CNE_1c00130	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CNE_1c00190	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CNE_1c00190	PWY-3162	L-tryptophan degradation V (side chain pathway)
CNE_1c00190	PWY-5057	L-valine degradation II
CNE_1c00190	PWY-5076	L-leucine degradation III
CNE_1c00190	PWY-5078	L-isoleucine degradation II
CNE_1c00190	PWY-5079	L-phenylalanine degradation III
CNE_1c00190	PWY-5082	L-methionine degradation III
CNE_1c00190	PWY-5480	pyruvate fermentation to ethanol I
CNE_1c00190	PWY-5486	pyruvate fermentation to ethanol II
CNE_1c00190	PWY-5751	phenylethanol biosynthesis
CNE_1c00190	PWY-6028	acetoin degradation
CNE_1c00190	PWY-6313	serotonin degradation
CNE_1c00190	PWY-6333	acetaldehyde biosynthesis I
CNE_1c00190	PWY-6342	noradrenaline and adrenaline degradation
CNE_1c00190	PWY-6587	pyruvate fermentation to ethanol III
CNE_1c00190	PWY-6802	salidroside biosynthesis
CNE_1c00190	PWY-6871	3-methylbutanol biosynthesis
CNE_1c00190	PWY-7013	L-1,2-propanediol degradation
CNE_1c00190	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CNE_1c00190	PWY-7118	chitin degradation to ethanol
CNE_1c00190	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CNE_1c00190	PWY-7557	dehydrodiconiferyl alcohol degradation
CNE_1c00640	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c00640	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c00660	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c00660	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c00930	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CNE_1c00930	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CNE_1c00930	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CNE_1c00930	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CNE_1c01020	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CNE_1c01130	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CNE_1c01130	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CNE_1c01140	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CNE_1c01140	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CNE_1c01140	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CNE_1c01260	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CNE_1c01260	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CNE_1c01270	PWY-3961	phosphopantothenate biosynthesis II
CNE_1c01420	PWY-2201	folate transformations I
CNE_1c01420	PWY-3841	folate transformations II
CNE_1c01600	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CNE_1c01600	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CNE_1c01600	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CNE_1c01600	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CNE_1c01680	PWY-4381	fatty acid biosynthesis initiation I
CNE_1c01680	PWY-5743	3-hydroxypropanoate cycle
CNE_1c01680	PWY-5744	glyoxylate assimilation
CNE_1c01680	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CNE_1c01680	PWY-6679	jadomycin biosynthesis
CNE_1c01680	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CNE_1c01720	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CNE_1c01720	PWY-6578	8-amino-7-oxononanoate biosynthesis III
CNE_1c01720	PWY-7147	8-amino-7-oxononanoate biosynthesis II
CNE_1c01730	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CNE_1c01740	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CNE_1c01770	PWY-5074	mevalonate degradation
CNE_1c01980	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CNE_1c01980	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CNE_1c02010	PWY-5344	L-homocysteine biosynthesis
CNE_1c02080	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CNE_1c02080	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CNE_1c02100	PWY-5686	UMP biosynthesis
CNE_1c02130	PWY-2941	L-lysine biosynthesis II
CNE_1c02130	PWY-5097	L-lysine biosynthesis VI
CNE_1c02160	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CNE_1c02160	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
CNE_1c02190	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CNE_1c02190	PWY-7494	choline degradation IV
CNE_1c02220	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
CNE_1c02250	PWY-6891	thiazole biosynthesis II (Bacillus)
CNE_1c02250	PWY-6892	thiazole biosynthesis I (E. coli)
CNE_1c02260	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CNE_1c02260	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CNE_1c02260	PWY-6897	thiamin salvage II
CNE_1c02260	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CNE_1c02260	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CNE_1c02260	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
CNE_1c02260	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CNE_1c02320	PWY-6910	hydroxymethylpyrimidine salvage
CNE_1c02320	PWY-7356	thiamin salvage IV (yeast)
CNE_1c02320	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CNE_1c02330	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CNE_1c02350	PWY-2201	folate transformations I
CNE_1c02350	PWY-3841	folate transformations II
CNE_1c02560	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CNE_1c02560	PWY-6148	tetrahydromethanopterin biosynthesis
CNE_1c02560	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CNE_1c02560	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CNE_1c02590	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CNE_1c02600	PWY-6749	CMP-legionaminate biosynthesis I
CNE_1c02790	PWY-5642	2,4-dinitrotoluene degradation
CNE_1c02790	PWY-6373	acrylate degradation
CNE_1c02900	PWY-5743	3-hydroxypropanoate cycle
CNE_1c02900	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CNE_1c02900	PWY-6728	methylaspartate cycle
CNE_1c02900	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CNE_1c02920	PWY-1361	benzoyl-CoA degradation I (aerobic)
CNE_1c02920	PWY-5109	2-methylbutanoate biosynthesis
CNE_1c02920	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CNE_1c02920	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CNE_1c02920	PWY-5177	glutaryl-CoA degradation
CNE_1c02920	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CNE_1c02920	PWY-6435	4-hydroxybenzoate biosynthesis V
CNE_1c02920	PWY-6583	pyruvate fermentation to butanol I
CNE_1c02920	PWY-6863	pyruvate fermentation to hexanol
CNE_1c02920	PWY-6883	pyruvate fermentation to butanol II
CNE_1c02920	PWY-6944	androstenedione degradation
CNE_1c02920	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CNE_1c02920	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CNE_1c02920	PWY-7007	methyl ketone biosynthesis
CNE_1c02920	PWY-7046	4-coumarate degradation (anaerobic)
CNE_1c02920	PWY-7094	fatty acid salvage
CNE_1c02920	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CNE_1c02920	PWY-735	jasmonic acid biosynthesis
CNE_1c02920	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CNE_1c03050	PWY-723	alkylnitronates degradation
CNE_1c03140	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CNE_1c03140	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CNE_1c03270	PWY-6906	chitin derivatives degradation
CNE_1c03270	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
CNE_1c03270	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
CNE_1c03290	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CNE_1c03300	PWY-3801	sucrose degradation II (sucrose synthase)
CNE_1c03300	PWY-5054	sorbitol biosynthesis I
CNE_1c03300	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CNE_1c03300	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CNE_1c03300	PWY-5659	GDP-mannose biosynthesis
CNE_1c03300	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CNE_1c03300	PWY-621	sucrose degradation III (sucrose invertase)
CNE_1c03300	PWY-622	starch biosynthesis
CNE_1c03300	PWY-6531	mannitol cycle
CNE_1c03300	PWY-6981	chitin biosynthesis
CNE_1c03300	PWY-7238	sucrose biosynthesis II
CNE_1c03300	PWY-7347	sucrose biosynthesis III
CNE_1c03300	PWY-7385	1,3-propanediol biosynthesis (engineered)
CNE_1c03310	PWY-3801	sucrose degradation II (sucrose synthase)
CNE_1c03310	PWY-5054	sorbitol biosynthesis I
CNE_1c03310	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CNE_1c03310	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CNE_1c03310	PWY-5659	GDP-mannose biosynthesis
CNE_1c03310	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CNE_1c03310	PWY-621	sucrose degradation III (sucrose invertase)
CNE_1c03310	PWY-622	starch biosynthesis
CNE_1c03310	PWY-6531	mannitol cycle
CNE_1c03310	PWY-6981	chitin biosynthesis
CNE_1c03310	PWY-7238	sucrose biosynthesis II
CNE_1c03310	PWY-7347	sucrose biosynthesis III
CNE_1c03310	PWY-7385	1,3-propanediol biosynthesis (engineered)
CNE_1c03320	PWY-3801	sucrose degradation II (sucrose synthase)
CNE_1c03320	PWY-5054	sorbitol biosynthesis I
CNE_1c03320	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CNE_1c03320	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CNE_1c03320	PWY-5659	GDP-mannose biosynthesis
CNE_1c03320	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CNE_1c03320	PWY-621	sucrose degradation III (sucrose invertase)
CNE_1c03320	PWY-622	starch biosynthesis
CNE_1c03320	PWY-6531	mannitol cycle
CNE_1c03320	PWY-6981	chitin biosynthesis
CNE_1c03320	PWY-7238	sucrose biosynthesis II
CNE_1c03320	PWY-7347	sucrose biosynthesis III
CNE_1c03320	PWY-7385	1,3-propanediol biosynthesis (engineered)
CNE_1c03480	PWY-1622	formaldehyde assimilation I (serine pathway)
CNE_1c03480	PWY-5484	glycolysis II (from fructose 6-phosphate)
CNE_1c03520	PWY-5667	CDP-diacylglycerol biosynthesis I
CNE_1c03520	PWY-5981	CDP-diacylglycerol biosynthesis III
CNE_1c03570	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CNE_1c03600	PWY-3781	aerobic respiration I (cytochrome c)
CNE_1c03600	PWY-4521	arsenite oxidation I (respiratory)
CNE_1c03600	PWY-6692	Fe(II) oxidation
CNE_1c03600	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CNE_1c03910	PWY-7560	methylerythritol phosphate pathway II
CNE_1c04110	PWY-6605	adenine and adenosine salvage II
CNE_1c04110	PWY-6610	adenine and adenosine salvage IV
CNE_1c04460	PWY-6700	queuosine biosynthesis
CNE_1c04520	PWY-7158	L-phenylalanine degradation V
CNE_1c04620	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c04620	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c04660	PWY-5839	menaquinol-7 biosynthesis
CNE_1c04660	PWY-5844	menaquinol-9 biosynthesis
CNE_1c04660	PWY-5849	menaquinol-6 biosynthesis
CNE_1c04660	PWY-5890	menaquinol-10 biosynthesis
CNE_1c04660	PWY-5891	menaquinol-11 biosynthesis
CNE_1c04660	PWY-5892	menaquinol-12 biosynthesis
CNE_1c04660	PWY-5895	menaquinol-13 biosynthesis
CNE_1c04830	PWY-1361	benzoyl-CoA degradation I (aerobic)
CNE_1c04830	PWY-5109	2-methylbutanoate biosynthesis
CNE_1c04830	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CNE_1c04830	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CNE_1c04830	PWY-5177	glutaryl-CoA degradation
CNE_1c04830	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CNE_1c04830	PWY-6435	4-hydroxybenzoate biosynthesis V
CNE_1c04830	PWY-6583	pyruvate fermentation to butanol I
CNE_1c04830	PWY-6863	pyruvate fermentation to hexanol
CNE_1c04830	PWY-6883	pyruvate fermentation to butanol II
CNE_1c04830	PWY-6944	androstenedione degradation
CNE_1c04830	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CNE_1c04830	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CNE_1c04830	PWY-7007	methyl ketone biosynthesis
CNE_1c04830	PWY-7046	4-coumarate degradation (anaerobic)
CNE_1c04830	PWY-7094	fatty acid salvage
CNE_1c04830	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CNE_1c04830	PWY-735	jasmonic acid biosynthesis
CNE_1c04830	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CNE_1c05010	PWY-5686	UMP biosynthesis
CNE_1c05230	PWY-6123	inosine-5'-phosphate biosynthesis I
CNE_1c05230	PWY-6124	inosine-5'-phosphate biosynthesis II
CNE_1c05230	PWY-7234	inosine-5'-phosphate biosynthesis III
CNE_1c05390	PWY-5386	methylglyoxal degradation I
CNE_1c05690	PWY-5392	reductive TCA cycle II
CNE_1c05690	PWY-5537	pyruvate fermentation to acetate V
CNE_1c05690	PWY-5538	pyruvate fermentation to acetate VI
CNE_1c05690	PWY-5690	TCA cycle II (plants and fungi)
CNE_1c05690	PWY-5913	TCA cycle VI (obligate autotrophs)
CNE_1c05690	PWY-6728	methylaspartate cycle
CNE_1c05690	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CNE_1c05690	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CNE_1c05700	PWY-5392	reductive TCA cycle II
CNE_1c05700	PWY-5537	pyruvate fermentation to acetate V
CNE_1c05700	PWY-5538	pyruvate fermentation to acetate VI
CNE_1c05700	PWY-5690	TCA cycle II (plants and fungi)
CNE_1c05700	PWY-5913	TCA cycle VI (obligate autotrophs)
CNE_1c05700	PWY-6728	methylaspartate cycle
CNE_1c05700	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CNE_1c05700	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CNE_1c05870	PWY-5057	L-valine degradation II
CNE_1c05870	PWY-5076	L-leucine degradation III
CNE_1c05870	PWY-5078	L-isoleucine degradation II
CNE_1c05870	PWY-5101	L-isoleucine biosynthesis II
CNE_1c05870	PWY-5103	L-isoleucine biosynthesis III
CNE_1c05870	PWY-5104	L-isoleucine biosynthesis IV
CNE_1c05870	PWY-5108	L-isoleucine biosynthesis V
CNE_1c05930	PWY-1042	glycolysis IV (plant cytosol)
CNE_1c05930	PWY-5484	glycolysis II (from fructose 6-phosphate)
CNE_1c05930	PWY-6886	1-butanol autotrophic biosynthesis
CNE_1c05930	PWY-6901	superpathway of glucose and xylose degradation
CNE_1c05930	PWY-7003	glycerol degradation to butanol
CNE_1c05940	PWY-1042	glycolysis IV (plant cytosol)
CNE_1c05940	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CNE_1c05940	PWY-5484	glycolysis II (from fructose 6-phosphate)
CNE_1c05940	PWY-5723	Rubisco shunt
CNE_1c05940	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CNE_1c05940	PWY-6886	1-butanol autotrophic biosynthesis
CNE_1c05940	PWY-6901	superpathway of glucose and xylose degradation
CNE_1c05940	PWY-7003	glycerol degradation to butanol
CNE_1c05940	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CNE_1c05940	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CNE_1c05950	PWY-1042	glycolysis IV (plant cytosol)
CNE_1c05950	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CNE_1c05950	PWY-5484	glycolysis II (from fructose 6-phosphate)
CNE_1c05950	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CNE_1c05950	PWY-7385	1,3-propanediol biosynthesis (engineered)
CNE_1c05960	PWY-6123	inosine-5'-phosphate biosynthesis I
CNE_1c05960	PWY-6124	inosine-5'-phosphate biosynthesis II
CNE_1c05960	PWY-7234	inosine-5'-phosphate biosynthesis III
CNE_1c05970	PWY-6123	inosine-5'-phosphate biosynthesis I
CNE_1c05970	PWY-7234	inosine-5'-phosphate biosynthesis III
CNE_1c06020	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CNE_1c06020	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CNE_1c06300	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CNE_1c06310	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CNE_1c06310	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CNE_1c06380	PWY-6854	ethylene biosynthesis III (microbes)
CNE_1c06490	PWY-1881	formate oxidation to CO<sub>2</sub>
CNE_1c06490	PWY-5497	purine nucleobases degradation II (anaerobic)
CNE_1c06490	PWY-6696	oxalate degradation III
CNE_1c06570	PWY-5482	pyruvate fermentation to acetate II
CNE_1c06570	PWY-5485	pyruvate fermentation to acetate IV
CNE_1c06570	PWY-5497	purine nucleobases degradation II (anaerobic)
CNE_1c06580	PWY-1281	sulfoacetaldehyde degradation I
CNE_1c06580	PWY-5482	pyruvate fermentation to acetate II
CNE_1c06580	PWY-5485	pyruvate fermentation to acetate IV
CNE_1c06580	PWY-5497	purine nucleobases degradation II (anaerobic)
CNE_1c06580	PWY-6637	sulfolactate degradation II
CNE_1c06600	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CNE_1c06600	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CNE_1c06600	PWY-5989	stearate biosynthesis II (bacteria and plants)
CNE_1c06600	PWY-6113	superpathway of mycolate biosynthesis
CNE_1c06600	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CNE_1c06600	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CNE_1c06600	PWY-7096	triclosan resistance
CNE_1c06600	PWYG-321	mycolate biosynthesis
CNE_1c06790	PWY-4981	L-proline biosynthesis II (from arginine)
CNE_1c06880	PWY-5028	L-histidine degradation II
CNE_1c06880	PWY-5030	L-histidine degradation III
CNE_1c07400	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CNE_1c07550	PWY-5381	pyridine nucleotide cycling (plants)
CNE_1c07550	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CNE_1c07740	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CNE_1c07850	PWY-7052	cyanophycin metabolism
CNE_1c07860	PWY-7052	cyanophycin metabolism
CNE_1c07960	PWY-4041	&gamma;-glutamyl cycle
CNE_1c07960	PWY-5826	hypoglycin biosynthesis
CNE_1c07980	PWY-181	photorespiration
CNE_1c07990	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
CNE_1c07990	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
CNE_1c07990	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
CNE_1c07990	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
CNE_1c07990	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
CNE_1c07990	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
CNE_1c07990	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
CNE_1c07990	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
CNE_1c07990	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
CNE_1c07990	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
CNE_1c08040	PWY-3461	L-tyrosine biosynthesis II
CNE_1c08040	PWY-3462	L-phenylalanine biosynthesis II
CNE_1c08040	PWY-6120	L-tyrosine biosynthesis III
CNE_1c08040	PWY-6627	salinosporamide A biosynthesis
CNE_1c08040	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
CNE_1c08070	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CNE_1c08090	PWY-7205	CMP phosphorylation
CNE_1c08150	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
CNE_1c08200	PWY-6936	seleno-amino acid biosynthesis
CNE_1c08440	PWY-6829	tRNA methylation (yeast)
CNE_1c08440	PWY-7285	methylwyosine biosynthesis
CNE_1c08440	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CNE_1c08610	PWY-5381	pyridine nucleotide cycling (plants)
CNE_1c08610	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CNE_1c08620	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CNE_1c08620	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CNE_1c08630	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CNE_1c08630	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CNE_1c08630	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CNE_1c08680	PWY-7183	pyrimidine nucleobases salvage I
CNE_1c08730	PWY-5033	nicotinate degradation II
CNE_1c08730	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c08730	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c08730	PWY-6993	nicotine degradation II (pyrrolidine pathway)
CNE_1c08730	PWY-722	nicotinate degradation I
CNE_1c08980	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CNE_1c09030	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CNE_1c09380	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c09380	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c09420	PWY-5484	glycolysis II (from fructose 6-phosphate)
CNE_1c09450	PWY-1281	sulfoacetaldehyde degradation I
CNE_1c09450	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CNE_1c09450	PWY-5482	pyruvate fermentation to acetate II
CNE_1c09450	PWY-5485	pyruvate fermentation to acetate IV
CNE_1c09450	PWY-5497	purine nucleobases degradation II (anaerobic)
CNE_1c09450	PWY-6637	sulfolactate degradation II
CNE_1c09450	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CNE_1c09480	PWY-5691	urate degradation to allantoin I
CNE_1c09480	PWY-7394	urate degradation to allantoin II
CNE_1c09520	PWY-5691	urate degradation to allantoin I
CNE_1c09520	PWY-7394	urate degradation to allantoin II
CNE_1c09560	PWY-5497	purine nucleobases degradation II (anaerobic)
CNE_1c09560	PWY-6606	guanosine nucleotides degradation II
CNE_1c09560	PWY-6608	guanosine nucleotides degradation III
CNE_1c09560	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CNE_1c09570	PWY-6610	adenine and adenosine salvage IV
CNE_1c09590	PWY-5497	purine nucleobases degradation II (anaerobic)
CNE_1c09590	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CNE_1c09590	PWY-6538	caffeine degradation III (bacteria, via demethylation)
CNE_1c09590	PWY-6596	adenosine nucleotides degradation I
CNE_1c09590	PWY-6606	guanosine nucleotides degradation II
CNE_1c09590	PWY-6607	guanosine nucleotides degradation I
CNE_1c09590	PWY-6608	guanosine nucleotides degradation III
CNE_1c09590	PWY-6999	theophylline degradation
CNE_1c09600	PWY-5497	purine nucleobases degradation II (anaerobic)
CNE_1c09600	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CNE_1c09600	PWY-6538	caffeine degradation III (bacteria, via demethylation)
CNE_1c09600	PWY-6596	adenosine nucleotides degradation I
CNE_1c09600	PWY-6606	guanosine nucleotides degradation II
CNE_1c09600	PWY-6607	guanosine nucleotides degradation I
CNE_1c09600	PWY-6608	guanosine nucleotides degradation III
CNE_1c09600	PWY-6999	theophylline degradation
CNE_1c09700	PWY-7039	phosphatidate metabolism, as a signaling molecule
CNE_1c09780	PWY-5101	L-isoleucine biosynthesis II
CNE_1c09780	PWY-5103	L-isoleucine biosynthesis III
CNE_1c09780	PWY-5104	L-isoleucine biosynthesis IV
CNE_1c09780	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CNE_1c09780	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CNE_1c09780	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CNE_1c09780	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CNE_1c09790	PWY-5101	L-isoleucine biosynthesis II
CNE_1c09790	PWY-5103	L-isoleucine biosynthesis III
CNE_1c09790	PWY-5104	L-isoleucine biosynthesis IV
CNE_1c09790	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CNE_1c09790	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CNE_1c09790	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CNE_1c09790	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CNE_1c09800	PWY-5101	L-isoleucine biosynthesis II
CNE_1c09800	PWY-5103	L-isoleucine biosynthesis III
CNE_1c09800	PWY-5104	L-isoleucine biosynthesis IV
CNE_1c09800	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CNE_1c09810	PWY-5669	phosphatidylethanolamine biosynthesis I
CNE_1c09820	PWY-5669	phosphatidylethanolamine biosynthesis I
CNE_1c09840	PWY-6871	3-methylbutanol biosynthesis
CNE_1c09900	PWY-1042	glycolysis IV (plant cytosol)
CNE_1c09900	PWY-5484	glycolysis II (from fructose 6-phosphate)
CNE_1c09900	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CNE_1c09900	PWY-7003	glycerol degradation to butanol
CNE_1c10050	PWY-3781	aerobic respiration I (cytochrome c)
CNE_1c10050	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CNE_1c10050	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CNE_1c10050	PWY-6692	Fe(II) oxidation
CNE_1c10150	PWY-3781	aerobic respiration I (cytochrome c)
CNE_1c10150	PWY-4521	arsenite oxidation I (respiratory)
CNE_1c10150	PWY-6692	Fe(II) oxidation
CNE_1c10150	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CNE_1c10150	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
CNE_1c10240	PWY-5704	urea degradation II
CNE_1c10260	PWY-5704	urea degradation II
CNE_1c10270	PWY-5704	urea degradation II
CNE_1c10420	PWY-4041	&gamma;-glutamyl cycle
CNE_1c10420	PWY-5826	hypoglycin biosynthesis
CNE_1c10460	PWY-1361	benzoyl-CoA degradation I (aerobic)
CNE_1c10460	PWY-5109	2-methylbutanoate biosynthesis
CNE_1c10460	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CNE_1c10460	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CNE_1c10460	PWY-5177	glutaryl-CoA degradation
CNE_1c10460	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CNE_1c10460	PWY-6435	4-hydroxybenzoate biosynthesis V
CNE_1c10460	PWY-6583	pyruvate fermentation to butanol I
CNE_1c10460	PWY-6863	pyruvate fermentation to hexanol
CNE_1c10460	PWY-6883	pyruvate fermentation to butanol II
CNE_1c10460	PWY-6944	androstenedione degradation
CNE_1c10460	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CNE_1c10460	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CNE_1c10460	PWY-7007	methyl ketone biosynthesis
CNE_1c10460	PWY-7046	4-coumarate degradation (anaerobic)
CNE_1c10460	PWY-7094	fatty acid salvage
CNE_1c10460	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CNE_1c10460	PWY-735	jasmonic acid biosynthesis
CNE_1c10460	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CNE_1c10650	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CNE_1c10650	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CNE_1c10650	PWY-6164	3-dehydroquinate biosynthesis I
CNE_1c10740	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CNE_1c10740	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CNE_1c10740	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CNE_1c10810	PWY-6803	phosphatidylcholine acyl editing
CNE_1c10810	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
CNE_1c10810	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
CNE_1c10810	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
CNE_1c10930	PWY-5913	TCA cycle VI (obligate autotrophs)
CNE_1c10930	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CNE_1c10930	PWY-6638	sulfolactate degradation III
CNE_1c10930	PWY-6642	(<i>R</i>)-cysteate degradation
CNE_1c10930	PWY-6643	coenzyme M biosynthesis II
CNE_1c10930	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CNE_1c10930	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CNE_1c10930	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CNE_1c11010	PWY-6823	molybdenum cofactor biosynthesis
CNE_1c11010	PWY-6891	thiazole biosynthesis II (Bacillus)
CNE_1c11010	PWY-6892	thiazole biosynthesis I (E. coli)
CNE_1c11010	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CNE_1c11240	PWY-5101	L-isoleucine biosynthesis II
CNE_1c11240	PWY-5103	L-isoleucine biosynthesis III
CNE_1c11240	PWY-5104	L-isoleucine biosynthesis IV
CNE_1c11240	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CNE_1c11250	PWY-5530	sorbitol biosynthesis II
CNE_1c11250	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CNE_1c11310	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CNE_1c11310	PWY-7177	UTP and CTP dephosphorylation II
CNE_1c11310	PWY-7185	UTP and CTP dephosphorylation I
CNE_1c11320	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CNE_1c11320	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
CNE_1c11340	PWY-1042	glycolysis IV (plant cytosol)
CNE_1c11340	PWY-1622	formaldehyde assimilation I (serine pathway)
CNE_1c11340	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CNE_1c11340	PWY-5484	glycolysis II (from fructose 6-phosphate)
CNE_1c11340	PWY-5723	Rubisco shunt
CNE_1c11340	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CNE_1c11340	PWY-6886	1-butanol autotrophic biosynthesis
CNE_1c11340	PWY-6901	superpathway of glucose and xylose degradation
CNE_1c11340	PWY-7003	glycerol degradation to butanol
CNE_1c11340	PWY-7124	ethylene biosynthesis V (engineered)
CNE_1c11340	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CNE_1c11470	PWY-101	photosynthesis light reactions
CNE_1c11470	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
CNE_1c11520	PWY-2941	L-lysine biosynthesis II
CNE_1c11520	PWY-2942	L-lysine biosynthesis III
CNE_1c11520	PWY-5097	L-lysine biosynthesis VI
CNE_1c12080	PWY-6902	chitin degradation II
CNE_1c12190	PWY-2301	<i>myo</i>-inositol biosynthesis
CNE_1c12190	PWY-4702	phytate degradation I
CNE_1c12190	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
CNE_1c12210	PWY-6936	seleno-amino acid biosynthesis
CNE_1c12210	PWY-7274	D-cycloserine biosynthesis
CNE_1c12280	PWY-4381	fatty acid biosynthesis initiation I
CNE_1c12280	PWY-5743	3-hydroxypropanoate cycle
CNE_1c12280	PWY-5744	glyoxylate assimilation
CNE_1c12280	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CNE_1c12280	PWY-6679	jadomycin biosynthesis
CNE_1c12280	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CNE_1c12300	PWY-2941	L-lysine biosynthesis II
CNE_1c12300	PWY-2942	L-lysine biosynthesis III
CNE_1c12300	PWY-5097	L-lysine biosynthesis VI
CNE_1c12300	PWY-6559	spermidine biosynthesis II
CNE_1c12300	PWY-6562	norspermidine biosynthesis
CNE_1c12300	PWY-7153	grixazone biosynthesis
CNE_1c12350	PWY-5750	itaconate biosynthesis
CNE_1c12350	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CNE_1c12350	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
CNE_1c12930	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c12930	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c12950	PWY-6785	hydrogen production VIII
CNE_1c12990	PWY-5344	L-homocysteine biosynthesis
CNE_1c12990	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
CNE_1c13030	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CNE_1c13800	PWY-5022	4-aminobutanoate degradation V
CNE_1c13800	PWY-6728	methylaspartate cycle
CNE_1c13800	PWY-7126	ethylene biosynthesis IV
CNE_1c13960	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CNE_1c13960	PWY-2201	folate transformations I
CNE_1c13960	PWY-3841	folate transformations II
CNE_1c13960	PWY-5030	L-histidine degradation III
CNE_1c13960	PWY-5497	purine nucleobases degradation II (anaerobic)
CNE_1c13960	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CNE_1c14010	PWY-6891	thiazole biosynthesis II (Bacillus)
CNE_1c14010	PWY-6892	thiazole biosynthesis I (E. coli)
CNE_1c14010	PWY-7560	methylerythritol phosphate pathway II
CNE_1c14040	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CNE_1c14040	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CNE_1c14140	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c14140	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c14290	PWY-5686	UMP biosynthesis
CNE_1c14360	PWY-101	photosynthesis light reactions
CNE_1c14360	PWY-1361	benzoyl-CoA degradation I (aerobic)
CNE_1c14360	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
CNE_1c14370	PWY-1361	benzoyl-CoA degradation I (aerobic)
CNE_1c14380	PWY-1361	benzoyl-CoA degradation I (aerobic)
CNE_1c14390	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CNE_1c14670	PWY-5676	acetyl-CoA fermentation to butanoate II
CNE_1c14670	PWY-5741	ethylmalonyl-CoA pathway
CNE_1c14670	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CNE_1c14730	PWY-6936	seleno-amino acid biosynthesis
CNE_1c14800	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CNE_1c14820	PWY-7560	methylerythritol phosphate pathway II
CNE_1c14830	PWY-7560	methylerythritol phosphate pathway II
CNE_1c14960	PWY-723	alkylnitronates degradation
CNE_1c15050	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CNE_1c15270	PWY-3801	sucrose degradation II (sucrose synthase)
CNE_1c15270	PWY-5054	sorbitol biosynthesis I
CNE_1c15270	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CNE_1c15270	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CNE_1c15270	PWY-5659	GDP-mannose biosynthesis
CNE_1c15270	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CNE_1c15270	PWY-621	sucrose degradation III (sucrose invertase)
CNE_1c15270	PWY-622	starch biosynthesis
CNE_1c15270	PWY-6531	mannitol cycle
CNE_1c15270	PWY-6981	chitin biosynthesis
CNE_1c15270	PWY-7238	sucrose biosynthesis II
CNE_1c15270	PWY-7347	sucrose biosynthesis III
CNE_1c15270	PWY-7385	1,3-propanediol biosynthesis (engineered)
CNE_1c15290	PWY-6938	NADH repair
CNE_1c15370	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CNE_1c15390	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CNE_1c15390	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CNE_1c15390	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CNE_1c15410	PWY-6167	flavin biosynthesis II (archaea)
CNE_1c15420	PWY-6167	flavin biosynthesis II (archaea)
CNE_1c15580	PWY-1361	benzoyl-CoA degradation I (aerobic)
CNE_1c15580	PWY-5109	2-methylbutanoate biosynthesis
CNE_1c15580	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CNE_1c15580	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CNE_1c15580	PWY-5177	glutaryl-CoA degradation
CNE_1c15580	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CNE_1c15580	PWY-6435	4-hydroxybenzoate biosynthesis V
CNE_1c15580	PWY-6583	pyruvate fermentation to butanol I
CNE_1c15580	PWY-6863	pyruvate fermentation to hexanol
CNE_1c15580	PWY-6883	pyruvate fermentation to butanol II
CNE_1c15580	PWY-6944	androstenedione degradation
CNE_1c15580	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CNE_1c15580	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CNE_1c15580	PWY-7007	methyl ketone biosynthesis
CNE_1c15580	PWY-7046	4-coumarate degradation (anaerobic)
CNE_1c15580	PWY-7094	fatty acid salvage
CNE_1c15580	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CNE_1c15580	PWY-735	jasmonic acid biosynthesis
CNE_1c15580	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CNE_1c15900	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CNE_1c15900	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CNE_1c15900	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CNE_1c15900	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CNE_1c15900	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CNE_1c15900	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CNE_1c16220	PWY-5331	taurine biosynthesis
CNE_1c16240	PWY-6672	<i>cis</i>-genanyl-CoA degradation
CNE_1c16240	PWY-7118	chitin degradation to ethanol
CNE_1c16450	PWY-5794	malonate degradation I (biotin-independent)
CNE_1c16450	PWY-6060	malonate degradation II (biotin-dependent)
CNE_1c16460	PWY-5796	malonate decarboxylase activation
CNE_1c16480	PWY-4381	fatty acid biosynthesis initiation I
CNE_1c16480	PWY-5743	3-hydroxypropanoate cycle
CNE_1c16480	PWY-5744	glyoxylate assimilation
CNE_1c16480	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CNE_1c16480	PWY-6060	malonate degradation II (biotin-dependent)
CNE_1c16480	PWY-6679	jadomycin biosynthesis
CNE_1c16480	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CNE_1c16490	PWY-6060	malonate degradation II (biotin-dependent)
CNE_1c16500	PWY-5796	malonate decarboxylase activation
CNE_1c16510	PWY-4381	fatty acid biosynthesis initiation I
CNE_1c16510	PWY-6799	fatty acid biosynthesis (plant mitochondria)
CNE_1c16510	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CNE_1c16560	PWY-6683	sulfate reduction III (assimilatory)
CNE_1c16590	PWY-3781	aerobic respiration I (cytochrome c)
CNE_1c16590	PWY-4521	arsenite oxidation I (respiratory)
CNE_1c16590	PWY-6692	Fe(II) oxidation
CNE_1c16590	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CNE_1c16590	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
CNE_1c16670	PWY-4983	L-citrulline-nitric oxide cycle
CNE_1c16670	PWY-4984	urea cycle
CNE_1c16670	PWY-5	canavanine biosynthesis
CNE_1c16670	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CNE_1c16670	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CNE_1c16790	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CNE_1c17160	PWY-5392	reductive TCA cycle II
CNE_1c17160	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CNE_1c17160	PWY-5690	TCA cycle II (plants and fungi)
CNE_1c17160	PWY-5913	TCA cycle VI (obligate autotrophs)
CNE_1c17160	PWY-6728	methylaspartate cycle
CNE_1c17160	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CNE_1c17160	PWY-7254	TCA cycle VII (acetate-producers)
CNE_1c17160	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CNE_1c17180	PWY-7425	2-chloroacrylate degradation I
CNE_1c17260	PWY-6672	<i>cis</i>-genanyl-CoA degradation
CNE_1c17260	PWY-7118	chitin degradation to ethanol
CNE_1c17300	PWY-5692	allantoin degradation to glyoxylate II
CNE_1c17300	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
CNE_1c17320	PWY-5692	allantoin degradation to glyoxylate II
CNE_1c17320	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
CNE_1c17410	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c17410	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c17500	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c17500	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c17770	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CNE_1c17800	PWY-6550	carbazole degradation
CNE_1c17850	PWY-6690	cinnamate and 3-hydroxycinnamate degradation to 2-oxopent-4-enoate
CNE_1c17870	PWY-5162	2-oxopentenoate degradation
CNE_1c17870	PWY-5436	L-threonine degradation IV
CNE_1c17870	PWY-5480	pyruvate fermentation to ethanol I
CNE_1c17870	PWY-6587	pyruvate fermentation to ethanol III
CNE_1c17870	PWY-7085	triethylamine degradation
CNE_1c17870	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CNE_1c17880	PWY-5162	2-oxopentenoate degradation
CNE_1c17890	PWY-6690	cinnamate and 3-hydroxycinnamate degradation to 2-oxopent-4-enoate
CNE_1c18040	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CNE_1c18130	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CNE_1c18130	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CNE_1c18530	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
CNE_1c18530	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
CNE_1c18640	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CNE_1c18840	PWY-5747	2-methylcitrate cycle II
CNE_1c19030	PWY-6703	preQ<sub>0</sub> biosynthesis
CNE_1c19190	PWY-5743	3-hydroxypropanoate cycle
CNE_1c19190	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CNE_1c19190	PWY-6728	methylaspartate cycle
CNE_1c19190	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CNE_1c19370	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
CNE_1c19380	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
CNE_1c19430	PWY-4381	fatty acid biosynthesis initiation I
CNE_1c19430	PWY-5743	3-hydroxypropanoate cycle
CNE_1c19430	PWY-5744	glyoxylate assimilation
CNE_1c19430	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CNE_1c19430	PWY-6679	jadomycin biosynthesis
CNE_1c19430	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CNE_1c19450	PWY-5074	mevalonate degradation
CNE_1c19520	PWY-6936	seleno-amino acid biosynthesis
CNE_1c19590	PWY-5392	reductive TCA cycle II
CNE_1c19590	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CNE_1c19590	PWY-5690	TCA cycle II (plants and fungi)
CNE_1c19590	PWY-5913	TCA cycle VI (obligate autotrophs)
CNE_1c19590	PWY-6728	methylaspartate cycle
CNE_1c19590	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CNE_1c19590	PWY-7254	TCA cycle VII (acetate-producers)
CNE_1c19590	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CNE_1c19660	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CNE_1c19680	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CNE_1c19680	PWY-6596	adenosine nucleotides degradation I
CNE_1c19680	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CNE_1c19760	PWY-5484	glycolysis II (from fructose 6-phosphate)
CNE_1c19820	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CNE_1c19820	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CNE_1c19820	PWY-5989	stearate biosynthesis II (bacteria and plants)
CNE_1c19820	PWY-5994	palmitate biosynthesis I (animals and fungi)
CNE_1c19820	PWY-6113	superpathway of mycolate biosynthesis
CNE_1c19820	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CNE_1c19820	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CNE_1c19820	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CNE_1c19820	PWYG-321	mycolate biosynthesis
CNE_1c19870	PWY-7560	methylerythritol phosphate pathway II
CNE_1c20290	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CNE_1c20400	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CNE_1c20630	PWY-1042	glycolysis IV (plant cytosol)
CNE_1c20630	PWY-1622	formaldehyde assimilation I (serine pathway)
CNE_1c20630	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CNE_1c20630	PWY-5484	glycolysis II (from fructose 6-phosphate)
CNE_1c20630	PWY-5723	Rubisco shunt
CNE_1c20630	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CNE_1c20630	PWY-6886	1-butanol autotrophic biosynthesis
CNE_1c20630	PWY-6901	superpathway of glucose and xylose degradation
CNE_1c20630	PWY-7003	glycerol degradation to butanol
CNE_1c20630	PWY-7124	ethylene biosynthesis V (engineered)
CNE_1c20630	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CNE_1c20640	PWY-1042	glycolysis IV (plant cytosol)
CNE_1c20640	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CNE_1c20640	PWY-5484	glycolysis II (from fructose 6-phosphate)
CNE_1c20640	PWY-5723	Rubisco shunt
CNE_1c20640	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CNE_1c20640	PWY-6886	1-butanol autotrophic biosynthesis
CNE_1c20640	PWY-6901	superpathway of glucose and xylose degradation
CNE_1c20640	PWY-7003	glycerol degradation to butanol
CNE_1c20640	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CNE_1c20640	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CNE_1c20870	PWY-5676	acetyl-CoA fermentation to butanoate II
CNE_1c20870	PWY-5741	ethylmalonyl-CoA pathway
CNE_1c20870	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CNE_1c20990	PWY-5491	diethylphosphate degradation
CNE_1c21000	PWY-5491	diethylphosphate degradation
CNE_1c21150	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CNE_1c21260	PWY-6728	methylaspartate cycle
CNE_1c21260	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CNE_1c21260	PWY-7118	chitin degradation to ethanol
CNE_1c21260	PWY-7294	xylose degradation IV
CNE_1c21260	PWY-7295	L-arabinose degradation IV
CNE_1c21270	PWY-7425	2-chloroacrylate degradation I
CNE_1c21320	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CNE_1c21670	PWY-6823	molybdenum cofactor biosynthesis
CNE_1c21690	PWY-6823	molybdenum cofactor biosynthesis
CNE_1c22280	PWY-3781	aerobic respiration I (cytochrome c)
CNE_1c22280	PWY-4521	arsenite oxidation I (respiratory)
CNE_1c22280	PWY-6692	Fe(II) oxidation
CNE_1c22280	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CNE_1c22290	PWY-3781	aerobic respiration I (cytochrome c)
CNE_1c22290	PWY-4521	arsenite oxidation I (respiratory)
CNE_1c22290	PWY-6692	Fe(II) oxidation
CNE_1c22290	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CNE_1c22330	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CNE_1c22330	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CNE_1c22340	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CNE_1c22350	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CNE_1c22370	PWY-5686	UMP biosynthesis
CNE_1c22450	PWY-381	nitrate reduction II (assimilatory)
CNE_1c22450	PWY-5675	nitrate reduction V (assimilatory)
CNE_1c22450	PWY-6549	L-glutamine biosynthesis III
CNE_1c22450	PWY-6963	ammonia assimilation cycle I
CNE_1c22450	PWY-6964	ammonia assimilation cycle II
CNE_1c22530	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CNE_1c22550	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CNE_1c22550	PWY-5723	Rubisco shunt
CNE_1c22560	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CNE_1c22560	PWY-5723	Rubisco shunt
CNE_1c22640	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CNE_1c22740	PWY-7560	methylerythritol phosphate pathway II
CNE_1c22780	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CNE_1c22780	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CNE_1c22780	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CNE_1c22780	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CNE_1c22780	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CNE_1c22780	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CNE_1c22780	PWY-7205	CMP phosphorylation
CNE_1c22780	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CNE_1c22780	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CNE_1c22780	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CNE_1c22780	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CNE_1c22780	PWY-7224	purine deoxyribonucleosides salvage
CNE_1c22780	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CNE_1c22780	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CNE_1c22860	PWY-5381	pyridine nucleotide cycling (plants)
CNE_1c22860	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CNE_1c22860	PWY-6596	adenosine nucleotides degradation I
CNE_1c22860	PWY-6606	guanosine nucleotides degradation II
CNE_1c22860	PWY-6607	guanosine nucleotides degradation I
CNE_1c22860	PWY-6608	guanosine nucleotides degradation III
CNE_1c22860	PWY-7185	UTP and CTP dephosphorylation I
CNE_1c23010	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CNE_1c23010	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CNE_1c23010	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CNE_1c23010	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CNE_1c23010	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CNE_1c23010	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CNE_1c23010	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CNE_1c23010	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CNE_1c23060	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CNE_1c23170	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CNE_1c23240	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CNE_1c23240	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CNE_1c23240	PWY-5989	stearate biosynthesis II (bacteria and plants)
CNE_1c23240	PWY-6113	superpathway of mycolate biosynthesis
CNE_1c23240	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CNE_1c23240	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CNE_1c23240	PWY-7096	triclosan resistance
CNE_1c23240	PWYG-321	mycolate biosynthesis
CNE_1c23540	PWY-6749	CMP-legionaminate biosynthesis I
CNE_1c23550	PWY-6614	tetrahydrofolate biosynthesis
CNE_1c23610	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CNE_1c23610	PWY-5686	UMP biosynthesis
CNE_1c23610	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CNE_1c23630	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CNE_1c23630	PWY-5686	UMP biosynthesis
CNE_1c23630	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CNE_1c23710	PWY-3941	&beta;-alanine biosynthesis II
CNE_1c23710	PWY-5104	L-isoleucine biosynthesis IV
CNE_1c23710	PWY-5747	2-methylcitrate cycle II
CNE_1c23730	PWY-5386	methylglyoxal degradation I
CNE_1c23900	PWY-2201	folate transformations I
CNE_1c23900	PWY-5497	purine nucleobases degradation II (anaerobic)
CNE_1c23920	PWY-4261	glycerol degradation I
CNE_1c23930	PWY-4261	glycerol degradation I
CNE_1c23930	PWY-6118	glycerol-3-phosphate shuttle
CNE_1c23930	PWY-6952	glycerophosphodiester degradation
CNE_1c24100	PWY-6672	<i>cis</i>-genanyl-CoA degradation
CNE_1c24100	PWY-7118	chitin degradation to ethanol
CNE_1c24130	PWY-5392	reductive TCA cycle II
CNE_1c24130	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CNE_1c24130	PWY-5690	TCA cycle II (plants and fungi)
CNE_1c24130	PWY-5913	TCA cycle VI (obligate autotrophs)
CNE_1c24130	PWY-6728	methylaspartate cycle
CNE_1c24130	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CNE_1c24130	PWY-7254	TCA cycle VII (acetate-producers)
CNE_1c24130	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CNE_1c24140	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c24140	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c24300	PWY-5269	cardiolipin biosynthesis II
CNE_1c24300	PWY-5668	cardiolipin biosynthesis I
CNE_1c24340	PWY-6902	chitin degradation II
CNE_1c24350	PWY-6012	acyl carrier protein metabolism I
CNE_1c24350	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CNE_1c24510	PWY-5367	petroselinate biosynthesis
CNE_1c24510	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CNE_1c24510	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CNE_1c24510	PWY-5989	stearate biosynthesis II (bacteria and plants)
CNE_1c24510	PWY-5994	palmitate biosynthesis I (animals and fungi)
CNE_1c24510	PWY-6113	superpathway of mycolate biosynthesis
CNE_1c24510	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CNE_1c24510	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CNE_1c24510	PWY-6951	CNE_1c24510
CNE_1c24510	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
CNE_1c24510	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CNE_1c24510	PWYG-321	mycolate biosynthesis
CNE_1c24520	PWY-4381	fatty acid biosynthesis initiation I
CNE_1c24520	PWY-6799	fatty acid biosynthesis (plant mitochondria)
CNE_1c24520	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CNE_1c24530	PWY-4381	fatty acid biosynthesis initiation I
CNE_1c24640	PWY-6823	molybdenum cofactor biosynthesis
CNE_1c24650	PWY-5964	guanylyl molybdenum cofactor biosynthesis
CNE_1c24660	PWY-6823	molybdenum cofactor biosynthesis
CNE_1c24720	PWY-5381	pyridine nucleotide cycling (plants)
CNE_1c24750	PWY-101	photosynthesis light reactions
CNE_1c24750	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
CNE_1c24890	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CNE_1c24890	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CNE_1c24890	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CNE_1c24890	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CNE_1c24920	PWY-2161	folate polyglutamylation
CNE_1c24930	PWY-4381	fatty acid biosynthesis initiation I
CNE_1c24930	PWY-5743	3-hydroxypropanoate cycle
CNE_1c24930	PWY-5744	glyoxylate assimilation
CNE_1c24930	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CNE_1c24930	PWY-6679	jadomycin biosynthesis
CNE_1c24930	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CNE_1c25000	PWY-2941	L-lysine biosynthesis II
CNE_1c25000	PWY-2942	L-lysine biosynthesis III
CNE_1c25000	PWY-5097	L-lysine biosynthesis VI
CNE_1c25000	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CNE_1c25000	PWY-6559	spermidine biosynthesis II
CNE_1c25000	PWY-6562	norspermidine biosynthesis
CNE_1c25000	PWY-7153	grixazone biosynthesis
CNE_1c25000	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CNE_1c25020	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CNE_1c25120	PWY-3781	aerobic respiration I (cytochrome c)
CNE_1c25120	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CNE_1c25120	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CNE_1c25120	PWY-5690	TCA cycle II (plants and fungi)
CNE_1c25120	PWY-6728	methylaspartate cycle
CNE_1c25120	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CNE_1c25120	PWY-7254	TCA cycle VII (acetate-producers)
CNE_1c25120	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CNE_1c25130	PWY-3781	aerobic respiration I (cytochrome c)
CNE_1c25130	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CNE_1c25130	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CNE_1c25130	PWY-5690	TCA cycle II (plants and fungi)
CNE_1c25130	PWY-6728	methylaspartate cycle
CNE_1c25130	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CNE_1c25130	PWY-7254	TCA cycle VII (acetate-producers)
CNE_1c25130	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CNE_1c25170	PWY-1622	formaldehyde assimilation I (serine pathway)
CNE_1c25170	PWY-5392	reductive TCA cycle II
CNE_1c25170	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CNE_1c25170	PWY-5690	TCA cycle II (plants and fungi)
CNE_1c25170	PWY-5913	TCA cycle VI (obligate autotrophs)
CNE_1c25170	PWY-6728	methylaspartate cycle
CNE_1c25170	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CNE_1c25170	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CNE_1c25170	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CNE_1c26010	PWY-3841	folate transformations II
CNE_1c26010	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CNE_1c26010	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CNE_1c26010	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CNE_1c26010	PWY-7199	pyrimidine deoxyribonucleosides salvage
CNE_1c26010	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CNE_1c26020	PWY-3841	folate transformations II
CNE_1c26020	PWY-6614	tetrahydrofolate biosynthesis
CNE_1c26280	PWY-5663	tetrahydrobiopterin biosynthesis I
CNE_1c26280	PWY-5664	tetrahydrobiopterin biosynthesis II
CNE_1c26280	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CNE_1c26280	PWY-6703	preQ<sub>0</sub> biosynthesis
CNE_1c26280	PWY-6983	tetrahydrobiopterin biosynthesis III
CNE_1c26280	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CNE_1c26290	PWY-6891	thiazole biosynthesis II (Bacillus)
CNE_1c26290	PWY-6892	thiazole biosynthesis I (E. coli)
CNE_1c26290	PWY-7560	methylerythritol phosphate pathway II
CNE_1c26340	PWY-5350	thiosulfate disproportionation III (rhodanese)
CNE_1c26410	PWY-702	L-methionine biosynthesis II
CNE_1c26490	PWY-3801	sucrose degradation II (sucrose synthase)
CNE_1c26490	PWY-6527	stachyose degradation
CNE_1c26490	PWY-6981	chitin biosynthesis
CNE_1c26490	PWY-7238	sucrose biosynthesis II
CNE_1c26490	PWY-7343	UDP-glucose biosynthesis
CNE_1c26700	PWY-4041	&gamma;-glutamyl cycle
CNE_1c26700	PWY-5826	hypoglycin biosynthesis
CNE_1c26720	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CNE_1c26720	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CNE_1c26740	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CNE_1c26860	PWY-5692	allantoin degradation to glyoxylate II
CNE_1c26860	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
CNE_1c26920	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CNE_1c26920	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CNE_1c26950	PWY-5392	reductive TCA cycle II
CNE_1c26950	PWY-5537	pyruvate fermentation to acetate V
CNE_1c26950	PWY-5538	pyruvate fermentation to acetate VI
CNE_1c26950	PWY-5690	TCA cycle II (plants and fungi)
CNE_1c26950	PWY-5913	TCA cycle VI (obligate autotrophs)
CNE_1c26950	PWY-6728	methylaspartate cycle
CNE_1c26950	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CNE_1c26950	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CNE_1c27040	PWY-4381	fatty acid biosynthesis initiation I
CNE_1c27040	PWY-5743	3-hydroxypropanoate cycle
CNE_1c27040	PWY-5744	glyoxylate assimilation
CNE_1c27040	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CNE_1c27040	PWY-6679	jadomycin biosynthesis
CNE_1c27040	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CNE_1c27140	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
CNE_1c27140	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
CNE_1c27150	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
CNE_1c27150	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
CNE_1c27300	PWY-6703	preQ<sub>0</sub> biosynthesis
CNE_1c27380	PWY-1622	formaldehyde assimilation I (serine pathway)
CNE_1c27380	PWY-181	photorespiration
CNE_1c27380	PWY-2161	folate polyglutamylation
CNE_1c27380	PWY-2201	folate transformations I
CNE_1c27380	PWY-3661	glycine betaine degradation I
CNE_1c27380	PWY-3661-1	glycine betaine degradation II (mammalian)
CNE_1c27380	PWY-3841	folate transformations II
CNE_1c27380	PWY-5497	purine nucleobases degradation II (anaerobic)
CNE_1c27480	PWY-6167	flavin biosynthesis II (archaea)
CNE_1c27480	PWY-6168	flavin biosynthesis III (fungi)
CNE_1c27480	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CNE_1c27530	PWY-6167	flavin biosynthesis II (archaea)
CNE_1c27530	PWY-6168	flavin biosynthesis III (fungi)
CNE_1c27530	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CNE_1c27540	PWY-6167	flavin biosynthesis II (archaea)
CNE_1c27540	PWY-6168	flavin biosynthesis III (fungi)
CNE_1c28230	PWY-6749	CMP-legionaminate biosynthesis I
CNE_1c28290	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CNE_1c28290	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CNE_1c28290	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CNE_1c28500	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
CNE_1c28550	PWY-5659	GDP-mannose biosynthesis
CNE_1c28550	PWY-6073	alginate biosynthesis I (algal)
CNE_1c28550	PWY-6082	alginate biosynthesis II (bacterial)
CNE_1c28550	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CNE_1c28570	PWY-3221	dTDP-L-rhamnose biosynthesis II
CNE_1c28570	PWY-6808	dTDP-D-forosamine biosynthesis
CNE_1c28570	PWY-6942	dTDP-D-desosamine biosynthesis
CNE_1c28570	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CNE_1c28570	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CNE_1c28570	PWY-6974	dTDP-L-olivose biosynthesis
CNE_1c28570	PWY-6976	dTDP-L-mycarose biosynthesis
CNE_1c28570	PWY-7104	dTDP-L-megosamine biosynthesis
CNE_1c28570	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CNE_1c28570	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CNE_1c28570	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CNE_1c28570	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CNE_1c28570	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CNE_1c28570	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CNE_1c28570	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CNE_1c28570	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CNE_1c28590	PWY-3221	dTDP-L-rhamnose biosynthesis II
CNE_1c28590	PWY-6808	dTDP-D-forosamine biosynthesis
CNE_1c28590	PWY-6942	dTDP-D-desosamine biosynthesis
CNE_1c28590	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CNE_1c28590	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CNE_1c28590	PWY-6974	dTDP-L-olivose biosynthesis
CNE_1c28590	PWY-6976	dTDP-L-mycarose biosynthesis
CNE_1c28590	PWY-7104	dTDP-L-megosamine biosynthesis
CNE_1c28590	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CNE_1c28590	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CNE_1c28590	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CNE_1c28590	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CNE_1c28590	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CNE_1c28590	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CNE_1c28590	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CNE_1c28590	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CNE_1c28620	PWY-5686	UMP biosynthesis
CNE_1c28630	PWY-5686	UMP biosynthesis
CNE_1c28690	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CNE_1c28690	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CNE_1c28700	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CNE_1c28700	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CNE_1c28710	PWY-1622	formaldehyde assimilation I (serine pathway)
CNE_1c28710	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CNE_1c28710	PWY-5913	TCA cycle VI (obligate autotrophs)
CNE_1c28710	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CNE_1c28710	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
CNE_1c28710	PWY-6549	L-glutamine biosynthesis III
CNE_1c28710	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CNE_1c28710	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CNE_1c28710	PWY-7124	ethylene biosynthesis V (engineered)
CNE_1c28750	PWY-4983	L-citrulline-nitric oxide cycle
CNE_1c28750	PWY-4984	urea cycle
CNE_1c28750	PWY-5	canavanine biosynthesis
CNE_1c28750	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CNE_1c28750	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CNE_1c28800	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CNE_1c28960	PWY-4381	fatty acid biosynthesis initiation I
CNE_1c28960	PWY-5743	3-hydroxypropanoate cycle
CNE_1c28960	PWY-5744	glyoxylate assimilation
CNE_1c28960	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CNE_1c28960	PWY-6679	jadomycin biosynthesis
CNE_1c28960	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CNE_1c29120	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CNE_1c29120	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CNE_1c29120	PWY-6269	adenosylcobalamin salvage from cobinamide II
CNE_1c29140	PWY-5443	aminopropanol phosphate biosynthesis I
CNE_1c29170	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CNE_1c29170	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CNE_1c29170	PWY-6269	adenosylcobalamin salvage from cobinamide II
CNE_1c29180	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CNE_1c29180	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CNE_1c29180	PWY-6269	adenosylcobalamin salvage from cobinamide II
CNE_1c29190	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CNE_1c29190	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CNE_1c29190	PWY-6268	adenosylcobalamin salvage from cobalamin
CNE_1c29190	PWY-6269	adenosylcobalamin salvage from cobinamide II
CNE_1c29370	PWY-5101	L-isoleucine biosynthesis II
CNE_1c29370	PWY-5103	L-isoleucine biosynthesis III
CNE_1c29370	PWY-5104	L-isoleucine biosynthesis IV
CNE_1c29370	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CNE_1c29400	PWY-5988	wound-induced proteolysis I
CNE_1c29400	PWY-6018	seed germination protein turnover
CNE_1c29430	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CNE_1c29440	PWY-5194	siroheme biosynthesis
CNE_1c29440	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CNE_1c29450	PWY-5278	sulfite oxidation III
CNE_1c29450	PWY-5340	sulfate activation for sulfonation
CNE_1c29450	PWY-6683	sulfate reduction III (assimilatory)
CNE_1c29450	PWY-6932	selenate reduction
CNE_1c29460	PWY-5278	sulfite oxidation III
CNE_1c29460	PWY-5340	sulfate activation for sulfonation
CNE_1c29460	PWY-6683	sulfate reduction III (assimilatory)
CNE_1c29460	PWY-6932	selenate reduction
CNE_1c29490	PWY-6683	sulfate reduction III (assimilatory)
CNE_1c29640	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
CNE_1c29690	PWY-5028	L-histidine degradation II
CNE_1c29690	PWY-5030	L-histidine degradation III
CNE_1c29710	PWY-5028	L-histidine degradation II
CNE_1c29710	PWY-5030	L-histidine degradation III
CNE_1c29720	PWY-5028	L-histidine degradation II
CNE_1c29720	PWY-5030	L-histidine degradation III
CNE_1c29870	PWY-7560	methylerythritol phosphate pathway II
CNE_1c29920	PWY-5316	nicotine biosynthesis
CNE_1c29920	PWY-7342	superpathway of nicotine biosynthesis
CNE_1c29930	PWY-5316	nicotine biosynthesis
CNE_1c29930	PWY-5381	pyridine nucleotide cycling (plants)
CNE_1c29930	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CNE_1c29930	PWY-7342	superpathway of nicotine biosynthesis
CNE_1c29940	PWY-5316	nicotine biosynthesis
CNE_1c29940	PWY-7342	superpathway of nicotine biosynthesis
CNE_1c29980	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CNE_1c29980	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CNE_1c30010	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CNE_1c30010	PWY-6167	flavin biosynthesis II (archaea)
CNE_1c30010	PWY-6168	flavin biosynthesis III (fungi)
CNE_1c30050	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CNE_1c30050	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CNE_1c30050	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CNE_1c30050	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CNE_1c30120	PWY-5913	TCA cycle VI (obligate autotrophs)
CNE_1c30120	PWY-6549	L-glutamine biosynthesis III
CNE_1c30120	PWY-6728	methylaspartate cycle
CNE_1c30120	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CNE_1c30120	PWY-7124	ethylene biosynthesis V (engineered)
CNE_1c30120	PWY-7254	TCA cycle VII (acetate-producers)
CNE_1c30120	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CNE_1c30170	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c30170	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c30190	PWY-4981	L-proline biosynthesis II (from arginine)
CNE_1c30190	PWY-4984	urea cycle
CNE_1c30190	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CNE_1c30260	PWY-2781	<i>cis</i>-zeatin biosynthesis
CNE_1c30290	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c30290	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c30300	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CNE_1c30310	PWY-3982	uracil degradation I (reductive)
CNE_1c30310	PWY-6430	thymine degradation
CNE_1c30330	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CNE_1c30330	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CNE_1c30330	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CNE_1c30380	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CNE_1c30380	PWY-6148	tetrahydromethanopterin biosynthesis
CNE_1c30380	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CNE_1c30380	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CNE_1c30400	PWY-6654	phosphopantothenate biosynthesis III
CNE_1c30430	PWY-5958	acridone alkaloid biosynthesis
CNE_1c30430	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CNE_1c30430	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CNE_1c30460	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CNE_1c30460	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CNE_1c30460	PWY-6268	adenosylcobalamin salvage from cobalamin
CNE_1c30460	PWY-6269	adenosylcobalamin salvage from cobinamide II
CNE_1c30470	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c30470	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c30500	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c30500	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c30520	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c30520	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c30610	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CNE_1c30620	PWY-3341	L-proline biosynthesis III
CNE_1c30620	PWY-4981	L-proline biosynthesis II (from arginine)
CNE_1c30620	PWY-6344	L-ornithine degradation II (Stickland reaction)
CNE_1c30660	PWY-5506	methanol oxidation to formaldehyde IV
CNE_1c30690	PWY-6700	queuosine biosynthesis
CNE_1c30700	PWY-6700	queuosine biosynthesis
CNE_1c30810	PWY-6123	inosine-5'-phosphate biosynthesis I
CNE_1c30810	PWY-6124	inosine-5'-phosphate biosynthesis II
CNE_1c30810	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CNE_1c30810	PWY-7234	inosine-5'-phosphate biosynthesis III
CNE_1c30860	PWY-5155	&beta;-alanine biosynthesis III
CNE_1c30970	PWY-2941	L-lysine biosynthesis II
CNE_1c30970	PWY-2942	L-lysine biosynthesis III
CNE_1c30970	PWY-5097	L-lysine biosynthesis VI
CNE_1c31020	PWY-1042	glycolysis IV (plant cytosol)
CNE_1c31020	PWY-5484	glycolysis II (from fructose 6-phosphate)
CNE_1c31020	PWY-6901	superpathway of glucose and xylose degradation
CNE_1c31020	PWY-7003	glycerol degradation to butanol
CNE_1c31030	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CNE_1c31030	PWY-5723	Rubisco shunt
CNE_1c31030	PWY-6891	thiazole biosynthesis II (Bacillus)
CNE_1c31030	PWY-6892	thiazole biosynthesis I (E. coli)
CNE_1c31030	PWY-6901	superpathway of glucose and xylose degradation
CNE_1c31030	PWY-7560	methylerythritol phosphate pathway II
CNE_1c31090	PWY-1281	sulfoacetaldehyde degradation I
CNE_1c31090	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CNE_1c31090	PWY-5482	pyruvate fermentation to acetate II
CNE_1c31090	PWY-5485	pyruvate fermentation to acetate IV
CNE_1c31090	PWY-5497	purine nucleobases degradation II (anaerobic)
CNE_1c31090	PWY-6637	sulfolactate degradation II
CNE_1c31090	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CNE_1c31100	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CNE_1c31100	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CNE_1c31100	PWY-6896	thiamin salvage I
CNE_1c31100	PWY-6897	thiamin salvage II
CNE_1c31110	PWY-5269	cardiolipin biosynthesis II
CNE_1c31110	PWY-5668	cardiolipin biosynthesis I
CNE_1c31130	PWY-5686	UMP biosynthesis
CNE_1c31170	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CNE_1c31210	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
CNE_1c31210	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
CNE_1c31210	PWY-6148	tetrahydromethanopterin biosynthesis
CNE_1c31260	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CNE_1c31260	PWY-6416	quinate degradation II
CNE_1c31260	PWY-6707	gallate biosynthesis
CNE_1c31500	PWY-5694	allantoin degradation to glyoxylate I
CNE_1c31500	PWY-5705	allantoin degradation to glyoxylate III
CNE_1c31600	PWY-2941	L-lysine biosynthesis II
CNE_1c31600	PWY-2942	L-lysine biosynthesis III
CNE_1c31600	PWY-5097	L-lysine biosynthesis VI
CNE_1c31670	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CNE_1c31670	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CNE_1c31670	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CNE_1c31670	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CNE_1c31670	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CNE_1c31670	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CNE_1c31670	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CNE_1c31670	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CNE_1c31680	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CNE_1c31680	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CNE_1c31680	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CNE_1c31680	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CNE_1c31680	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CNE_1c31680	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CNE_1c31680	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CNE_1c31680	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CNE_1c32010	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CNE_1c32090	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c32090	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c32100	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c32100	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c32110	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CNE_1c32110	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CNE_1c32110	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CNE_1c32110	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CNE_1c32130	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c32130	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c32140	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CNE_1c32140	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CNE_1c32140	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CNE_1c32150	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c32150	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c32500	PWY-1341	phenylacetate degradation II (anaerobic)
CNE_1c32500	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CNE_1c32540	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CNE_1c32540	PWY-5723	Rubisco shunt
CNE_1c32550	PWY-181	photorespiration
CNE_1c32560	PWY-5958	acridone alkaloid biosynthesis
CNE_1c32560	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CNE_1c32560	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CNE_1c32570	PWY-5958	acridone alkaloid biosynthesis
CNE_1c32570	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CNE_1c32570	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CNE_1c32740	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CNE_1c32740	PWY-6153	autoinducer AI-2 biosynthesis I
CNE_1c32740	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
CNE_1c32760	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CNE_1c32860	PWY-2941	L-lysine biosynthesis II
CNE_1c32860	PWY-2942	L-lysine biosynthesis III
CNE_1c32860	PWY-5097	L-lysine biosynthesis VI
CNE_1c33050	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CNE_1c33380	PWY-3781	aerobic respiration I (cytochrome c)
CNE_1c33380	PWY-6692	Fe(II) oxidation
CNE_1c33380	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
CNE_1c33380	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CNE_1c33400	PWY-5663	tetrahydrobiopterin biosynthesis I
CNE_1c33400	PWY-5664	tetrahydrobiopterin biosynthesis II
CNE_1c33400	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CNE_1c33400	PWY-6703	preQ<sub>0</sub> biosynthesis
CNE_1c33400	PWY-6983	tetrahydrobiopterin biosynthesis III
CNE_1c33400	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CNE_1c33590	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c33590	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c33750	PWY-6164	3-dehydroquinate biosynthesis I
CNE_1c33760	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CNE_1c33840	PWY-2941	L-lysine biosynthesis II
CNE_1c33840	PWY-2942	L-lysine biosynthesis III
CNE_1c33840	PWY-5097	L-lysine biosynthesis VI
CNE_1c33940	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CNE_1c33940	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CNE_1c34310	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
CNE_1c34330	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
CNE_1c34340	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
CNE_1c34980	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CNE_1c35110	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CNE_1c35110	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CNE_1c35250	PWY-5274	sulfide oxidation II (sulfide dehydrogenase)
CNE_1c35280	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
CNE_1c35350	PWY-4202	arsenate detoxification I (glutaredoxin)
CNE_1c35350	PWY-4621	arsenate detoxification II (glutaredoxin)
CNE_1c35510	PWY-1042	glycolysis IV (plant cytosol)
CNE_1c35510	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CNE_1c35510	PWY-5484	glycolysis II (from fructose 6-phosphate)
CNE_1c35510	PWY-5723	Rubisco shunt
CNE_1c35510	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CNE_1c35510	PWY-6886	1-butanol autotrophic biosynthesis
CNE_1c35510	PWY-6901	superpathway of glucose and xylose degradation
CNE_1c35510	PWY-7003	glycerol degradation to butanol
CNE_1c35510	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CNE_1c35510	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CNE_1c35780	PWY-6840	homoglutathione biosynthesis
CNE_1c35780	PWY-7255	ergothioneine biosynthesis I (bacteria)
CNE_1c35820	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
CNE_1c35820	PWY-6853	ethylene biosynthesis II (microbes)
CNE_1c35820	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CNE_1c35840	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CNE_1c35840	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CNE_1c35880	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CNE_1c35900	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CNE_1c36140	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CNE_1c36140	PWY-7494	choline degradation IV
CNE_1c36150	PWY-5642	2,4-dinitrotoluene degradation
CNE_1c36150	PWY-6373	acrylate degradation
CNE_1c36300	PWY-6134	L-tyrosine biosynthesis IV
CNE_1c36300	PWY-7158	L-phenylalanine degradation V
CNE_1c36310	PWY-7158	L-phenylalanine degradation V
CNE_1c36340	PWY-6424	CNE_1c36340
CNE_1c36630	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
