c22530	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CNE_2c22540	PWY-6215	4-chlorobenzoate degradation
CNE_2c22560	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
CNE_2c22570	PWY-6123	inosine-5'-phosphate biosynthesis I
CNE_2c22570	PWY-6124	inosine-5'-phosphate biosynthesis II
CNE_2c22570	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CNE_2c22570	PWY-7234	inosine-5'-phosphate biosynthesis III
CNE_2c22730	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CNE_2c22880	PWY-3781	aerobic respiration I (cytochrome c)
CNE_2c22880	PWY-4521	arsenite oxidation I (respiratory)
CNE_2c22880	PWY-6692	Fe(II) oxidation
CNE_2c22880	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CNE_2c22960	PWY-723	alkylnitronates degradation
CNE_2c23370	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CNE_2c23420	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CNE_2c23430	PWY-6936	seleno-amino acid biosynthesis
CNE_2c23720	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
CNE_2c23720	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
CNE_2c23850	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_2c23850	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_2c23930	PWY-6871	3-methylbutanol biosynthesis
CNE_2c24090	PWY-5367	petroselinate biosynthesis
CNE_2c24090	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CNE_2c24090	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CNE_2c24090	PWY-5989	stearate biosynthesis II (bacteria and plants)
CNE_2c24090	PWY-5994	palmitate biosynthesis I (animals and fungi)
CNE_2c24090	PWY-6113	superpathway of mycolate biosynthesis
CNE_2c24090	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CNE_2c24090	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CNE_2c24090	PWY-6951	CNE_2c24090
CNE_2c24090	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
CNE_2c24090	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CNE_2c24090	PWYG-321	mycolate biosynthesis
CNE_2c24380	PWY-4983	L-citrulline-nitric oxide cycle
CNE_2c24380	PWY-4984	urea cycle
CNE_2c24380	PWY-5	canavanine biosynthesis
CNE_2c24380	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CNE_2c24380	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CNE_2c24740	PWY-2723	trehalose degradation V
CNE_2c24740	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CNE_2c24740	PWY-5661	GDP-glucose biosynthesis
CNE_2c24740	PWY-7238	sucrose biosynthesis II
CNE_2c24740	PWY-7385	1,3-propanediol biosynthesis (engineered)
CNE_2c24750	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CNE_2c24750	PWY-6855	chitin degradation I (archaea)
CNE_2c24750	PWY-6906	chitin derivatives degradation
CNE_2c24760	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CNE_2c24770	PWY-5101	L-isoleucine biosynthesis II
CNE_2c24770	PWY-5103	L-isoleucine biosynthesis III
CNE_2c24770	PWY-5104	L-isoleucine biosynthesis IV
CNE_2c24770	PWY-7111	pyruvate fermentation to isobutanol (engineered)
