Cyagr_0003	PWY-7158	L-phenylalanine degradation V
Cyagr_0013	PWY-5532	adenosine nucleotides degradation IV
Cyagr_0013	PWY-5723	Rubisco shunt
Cyagr_0014	PWY-5532	adenosine nucleotides degradation IV
Cyagr_0014	PWY-5723	Rubisco shunt
Cyagr_0018	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Cyagr_0022	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cyagr_0022	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cyagr_0023	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cyagr_0023	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cyagr_0024	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cyagr_0024	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cyagr_0031	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Cyagr_0031	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Cyagr_0035	PWY-5663	tetrahydrobiopterin biosynthesis I
Cyagr_0035	PWY-5664	tetrahydrobiopterin biosynthesis II
Cyagr_0035	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cyagr_0035	PWY-6703	preQ<sub>0</sub> biosynthesis
Cyagr_0035	PWY-6983	tetrahydrobiopterin biosynthesis III
Cyagr_0035	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Cyagr_0037	PWY-4381	fatty acid biosynthesis initiation I
Cyagr_0037	PWY-5743	3-hydroxypropanoate cycle
Cyagr_0037	PWY-5744	glyoxylate assimilation
Cyagr_0037	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cyagr_0037	PWY-6679	jadomycin biosynthesis
Cyagr_0037	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cyagr_0038	PWY-6622	heptadecane biosynthesis
Cyagr_0038	PWY-7032	alkane biosynthesis I
Cyagr_0039	PWY-282	cuticular wax biosynthesis
Cyagr_0039	PWY-6622	heptadecane biosynthesis
Cyagr_0039	PWY-7032	alkane biosynthesis I
Cyagr_0040	PWY-6167	flavin biosynthesis II (archaea)
Cyagr_0046	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cyagr_0049	PWY-5101	L-isoleucine biosynthesis II
Cyagr_0049	PWY-5103	L-isoleucine biosynthesis III
Cyagr_0049	PWY-5104	L-isoleucine biosynthesis IV
Cyagr_0049	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Cyagr_0049	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Cyagr_0049	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Cyagr_0049	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cyagr_0053	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cyagr_0053	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cyagr_0053	PWY-6268	adenosylcobalamin salvage from cobalamin
Cyagr_0053	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cyagr_0059	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cyagr_0059	PWY-5723	Rubisco shunt
Cyagr_0073	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cyagr_0080	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cyagr_0080	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cyagr_0088	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cyagr_0088	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cyagr_0102	PWY-7158	L-phenylalanine degradation V
Cyagr_0113	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cyagr_0113	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cyagr_0114	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
Cyagr_0114	PWY-622	starch biosynthesis
Cyagr_0135	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cyagr_0135	PWY-6148	tetrahydromethanopterin biosynthesis
Cyagr_0135	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Cyagr_0135	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Cyagr_0144	PWY-7158	L-phenylalanine degradation V
Cyagr_0188	PWY-4061	glutathione-mediated detoxification I
Cyagr_0188	PWY-6842	glutathione-mediated detoxification II
Cyagr_0188	PWY-7112	4-hydroxy-2-nonenal detoxification
Cyagr_0188	PWY-7533	gliotoxin biosynthesis
Cyagr_0206	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Cyagr_0209	PWY-2941	L-lysine biosynthesis II
Cyagr_0209	PWY-2942	L-lysine biosynthesis III
Cyagr_0209	PWY-5097	L-lysine biosynthesis VI
Cyagr_0212	PWY-6349	CDP-archaeol biosynthesis
Cyagr_0219	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cyagr_0230	PWY-5941	glycogen degradation II (eukaryotic)
Cyagr_0230	PWY-6724	starch degradation II
Cyagr_0230	PWY-6737	starch degradation V
Cyagr_0230	PWY-7238	sucrose biosynthesis II
Cyagr_0307	PWY-101	photosynthesis light reactions
Cyagr_0307	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Cyagr_0308	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cyagr_0318	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Cyagr_0318	PWY-2201	folate transformations I
Cyagr_0318	PWY-3841	folate transformations II
Cyagr_0318	PWY-5030	L-histidine degradation III
Cyagr_0318	PWY-5497	purine nucleobases degradation II (anaerobic)
Cyagr_0318	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Cyagr_0326	PWY-6871	3-methylbutanol biosynthesis
Cyagr_0327	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
Cyagr_0327	PWY-622	starch biosynthesis
Cyagr_0350	PWY-5686	UMP biosynthesis
Cyagr_0354	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cyagr_0354	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cyagr_0356	PWY-622	starch biosynthesis
Cyagr_0362	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cyagr_0362	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Cyagr_0362	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cyagr_0362	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cyagr_0375	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Cyagr_0375	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Cyagr_0376	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Cyagr_0376	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Cyagr_0383	PWY-101	photosynthesis light reactions
Cyagr_0383	PWY-6785	hydrogen production VIII
Cyagr_0391	PWY-2723	trehalose degradation V
Cyagr_0391	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cyagr_0391	PWY-5661	GDP-glucose biosynthesis
Cyagr_0391	PWY-7238	sucrose biosynthesis II
Cyagr_0391	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cyagr_0392	PWY-702	L-methionine biosynthesis II
Cyagr_0402	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cyagr_0404	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cyagr_0408	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
Cyagr_0408	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
Cyagr_0408	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
Cyagr_0408	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
Cyagr_0408	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
Cyagr_0408	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
Cyagr_0408	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
Cyagr_0408	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
Cyagr_0408	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Cyagr_0408	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
Cyagr_0414	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cyagr_0414	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cyagr_0419	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Cyagr_0419	PWY-7118	chitin degradation to ethanol
Cyagr_0433	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cyagr_0433	PWY-5686	UMP biosynthesis
Cyagr_0433	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cyagr_0438	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Cyagr_0461	PWY-7560	methylerythritol phosphate pathway II
Cyagr_0475	PWY-381	nitrate reduction II (assimilatory)
Cyagr_0475	PWY-5675	nitrate reduction V (assimilatory)
Cyagr_0475	PWY-6549	L-glutamine biosynthesis III
Cyagr_0475	PWY-6963	ammonia assimilation cycle I
Cyagr_0475	PWY-6964	ammonia assimilation cycle II
Cyagr_0477	PWY-6832	2-aminoethylphosphonate degradation II
Cyagr_0488	PWY-5917	phycocyanobilin biosynthesis
Cyagr_0498	PWY-6454	vancomycin resistance I
Cyagr_0498	PWY-6455	vancomycin resistance II
Cyagr_0500	PWY-6683	sulfate reduction III (assimilatory)
Cyagr_0515	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cyagr_0515	PWY-5723	Rubisco shunt
Cyagr_0516	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cyagr_0517	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cyagr_0518	PWY-622	starch biosynthesis
Cyagr_0520	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cyagr_0520	PWY-6855	chitin degradation I (archaea)
Cyagr_0520	PWY-6906	chitin derivatives degradation
Cyagr_0526	PWY-5101	L-isoleucine biosynthesis II
Cyagr_0526	PWY-5103	L-isoleucine biosynthesis III
Cyagr_0526	PWY-5104	L-isoleucine biosynthesis IV
Cyagr_0526	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cyagr_0532	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cyagr_0532	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cyagr_0532	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cyagr_0533	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cyagr_0533	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cyagr_0533	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cyagr_0539	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cyagr_0539	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cyagr_0539	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cyagr_0560	PWY-5667	CDP-diacylglycerol biosynthesis I
Cyagr_0560	PWY-5981	CDP-diacylglycerol biosynthesis III
Cyagr_0565	PWY-2201	folate transformations I
Cyagr_0565	PWY-3841	folate transformations II
Cyagr_0566	PWY-5057	L-valine degradation II
Cyagr_0566	PWY-5076	L-leucine degradation III
Cyagr_0566	PWY-5078	L-isoleucine degradation II
Cyagr_0566	PWY-5101	L-isoleucine biosynthesis II
Cyagr_0566	PWY-5103	L-isoleucine biosynthesis III
Cyagr_0566	PWY-5104	L-isoleucine biosynthesis IV
Cyagr_0566	PWY-5108	L-isoleucine biosynthesis V
Cyagr_0576	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cyagr_0576	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cyagr_0579	PWY-6823	molybdenum cofactor biosynthesis
Cyagr_0579	PWY-6891	thiazole biosynthesis II (Bacillus)
Cyagr_0579	PWY-6892	thiazole biosynthesis I (E. coli)
Cyagr_0579	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Cyagr_0580	PWY-2941	L-lysine biosynthesis II
Cyagr_0580	PWY-5097	L-lysine biosynthesis VI
Cyagr_0583	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Cyagr_0584	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Cyagr_0584	PWY-3162	L-tryptophan degradation V (side chain pathway)
Cyagr_0584	PWY-5057	L-valine degradation II
Cyagr_0584	PWY-5076	L-leucine degradation III
Cyagr_0584	PWY-5078	L-isoleucine degradation II
Cyagr_0584	PWY-5079	L-phenylalanine degradation III
Cyagr_0584	PWY-5082	L-methionine degradation III
Cyagr_0584	PWY-5480	pyruvate fermentation to ethanol I
Cyagr_0584	PWY-5486	pyruvate fermentation to ethanol II
Cyagr_0584	PWY-5751	phenylethanol biosynthesis
Cyagr_0584	PWY-6028	acetoin degradation
Cyagr_0584	PWY-6313	serotonin degradation
Cyagr_0584	PWY-6333	acetaldehyde biosynthesis I
Cyagr_0584	PWY-6342	noradrenaline and adrenaline degradation
Cyagr_0584	PWY-6587	pyruvate fermentation to ethanol III
Cyagr_0584	PWY-6802	salidroside biosynthesis
Cyagr_0584	PWY-6871	3-methylbutanol biosynthesis
Cyagr_0584	PWY-7013	L-1,2-propanediol degradation
Cyagr_0584	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cyagr_0584	PWY-7118	chitin degradation to ethanol
Cyagr_0584	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Cyagr_0584	PWY-7557	dehydrodiconiferyl alcohol degradation
Cyagr_0585	PWY-3801	sucrose degradation II (sucrose synthase)
Cyagr_0585	PWY-5054	sorbitol biosynthesis I
Cyagr_0585	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Cyagr_0585	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cyagr_0585	PWY-5659	GDP-mannose biosynthesis
Cyagr_0585	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cyagr_0585	PWY-621	sucrose degradation III (sucrose invertase)
Cyagr_0585	PWY-622	starch biosynthesis
Cyagr_0585	PWY-6531	mannitol cycle
Cyagr_0585	PWY-6981	chitin biosynthesis
Cyagr_0585	PWY-7238	sucrose biosynthesis II
Cyagr_0585	PWY-7347	sucrose biosynthesis III
Cyagr_0585	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cyagr_0590	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cyagr_0590	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Cyagr_0591	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cyagr_0591	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cyagr_0592	PWY-6167	flavin biosynthesis II (archaea)
Cyagr_0592	PWY-6168	flavin biosynthesis III (fungi)
Cyagr_0592	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Cyagr_0625	PWY-6891	thiazole biosynthesis II (Bacillus)
Cyagr_0625	PWY-6892	thiazole biosynthesis I (E. coli)
Cyagr_0625	PWY-7560	methylerythritol phosphate pathway II
Cyagr_0631	PWY-1042	glycolysis IV (plant cytosol)
Cyagr_0631	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cyagr_0631	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cyagr_0631	PWY-5723	Rubisco shunt
Cyagr_0631	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cyagr_0631	PWY-6886	1-butanol autotrophic biosynthesis
Cyagr_0631	PWY-6901	superpathway of glucose and xylose degradation
Cyagr_0631	PWY-7003	glycerol degradation to butanol
Cyagr_0631	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Cyagr_0631	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cyagr_0647	PWY-6164	3-dehydroquinate biosynthesis I
Cyagr_0654	PWY-5316	nicotine biosynthesis
Cyagr_0654	PWY-7342	superpathway of nicotine biosynthesis
Cyagr_0655	PWY-1042	glycolysis IV (plant cytosol)
Cyagr_0655	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cyagr_0655	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cyagr_0655	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cyagr_0655	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cyagr_0662	PWY-6351	D-<i>myo</i>-inositol (1,4,5)-trisphosphate biosynthesis
Cyagr_0662	PWY-6367	D-<i>myo</i>-inositol-5-phosphate metabolism
Cyagr_0662	PWY-7039	phosphatidate metabolism, as a signaling molecule
Cyagr_0672	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cyagr_0672	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cyagr_0672	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cyagr_0687	PWY-7560	methylerythritol phosphate pathway II
Cyagr_0696	PWY-1042	glycolysis IV (plant cytosol)
Cyagr_0696	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cyagr_0696	PWY-6901	superpathway of glucose and xylose degradation
Cyagr_0696	PWY-7003	glycerol degradation to butanol
Cyagr_0725	PWY-1042	glycolysis IV (plant cytosol)
Cyagr_0725	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cyagr_0725	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cyagr_0725	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cyagr_0725	PWY-7385	1,3-propanediol biosynthesis (engineered)
Cyagr_0728	PWY-4381	fatty acid biosynthesis initiation I
Cyagr_0728	PWY-5743	3-hydroxypropanoate cycle
Cyagr_0728	PWY-5744	glyoxylate assimilation
Cyagr_0728	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Cyagr_0728	PWY-6679	jadomycin biosynthesis
Cyagr_0728	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cyagr_0731	PWY-5723	Rubisco shunt
Cyagr_0732	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Cyagr_0750	PWY-5199	factor 420 polyglutamylation
Cyagr_0753	PWY-5392	reductive TCA cycle II
Cyagr_0753	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cyagr_0753	PWY-5690	TCA cycle II (plants and fungi)
Cyagr_0753	PWY-5913	TCA cycle VI (obligate autotrophs)
Cyagr_0753	PWY-6728	methylaspartate cycle
Cyagr_0753	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cyagr_0753	PWY-7254	TCA cycle VII (acetate-producers)
Cyagr_0753	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cyagr_0763	PWY-5269	cardiolipin biosynthesis II
Cyagr_0763	PWY-5668	cardiolipin biosynthesis I
Cyagr_0788	PWY-5506	methanol oxidation to formaldehyde IV
Cyagr_0790	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cyagr_0790	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cyagr_0791	PWY-2941	L-lysine biosynthesis II
Cyagr_0791	PWY-2942	L-lysine biosynthesis III
Cyagr_0791	PWY-5097	L-lysine biosynthesis VI
Cyagr_0796	PWY-6605	adenine and adenosine salvage II
Cyagr_0796	PWY-6610	adenine and adenosine salvage IV
Cyagr_0812	PWY-6614	tetrahydrofolate biosynthesis
Cyagr_0813	PWY-1042	glycolysis IV (plant cytosol)
Cyagr_0813	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cyagr_0813	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cyagr_0813	PWY-7003	glycerol degradation to butanol
Cyagr_0818	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cyagr_0818	PWY-5686	UMP biosynthesis
Cyagr_0818	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cyagr_0826	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cyagr_0831	PWY-5392	reductive TCA cycle II
Cyagr_0831	PWY-5537	pyruvate fermentation to acetate V
Cyagr_0831	PWY-5538	pyruvate fermentation to acetate VI
Cyagr_0831	PWY-5690	TCA cycle II (plants and fungi)
Cyagr_0831	PWY-5913	TCA cycle VI (obligate autotrophs)
Cyagr_0831	PWY-6728	methylaspartate cycle
Cyagr_0831	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cyagr_0831	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Cyagr_0854	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cyagr_0854	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cyagr_0893	PWY-6475	<i>trans</i>-lycopene biosynthesis II (plants)
Cyagr_0910	PWY-5659	GDP-mannose biosynthesis
Cyagr_0910	PWY-6073	alginate biosynthesis I (algal)
Cyagr_0910	PWY-6082	alginate biosynthesis II (bacterial)
Cyagr_0910	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Cyagr_0930	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Cyagr_0930	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Cyagr_0930	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Cyagr_0936	PWY-5381	pyridine nucleotide cycling (plants)
Cyagr_0941	PWY-6854	ethylene biosynthesis III (microbes)
Cyagr_0942	PWY-6825	phosphatidylcholine biosynthesis V
Cyagr_0993	PWY-40	putrescine biosynthesis I
Cyagr_0993	PWY-6305	putrescine biosynthesis IV
Cyagr_0996	PWY-381	nitrate reduction II (assimilatory)
Cyagr_0996	PWY-5675	nitrate reduction V (assimilatory)
Cyagr_0996	PWY-6549	L-glutamine biosynthesis III
Cyagr_0996	PWY-6963	ammonia assimilation cycle I
Cyagr_0996	PWY-6964	ammonia assimilation cycle II
Cyagr_1004	PWY-5344	L-homocysteine biosynthesis
Cyagr_1005	PWY-381	nitrate reduction II (assimilatory)
Cyagr_1005	PWY-5675	nitrate reduction V (assimilatory)
Cyagr_1005	PWY-6549	L-glutamine biosynthesis III
Cyagr_1005	PWY-6963	ammonia assimilation cycle I
Cyagr_1005	PWY-6964	ammonia assimilation cycle II
Cyagr_1013	PWY-381	nitrate reduction II (assimilatory)
Cyagr_1013	PWY-5675	nitrate reduction V (assimilatory)
Cyagr_1013	PWY-6549	L-glutamine biosynthesis III
Cyagr_1013	PWY-6963	ammonia assimilation cycle I
Cyagr_1013	PWY-6964	ammonia assimilation cycle II
Cyagr_1026	PWY-5874	heme degradation
Cyagr_1026	PWY-5915	phycoerythrobilin biosynthesis I
Cyagr_1026	PWY-5917	phycocyanobilin biosynthesis
Cyagr_1026	PWY-7170	phytochromobilin biosynthesis
Cyagr_1028	PWY-5481	pyruvate fermentation to lactate
Cyagr_1028	PWY-6901	superpathway of glucose and xylose degradation
Cyagr_1029	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Cyagr_1029	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cyagr_1029	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cyagr_1029	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Cyagr_1030	PWY-5344	L-homocysteine biosynthesis
Cyagr_1030	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Cyagr_1033	PWY-6823	molybdenum cofactor biosynthesis
Cyagr_1033	PWY-6891	thiazole biosynthesis II (Bacillus)
Cyagr_1033	PWY-6892	thiazole biosynthesis I (E. coli)
Cyagr_1033	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Cyagr_1036	PWY-5350	thiosulfate disproportionation III (rhodanese)
Cyagr_1037	PWY-6936	seleno-amino acid biosynthesis
Cyagr_1038	PWY-282	cuticular wax biosynthesis
Cyagr_1038	PWY-6622	heptadecane biosynthesis
Cyagr_1038	PWY-7032	alkane biosynthesis I
Cyagr_1045	PWY-6936	seleno-amino acid biosynthesis
Cyagr_1058	PWY-1042	glycolysis IV (plant cytosol)
Cyagr_1058	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cyagr_1058	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cyagr_1058	PWY-5723	Rubisco shunt
Cyagr_1058	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cyagr_1058	PWY-6886	1-butanol autotrophic biosynthesis
Cyagr_1058	PWY-6901	superpathway of glucose and xylose degradation
Cyagr_1058	PWY-7003	glycerol degradation to butanol
Cyagr_1058	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Cyagr_1058	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cyagr_1060	PWY-5941	glycogen degradation II (eukaryotic)
Cyagr_1060	PWY-622	starch biosynthesis
Cyagr_1060	PWY-6731	starch degradation III
Cyagr_1060	PWY-6737	starch degradation V
Cyagr_1060	PWY-7238	sucrose biosynthesis II
Cyagr_1081	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cyagr_1081	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cyagr_1082	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cyagr_1099	PWY-4041	&gamma;-glutamyl cycle
Cyagr_1099	PWY-5826	hypoglycin biosynthesis
Cyagr_1108	PWY-1281	sulfoacetaldehyde degradation I
Cyagr_1108	PWY-5482	pyruvate fermentation to acetate II
Cyagr_1108	PWY-5485	pyruvate fermentation to acetate IV
Cyagr_1108	PWY-5497	purine nucleobases degradation II (anaerobic)
Cyagr_1108	PWY-6637	sulfolactate degradation II
Cyagr_1116	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cyagr_1121	PWY-3221	dTDP-L-rhamnose biosynthesis II
Cyagr_1121	PWY-6808	dTDP-D-forosamine biosynthesis
Cyagr_1121	PWY-6942	dTDP-D-desosamine biosynthesis
Cyagr_1121	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Cyagr_1121	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Cyagr_1121	PWY-6974	dTDP-L-olivose biosynthesis
Cyagr_1121	PWY-6976	dTDP-L-mycarose biosynthesis
Cyagr_1121	PWY-7104	dTDP-L-megosamine biosynthesis
Cyagr_1121	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Cyagr_1121	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Cyagr_1121	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Cyagr_1121	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Cyagr_1121	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Cyagr_1121	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Cyagr_1121	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Cyagr_1121	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Cyagr_1151	PWY-7560	methylerythritol phosphate pathway II
Cyagr_1165	PWY-6829	tRNA methylation (yeast)
Cyagr_1167	PWY-5101	L-isoleucine biosynthesis II
Cyagr_1167	PWY-5103	L-isoleucine biosynthesis III
Cyagr_1167	PWY-5104	L-isoleucine biosynthesis IV
Cyagr_1167	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Cyagr_1167	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Cyagr_1167	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Cyagr_1167	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cyagr_1170	PWY-101	photosynthesis light reactions
Cyagr_1170	PWY-6785	hydrogen production VIII
Cyagr_1179	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Cyagr_1179	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Cyagr_1181	PWY-6938	NADH repair
Cyagr_1191	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Cyagr_1191	PWY-5739	GDP-D-perosamine biosynthesis
Cyagr_1191	PWY-5740	GDP-L-colitose biosynthesis
Cyagr_1191	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Cyagr_1192	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Cyagr_1193	PWY-3821	galactose degradation III
Cyagr_1193	PWY-6317	galactose degradation I (Leloir pathway)
Cyagr_1193	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Cyagr_1193	PWY-6527	stachyose degradation
Cyagr_1193	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Cyagr_1193	PWY-7344	UDP-D-galactose biosynthesis
Cyagr_1218	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cyagr_1218	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cyagr_1218	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cyagr_1230	PWY-6829	tRNA methylation (yeast)
Cyagr_1230	PWY-7285	methylwyosine biosynthesis
Cyagr_1230	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Cyagr_1231	PWY-7560	methylerythritol phosphate pathway II
Cyagr_1237	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Cyagr_1237	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Cyagr_1237	PWY-6897	thiamin salvage II
Cyagr_1237	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Cyagr_1237	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Cyagr_1237	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Cyagr_1237	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Cyagr_1238	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Cyagr_1238	PWY-6167	flavin biosynthesis II (archaea)
Cyagr_1238	PWY-6168	flavin biosynthesis III (fungi)
Cyagr_1240	PWY-5381	pyridine nucleotide cycling (plants)
Cyagr_1240	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Cyagr_1240	PWY-6596	adenosine nucleotides degradation I
Cyagr_1240	PWY-6606	guanosine nucleotides degradation II
Cyagr_1240	PWY-6607	guanosine nucleotides degradation I
Cyagr_1240	PWY-6608	guanosine nucleotides degradation III
Cyagr_1240	PWY-7185	UTP and CTP dephosphorylation I
Cyagr_1242	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Cyagr_1242	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cyagr_1242	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Cyagr_1245	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cyagr_1260	PWY-4981	L-proline biosynthesis II (from arginine)
Cyagr_1260	PWY-4984	urea cycle
Cyagr_1260	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cyagr_1287	PWY-6854	ethylene biosynthesis III (microbes)
Cyagr_1288	PWY-6700	queuosine biosynthesis
Cyagr_1292	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Cyagr_1292	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Cyagr_1294	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Cyagr_1304	PWY-3461	L-tyrosine biosynthesis II
Cyagr_1304	PWY-3462	L-phenylalanine biosynthesis II
Cyagr_1304	PWY-6120	L-tyrosine biosynthesis III
Cyagr_1304	PWY-6627	salinosporamide A biosynthesis
Cyagr_1337	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cyagr_1337	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cyagr_1340	PWY-2161	folate polyglutamylation
Cyagr_1342	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cyagr_1342	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cyagr_1349	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cyagr_1349	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cyagr_1354	PWY-6654	phosphopantothenate biosynthesis III
Cyagr_1359	PWY-5101	L-isoleucine biosynthesis II
Cyagr_1359	PWY-5103	L-isoleucine biosynthesis III
Cyagr_1359	PWY-5104	L-isoleucine biosynthesis IV
Cyagr_1359	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cyagr_1377	PWY-5839	menaquinol-7 biosynthesis
Cyagr_1377	PWY-5844	menaquinol-9 biosynthesis
Cyagr_1377	PWY-5849	menaquinol-6 biosynthesis
Cyagr_1377	PWY-5890	menaquinol-10 biosynthesis
Cyagr_1377	PWY-5891	menaquinol-11 biosynthesis
Cyagr_1377	PWY-5892	menaquinol-12 biosynthesis
Cyagr_1377	PWY-5895	menaquinol-13 biosynthesis
Cyagr_1381	PWY-5068	chlorophyll cycle
Cyagr_1381	PWY-5086	chlorophyll <i>a</i> biosynthesis I
Cyagr_1423	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Cyagr_1440	PWY-1042	glycolysis IV (plant cytosol)
Cyagr_1440	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cyagr_1440	PWY-6901	superpathway of glucose and xylose degradation
Cyagr_1440	PWY-7003	glycerol degradation to butanol
Cyagr_1450	PWY-101	photosynthesis light reactions
Cyagr_1450	PWY-6785	hydrogen production VIII
Cyagr_1454	PWY-4061	glutathione-mediated detoxification I
Cyagr_1454	PWY-6842	glutathione-mediated detoxification II
Cyagr_1454	PWY-7112	4-hydroxy-2-nonenal detoxification
Cyagr_1454	PWY-7533	gliotoxin biosynthesis
Cyagr_1462	PWY-5386	methylglyoxal degradation I
Cyagr_1463	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cyagr_1463	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cyagr_1474	PWY-842	starch degradation I
Cyagr_1511	PWY-5350	thiosulfate disproportionation III (rhodanese)
Cyagr_1514	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
Cyagr_1514	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Cyagr_1515	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Cyagr_1532	PWY-6823	molybdenum cofactor biosynthesis
Cyagr_1532	PWY-6891	thiazole biosynthesis II (Bacillus)
Cyagr_1532	PWY-6892	thiazole biosynthesis I (E. coli)
Cyagr_1532	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Cyagr_1550	PWY-6749	CMP-legionaminate biosynthesis I
Cyagr_1566	PWY-3961	phosphopantothenate biosynthesis II
Cyagr_1627	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Cyagr_1627	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Cyagr_1643	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Cyagr_1643	PWY-7205	CMP phosphorylation
Cyagr_1645	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cyagr_1645	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cyagr_1645	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cyagr_1659	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cyagr_1659	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cyagr_1664	PWY-5958	acridone alkaloid biosynthesis
Cyagr_1664	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Cyagr_1664	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Cyagr_1665	PWY-6840	homoglutathione biosynthesis
Cyagr_1665	PWY-7255	ergothioneine biosynthesis I (bacteria)
Cyagr_1666	PWY-1622	formaldehyde assimilation I (serine pathway)
Cyagr_1666	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Cyagr_1666	PWY-5913	TCA cycle VI (obligate autotrophs)
Cyagr_1666	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cyagr_1666	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Cyagr_1666	PWY-6549	L-glutamine biosynthesis III
Cyagr_1666	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cyagr_1666	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Cyagr_1666	PWY-7124	ethylene biosynthesis V (engineered)
Cyagr_1670	PWY-6834	spermidine biosynthesis III
Cyagr_1672	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cyagr_1672	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cyagr_1672	PWY-6268	adenosylcobalamin salvage from cobalamin
Cyagr_1672	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cyagr_1733	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cyagr_1800	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
Cyagr_1830	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cyagr_1842	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cyagr_1850	PWY-5491	diethylphosphate degradation
Cyagr_1852	PWY-101	photosynthesis light reactions
Cyagr_1852	PWY-6785	hydrogen production VIII
Cyagr_1853	PWY-101	photosynthesis light reactions
Cyagr_1853	PWY-6785	hydrogen production VIII
Cyagr_1855	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cyagr_1857	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Cyagr_1857	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Cyagr_1857	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Cyagr_1869	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Cyagr_1874	PWY-5097	L-lysine biosynthesis VI
Cyagr_1879	PWY-101	photosynthesis light reactions
Cyagr_1879	PWY-6785	hydrogen production VIII
Cyagr_1880	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cyagr_1881	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cyagr_1881	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Cyagr_1881	PWY-7242	D-fructuronate degradation
Cyagr_1881	PWY-7310	D-glucosaminate degradation
Cyagr_1883	PWY-5278	sulfite oxidation III
Cyagr_1883	PWY-5340	sulfate activation for sulfonation
Cyagr_1883	PWY-6683	sulfate reduction III (assimilatory)
Cyagr_1883	PWY-6932	selenate reduction
Cyagr_1889	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cyagr_1889	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cyagr_1892	PWY-5686	UMP biosynthesis
Cyagr_1897	PWY-6167	flavin biosynthesis II (archaea)
Cyagr_1908	PWY-3162	L-tryptophan degradation V (side chain pathway)
Cyagr_1908	PWY-5057	L-valine degradation II
Cyagr_1908	PWY-5076	L-leucine degradation III
Cyagr_1908	PWY-5078	L-isoleucine degradation II
Cyagr_1908	PWY-5079	L-phenylalanine degradation III
Cyagr_1908	PWY-5082	L-methionine degradation III
Cyagr_1908	PWY-5480	pyruvate fermentation to ethanol I
Cyagr_1908	PWY-5486	pyruvate fermentation to ethanol II
Cyagr_1908	PWY-5751	phenylethanol biosynthesis
Cyagr_1908	PWY-6028	acetoin degradation
Cyagr_1908	PWY-6313	serotonin degradation
Cyagr_1908	PWY-6333	acetaldehyde biosynthesis I
Cyagr_1908	PWY-6342	noradrenaline and adrenaline degradation
Cyagr_1908	PWY-6587	pyruvate fermentation to ethanol III
Cyagr_1908	PWY-6802	salidroside biosynthesis
Cyagr_1908	PWY-6871	3-methylbutanol biosynthesis
Cyagr_1908	PWY-7013	L-1,2-propanediol degradation
Cyagr_1908	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Cyagr_1908	PWY-7118	chitin degradation to ethanol
Cyagr_1908	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Cyagr_1908	PWY-7557	dehydrodiconiferyl alcohol degradation
Cyagr_1967	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Cyagr_1967	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Cyagr_1967	PWY-6896	thiamin salvage I
Cyagr_1967	PWY-6897	thiamin salvage II
Cyagr_1991	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cyagr_1991	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cyagr_2009	PWY-6749	CMP-legionaminate biosynthesis I
Cyagr_2015	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cyagr_2021	PWY-6788	cellulose degradation II (fungi)
Cyagr_2047	PWY-4041	&gamma;-glutamyl cycle
Cyagr_2055	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cyagr_2056	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cyagr_2056	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cyagr_2056	PWY-6268	adenosylcobalamin salvage from cobalamin
Cyagr_2056	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cyagr_2073	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cyagr_2073	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cyagr_2073	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cyagr_2074	PWY-1622	formaldehyde assimilation I (serine pathway)
Cyagr_2074	PWY-181	photorespiration
Cyagr_2074	PWY-2161	folate polyglutamylation
Cyagr_2074	PWY-2201	folate transformations I
Cyagr_2074	PWY-3661	glycine betaine degradation I
Cyagr_2074	PWY-3661-1	glycine betaine degradation II (mammalian)
Cyagr_2074	PWY-3841	folate transformations II
Cyagr_2074	PWY-5497	purine nucleobases degradation II (anaerobic)
Cyagr_2083	PWY-7560	methylerythritol phosphate pathway II
Cyagr_2086	PWY-6123	inosine-5'-phosphate biosynthesis I
Cyagr_2086	PWY-6124	inosine-5'-phosphate biosynthesis II
Cyagr_2086	PWY-7234	inosine-5'-phosphate biosynthesis III
Cyagr_2090	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cyagr_2090	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cyagr_2090	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cyagr_2091	PWY-6700	queuosine biosynthesis
Cyagr_2101	PWY-5686	UMP biosynthesis
Cyagr_2104	PWY-6749	CMP-legionaminate biosynthesis I
Cyagr_2105	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Cyagr_2114	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Cyagr_2114	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cyagr_2114	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cyagr_2114	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Cyagr_2116	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Cyagr_2116	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Cyagr_2116	PWY-5989	stearate biosynthesis II (bacteria and plants)
Cyagr_2116	PWY-6113	superpathway of mycolate biosynthesis
Cyagr_2116	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Cyagr_2116	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cyagr_2116	PWY-7096	triclosan resistance
Cyagr_2116	PWYG-321	mycolate biosynthesis
Cyagr_2117	PWY-6012	acyl carrier protein metabolism I
Cyagr_2117	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Cyagr_2123	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Cyagr_2123	PWY-6148	tetrahydromethanopterin biosynthesis
Cyagr_2123	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Cyagr_2123	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Cyagr_2125	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cyagr_2125	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cyagr_2148	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Cyagr_2149	PWY-3821	galactose degradation III
Cyagr_2149	PWY-6317	galactose degradation I (Leloir pathway)
Cyagr_2149	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Cyagr_2149	PWY-6527	stachyose degradation
Cyagr_2149	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Cyagr_2149	PWY-7344	UDP-D-galactose biosynthesis
Cyagr_2158	PWY-5874	heme degradation
Cyagr_2158	PWY-5915	phycoerythrobilin biosynthesis I
Cyagr_2158	PWY-5917	phycocyanobilin biosynthesis
Cyagr_2158	PWY-7170	phytochromobilin biosynthesis
Cyagr_2160	PWY-5913	TCA cycle VI (obligate autotrophs)
Cyagr_2160	PWY-6549	L-glutamine biosynthesis III
Cyagr_2160	PWY-6728	methylaspartate cycle
Cyagr_2160	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cyagr_2160	PWY-7124	ethylene biosynthesis V (engineered)
Cyagr_2160	PWY-7254	TCA cycle VII (acetate-producers)
Cyagr_2160	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cyagr_2163	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cyagr_2163	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cyagr_2171	PWY-5941	glycogen degradation II (eukaryotic)
Cyagr_2171	PWY-622	starch biosynthesis
Cyagr_2171	PWY-6731	starch degradation III
Cyagr_2171	PWY-6737	starch degradation V
Cyagr_2171	PWY-7238	sucrose biosynthesis II
Cyagr_2180	PWY-5659	GDP-mannose biosynthesis
Cyagr_2180	PWY-6073	alginate biosynthesis I (algal)
Cyagr_2180	PWY-6082	alginate biosynthesis II (bacterial)
Cyagr_2180	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Cyagr_2181	PWY-6749	CMP-legionaminate biosynthesis I
Cyagr_2182	PWY-101	photosynthesis light reactions
Cyagr_2182	PWY-6785	hydrogen production VIII
Cyagr_2185	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cyagr_2185	PWY-5723	Rubisco shunt
Cyagr_2185	PWY-6891	thiazole biosynthesis II (Bacillus)
Cyagr_2185	PWY-6892	thiazole biosynthesis I (E. coli)
Cyagr_2185	PWY-6901	superpathway of glucose and xylose degradation
Cyagr_2185	PWY-7560	methylerythritol phosphate pathway II
Cyagr_2192	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
Cyagr_2193	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
Cyagr_2193	PWY-5940	streptomycin biosynthesis
Cyagr_2202	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Cyagr_2229	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Cyagr_2231	PWY-6502	oxidized GTP and dGTP detoxification
Cyagr_2243	PWY-2781	<i>cis</i>-zeatin biosynthesis
Cyagr_2247	PWY-6936	seleno-amino acid biosynthesis
Cyagr_2247	PWY-7274	D-cycloserine biosynthesis
Cyagr_2254	PWY-3821	galactose degradation III
Cyagr_2254	PWY-6317	galactose degradation I (Leloir pathway)
Cyagr_2254	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Cyagr_2254	PWY-6527	stachyose degradation
Cyagr_2254	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Cyagr_2254	PWY-7344	UDP-D-galactose biosynthesis
Cyagr_2274	PWY-3221	dTDP-L-rhamnose biosynthesis II
Cyagr_2274	PWY-6808	dTDP-D-forosamine biosynthesis
Cyagr_2274	PWY-6942	dTDP-D-desosamine biosynthesis
Cyagr_2274	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Cyagr_2274	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Cyagr_2274	PWY-6974	dTDP-L-olivose biosynthesis
Cyagr_2274	PWY-6976	dTDP-L-mycarose biosynthesis
Cyagr_2274	PWY-7104	dTDP-L-megosamine biosynthesis
Cyagr_2274	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Cyagr_2274	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Cyagr_2274	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Cyagr_2274	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Cyagr_2274	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Cyagr_2274	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Cyagr_2274	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Cyagr_2274	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Cyagr_2275	PWY-6167	flavin biosynthesis II (archaea)
Cyagr_2275	PWY-6168	flavin biosynthesis III (fungi)
Cyagr_2280	PWY-2941	L-lysine biosynthesis II
Cyagr_2280	PWY-2942	L-lysine biosynthesis III
Cyagr_2280	PWY-5097	L-lysine biosynthesis VI
Cyagr_2280	PWY-6559	spermidine biosynthesis II
Cyagr_2280	PWY-6562	norspermidine biosynthesis
Cyagr_2280	PWY-7153	grixazone biosynthesis
Cyagr_2291	PWY-2941	L-lysine biosynthesis II
Cyagr_2291	PWY-2942	L-lysine biosynthesis III
Cyagr_2291	PWY-5097	L-lysine biosynthesis VI
Cyagr_2292	PWY-2941	L-lysine biosynthesis II
Cyagr_2292	PWY-2942	L-lysine biosynthesis III
Cyagr_2292	PWY-5097	L-lysine biosynthesis VI
Cyagr_2292	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cyagr_2292	PWY-6559	spermidine biosynthesis II
Cyagr_2292	PWY-6562	norspermidine biosynthesis
Cyagr_2292	PWY-7153	grixazone biosynthesis
Cyagr_2292	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cyagr_2305	PWY-6891	thiazole biosynthesis II (Bacillus)
Cyagr_2305	PWY-6892	thiazole biosynthesis I (E. coli)
Cyagr_2312	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cyagr_2313	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cyagr_2314	PWY-6832	2-aminoethylphosphonate degradation II
Cyagr_2331	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Cyagr_2331	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Cyagr_2331	PWY-6896	thiamin salvage I
Cyagr_2331	PWY-6897	thiamin salvage II
Cyagr_2332	PWY-1042	glycolysis IV (plant cytosol)
Cyagr_2332	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cyagr_2332	PWY-6901	superpathway of glucose and xylose degradation
Cyagr_2332	PWY-7003	glycerol degradation to butanol
Cyagr_2333	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cyagr_2333	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cyagr_2334	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cyagr_2334	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cyagr_2346	PWY-4983	L-citrulline-nitric oxide cycle
Cyagr_2346	PWY-4984	urea cycle
Cyagr_2346	PWY-5	canavanine biosynthesis
Cyagr_2346	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cyagr_2346	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cyagr_2386	PWY-6745	phytochelatins biosynthesis
Cyagr_2388	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cyagr_2388	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cyagr_2388	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cyagr_2388	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cyagr_2389	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cyagr_2389	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cyagr_2389	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cyagr_2397	PWY-5941	glycogen degradation II (eukaryotic)
Cyagr_2397	PWY-6724	starch degradation II
Cyagr_2397	PWY-6737	starch degradation V
Cyagr_2397	PWY-7238	sucrose biosynthesis II
Cyagr_2398	PWY-4321	L-glutamate degradation IV
Cyagr_2407	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cyagr_2407	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cyagr_2407	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cyagr_2410	PWY-4983	L-citrulline-nitric oxide cycle
Cyagr_2410	PWY-4984	urea cycle
Cyagr_2410	PWY-5	canavanine biosynthesis
Cyagr_2410	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cyagr_2410	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Cyagr_2414	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cyagr_2418	PWY-2201	folate transformations I
Cyagr_2418	PWY-5497	purine nucleobases degradation II (anaerobic)
Cyagr_2426	PWY-5747	2-methylcitrate cycle II
Cyagr_2427	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Cyagr_2427	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Cyagr_2427	PWY-6164	3-dehydroquinate biosynthesis I
Cyagr_2438	PWY-3781	aerobic respiration I (cytochrome c)
Cyagr_2438	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cyagr_2438	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cyagr_2438	PWY-5690	TCA cycle II (plants and fungi)
Cyagr_2438	PWY-6728	methylaspartate cycle
Cyagr_2438	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cyagr_2438	PWY-7254	TCA cycle VII (acetate-producers)
Cyagr_2438	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cyagr_2440	PWY-3781	aerobic respiration I (cytochrome c)
Cyagr_2440	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Cyagr_2440	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Cyagr_2440	PWY-5690	TCA cycle II (plants and fungi)
Cyagr_2440	PWY-6728	methylaspartate cycle
Cyagr_2440	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Cyagr_2440	PWY-7254	TCA cycle VII (acetate-producers)
Cyagr_2440	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cyagr_2441	PWY-5482	pyruvate fermentation to acetate II
Cyagr_2441	PWY-5485	pyruvate fermentation to acetate IV
Cyagr_2441	PWY-5497	purine nucleobases degradation II (anaerobic)
Cyagr_2450	PWY-6683	sulfate reduction III (assimilatory)
Cyagr_2461	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cyagr_2462	PWY-5194	siroheme biosynthesis
Cyagr_2462	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cyagr_2464	PWY-6823	molybdenum cofactor biosynthesis
Cyagr_2465	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cyagr_2465	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cyagr_2466	PWY-6823	molybdenum cofactor biosynthesis
Cyagr_2518	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Cyagr_2518	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cyagr_2518	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Cyagr_2518	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Cyagr_2520	PWY-40	putrescine biosynthesis I
Cyagr_2520	PWY-6305	putrescine biosynthesis IV
Cyagr_2528	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Cyagr_2528	PWY-7177	UTP and CTP dephosphorylation II
Cyagr_2528	PWY-7185	UTP and CTP dephosphorylation I
Cyagr_2529	PWY-6703	preQ<sub>0</sub> biosynthesis
Cyagr_2531	PWY-6703	preQ<sub>0</sub> biosynthesis
Cyagr_2532	PWY-5958	acridone alkaloid biosynthesis
Cyagr_2532	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Cyagr_2532	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Cyagr_2555	PWY-5704	urea degradation II
Cyagr_2556	PWY-5704	urea degradation II
Cyagr_2557	PWY-5704	urea degradation II
Cyagr_2564	PWY-5941	glycogen degradation II (eukaryotic)
Cyagr_2564	PWY-622	starch biosynthesis
Cyagr_2564	PWY-6731	starch degradation III
Cyagr_2564	PWY-6737	starch degradation V
Cyagr_2564	PWY-7238	sucrose biosynthesis II
Cyagr_2571	PWY-6823	molybdenum cofactor biosynthesis
Cyagr_2587	PWY-5350	thiosulfate disproportionation III (rhodanese)
Cyagr_2591	PWY-7158	L-phenylalanine degradation V
Cyagr_2603	PWY-7158	L-phenylalanine degradation V
Cyagr_2620	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Cyagr_2620	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cyagr_2620	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Cyagr_2691	PWY-1001	cellulose biosynthesis
Cyagr_2693	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Cyagr_2737	PWY-40	putrescine biosynthesis I
Cyagr_2737	PWY-43	putrescine biosynthesis II
Cyagr_2737	PWY-6305	putrescine biosynthesis IV
Cyagr_2737	PWY-6834	spermidine biosynthesis III
Cyagr_2738	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cyagr_2738	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Cyagr_2738	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cyagr_2738	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cyagr_2738	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Cyagr_2738	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cyagr_2738	PWY-7205	CMP phosphorylation
Cyagr_2738	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cyagr_2738	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cyagr_2738	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cyagr_2738	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cyagr_2738	PWY-7224	purine deoxyribonucleosides salvage
Cyagr_2738	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cyagr_2738	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Cyagr_2744	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Cyagr_2748	PWY-1042	glycolysis IV (plant cytosol)
Cyagr_2748	PWY-1622	formaldehyde assimilation I (serine pathway)
Cyagr_2748	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cyagr_2748	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cyagr_2748	PWY-5723	Rubisco shunt
Cyagr_2748	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cyagr_2748	PWY-6886	1-butanol autotrophic biosynthesis
Cyagr_2748	PWY-6901	superpathway of glucose and xylose degradation
Cyagr_2748	PWY-7003	glycerol degradation to butanol
Cyagr_2748	PWY-7124	ethylene biosynthesis V (engineered)
Cyagr_2748	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Cyagr_2749	PWY-5386	methylglyoxal degradation I
Cyagr_2760	PWY-5686	UMP biosynthesis
Cyagr_2770	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Cyagr_2770	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Cyagr_2770	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Cyagr_2770	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Cyagr_2775	PWY-1042	glycolysis IV (plant cytosol)
Cyagr_2775	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cyagr_2775	PWY-6886	1-butanol autotrophic biosynthesis
Cyagr_2775	PWY-6901	superpathway of glucose and xylose degradation
Cyagr_2775	PWY-7003	glycerol degradation to butanol
Cyagr_2788	PWY-3781	aerobic respiration I (cytochrome c)
Cyagr_2788	PWY-4521	arsenite oxidation I (respiratory)
Cyagr_2788	PWY-6692	Fe(II) oxidation
Cyagr_2788	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cyagr_2801	PWY-5941	glycogen degradation II (eukaryotic)
Cyagr_2801	PWY-6724	starch degradation II
Cyagr_2801	PWY-6737	starch degradation V
Cyagr_2801	PWY-7238	sucrose biosynthesis II
Cyagr_2809	PWY-5316	nicotine biosynthesis
Cyagr_2809	PWY-5381	pyridine nucleotide cycling (plants)
Cyagr_2809	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Cyagr_2809	PWY-7342	superpathway of nicotine biosynthesis
Cyagr_2832	PWY-5958	acridone alkaloid biosynthesis
Cyagr_2832	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Cyagr_2832	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Cyagr_2833	PWY-7039	phosphatidate metabolism, as a signaling molecule
Cyagr_2841	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Cyagr_2841	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Cyagr_2841	PWY-5901	2,3-dihydroxybenzoate biosynthesis
Cyagr_2841	PWY-6406	salicylate biosynthesis I
Cyagr_2847	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Cyagr_2847	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Cyagr_2855	PWY-6823	molybdenum cofactor biosynthesis
Cyagr_2855	PWY-6891	thiazole biosynthesis II (Bacillus)
Cyagr_2855	PWY-6892	thiazole biosynthesis I (E. coli)
Cyagr_2855	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Cyagr_2859	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cyagr_2859	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cyagr_2861	PWY-6123	inosine-5'-phosphate biosynthesis I
Cyagr_2861	PWY-7234	inosine-5'-phosphate biosynthesis III
Cyagr_2863	PWY-5340	sulfate activation for sulfonation
Cyagr_2877	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Cyagr_2877	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Cyagr_2877	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Cyagr_2880	PWY-2201	folate transformations I
Cyagr_2880	PWY-3841	folate transformations II
Cyagr_2912	PWY-4381	fatty acid biosynthesis initiation I
Cyagr_2912	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Cyagr_2912	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cyagr_2913	PWY-4381	fatty acid biosynthesis initiation I
Cyagr_2919	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Cyagr_2919	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Cyagr_2919	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Cyagr_2919	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Cyagr_2919	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Cyagr_2919	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Cyagr_2925	PWY-101	photosynthesis light reactions
Cyagr_2925	PWY-6785	hydrogen production VIII
Cyagr_2945	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Cyagr_2945	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Cyagr_2952	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cyagr_2963	PWY-5316	nicotine biosynthesis
Cyagr_2963	PWY-7342	superpathway of nicotine biosynthesis
Cyagr_2976	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
Cyagr_2987	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Cyagr_2987	PWY-6416	quinate degradation II
Cyagr_2987	PWY-6707	gallate biosynthesis
Cyagr_2989	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
Cyagr_2989	PWY-5389	3-methylthiopropanoate biosynthesis
Cyagr_2997	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Cyagr_2999	PWY-3341	L-proline biosynthesis III
Cyagr_2999	PWY-4981	L-proline biosynthesis II (from arginine)
Cyagr_2999	PWY-6344	L-ornithine degradation II (Stickland reaction)
Cyagr_3025	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cyagr_3025	PWY-5723	Rubisco shunt
Cyagr_3048	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Cyagr_3064	PWY-6123	inosine-5'-phosphate biosynthesis I
Cyagr_3064	PWY-6124	inosine-5'-phosphate biosynthesis II
Cyagr_3064	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cyagr_3064	PWY-7234	inosine-5'-phosphate biosynthesis III
Cyagr_3068	PWY-6700	queuosine biosynthesis
Cyagr_3084	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cyagr_3102	PWY-5686	UMP biosynthesis
Cyagr_3109	PWY-5988	wound-induced proteolysis I
Cyagr_3109	PWY-6018	seed germination protein turnover
Cyagr_3115	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Cyagr_3115	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Cyagr_3115	PWY-5989	stearate biosynthesis II (bacteria and plants)
Cyagr_3115	PWY-5994	palmitate biosynthesis I (animals and fungi)
Cyagr_3115	PWY-6113	superpathway of mycolate biosynthesis
Cyagr_3115	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Cyagr_3115	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cyagr_3115	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cyagr_3115	PWYG-321	mycolate biosynthesis
Cyagr_3118	PWY-6123	inosine-5'-phosphate biosynthesis I
Cyagr_3118	PWY-6124	inosine-5'-phosphate biosynthesis II
Cyagr_3118	PWY-7234	inosine-5'-phosphate biosynthesis III
Cyagr_3120	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Cyagr_3120	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Cyagr_3120	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Cyagr_3130	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Cyagr_3130	PWY-6855	chitin degradation I (archaea)
Cyagr_3130	PWY-6906	chitin derivatives degradation
Cyagr_3141	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Cyagr_3141	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Cyagr_3149	PWY-7183	pyrimidine nucleobases salvage I
Cyagr_3150	PWY-1042	glycolysis IV (plant cytosol)
Cyagr_3150	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Cyagr_3150	PWY-5484	glycolysis II (from fructose 6-phosphate)
Cyagr_3150	PWY-5723	Rubisco shunt
Cyagr_3150	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Cyagr_3150	PWY-6886	1-butanol autotrophic biosynthesis
Cyagr_3150	PWY-6901	superpathway of glucose and xylose degradation
Cyagr_3150	PWY-7003	glycerol degradation to butanol
Cyagr_3150	PWY-7124	ethylene biosynthesis V (engineered)
Cyagr_3150	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Cyagr_3156	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cyagr_3165	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Cyagr_3165	PWY-5723	Rubisco shunt
Cyagr_3186	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Cyagr_3186	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Cyagr_3197	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Cyagr_3197	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Cyagr_3204	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Cyagr_3204	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Cyagr_3204	PWY-6269	adenosylcobalamin salvage from cobinamide II
Cyagr_3208	PWY-6167	flavin biosynthesis II (archaea)
Cyagr_3208	PWY-6168	flavin biosynthesis III (fungi)
Cyagr_3208	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Cyagr_3212	PWY-3781	aerobic respiration I (cytochrome c)
Cyagr_3212	PWY-4521	arsenite oxidation I (respiratory)
Cyagr_3212	PWY-6692	Fe(II) oxidation
Cyagr_3212	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Cyagr_3231	PWY-5367	petroselinate biosynthesis
Cyagr_3231	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Cyagr_3231	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Cyagr_3231	PWY-5989	stearate biosynthesis II (bacteria and plants)
Cyagr_3231	PWY-5994	palmitate biosynthesis I (animals and fungi)
Cyagr_3231	PWY-6113	superpathway of mycolate biosynthesis
Cyagr_3231	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Cyagr_3231	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Cyagr_3231	PWY-6951	Cyagr_3231|Cyagr_3231|YP_007047650.1|GeneID:14057537
Cyagr_3231	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Cyagr_3231	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Cyagr_3231	PWYG-321	mycolate biosynthesis
Cyagr_3234	PWY-7560	methylerythritol phosphate pathway II
Cyagr_3243	PWY-5194	siroheme biosynthesis
Cyagr_3243	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Cyagr_3246	PWY-101	photosynthesis light reactions
Cyagr_3246	PWY-6785	hydrogen production VIII
Cyagr_3250	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Cyagr_3256	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
Cyagr_3282	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Cyagr_3282	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Cyagr_3298	PWY-7254	TCA cycle VII (acetate-producers)
Cyagr_3404	PWY-5382	hydrogen oxidation II (aerobic, NAD)
Cyagr_3404	PWY-6758	hydrogen production II
Cyagr_3422	PWY-5686	UMP biosynthesis
Cyagr_3434	PWY-5386	methylglyoxal degradation I
