pRALTA_0001	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
pRALTA_0002	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0006	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
pRALTA_0009	SSF53098	Ribonuclease H-like
pRALTA_0010	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0016	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0021	SSF50249	Nucleic acid-binding proteins
pRALTA_0023	SSF52151	FabD/lysophospholipase-like
pRALTA_0030	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0039	SSF101327	YgfB-like
pRALTA_0039	SSF103642	Sec-C motif
pRALTA_0040	SSF53474	alpha/beta-Hydrolases
pRALTA_0041	SSF46689	Homeodomain-like
pRALTA_0043	SSF143011	RelE-like
pRALTA_0044	SSF143120	YefM-like
pRALTA_0049	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0052	SSF51735	NAD(P)-binding Rossmann-fold domains
pRALTA_0062	SSF46689	Homeodomain-like
pRALTA_0063	SSF52151	FabD/lysophospholipase-like
pRALTA_0066	SSF47473	EF-hand
pRALTA_0068	SSF56935	Porins
pRALTA_0073	SSF88723	PIN domain-like
pRALTA_0075	SSF50249	Nucleic acid-binding proteins
pRALTA_0076	SSF52980	Restriction endonuclease-like
pRALTA_0076	SSF57783	Zinc beta-ribbon
pRALTA_0080	SSF51735	NAD(P)-binding Rossmann-fold domains
pRALTA_0081	SSF53901	Thiolase-like
pRALTA_0082	SSF46785	"Winged helix" DNA-binding domain
pRALTA_0082	SSF51206	cAMP-binding domain-like
pRALTA_0083	SSF46689	Homeodomain-like
pRALTA_0083	SSF48498	Tetracyclin repressor-like, C-terminal domain
pRALTA_0084	SSF53474	alpha/beta-Hydrolases
pRALTA_0086	SSF56672	DNA/RNA polymerases
pRALTA_0093	SSF50249	Nucleic acid-binding proteins
pRALTA_0093	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
pRALTA_0096	SSF143081	BB1717-like
pRALTA_0099	SSF89550	PHP domain-like
pRALTA_0100	SSF56672	DNA/RNA polymerases
pRALTA_0101	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0111	SSF46785	"Winged helix" DNA-binding domain
pRALTA_0118	SSF69572	Activating enzymes of the ubiquitin-like proteins
pRALTA_0123	SSF47413	lambda repressor-like DNA-binding domains
pRALTA_0133	SSF81273	H-NS histone-like proteins
pRALTA_0136	SSF48295	TrpR-like
pRALTA_0140	SSF47823	lambda integrase-like, N-terminal domain
pRALTA_0140	SSF56349	DNA breaking-rejoining enzymes
pRALTA_0147	SSF56349	DNA breaking-rejoining enzymes
pRALTA_0149	SSF47729	IHF-like DNA-binding proteins
pRALTA_0154	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0156	SSF56300	Metallo-dependent phosphatases
pRALTA_0157	SSF56672	DNA/RNA polymerases
pRALTA_0162	SSF89447	AbrB/MazE/MraZ-like
pRALTA_0169	SSF46785	"Winged helix" DNA-binding domain
pRALTA_0172	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
pRALTA_0175	SSF54060	His-Me finger endonucleases
pRALTA_0176	SSF54060	His-Me finger endonucleases
pRALTA_0178	SSF47729	IHF-like DNA-binding proteins
pRALTA_0179	SSF46689	Homeodomain-like
pRALTA_0179	SSF56349	DNA breaking-rejoining enzymes
pRALTA_0183	SSF53067	Actin-like ATPase domain
pRALTA_0187	SSF57783	Zinc beta-ribbon
pRALTA_0188	SSF50249	Nucleic acid-binding proteins
pRALTA_0193	SSF160930	FlhC-like
pRALTA_0196	SSF55797	PR-1-like
pRALTA_0197	SSF55797	PR-1-like
pRALTA_0202	SSF54523	Pili subunits
pRALTA_0203	SSF54523	Pili subunits
pRALTA_0205	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0212	SSF53955	Lysozyme-like
pRALTA_0214	SSF50199	Staphylococcal nuclease
pRALTA_0214	SSF53955	Lysozyme-like
pRALTA_0217	SSF54427	NTF2-like
pRALTA_0218	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0221	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0225	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0230	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0235	SSF53098	Ribonuclease H-like
pRALTA_0236	SSF53474	alpha/beta-Hydrolases
pRALTA_0238	SSF56954	Outer membrane efflux proteins (OEP)
pRALTA_0240	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0240	SSF90123	ABC transporter transmembrane region
pRALTA_0246	SSF46785	"Winged helix" DNA-binding domain
pRALTA_0246	SSF53850	Periplasmic binding protein-like II
pRALTA_0248	SSF53098	Ribonuclease H-like
pRALTA_0250	SSF49899	Concanavalin A-like lectins/glucanases
pRALTA_0253	SSF53098	Ribonuclease H-like
pRALTA_0256	SSF53098	Ribonuclease H-like
pRALTA_0257	SSF48295	TrpR-like
pRALTA_0259	SSF53098	Ribonuclease H-like
pRALTA_0265	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0271	SSF53098	Ribonuclease H-like
pRALTA_0273	SSF160240	Cation efflux protein cytoplasmic domain-like
pRALTA_0273	SSF161111	Cation efflux protein transmembrane domain-like
pRALTA_0276	SSF53098	Ribonuclease H-like
pRALTA_0280	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0281	SSF53098	Ribonuclease H-like
pRALTA_0284	SSF53098	Ribonuclease H-like
pRALTA_0287	SSF53822	Periplasmic binding protein-like I
pRALTA_0288	SSF158472	HAMP domain-like
pRALTA_0288	SSF55785	PYP-like sensor domain (PAS domain)
pRALTA_0288	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
pRALTA_0290	SSF46894	C-terminal effector domain of the bipartite response regulators
pRALTA_0290	SSF52172	CheY-like
pRALTA_0291	SSF74650	Galactose mutarotase-like
pRALTA_0296	SSF53098	Ribonuclease H-like
pRALTA_0297	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0301	SSF56349	DNA breaking-rejoining enzymes
pRALTA_0306	SSF109709	KorB DNA-binding domain-like
pRALTA_0306	SSF110849	ParB/Sulfiredoxin
pRALTA_0307	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0310	SSF46785	"Winged helix" DNA-binding domain
pRALTA_0311	SSF46785	"Winged helix" DNA-binding domain
pRALTA_0321	SSF51679	Bacterial luciferase-like
pRALTA_0322	SSF50475	FMN-binding split barrel
pRALTA_0326	SSF52121	Lumazine synthase
pRALTA_0327	SSF55729	Acyl-CoA N-acyltransferases (Nat)
pRALTA_0328	SSF103473	MFS general substrate transporter
pRALTA_0330	SSF103473	MFS general substrate transporter
pRALTA_0332	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
pRALTA_0333	SSF53098	Ribonuclease H-like
pRALTA_0334	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0338	SSF110296	Oligoxyloglucan reducing end-specific cellobiohydrolase
pRALTA_0338	SSF50939	Sialidases
pRALTA_0339	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0340	SSF53098	Ribonuclease H-like
pRALTA_0341	SSF110296	Oligoxyloglucan reducing end-specific cellobiohydrolase
pRALTA_0343	SSF53098	Ribonuclease H-like
pRALTA_0344	SSF48295	TrpR-like
pRALTA_0346	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0347	SSF53098	Ribonuclease H-like
pRALTA_0348	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
pRALTA_0352	SSF53098	Ribonuclease H-like
pRALTA_0354	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0355	SSF53067	Actin-like ATPase domain
pRALTA_0356	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
pRALTA_0359	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0361	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0362	SSF53448	Nucleotide-diphospho-sugar transferases
pRALTA_0363	SSF88713	Glycoside hydrolase/deacetylase
pRALTA_0364	SSF46785	"Winged helix" DNA-binding domain
pRALTA_0364	SSF53850	Periplasmic binding protein-like II
pRALTA_0366	SSF46689	Homeodomain-like
pRALTA_0366	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0366	SSF55781	GAF domain-like
pRALTA_0367	SSF46689	Homeodomain-like
pRALTA_0368	SSF53098	Ribonuclease H-like
pRALTA_0372	SSF53807	"Helical backbone" metal receptor
pRALTA_0373	SSF53807	"Helical backbone" metal receptor
pRALTA_0374	SSF53146	Nitrogenase accessory factor-like
pRALTA_0379	SSF51905	FAD/NAD(P)-binding domain
pRALTA_0379	SSF54373	FAD-linked reductases, C-terminal domain
pRALTA_0380	SSF52402	Adenine nucleotide alpha hydrolases-like
pRALTA_0380	SSF52467	DHS-like NAD/FAD-binding domain
pRALTA_0381	SSF52402	Adenine nucleotide alpha hydrolases-like
pRALTA_0383	SSF51569	Aldolase
pRALTA_0384	SSF102114	Radical SAM enzymes
pRALTA_0384	SSF53146	Nitrogenase accessory factor-like
pRALTA_0385	SSF54862	4Fe-4S ferredoxins
pRALTA_0387	SSF159203	NifT/FixU-like
pRALTA_0390	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0391	SSF53807	"Helical backbone" metal receptor
pRALTA_0392	SSF53807	"Helical backbone" metal receptor
pRALTA_0394	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0395	SSF53383	PLP-dependent transferases
pRALTA_0396	SSF52467	DHS-like NAD/FAD-binding domain
pRALTA_0396	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
pRALTA_0398	SSF52009	Phosphohistidine domain
pRALTA_0398	SSF56059	Glutathione synthetase ATP-binding domain-like
pRALTA_0406	SSF111369	HlyD-like secretion proteins
pRALTA_0407	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
pRALTA_0407	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
pRALTA_0407	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
pRALTA_0412	SSF46689	Homeodomain-like
pRALTA_0413	SSF53098	Ribonuclease H-like
pRALTA_0415	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0416	SSF48295	TrpR-like
pRALTA_0418	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0419	SSF53098	Ribonuclease H-like
pRALTA_0425	SSF49265	Fibronectin type III
pRALTA_0425	SSF53474	alpha/beta-Hydrolases
pRALTA_0426	SSF53098	Ribonuclease H-like
pRALTA_0431	SSF53720	ALDH-like
pRALTA_0434	SSF46785	"Winged helix" DNA-binding domain
pRALTA_0434	SSF55781	GAF domain-like
pRALTA_0436	SSF47413	lambda repressor-like DNA-binding domains
pRALTA_0436	SSF51182	RmlC-like cupins
pRALTA_0438	SSF53098	Ribonuclease H-like
pRALTA_0439	SSF48295	TrpR-like
pRALTA_0442	SSF50129	GroES-like
pRALTA_0442	SSF51735	NAD(P)-binding Rossmann-fold domains
pRALTA_0446	SSF48295	TrpR-like
pRALTA_0449	SSF48264	Cytochrome P450
pRALTA_0454	SSF53098	Ribonuclease H-like
pRALTA_0456	SSF46689	Homeodomain-like
pRALTA_0457	SSF46689	Homeodomain-like
pRALTA_0457	SSF53098	Ribonuclease H-like
pRALTA_0461	SSF47240	Ferritin-like
pRALTA_0462	SSF110814	TmoB-like
pRALTA_0465	SSF56029	Monooxygenase (hydroxylase) regulatory protein
pRALTA_0466	SSF47240	Ferritin-like
pRALTA_0467	SSF53098	Ribonuclease H-like
pRALTA_0479	SSF54611	SecB-like
pRALTA_0483	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0484	SSF53098	Ribonuclease H-like
pRALTA_0488	SSF51126	Pectin lyase-like
pRALTA_0489	SSF53098	Ribonuclease H-like
pRALTA_0506	SSF53474	alpha/beta-Hydrolases
pRALTA_0509	SSF53098	Ribonuclease H-like
pRALTA_0510	SSF81273	H-NS histone-like proteins
pRALTA_0511	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0512	SSF53098	Ribonuclease H-like
pRALTA_0514	SSF53098	Ribonuclease H-like
pRALTA_0515	SSF49265	Fibronectin type III
pRALTA_0515	SSF53474	alpha/beta-Hydrolases
pRALTA_0521	SSF48295	TrpR-like
pRALTA_0528	SSF53098	Ribonuclease H-like
pRALTA_0531	SSF50993	Peptidase/esterase 'gauge' domain
pRALTA_0531	SSF53474	alpha/beta-Hydrolases
pRALTA_0544	SSF53098	Ribonuclease H-like
pRALTA_0546	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
pRALTA_0549	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0557	SSF46785	"Winged helix" DNA-binding domain
pRALTA_0557	SSF54909	Dimeric alpha+beta barrel
pRALTA_0566	SSF56601	beta-lactamase/transpeptidase-like
pRALTA_0567	SSF56601	beta-lactamase/transpeptidase-like
pRALTA_0569	SSF53098	Ribonuclease H-like
pRALTA_0572	SSF103473	MFS general substrate transporter
pRALTA_0572	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0573	SSF52777	CoA-dependent acyltransferases
pRALTA_0574	SSF51905	FAD/NAD(P)-binding domain
pRALTA_0574	SSF54373	FAD-linked reductases, C-terminal domain
pRALTA_0575	SSF53383	PLP-dependent transferases
pRALTA_0576	SSF53098	Ribonuclease H-like
pRALTA_0579	SSF53098	Ribonuclease H-like
pRALTA_0580	SSF48295	TrpR-like
pRALTA_0581	SSF50249	Nucleic acid-binding proteins
pRALTA_0586	SSF53098	Ribonuclease H-like
pRALTA_0590	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0592	SSF46689	Homeodomain-like
pRALTA_0596	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0602	SSF53098	Ribonuclease H-like
pRALTA_0611	SSF46689	Homeodomain-like
pRALTA_0614	SSF56349	DNA breaking-rejoining enzymes
pRALTA_0615	SSF56349	DNA breaking-rejoining enzymes
pRALTA_0616	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0620	SSF140931	Fic-like
pRALTA_0621	SSF56349	DNA breaking-rejoining enzymes
pRALTA_0622	SSF88723	PIN domain-like
pRALTA_0623	SSF143120	YefM-like
pRALTA_0627	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0628	SSF161098	MetI-like
pRALTA_0632	SSF56349	DNA breaking-rejoining enzymes
pRALTA_0640	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
pRALTA_0640	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
pRALTA_0640	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
pRALTA_0641	SSF111369	HlyD-like secretion proteins
pRALTA_0642	SSF56954	Outer membrane efflux proteins (OEP)
pRALTA_0645	SSF160240	Cation efflux protein cytoplasmic domain-like
pRALTA_0645	SSF161111	Cation efflux protein transmembrane domain-like
pRALTA_0646	SSF103473	MFS general substrate transporter
pRALTA_0647	SSF52218	Flavoproteins
pRALTA_0648	SSF52833	Thioredoxin-like
pRALTA_0650	SSF52788	Phosphotyrosine protein phosphatases I
pRALTA_0651	SSF52788	Phosphotyrosine protein phosphatases I
pRALTA_0652	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
pRALTA_0653	SSF46785	"Winged helix" DNA-binding domain
pRALTA_0656	SSF47823	lambda integrase-like, N-terminal domain
pRALTA_0656	SSF56349	DNA breaking-rejoining enzymes
pRALTA_0659	SSF81273	H-NS histone-like proteins
pRALTA_0660	SSF81273	H-NS histone-like proteins
pRALTA_0662	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_0666	SSF81273	H-NS histone-like proteins
pRALTA_0669	SSF81273	H-NS histone-like proteins
pRALTA_0670	SSF46955	Putative DNA-binding domain
pRALTA_0671	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pRALTA_CDS321917D	SSF54862	4Fe-4S ferredoxins
pRALTA_CDS323616R	SSF54862	4Fe-4S ferredoxins