   Dhaf_0001    1513 ..    1544 +    -6  -4.81685   AAACGAGTTTGTTAA      CATGTGGATAAATT CAAG GATTAATTCACATG       TTTTTACTCATTCCT  78 96
   Dhaf_0002 NONE
   Dhaf_0003    3907 ..    3917 +    -4  -4.02139   GCAGATTGGGAGGAT                 TGAA TAA TTCA                 TGTTTTTACATTTAG  59 19
   Dhaf_0004    4188 ..    4217 +  -6.5  -4.08221   AGGCAGGATCAAGAA       GAAACCTCTCT AAGTCTGC AGTGAGGTTTC        TTTGATTGTGTTAGC  69 39
   Dhaf_0005 NONE
   Dhaf_0006    8818 ..    8836 +    -3  -2.78816   CTCACTGTGCAGAGA             GTCAGTAC TCT GTACCGCC             TATGGTAAAGAGTAC  43 83
   Dhaf_0007 NONE
   Dhaf_0008   10949 ..   10977 +  -8.2  -5.06451   TTATGGAGATCTGAA        GTTCGTAGTTCG ATACG CGAGTTACGGAC        TTTTTTACAATAGTA 100 231
   Dhaf_0009   11715 ..   11738 + -10.4  -4.87291   CCATTGTAAATGAGA          TCCGCATTAG TAAG TTAATGCGGA           TTTTTAATTGGAATA 100 184
   Dhaf_0012   14343 ..   14379 + -15.4  -4.37886   GTCGATATAAGAAAA    GAGGAGGATAACAC AAGGTATCA GTGTTATCCTCCTC    TTTTCTGGCAGGTAA 100 99
   Dhaf_0014   15219 ..   15249 + -21.4   -3.6692   ACTTCAATAAGCTAT       TAAATGGTCCGTGC TCG GCACGGACCATTTA       TCTTTTCCCATCAAA 100 49
   Dhaf_0015 NONE
   Dhaf_0016   15854 ..   15886 + -11.4  -4.58424   TTGGAATGCGAACGA      TAGAAAAGCTTGGC TATAT GCCGGGCTTTTCTG      TTTTATATAGTAATC 100 71
   Dhaf_0017   17324 ..   17337 +  -3.9  -4.68645   CTGGGGCTCAACGAA               CTATA ATCG TATAG                TTTTCGTTTTGCATC  67 68
   Dhaf_0019 NONE
   Dhaf_0020 NONE
   Dhaf_0021   21478 ..   21497 +  -5.7   -4.4009   AATAGGCCTGCGGTC            TATCGGC GGCGGA GCCGATG             TTTTCTAAAGTCACC  70 151
   Dhaf_0022   22009 ..   22028 +    -5  -3.21218   GGTTTTTAGGATTAA            TTGGTTGC GATA GCAACGAA             TTAATCCTGAACGCT  51 185
   Dhaf_0023 NONE
   Dhaf_0024   23188 ..   23210 +  -2.7  -4.96996   TAATAAAACTACAAT           TCATTTTCC GGAGG GGAGGGTGA           TTTATTTTCTTTGCC  70 257
   Dhaf_0025 NONE
   Dhaf_0026 NONE
   Dhaf_0027   26971 ..   26982 +  -4.4  -3.38046   TCGTTTTGATTAAAA                GCTT ATCA AAGC                 TCTTTGCGGTAAGGA  50 161
   Dhaf_0030 NONE
   Dhaf_0031 NONE
   Dhaf_0032 NONE
   Dhaf_0033   32261 ..   32287 +  -2.3  -6.23545   GCTGTCAAGAAAAGA        GGGATATC-CCT GTGA AGGAGGTATCCA         TTTTTTTTGTTTCAG  93 41
   Dhaf_0034   32653 ..   32671 +  -5.3  -6.09196   ATACAGGATAGAAAG            CCC-TTCC GTTT GGAAAGGG             TTTTTTTGTTTTGGG 100 266
   Dhaf_0035   34556 ..   34606 + -12.8  -3.64703   AACGCTCTATCAGAA CAGGTGCGTCTGAAACGCC--TGC CCGAA GCATTGGCGTTTTGAACGCACCTG TTTGAATGGGGCCGC 100 55
   Dhaf_0036 NONE
   Dhaf_0037 NONE
   Dhaf_0038 NONE
   Dhaf_0039   37931 ..   37957 + -13.8  -3.86822   GTAATCTTTGGACAA         GAGGATGGCC TGAAATT GGCCATCCTC         TTTATGCCGCACTTA 100 37
   Dhaf_0042 NONE
   Dhaf_0043 NONE
   Dhaf_0044   42711 ..   42721 +  -2.6  -2.51738   TTAAAATGTAGTCGG                 TATA TTC TATA                 ATTAATGCAGTTATT  41 30
   Dhaf_0045   43203 ..   43214 +  -5.8  -3.03473   TAATGCAGCTTCTCA                CCTG ATTC CAGG                 CTTATTTCCTGTGTA  54 41
   Dhaf_0046 NONE
   Dhaf_0047 NONE
   Dhaf_0048 NONE
   Dhaf_0049   47228 ..   47260 +  -4.2  -5.64321   ATAAAATGCAATTCA     GCCAA-GTTGGATCC GTTC GCATTCGACTTTGGC      TTTTTATTTTGTTAT  90 220
   Dhaf_0050 NONE
   Dhaf_0051 NONE
        recR NONE
   Dhaf_0053   50942 ..   50986 +  -5.1  -4.77719   ACATAAGCAAGGTTT GGGTGGAAAAAGAACTTCCTT AAA AAAGAATCTCTTTTTTAACCC TTTTATTAAATTTTC  75 324
   Dhaf_0054   54576 ..   54595 +   -15  -4.58663   TGGATTGCAGTAAGA            GAGCGGGC TTTG GCCCGCTC             TTTTTGCACGGTCAT 100 50
   Dhaf_0055 NONE
   Dhaf_0056   56660 ..   56700 + -12.8  -4.55118   TTAAATCAAAATTGG  GGAGATAGAATCTTATCT ATTTA GGAAAGGATTCTATCTCC  TTTTCTATAGGCTTA 100 59
   Dhaf_0057 NONE
   Dhaf_0058 NONE
   Dhaf_0059   60735 ..   60745 +  -2.6  -2.76242   GCTTCAATGGAAATA                 TTAT GAT ATAA                 TGATGTGTATTACCT  42 43
   Dhaf_0060 NONE
   Dhaf_0061 NONE
   Dhaf_0062 NONE
   Dhaf_0063 NONE
   Dhaf_0064   65149 ..   65165 +    -8  -3.33412   GCCTAAAAAGAGAAA              GAAGGC TTTAC GCCTTC              TATTATGTAGAATTA  66 85
   Dhaf_0066 NONE
   Dhaf_0067 NONE
   Dhaf_0068   69169 ..   69204 +   -17   -4.7908   AGGCCGGATATCATG    GCACAAATCCTGGGGG AATG TCTCCGGGATTTGTGC     TTTCTTTATGTTTTT 100 67
   Dhaf_0069 NONE
   Dhaf_0070   71560 ..   71592 + -10.7  -5.03994   TAAGCAATCAAACCA      TGAGGTTCTTCGA AATAAAG TCGAAGGGCCTCA      TTTTTCTATATCCAG 100 129
   Dhaf_0071   72461 ..   72477 +  -3.7  -3.86346   AAAGAAAAGAAATCT              TCAGCGA TTT TTGTTGA              TTTCTAAAGGGATCC  56 102
   Dhaf_0072   73792 ..   73825 + -19.1  -5.07567   GAAAGAAGACACACG     GTAAGGAGCAGGAGA AATC TCTTCTGCTCCTTAC      TTTTTTGCAGTGTGC 100 57
   Dhaf_0073 NONE
   Dhaf_0074   75346 ..   75397 +  -4.6   -4.4078   GTGGCAAAAGAAGAA CAGCCATGACATGGGGAGTCTATC AGAGTG GATAG-CTTAACA-GTCGTGGCTG TTTTCATTGCGACCC  66 59
   Dhaf_0075 NONE
   Dhaf_0076   76267 ..   76292 +  -8.4  -4.26871   TATGTTATACAAAAA         GCAGCAAA-CC GCTAA GGATTTGCTGC         TTTATTACTAAGTTC  82 41
   Dhaf_0078   80140 ..   80178 +   -25  -3.55444   TAAAGTCCTAGGAAA   TAGTATAAAGGTCACAGC TAA GCTGTGACCTTTATACTA   TTTAGAAAATAAAAA 100 54
   Dhaf_0079   82184 ..   82216 + -10.6  -4.07678   AATCCATAAGGAATG     GCGGCTGAC-CCATG TAAC CATGGGGTAGGCCGC      TTTGCTCTTTTCCGC  85 99
   Dhaf_0082   84740 ..   84778 + -15.5  -4.57569   AGTCCTTATTGATGA  TG-ATGAGCGCCTGCG CAGATGAA CGCAGGCGCTCATGCA   TTTTTAGCAGCCTAC 100 29
   Dhaf_0084 NONE
   Dhaf_0085   89038 ..   89050 +  -2.7  -4.34263   AACAATATCTTAGGA                TAAAC CGT GTTTG                TTTATATTATTCCGA  59 187
   Dhaf_0086   90041 ..   90071 + -11.1  -3.70926   CGATGACATTCCAAA       CGGCCACTAGGGG CATCT CCCTCAGTGGCTG       TCTTATTTATGTTAT  84 47
   Dhaf_0087 NONE
   Dhaf_0088 NONE
   Dhaf_0089   92725 ..   92739 +  -5.6  -4.15066   AGTATGGATTTAAGG               TTCGGC GAA GCCGGG               TTTCCTTTATCGCTC  68 98
   Dhaf_0090   93167 ..   93187 + -15.5  -4.30844   TAAGACAAGCATTAA            GAGACCCTG TTC CAGGGTCTC            TTTTGCTCATGAGAT 100 38
        glmU NONE
   Dhaf_0092   95735 ..   95767 + -12.1  -5.10497   TTTTAGACAAAAAAA      TCAGAAGTGAGGGAT GAG GTCCCTTCCTTCTGA      TTTTTTGCGTGGATT 100 101
   Dhaf_0094 NONE
   Dhaf_0095 NONE
   Dhaf_0096   99292 ..   99305 +  -2.5  -3.59979   AAGAAAAAATTTTAT               TATTT GGAT AAATA                TTTCCAATAAAAAAA  50 170
   Dhaf_0097   99714 ..   99729 +  -2.6   -3.2218   TGTGCTTCCCATGGG              CTTTTG GTCA TAAAAG               TTGATGAATCTTCAG  44 13
   Dhaf_0098 NONE
   Dhaf_0099 NONE
   Dhaf_0100  103795 ..  103825 +  -4.6  -5.48825   AAAATAATAGGAAAA       TCCCTCTGCGGTAA AAG TGAAAGCAGGGGGA       TTTTTTTAGATGGTA  87 53
   Dhaf_0102 NONE
   Dhaf_0103 NONE
   Dhaf_0104  107495 ..  107522 + -11.4  -4.27774   ATAGAGATAATAAAA        GTGCGTTTCC GTAGCTCA GGAAACGCAC         TTTATCATTTTTGGT 100 83
   Dhaf_0105  110556 ..  110585 + -10.1  -4.96848   AGAAGTGTGACCCGA       AGAGGAAGACCAA AGAT TTGGTTTTCCTCC        TTTTTATGTCCCAGC 100 39
   Dhaf_0106 NONE
   Dhaf_0107 NONE
   Dhaf_0108  112039 ..  112065 +   -16  -3.90358   TACCCAATTTAAAAA         GGAAAGTCGTTC TCT GGACGACTTTCC         TTTCATGTATGATGT 100 52
   Dhaf_0110 NONE
   Dhaf_0111 NONE
   Dhaf_0112 NONE
   Dhaf_0113  120824 ..  120861 + -17.3  -3.54653   AACTGCAATTATTAT   CAAAAGAAGTTGGTTGC TCTT GCAATCGACTTCTTTTG    TTCTATGATAAAGGT 100 62
   Dhaf_0114 NONE
   Dhaf_0115  122783 ..  122817 + -20.1  -3.03771   ACGTTGGTAGGCTTT     ACGAAGCTGCCGGCA AAATC TGCCGGCAGCTTCGC     TGTTCAAGCCTGTAA 100 31
   Dhaf_0119 NONE
   Dhaf_0120  126430 ..  126478 + -22.1  -3.06315   TCTGTATTTTTACAA GTAAAAGCTCGTGTCAGGGAACT TGC AGTTCTTTGACACGAGCTTTTAA TATTAGGAATCTTCC 100 47
   Dhaf_0121 NONE
   Dhaf_0122 NONE
   Dhaf_0123  128394 ..  128427 + -16.1   -4.4078   CCTGTAAAAAAGAGG     GCCTCGCCGACTGTT TTTG AATACTCGGCGAGGC      TTTTGATTAAGCGAA 100 67
   Dhaf_0125  131371 ..  131407 + -12.4  -5.00884   CTGAAGTGAAGAAAA   GCGCCCTTATCTC-CCG TGTA TGGTGAGATAAGGGCAC    TTTTTTAGGGGGGGT 100 47
   Dhaf_0127 NONE
   Dhaf_0128 NONE
   Dhaf_0129  136191 ..  136223 + -12.8  -4.78107   GCCATGAATAAGCCG      GCACCTCTCAGG CAAACCTAT CCTGGGAGGTGC      TTTTTCATGCTGGTA 100 56
   Dhaf_0130  136539 ..  136569 +  -2.4  -4.68724   TTAAAACTTAGGCGA       CAATGGGGGTCCTC TTG GCGGATGTCCATGG       TTTTGTGTTGCCTGA  63 158
   Dhaf_0131 NONE
   Dhaf_0132  141185 ..  141219 + -15.4  -4.67353   TTGAAAATCAATGAA     GATATACTTAGAAAGA GAT TCTTTTTAAGTATATC     TTTTTCGATCCCTAA 100 90
   Dhaf_0133  142003 ..  142026 + -13.2    -5.252   ATCCTTTAAATGAGA          TTGGAGCGGC GGCA GCCGCTTCAA           TTTTTTATGAGCATC 100 41
   Dhaf_0134 NONE
   Dhaf_0135  143946 ..  143965 +   -10  -5.03994   CTTTTGAGAAATAAA            TCAGGTCC GTCA GGGCCTGA             TTTTTCTCTATAGAC 100 43
   Dhaf_0136  144264 ..  144300 +  -2.7  -3.47573   GCTGAAGGATGAGAA    GCGCGGGGGGCAAGAGG AGA TCTAAGGCCGCTCGTGC    TTCTCATGTCGCTCA  48 1
   Dhaf_0138  147102 ..  147122 +  -3.1  -2.72235   CCTTGATTTGGGTCG            TTGCAGCCG GTG CGGCAGTGG            GCTTTGTTTTTGATT  42 115
   Dhaf_0139  147648 ..  147659 +  -2.2   -3.4799   ACAATTTGTAGTGTC                TCTG TCCT CAGG                 TTGTCCATATTTTGT  47 96
   Dhaf_0140 NONE
   Dhaf_0141 NONE
   Dhaf_0142  148854 ..  148871 + -11.3  -4.61231   TTCTCTAAGATAAAT             GACCGCT GCAA AGCGGTC              TTTTTAGCACTCTCA 100 50
   Dhaf_0143 NONE
   Dhaf_0144  152713 ..  152727 +  -2.2   -3.6393   GGCTTTTTCGTGGTA               TAATAT GTA ATATTG               TCTTTGTATGATGGG  49 104
   Dhaf_0145 NONE
         ndk  155233 ..  155252 + -11.4  -4.57569   GAGTAAATTGAAAAA            GGGCACCG ACTT CGGTGTCC             TTTTTCAAAAAATAA 100 47
   Dhaf_0147 NONE
   Dhaf_0148  156720 ..  156732 +  -3.4  -4.67635   ATCCTGGCATTTTTT                TCTC TAAAC GAGA                TTTTATAATTTTCAA  65 45
   Dhaf_0149  158572 ..  158596 + -15.1  -4.32402   AGGTCGTCTGGCTTT          GCCCCAGAAAG AAA TTTTCTGGGGC          TTATTTTCGTTAGGA 100 44
   Dhaf_0150 NONE
   Dhaf_0151 NONE
   Dhaf_0152 NONE
   Dhaf_0153  161505 ..  161527 +  -6.3   -5.1101   GCAGAGCATAGCAGA          GCACCTTCAC GTTT GTGG-GGTGC           TTTTTTACATGATCA  87 183
   Dhaf_0154 NONE
        panC NONE
   Dhaf_0156  163679 ..  163697 +  -7.5  -3.34192   GATACACGGGCAGCA             GTCTTAG CATCC CTAAGAC             TTGGTTAAAAAGCTT  64 19
   Dhaf_0157 NONE
   Dhaf_0158 NONE
   Dhaf_0159 NONE
   Dhaf_0160 NONE
   Dhaf_0161  169226 ..  169245 +  -2.1  -3.64703   AGCGGGGTTTACATA            TTATGGC AGTAAA GCCCTAA             TTTAAATGAAGCGCG  49 146
   Dhaf_0162  169803 ..  169837 + -14.4  -3.57263   ACTCAGGTATCCTGA     CAAAAGGTCGGCAAGA AAT TCTTGCCGACACTTTG     TTTAACGATGAAAGT 100 54
   Dhaf_0163  171468 ..  171499 +  -7.4  -4.24422   GCTTGGTCTACACTA      GGGAGACGAATGT ATAACGA GCAT-CGTCTCCC      TTTCCTTTATTCTGC  75 60
   Dhaf_0165 NONE
   Dhaf_0166  182492 ..  182505 +  -2.5  -2.86689   TTGATCTTCTCGGGG               TATTT ATTT AAATA                ATTTAATAAAATTTT  42 11
   Dhaf_0167 NONE
   Dhaf_0168 NONE
   Dhaf_0169  184114 ..  184150 +  -6.7  -4.73448   ATTTGAAAAGAAAAA   GCCCTAAG-GCAGCAT ATTAAA ATGCTTTGCTTAGGGC    TTTTTAGATCTCTGT  79 78
   Dhaf_0171  187992 ..  188027 + -14.8  -4.00868   CAGGCAAAGTTAAAA    CCCTCAGCAACTGTTC ATAG GAACGGATGTTGAGGG     TTTCCTTGTGGATGC 100 45
   Dhaf_0172 NONE
   Dhaf_0173  191526 ..  191551 + -10.5  -4.42788   AAAGAATTATGATGA         CCGTCACCTCAT AAT ATG-GGTGGCGG         TTTTCTCCCATTGAA 100 63
   Dhaf_0175  193429 ..  193469 + -16.5  -4.19817   TCCTGGAGATTCAAA GAAAGCCGCTCCATAATC CCAAGC GATTAT-GAGCGGCTTTC  TTTTAAGTCAATCAC 100 56
   Dhaf_0176  194080 ..  194098 +  -4.6  -5.42862   GCATATAAATGCTTA             GGACAA GCATAAG TTGTCC             TTTTTTTAGACATCT  87 76
   Dhaf_0177  195520 ..  195545 +  -9.8  -4.20354   CGGCAATCAAGATAA         GGGGATCTCT GAGCAG AGAGATCTCC          TTTTGCCGTTACATT  88 92
   Dhaf_0178  196814 ..  196825 +  -2.2  -3.09516   CTGAAAATCCTCGTG                TCGG CGGT TCGA                 TTCCGTCCTAAGGCA  43 317
   Dhaf_0179 NONE
   Dhaf_0180  199487 ..  199516 +  -6.5  -4.55128   GAGCATTAACTCAAG       CCGGGTG-ATACTT GAC AAGTAAGCATCCGG       TTTTGGTTTACCGCT  74 32
   Dhaf_0181 NONE
   Dhaf_0182  202009 ..  202041 +  -4.3   -5.1764   CCGGTGAGGACTTAA     GACAAGGGTGTGAGC TGATT GCT-G-ACCCTTGTC     TTTTTATATTATCTG  78 45
   Dhaf_0183  202650 ..  202699 + -15.1  -4.14392   GTCAAAGGAAAAATA GGGAGTGTCGCC-AAACGGCTTTT TGA AAGAGCTGAGTCGGCGGCACTCCC TTTGTATGTCCGTCT 100 40
   Dhaf_0184  204021 ..  204047 + -11.6  -5.59502   AACCACGGGAATAAA         GTTCTCGTCCCA TAT TGGGATGAGGGC         TTTTTTAGTTTTTTC 100 281
        thrS  206035 ..  206071 +   -14  -4.42386   AAGATAAGACTCAGG    CAAAAGGATTCAGACT TATGT GGTTTGAATCCTTTTG    TTTTGTCAATGGCCA 100 39
   Dhaf_0186  207614 ..  207628 +  -2.8  -4.07466   GTGAGGAAGACCAGG               GTGATC CTT GATCAG               TTCTTCTTCTGTAAT  56 328
   Dhaf_0189 NONE
   Dhaf_0190  213568 ..  213583 +  -4.6  -2.71011   TATTCGGGTCATATT              GGGCCA AGTA TGGCCG               TAGTTAAGGAGGCCT  48 3
   Dhaf_0191 NONE
   Dhaf_0192  215634 ..  215649 +  -3.2  -2.53382   AAAAGAGACTCGCAT              CCGTTC GGGA GAACGA               TACATTGAGGGTCAT  42 61
   Dhaf_0193 NONE
   Dhaf_0194  218188 ..  218215 +  -7.8  -5.03314   AAGGTATCCGCCCCC        GGCTGTTGATAG AATT TTGTCAACAGTC         TTTTTTGCACCTAAG  95 49
   Dhaf_0195 NONE
   Dhaf_0196 NONE
   Dhaf_0197 NONE
   Dhaf_0198  222941 ..  222956 +  -7.6   -3.0094   AATAGGACATCTTTA              TCGGAA GTGT TTCCGA               TCTCTATACCTAAAG  60 294
   Dhaf_0200 NONE
   Dhaf_0201 NONE
   Dhaf_0202 NONE
   Dhaf_0203 NONE
   Dhaf_0204 NONE
   Dhaf_0205 NONE
   Dhaf_0206 NONE
   Dhaf_0207  228133 ..  228147 +    -5  -5.14682   ATATTGCCTTGCATT               TTTGAC ACT GTCAGA               TTTTCTTTATTGTGG  80 21
   Dhaf_0208 NONE
   Dhaf_0209  230687 ..  230698 +  -3.6  -3.86346   CAAAAGGCCTATAAA                GCTC TCCA GGGC                 TTTATAGAAGAATCG  56 27
   Dhaf_0210 NONE
   Dhaf_0211 NONE
   Dhaf_0212 NONE
   Dhaf_0213 NONE
   Dhaf_0214  235259 ..  235284 +  -2.5  -4.03234   TGAGGTATCTTCGGG         TCCTGAGC-CGC TGT GCTTGCTCATGA         TTTGTATGGAAGACG  54 128
   Dhaf_0215 NONE
        rpmI  236104 ..  236119 +  -2.6  -4.16842   TGGCAGGGTCGGGGC              GCATTGT GAG ACAA-GC              TTTGTTCGGCATGAG  57 44
        rplT  236568 ..  236583 + -10.4  -4.66163   AAAGAATACATCAAA              GGGTGC TGAG GCACCC               TTTTTACATAGGGGT 100 39
   Dhaf_0218  237869 ..  237895 + -11.7  -5.71295   TACCGCGGGAGTTAT         TTCTCGTCCCT TTTAT AGGGATGAGAA         TTTTTGTTTTTATAT 100 467
        pheS NONE
        pheT NONE
   Dhaf_0221  241695 ..  241716 + -11.6  -4.67353   GAGATCAGAGAGAAA           GGGGACTG GCGCGA CAGTCCCC            TTTTTGGCTGGGTAG 100 42
   Dhaf_0222  242247 ..  242268 +  -5.9  -5.44119   TGGTACCTCATGAAA           GCGTAATTT TAAA GAGTTACGC            TTTTTTTGCCCTGAA  90 60
   Dhaf_0225  245487 ..  245497 +  -2.4  -2.54568   AAAAGTTAGCCAGTG                 AGGG CAT CCCG                 GCTTTTAATATTCAC  39 25
   Dhaf_0226  246487 ..  246505 +   -11  -4.34263   AAAAGTTCTTATTGA             CCCTCTAG TTG CTGGAGGG             TTTATATTATTGAGC 100 63
   Dhaf_0227  247721 ..  247749 +  -8.2  -3.19668   TCTGGAAAGAACCCA       GCCGCATTCTTCA GCAG TGAAGGG-GCGGC        TTAGCTTCAATAATA  67 6
   Dhaf_0228 NONE
   Dhaf_0229 NONE
   Dhaf_0230  253956 ..  253968 +  -2.7  -3.00215   TTTTCATGCCGGATA                TGTAT ATA ATGCA                TGTATATGAAAATTT  43 58
   Dhaf_0231  254259 ..  254283 + -14.4   -5.0133   AGAGCAAGAAGAGAA          GAAGAACCGG GAAGA CCGGTTCTTC          TTTTTTACCCAAATG 100 39
   Dhaf_0232  256297 ..  256313 +  -7.9    -3.551   ATTCAATAGAGAAGA              CAGGGGG ATA CCCCATG              TTGTGTGGCTTGAAG  68 54
   Dhaf_0233  258551 ..  258564 +  -3.1  -3.77553   TATTCGAAGAACGTA               CTTGT TCGT GCAAG                TTGTTAATGATATTA  53 80
   Dhaf_0234  259078 ..  259107 + -15.2  -5.28826   AAAGCCCATAAAAAA       GTCCGTGTGAAA ACCAAA TTTCACACGGAC        TTTTTTATGGGCTTT 100 112
   Dhaf_0237  265473 ..  265499 +  -9.5  -4.19506   ATTTTAGATAATTAA         CGGCAGCAT AGATTTATA ATGCTGCCG         TTTTCGACTTAAGGT  85 50
   Dhaf_0238 NONE
   Dhaf_0239 NONE
   Dhaf_0240  274148 ..  274161 +  -4.5  -3.23422   TCTTCCTTAATATTC               GCCTT ACGA AGGGC                TATGTTATGCTTGAT  51 49
   Dhaf_0241  274594 ..  274614 + -14.1  -4.77036   AATGATTTTAAAAAA            CACCTTGGA AGT TCCAAGGTG            TTTTTGATCGTGAGG 100 41
   Dhaf_0243  275911 ..  275931 +  -7.6  -4.58466   TATAATTGAAGTAAA            GGAAGGTT AAGAA AGCCTTCC            TTTTGTGCTTATACA  86 61
   Dhaf_0244  276844 ..  276871 +  -7.8  -2.71731   GGGATGGTCGTCCAT        CAATCCATGGTA AGGT TATCCTGGATTG         TGATTGGGGGATCAA  60 123
   Dhaf_0245  277409 ..  277455 + -12.3    -3.965   GGATGAATAGGTAAA GGGAGTACCGCCAAACTACTT TGCTC AAGCAGTGGGGCGATACTCCC TTATTACTTTTCAGG 100 67
   Dhaf_0248 NONE
   Dhaf_0249  282498 ..  282513 +  -2.5  -2.70932   GTTCTTAGAAGAAGA              GTAGG CCAGAT CCTGC               TGCTTGCGGCGGGGC  41 22
   Dhaf_0250 NONE
   Dhaf_0251 NONE
   Dhaf_0252 NONE
   Dhaf_0253 NONE
   Dhaf_0254  287164 ..  287204 +    -9  -3.20028   ACAACACTGCTCAAT G-AAACTCGTTGCAGGAGG TTCT CCTCCTGCAACGAGAAAAC  TCCTTTTCTAATAAA  69 51
   Dhaf_0255 NONE
   Dhaf_0256 NONE
   Dhaf_0257 NONE
   Dhaf_0258 NONE
   Dhaf_0259 NONE
   Dhaf_0260 NONE
   Dhaf_0261  293248 ..  293275 +  -4.7  -3.12999   TCTATAGGAGGCGGG        TGCCACAGGGC GGCTAA GCCCAGTCGCG         TTCAATCTAGGGTCG  51 72
   Dhaf_0262  294857 ..  294888 +  -9.5  -4.75372   TAGTCTAGAAATGAA      GAGCCATCTCTTT GTTACG GAAGAGATGGCCC       TTTTTGGTAAATCGT 100 72
   Dhaf_0263 NONE
   Dhaf_0264  296914 ..  296964 +   -15  -5.00616   GCTGGCTGATATAAT C-AAGGAGCTGCGGAGA-GAGAAC CTTAA GTTCACCTTTCCGCAGCTCCTTCG TTTTTTGGACCGGAA 100 45
        nrdR  297883 ..  297898 +  -3.2  -3.41878   TAGGACTGAGGAAAA              TAGGGC TGGG GACCTA               TTCTAAATTGCGAGA  49 73
   Dhaf_0267  301453 ..  301506 + -21.5  -2.80879   GTAATGATTGCTTAG TTATAGAAAAGGAGCCATGGGAAAT CTGA ATTTCCTATGGCTCCTTTTTTGTAG GTTATTCAGGTTCAT 100 37
   Dhaf_0268  303476 ..  303505 + -11.5  -2.70932   GCAGCAACTCATATT       TCTCAGCGGGATC CCAG GATTTCGCTGGGA        TGCTTACGGCGAAGG  75 329
   Dhaf_0272  307242 ..  307281 +  -9.3  -5.30155   TTGAGCAAAATCAGG  GCAGCTGCGCAATGAAC GGCAAA GTTCATCAGGCAGCTGC   TTTTTTCATTCATAA 100 37
   Dhaf_0274 NONE
   Dhaf_0275 NONE
   Dhaf_0276 NONE
   Dhaf_0277  311468 ..  311483 +    -9   -3.8493   CAGAAAGTATCTTTG              GATGGC GGAA GCCATC               TCTTCTTTTTGCTCT  76 212
   Dhaf_0280  312888 ..  312902 +  -3.5  -2.82491   GATCTATTTGACTTA               TCAGC TAATT GCTGG               TATAGTGAATGTGTC  45 47
   Dhaf_0281  313395 ..  313420 + -15.5  -4.43501   CAGTTTTGAAGATTT         GCCGCAGGATT TTGA AGTCCTGCGGC          TTTTCTACCTGCGTT 100 90
   Dhaf_0282  314610 ..  314630 + -14.1  -5.60864   CAGACTAATGGAGCG            TGTGTCCCA AGT TGGGACACA            TTTTTTTGATGTATC 100 33
   Dhaf_0283  316462 ..  316509 + -18.8   -3.3341   AAGATAAAAAGGGAA GATAATGAAGGAGTGAGCCATCT AAA AG-TGGGTCACTCCTTCATTGTC TTCTGGAGGCTTTTT 100 34
   Dhaf_0284  317638 ..  317656 +  -3.2  -2.94099   GCCTCTAAAATAAAC             TTGTAG TCCGGAT CTACAA             TCTCTGCTGAAAGGG  44 79
   Dhaf_0285  318136 ..  318168 + -12.8  -4.66163   CTGGCGTGAAAAAAA      CACCGATGCTGCCT TTTAC AGGTGGTATCGGTG      TTTTTCAATGAGAGT 100 67
   Dhaf_0286 NONE
   Dhaf_0287  320646 ..  320678 +   -15  -4.25256   TAGTTGATAACAAAA     GGAACTGTCCTGGCT GAGA GGCC-GGACAGTTCC      TTCTTTTGGTGCGCC 100 71
   Dhaf_0292  328268 ..  328285 +  -9.9  -3.14564   TAACCCTTGCGGGGG             CTGCAGT GGAG ACTGCAG              TTCCTGCAAGCATCC  74 128
   Dhaf_0294  330187 ..  330197 +  -8.2   -2.8092   GCCTGGGCCTGGCGA                 GCCG TTA CGGC                 TATAATACGGTGTTC  64 262
   Dhaf_0296  332232 ..  332277 +   -18  -4.65895   GAGTTTAGTTGCAAA TCCCTCTAAAACGTAGATAAG CTGGT CTTATCTGCG-TTTAGAGGGA TTTTTGCATAACAAA 100 45
   Dhaf_0297 NONE
   Dhaf_0298  333349 ..  333373 + -10.8  -4.15106   TGGCTCAGCTTAAAA         CCGAG-GAAGC AGCA GCTTCACTCGG          TTTTAAACATTAATC  93 51
   Dhaf_0299  334994 ..  335009 +  -4.6  -2.75975   TTGTTTGAGTGGAGT              CCATGG CGGA CCAAGG               TGGTATGTCTTGAAG  49 33
   Dhaf_0300  335796 ..  335837 +   -11  -2.87132   CGCACACGCTGATGT CAGTAAAGGATTCTGGCA TACTTT TGCTGGAATCCTTTGCCG  TGTCTGGGGAAGCAC  77 29
   Dhaf_0301  336900 ..  336922 + -12.1   -4.8622   TAGGTGCATGAAAAA           GGCGAATTC CTGAA GAATTCGCC           TTTTTCATTGGAACA 100 97
   Dhaf_0306  343854 ..  343885 + -10.3  -4.13767   CGTGATTGAAATAAA     GCATCCCAGGAGCCC CGCA GGG-TC-TGGGATGC      TTTTAACGTCAGGAA  91 65
   Dhaf_0308 NONE
   Dhaf_0309  348231 ..  348244 +  -5.3  -3.16914   CATTTATAGTGAGAG               TAACC TTAA GGTTA                ATTTTGCTGAATGAT  53 63
   Dhaf_0310 NONE
   Dhaf_0311 NONE
   Dhaf_0312  351183 ..  351213 + -17.8  -3.14132   AAAAGCTGCCTGGGA       CGAGGGGGAAATAT AAG ATATTTCCCCTTCG       TTCCTACACCAGAGG 100 43
   Dhaf_0313 NONE
   Dhaf_0314 NONE
   Dhaf_0315 NONE
   Dhaf_0316  355089 ..  355127 + -14.7  -3.31515   TTGGATATAGAGTAA   GAATACCCGTCATGGTT CACAA GGCCCTGACGGGTATTC   TTATAGAAGCTCTTT 100 60
   Dhaf_0317  355921 ..  355939 +  -2.4  -2.91274   ACTAACTTCTACTAA             CTTCCA TGTATAT TGGGAG             TATAATTAGGATGAC  42 101
   Dhaf_0318  356540 ..  356558 +    -3  -3.40403   TGCGTTAAGGCTCAA             CAGCAAAG CAA CTGAGCTG             TTGTGATGAAGAAGG  47 11
   Dhaf_0319  358183 ..  358195 +  -3.3  -2.94976   GCAATCCTTGTTTTA                GTACC GCC GGCAC                ATTGTTTGGAGCCTT  44 68
   Dhaf_0320  359713 ..  359734 + -13.7  -4.68593   GGCAAATTATTTGAA           CCCGGTTCC GAAT GGGACCGGG            TTTTTGCGTCATCAG 100 46
   Dhaf_0321  360498 ..  360519 +  -3.6  -5.19328   AAACGATGACTTAAA           GCGCTTAC GATGGA GGAGGCGC            TTTTTCTTGTACCGT  77 65
   Dhaf_0322 NONE
   Dhaf_0323  361194 ..  361205 +  -2.2  -3.07791   CATATTTACAGAGAG                CCTT ATTG AGGG                 GCTTTTTTTATTTGG  43 17
   Dhaf_0324 NONE
   Dhaf_0325  362205 ..  362249 + -10.2   -5.9003   AAGCTTATTTTCAAA TCCCTCACTAC-TGGATAAAC GGGT GTTTATCTATGTTGGGAGGGA TTTTTTTGTTCATTT 100 132
   Dhaf_0327  363949 ..  363961 +  -4.8  -3.95324   ATGTGTTACGACTAT                CAGG CCTAA CCTG                TTCTTATTGGCAATA  59 299
   Dhaf_0332  368847 ..  368883 +    -3  -6.04324   TAAGATTTAATTAAA   CCATGGAGGTTTAGCCC AAAA GGGGTTAA-CTCTGTGG    TTTTTTATTTTTTCG  95 114
   Dhaf_0333  369256 ..  369266 +  -8.2  -2.59564   GAGCCAAAAAATATC                 CCCC CAT GGGG                 CTTGTGAGATAAAAA  63 39
   Dhaf_0334 NONE
   Dhaf_0335 NONE
   Dhaf_0336  372060 ..  372071 +  -5.8  -2.97747   TATATGGCAGTAAGA                CAGC AAGA GCTG                 TCTGTAATGTAAAAA  54 2
   Dhaf_0337 NONE
   Dhaf_0338 NONE
   Dhaf_0339 NONE
   Dhaf_0340 NONE
   Dhaf_0341 NONE
   Dhaf_0342  380153 ..  380195 +  -7.3  -4.77775   TACCTTCTCTTCTTG CTCATTTT-TTGGTCCCA TTTGGGTC TGGGATCAATAAAATGGG TTTCTTTTCTAAACT  85 289
   Dhaf_0343 NONE
   Dhaf_0344 NONE
   Dhaf_0345 NONE
   Dhaf_0346  384577 ..  384591 +  -9.2  -3.58801   CTGAAGGATTGGGGA               GGGGGG AGA CCCTCC               TTTAGGGGATTATGT  78 261
   Dhaf_0347 NONE
   Dhaf_0348  385353 ..  385392 + -14.3  -4.78149   TCGTAAGTACGAAAA  GGCCCCTTGCCAGGGAA AATGAG TTCACCGGCAAGGGGTC   TTTTTAGCTTATAGA 100 77
   Dhaf_0353  394067 ..  394084 +  -7.1  -3.04517   AGGAATTCTTTGGTG             TTGCTTT CTTT AAAGCAA              ATTTTAGCAGCCAAT  59 434
   Dhaf_0365 NONE
   Dhaf_0366 NONE
   Dhaf_0367 NONE
   Dhaf_0368  408764 ..  408793 + -15.7  -4.07568   CCTGGCTATGGGAAA       CAGGGGAGAGGGG TATT CCCCGCTCTCCTG        TTTTCACCGGCAGGA 100 45
   Dhaf_0369  410825 ..  410868 + -14.8  -2.80252   ATATGCCCTCTCAAA TACCTTTCATAACCAGGTCT CGCT GGAGCTGGTCATGAAAGGTA TCCTATTGTCCGGCT 100 73
   Dhaf_0370  412475 ..  412497 +  -7.7  -4.80167   TGCCTTGTTCACCCA           GGGCGAAGA GTACA TCTTCTCCC           TTTTCGTTTTTGGTC  85 257
   Dhaf_0372 NONE
   Dhaf_0373  414868 ..  414890 + -10.6  -4.65895   TACAAGTGCAAAAAA           TCAGCAGGTT GAG GGCCTGCTGA           TTTTTCCATAGACAC 100 46
   Dhaf_0374  415842 ..  415864 +  -4.9  -5.22289   AAATTTAAGGCGAAA           CAGCAGATT TTTAT AGTTTGCTG           TTTTTATATTTGATA  80 79
   Dhaf_0376 NONE
   Dhaf_0377  419344 ..  419356 +  -2.6  -2.72461   CCGGCTACGGGACGA                CTGC CCAGA GCGG                CTTTAGGGGCGGTTC  41 461
        panB  422252 ..  422284 + -11.5  -4.92757   GCTAAAGCTAAGAAA     GCAGCATGGCCATT TTTTCT AATGGC-ATGCTGC      TTTTGTTATTCCTGC 100 36
   Dhaf_0382  425017 ..  425041 + -10.8  -5.03145   CAGATCAGGATATTG          CGAAGAACCC GTAAA GGGTTCTTTG          TTTTTTGCAGAGTTG 100 51
   Dhaf_0384  427186 ..  427205 +  -9.3  -6.12458   TAAATAGGCCTTTAG            CCCTGCT ATGGCA AGCAGGG             TTTTTTCTTTTTTTA 100 127
   Dhaf_0385  427668 ..  427698 + -13.5   -5.7827   GGGGACATGGGCATA       CTTCGTTTTTGCT TGATT GGCAAAAACGAAG       TTTTTTATTTATCTT 100 10
   Dhaf_0386 NONE
   Dhaf_0387 NONE
   Dhaf_0388 NONE
   Dhaf_0389  432480 ..  432515 + -13.4   -3.7941   AGTAGGTTGAATGAT    GAGCCATAGACTAGCC CTGG GGTTAGTCTATGGTGC     TTCTTGTGGCCGATC 100 36
   Dhaf_0390 NONE
   Dhaf_0392 NONE
   Dhaf_0393 NONE
   Dhaf_0394 NONE
   Dhaf_0395  437807 ..  437819 +  -2.7  -3.93367   GTGTGCCTGGTTAAG                GTTTG AGT TAAAC                TATTTTATTCAAGGA  54 20
        gltX  439691 ..  439720 + -13.7   -5.1167   CAGAGTGGAACCGCG       GAAATCCTTCGTC TCTG GACGGAGGGTTTC        TTTTTATATTGAGTT 100 407
   Dhaf_0397 NONE
        cysS NONE
   Dhaf_0399 NONE
        thyX NONE
   Dhaf_0401 NONE
   Dhaf_0402  445151 ..  445172 +  -7.9  -5.80817   ACCAAAGACGAAAAT           CCGCATGGC TAAA GCTCTGCGG            TTTTTTTATATTGAA 100 393
        rpmG  445532 ..  445542 +  -3.2  -3.32521   GTTGTCAATGATGGT                 GGCT CAG AGTC                 TTGTAAGGATGTGAT  47 106
        secE  445822 ..  445843 +  -2.2  -3.05343   AAGGCAAGTTAGTTT           GGGGCCTT GTATTG GAGGTTCC            TGTTCGAAATATGAC  42 68
   Dhaf_0405  446364 ..  446378 +  -5.7  -2.71763   CTTGATTTTGCTCAG               GTCGA GAAAG TCGAC               TAGTGTCCTTCTCAC  52 8
        rplK  446841 ..  446853 +  -3.3  -3.43187   GCAGTATGGGAATCA                CCATC GTC GAAGG                TTAATGATTTTTGTG  49 9
        rplA  447765 ..  447785 +  -3.9  -5.13344   ATTGGGCCTTCTTAA            CCTCTGC AGTCAAA GCGGGGG            TTTTTCTATTAGTGT  77 191
        rplJ NONE
        rplL  448905 ..  448959 + -23.2  -3.81259   AGCCTATAATAGTGC TTAAAGAAGGCGCCCTTCTC-CACC CATAAA GGTGAGAGGAGGGCGCCTTCTTTGG TTTAATCCATTCTCT 100 45
   Dhaf_0412 NONE
   Dhaf_0413  456703 ..  456730 + -17.8  -4.08706   TCCGGAAAACAAACA        GGGGCTGTTCCT TAAA AGGAGCAGCCCC         TTTATATGATCAGGG 100 48
        rpoB NONE
   Dhaf_0415  464103 ..  464114 +  -4.4  -3.15579   TCTTTGAGGAGGAAA                GCAT ATTA ATGC                 TTGATGAAGCCTTAA  49 111
   Dhaf_0416  464392 ..  464426 + -17.4  -3.97959   AATGTGTTAGTTTTG     GGGATTGCTTGCTTTA TGC TGAAGCAAGCAATTCC     TTTGATATGTTCTTT 100 55
        rpsL NONE
   Dhaf_0418 NONE
   Dhaf_0419 NONE
   Dhaf_0420  468927 ..  468967 +    -9  -3.62096   AGACTTAGAGTCTAT  TGATAAAGGATGCCACAG ATTCA CTGTGGCATCCTGCCTCG  TTTCCACTGCTGGGA  75 72
        rpsJ  469445 ..  469502 +  -7.8   -3.5556   AAACCTGAGCGCAAA CGCTGGTTTAATCGCCTGCCTGAA AGATTAAAGA TTCAGACAGACGAAAAAACTAGCG TTCATTTGGGGTTTA  68 54
        rplC NONE
        rplD NONE
        rplW NONE
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP NONE
   Dhaf_0430 NONE
        rpsQ NONE
        rplN NONE
        rplX NONE
        rplE NONE
        rpsN  475844 ..  475862 +  -4.5  -3.14931   ACAAAGGCGAGCTTC             CTGGCGT GAAGA AGGCCAG             TTGGTAAGGCGTAAG  51 0
        rpsH NONE
        rplF NONE
        rplR NONE
        rpsE NONE
        rpmD NONE
        rplO NONE
        secY NONE
         adk NONE
   Dhaf_0444 NONE
        infA NONE
        rpmJ  481680 ..  481692 +  -3.3  -2.88861   TTGGAATGAATGTAA                CAGCC ATG GGATG                TGTGTCCCAATGGTG  43 146
        rpsM NONE
   Dhaf_0448 NONE
        rpsD NONE
   Dhaf_0450 NONE
        rplQ  484567 ..  484588 + -14.5  -4.75776   GTCTCTGTGAGAAAA           GCCAGGCTT TATT AAGCCTGGC            TTTTTGAGTTGCGTT 100 62
   Dhaf_0452  485802 ..  485830 + -17.6   -4.2349   AGGTTATTTTGCCGA        TCTCCCGCAAAG CTCAC CTTTGCGGGAGA        TTTTCCATGTCCAGC 100 66
   Dhaf_0453  487680 ..  487709 + -16.5  -4.77757   AGCAAGCGCAGGCTG       CCGAGAACCGGTA TCTT TACCGGTTCCCGG        TTTTGCTTTTTCACA 100 39
   Dhaf_0454 NONE
   Dhaf_0455 NONE
   Dhaf_0456  490780 ..  490790 +  -2.4  -3.15592   GAAGGGGGATTGGCT                 GCCC AAT GAGC                 GTTTTAATGGAAATT  43 17
   Dhaf_0457  491771 ..  491824 + -19.3  -3.35438   CTTATCGAAAATCAA TAAAGAAAGATGACCTTAGCCTGCA TTAT TGTAAGATAAGGTCATCTTTCTTTA TTGTGGAATATCATA 100 46
   Dhaf_0463  497522 ..  497532 +  -6.8  -3.28712   AAGAAATATAAAGAG                 CGGT ATA ACCG                 TTATAGGGCCAGGAA  61 212
   Dhaf_0464  499566 ..  499598 + -11.5  -4.66537   TGGATGCATAAAAAA     CAGGGCATTATCAG CAAGAA CTGATAA-GCCCTG      TTTTCTATTGACAGA 100 30
   Dhaf_0468  506264 ..  506291 + -10.6  -4.19953   TTCACTGAAAGGAAA        GCCTGAGGAAAG TCAA TTCTCCTCAGGC         TTTTGGCATTGACTG  91 121
   Dhaf_0469 NONE
   Dhaf_0470 NONE
   Dhaf_0471 NONE
   Dhaf_0472 NONE
   Dhaf_0473 NONE
   Dhaf_0474  514024 ..  514063 +  -3.1  -4.26777   AATATGCCGAAAAAA GGATGGATGTTTGCTTTTT TCTT ACAAAGCAAA-A-CCGTCC  TATTTTTTGCTTCCG  61 506
   Dhaf_0476 NONE
   Dhaf_0477  516649 ..  516691 + -17.9  -3.62275   CATGCCTGGGGCATG GGGCATAAGGCGGATAGCT GGGGA AGCTGTCCGCCTTATGCTG TTTGCCCTGATGAGT 100 91
   Dhaf_0478 NONE
   Dhaf_0479 NONE
   Dhaf_0480 NONE
   Dhaf_0481 NONE
   Dhaf_0482 NONE
   Dhaf_0483 NONE
   Dhaf_0484  526021 ..  526064 + -20.6  -3.70505   AGAATGCCAAATAAA GAGGAACAAACGGATAGC AGTAAGAG GCTGTCCGTTTGTTCCTC TTTAAAATTGATTTG 100 99
   Dhaf_0485 NONE
   Dhaf_0486 NONE
   Dhaf_0487  528666 ..  528678 +  -7.7  -3.56862   CAGGATTGATGATCC                TCAGG TTG CCTGA                TTTCAAAGGGTTTCT  66 475
   Dhaf_0489  534665 ..  534683 +  -9.5   -4.3467   CTTCTATAATGAAAA             CGGCGGC GGAAG GCCGTCG             TTTTCATATGCAAAT  88 72
   Dhaf_0493  542910 ..  542931 +  -3.1  -3.20227   TCAGGAGAAAGTATC           TTGATAAAA CGAA TTTTAGCAA            TCTTAATCATTACGA  46 109
   Dhaf_0494  544827 ..  544837 +  -3.2  -2.71447   TCCCGGGAAACATCG                 CTGT CAC ACGG                 TAATCTATGATGAAT  42 5
   Dhaf_0495  545981 ..  546021 +  -8.5  -5.68438   CAATAGTATATGGTG TGAA-AAGAGGCTCCGGA GGAATG TCCGGGGCCTTTTGTTTA  TTTTTTGTTTAGTCG 100 35
   Dhaf_0496  550805 ..  550838 + -14.7  -3.00441   CTAATAATTAAAGCA     CACTTCCTATCAGGT CAAA GCCGGATAGGAAGTG      CTTTGGTTATGGGTT 100 72
   Dhaf_0497  552137 ..  552164 + -13.6  -4.52703   GAGAGCAAAGAGGAA        GCGCTTGAAATT GCGG GATTTCAAGCGC         TTTTCTAATCATTTC 100 146
   Dhaf_0498  553694 ..  553710 +  -2.3  -3.33671   TTATAATGCAGGTAA              TTATCGT AAA ACAATAA              TTATGAGGTGGATAT  45 101
   Dhaf_0499 NONE
   Dhaf_0500 NONE
   Dhaf_0501  555935 ..  555954 +  -7.9  -5.60993   CTGCTCTGTAGTGCT            GCATACC GGGAAA GGTATGC             TTTTTTTCTGCGCCG 100 30
   Dhaf_0502 NONE
   Dhaf_0503  558418 ..  558433 +  -3.3  -3.48276   TACCCGTATACTCAA              TGTTG AATAAA CAACA               TTATATAAGAGGAGG  49 73
   Dhaf_0504 NONE
   Dhaf_0505  559983 ..  560005 + -11.2   -4.9792   TTGTACGGCAAAAAA           CCGGCGGGAA GAT TCCCCGCTGG           TTTTTATATACCCTA 100 119
   Dhaf_0507  560661 ..  560700 +   -16  -2.60075   ATAATTGTAATTTGG  ATTGTCCCAAAAACGAAA GCGC TTTCGTTTTTGGGACAGG   ATTCGTTGAAAGCGA 100 90
   Dhaf_0509  562065 ..  562108 + -23.6  -3.06815   TGGCCTGATCACCGT GGTTTGTCCCAAAAACGAAA GCGC TTTCGTTTTTGGGACAAATC TATATTAAGGAAGAT 100 33
   Dhaf_0510  563455 ..  563482 +    -4  -4.06179   CAATGAAGCGTGCGC        TGGACTGCGTGC AGAG GCACGAAAGCCA         TTTATGCCTTTTCAG  59 399
   Dhaf_0513  564280 ..  564318 + -22.7  -3.92522   ACTGTCTTCTCGAAA   GATCAAAACAGCGGGGT ATCAA GCCCCGCTGTTTTGATC   TTTATGCACTTCCGA 100 109
   Dhaf_0515  567806 ..  567833 + -17.2  -3.21218   TTCATTAGGAGACAA        GAAAAACCGAGG CTCG CCTCGGTTTTTC         TTGATCATAAAACAT 100 48
   Dhaf_0516  570145 ..  570180 +  -7.4  -4.53034   GCCAAAGGAAAATTA    GCCTGCCGCCAAACGT TTTA ACGTCGAGAGGCAGGC     TTTTGGTTCTATACA  78 134
   Dhaf_0519  572047 ..  572067 +  -9.8  -2.64973   GCACACGCCTCTTCC            CACAAACG GGGCA CGTTTGTG            TAGTGTAGGCTTCAT  66 439
   Dhaf_0521 NONE
   Dhaf_0522  575003 ..  575042 +  -7.9   -4.1899   AAAAGTAAGGTTAAA  CGGGGAAATGTAAGCCA AAGCCA TGGCGGATATTTCCCTG   TTTTGCGTAAACTAG  76 53
   Dhaf_0523 NONE
   Dhaf_0524  577926 ..  577965 +    -7  -2.70932   AGTATTGTCAGCGGC  GGGGTGGAGCATTAGGAC ACAT GCCCTGATGCGCTCTCCC   TGCTTGGAGACCCCC  56 11
   Dhaf_0525 NONE
   Dhaf_0526 NONE
        clpP  579246 ..  579289 + -19.1   -3.5394   ATAGGGAGTCAGGAT TTGTTCGTCCCGGATTGAA CATGCA TTCAATCCGGGACGAACTG TTTAGGCCACCGTTT 100 138
   Dhaf_0528  580934 ..  580967 + -12.5  -4.25104   GCAGGAAGTCAGAAA     GACAGATACCACGTT TTCC GGCGTGGCATCTGTC      TTTTGCTGCACAAGG 100 72
   Dhaf_0531  587484 ..  587502 +  -8.8  -2.87136   GGCGTTCACTTCCTG             GAGGCTGG CGG CCAGGCTC             TGTGATGCTTCCTCC  62 505
   Dhaf_0542  600466 ..  600519 + -16.1   -5.1287   CCAAACCGATACGGA AAAGCAAAGAGATAGGCACTGCCTC TTGC GGGACAGCGCCTATCTCTTTGCTGA TTTTTTGAATATACG 100 58
   Dhaf_0543 NONE
   Dhaf_0544  601379 ..  601398 +  -2.8  -4.32678   TCAATCATAAATATT            GAAGCGGT CTTA ACTGATTC             TTGTTTCTTTAAAAA  59 24
   Dhaf_0545  603160 ..  603185 + -12.7  -5.55001   GACAAATCCTTGGAA         CCCTTGCACCTC ATG GAG-TGCAAGGG         TTTTGTTTTTTATTA 100 42
   Dhaf_0546 NONE
   Dhaf_0547 NONE
   Dhaf_0548 NONE
   Dhaf_0549  607667 ..  607702 + -10.5  -3.16217   TCTTAAATTTAAACA    CCCTGGGCTCTTCACT CTTGA GGTG-AGGGTCCAGGG    TATCTTAACTTTGAA  77 44
   Dhaf_0550 NONE
   Dhaf_0551  610568 ..  610602 +  -8.7  -5.96219   GAGGCCAAAACAAAA    GCCCAG-TCTTTGTAG AAAA TTACAAAGAACCGGGC     TTTTTTTTGTAGATA 100 66
   Dhaf_0553 NONE
   Dhaf_0554 NONE
   Dhaf_0555  615771 ..  615785 +  -5.6  -3.45832   GGTTTATTCTGATCG               GCACCC AGG GAGTGC               TTCATTGTCAAATTG  59 29
   Dhaf_0556 NONE
   Dhaf_0557  617711 ..  617735 +  -8.5  -4.72272   TCGTGTTTGTAAAAA          GGGAGCATGCT TGC GGCAAGCTCTC          TTTTTACTAGGCGCC  91 84
   Dhaf_0558 NONE
   Dhaf_0559  620523 ..  620549 +  -2.9  -3.97308   AGCCCCTGACAAGCA        GACCAACGCGCT TTCC AGC-CGGCGGTC         TTTGACTTTTATAAT  56 374
   Dhaf_0564  624432 ..  624465 +  -6.8  -5.63517   TGACACAAAGGAAAA     CCTTATTCAAAGAG CTTAGA CTCGGTGAATAAGG      TTTTTTATTTGGGGC 100 74
   Dhaf_0565  625119 ..  625137 +  -3.8  -2.93853   GGCTAACCTGACTAA             CAGGAAGA CAG TCCTTCTG             ATTTGATTGAGAAGC  46 173
   Dhaf_0568 NONE
   Dhaf_0569 NONE
   Dhaf_0570  630040 ..  630074 +  -7.2  -5.01811   TATCATCACGGGCAG     ATGAACCCCATGAG CAAAGAA TTCATGGGGTTCGC     TTTTTGCTTTAATCA  89 120
   Dhaf_0571  632125 ..  632151 + -10.9  -5.14563   AAAAAGGATCTTTCA         GCGGACTCTGT TAAAT ACAGAGTCCGG         TTTTTTAATGCGGCG 100 114
   Dhaf_0574  636263 ..  636303 + -13.5  -4.78157   TAATGACCAATTAAA  GACCAAACCGCTTTCAA ACAAGAC TTAGAAGCGGTTTGGTC  TTTCTTCTTTTTGAT 100 82
   Dhaf_0578 NONE
   Dhaf_0579 NONE
   Dhaf_0580  640333 ..  640352 +  -9.2  -4.92385   GTGAGTTATAGAGGG            CGCCGGCA AAAA TGCCGGCA             TTTTCTTTACGTATC 100 79
   Dhaf_0581 NONE
   Dhaf_0582  644379 ..  644394 +  -3.2  -3.93963   TGATTTCCGTAATCT              CTTCCT TGCT GGGAGG               TTTCTCAATGATGGT  56 194
   Dhaf_0583 NONE
   Dhaf_0584  645127 ..  645154 + -10.7  -4.07246   ACATAGTTATACTTA        CTACAGGTGGA GTTTTA TCCATCTGTAG         TTTAGTTTGACCTCA  90 84
   Dhaf_0585  647386 ..  647407 +  -5.9  -5.44119   TTGATGGTATTTAAA           TAAGCCTGA CACA TCGGGTTTA            TTTTTTTGCCATAAA  90 42
   Dhaf_0586  649471 ..  649501 + -14.7  -5.47218   TTCCTATCGCACAAA       GCAGGACCATCCG CCAAA CGGGTGGCCCTGC       TTTTTTTAGGTACAG 100 51
   Dhaf_0587  649960 ..  650003 + -16.3  -3.39142   TCATATTAAATTAAA GAGGCCAATCCAATATCAT CGGCAC ATGATATCGGATTGGCTTC TTGGTTGCCTCTGAA 100 136
   Dhaf_0588  651761 ..  651795 +  -2.7   -5.0916   TATCCGCAAGATAAA     CACGGTTGATCTGCA CCCAA TGCTTTTCACCCGTG     TTTTTATCTTGAAAA  74 463
   Dhaf_0590 NONE
   Dhaf_0591  653636 ..  653648 +    -2  -2.73007   TGTTCCCATAGGATT                TTCA GATGG TGAA                CTTTAACAGCATCTT  40 7
   Dhaf_0592  654096 ..  654117 +  -9.5   -3.6215   ATAGACACAGAAAAA           GCCATTGAT GAAA ATCAGTGGC            TTTAAAATGACTTAA  78 95
   Dhaf_0600  658078 ..  658109 + -10.3  -4.32201   TCAATCACAAAAAAA      GCTTCTCTAAGAG CTGAAC TTCTTGGAGAAGC       TTTTAAATTAGTTAA 100 57
   Dhaf_0601  658536 ..  658576 + -22.3  -3.29144   GGATAAAGGAACACA  TTAGAGAATAAGACTTGGT TAT GCCAAGTCTTATTCTCTAA  TTATAACGAAACTGC 100 103
   Dhaf_0604  663120 ..  663153 + -12.5  -4.05446   AAGAACAAGAAGAGA     GGACCGTGTGAAAAT CTTA ATTTTCTCACGGCCC      TTTATCATTAAGGGG 100 54
   Dhaf_0606 NONE
   Dhaf_0607  665537 ..  665575 + -16.8  -4.14764   ATAATCATTAAAAAA   GGCGTCCTGCCTCCACTA TTA TAGTGAAGGGAGGACGTC   TTTGGTTATTTGCAC 100 37
   Dhaf_0608 NONE
   Dhaf_0609  667930 ..  667967 +  -6.3  -2.58999   GCCGGGAAAGATCCC   CATCATGCCATGTCTCCG GCA CGGAGAAAGGG-AGGATG   CTTAATATGTCAGCG  54 42
   Dhaf_0610 NONE
   Dhaf_0611  671178 ..  671205 + -11.4  -2.74605   TCTGTAGTTGAAATA        GTGAAGTGGGAT TTCG ATCCTGCTTCAC         TCCATTTTAAAGGAG  81 41
   Dhaf_0612  672156 ..  672166 +  -2.4  -3.01791   ATGCCTTATTGGATC                 CGCG AAT CGAG                 TATTAGAGGGGAGCT  42 9
   Dhaf_0613 NONE
   Dhaf_0614 NONE
   Dhaf_0615  675065 ..  675090 + -14.7  -4.25104   ATACCGCAGCCATAA         AGAACCCCGCG CAAC CGCGGGGTTCA          TTTTCGTGGCGCACC 100 66
   Dhaf_0617 NONE
   Dhaf_0618 NONE
   Dhaf_0619  681437 ..  681478 + -14.6  -3.38294   GCATGCTGACAAAGG ATTTGCCGGAAGTGCTTC GCAAAA GAAGTGCTTCCGGCAAAC  TATGTTTGTATCCAA 100 67
   Dhaf_0621 NONE
   Dhaf_0622 NONE
   Dhaf_0623  685833 ..  685865 + -15.2  -3.73345   GACTGAAAGTGTTAA      TGAGAATGGATTTT AGGCA AAAATCCATTCTCA      TTCCTTTTGATCGTT 100 115
   Dhaf_0624  687734 ..  687766 +  -8.5   -3.1789   ATGTCATCCTATCCA      CCAATGCCCGTCA TATTCAT TGATGTGCATTGG      TCTGTTATGCCCATT  67 55
   Dhaf_0625  690044 ..  690097 + -19.7   -4.8048   CGGAAGAAATTTAAC CCATTGCCGGATTCATCTCCCGCTT CGAC AAGCGGGAGGTGAATCCGGCAGCAA TTTTTGGTATCCCAA 100 27
   Dhaf_0626  690564 ..  690606 + -19.5  -3.17392   CTCATATTAAGCTAA TAAGCCAATCCGATCTC ATTAGCTGA GAGATCGGATTGGCTTA TTGAGTTAAACGCTC 100 97
   Dhaf_0627 NONE
   Dhaf_0628 NONE
   Dhaf_0629 NONE
   Dhaf_0630 NONE
   Dhaf_0631 NONE
   Dhaf_0632  702558 ..  702585 +  -3.4  -3.22668   TTGCTAATGCTTATC        CCAATGAGATTC GAGA GAATCTGGTGGG         TATTATCACGCCTTT  46 364
   Dhaf_0634  707808 ..  707822 +  -2.8  -2.82327   ATTCACGAATAGCCA               TTAGCA ATG TGCAAA               ATTTGCATATCCAAA  42 29
   Dhaf_0635  708744 ..  708757 +  -5.3  -3.74347   AGTTGTCGTACCAGT               GATTG AATT CAATC                TTTGGCATTTATAGA  61 147
   Dhaf_0636 NONE
   Dhaf_0637 NONE
   Dhaf_0638  715467 ..  715478 +    -3  -3.13164   AGATACACTGTAAAT                CAAA TGAT TTTG                 TTCGATAATTAGAAC  46 2
   Dhaf_0639  718941 ..  718953 +  -3.3  -4.41844   GAGTAGAACGAAAAC                ACTCC GCA GGAGG                TTTTATGAGGATTTT  63 35
   Dhaf_0640 NONE
   Dhaf_0641 NONE
   Dhaf_0642 NONE
   Dhaf_0643 NONE
   Dhaf_0644  725768 ..  725782 +    -5  -4.01943   TTGTTTAGAGTAATA               TGCTTA TTT TAAGCG               ATTTTTTTATATGGG  61 33
   Dhaf_0645 NONE
   Dhaf_0646 NONE
   Dhaf_0647 NONE
   Dhaf_0648 NONE
   Dhaf_0649  734196 ..  734206 +    -4   -4.4727   GATAGTGCCTTATTA                 TGAA TAT TTCA                 TTTTATGCGTGTTGA  66 54
   Dhaf_0650 NONE
   Dhaf_0651 NONE
   Dhaf_0652 NONE
   Dhaf_0653  736351 ..  736375 +  -3.6  -3.15699   TCTTTGAACAGGATT          CGTCAATGTA AGAAG TATATGGACG          TGTTCCTCGATCCGT  48 57
   Dhaf_0654  737549 ..  737583 +  -5.8  -4.99134   AGATAACGAAGCATG    GCACATGTGTAGGGT GAAAAA AACCT-CGCATGTGC     TTTTTAATTTCCCCT  82 477
   Dhaf_0655  737876 ..  737926 + -17.1  -3.66541   AAAAACACGGAAATA CG-GATTTGTCCCCAAACGCGACA ACGT TGTCGTGTTTGGGGACATGTCATG TTTGAACTGTCTATT 100 62
   Dhaf_0657  738970 ..  739011 + -25.5  -3.87373   ACCGCGGAAGCCGGA TTTGTCCCCAAACGCGACA ACGT TGTCGTGTTTGGGGACAAA  TTTATGCCGGCTGTA 100 289
   Dhaf_0658  739725 ..  739766 + -15.3  -3.72695   CCATTTGACAAGAGG CTTATCCAGGAATGCGACA ACGT TGTCGCATTCTTGGACATG  TTTCGTGCCGGCCGT 100 33
   Dhaf_0665  746708 ..  746740 +  -9.2   -4.5123   CTGCTTATAAGTAAA     GGCTTCCCG-GGAGT ATGC ACTCTTCAGGAAGCC      TTTCTTTGCTCAGTT  95 47
   Dhaf_0666  747968 ..  747986 +  -6.8  -2.81471   AAAATGGCGGAAGGC             TCGTTAAT CTG ATTGACGA             TATGCTGGCATTCTG  54 421
   Dhaf_0668 NONE
   Dhaf_0669 NONE
   Dhaf_0670 NONE
   Dhaf_0671 NONE
   Dhaf_0672  758001 ..  758040 + -25.2  -3.20633   CAAGATCCTTGCATA  GAAGCCGAACCCCGGC CATATAAA GCCGGGGTTCGGCTTC   TTCAATATATTCTCA 100 246
   Dhaf_0673 NONE
   Dhaf_0674  761751 ..  761783 +   -15  -5.18357   TCATATATAAGGAAA     GGCTTCCCG-GGAGT ATGC ACTCTTCGGGAAGCC      TTTTTTGCTCAGTTA 100 218
   Dhaf_0676 NONE
   Dhaf_0677  764020 ..  764061 + -18.2  -2.60723   AAACCAATTGAACTT TAAAGGCTTCCCCAAGAG TTATTT CTCTCGGGGAAGCCTTTG  CTTCATTGAAGGTCG 100 23
   Dhaf_0680  765918 ..  765948 +  -8.4  -5.48063   TTACGCATCACAAAG      GCTTCCC-AGGAG GTTGCA CTCTTAGGGAAGC       TTTTTTGTGTTCAAT 100 119
   Dhaf_0682  768938 ..  768969 + -20.3  -4.82667   CATAGAACAACAAAA      GCTTCCCGGAGAG CGATGC CTCTCCGGGAAGC       TTTTTCCTCTGCTCA 100 42
   Dhaf_0683 NONE
   Dhaf_0684  771066 ..  771104 + -23.4  -3.67517   GCTGACTGCGGACCA   CAAGACCCCGGAGAGA TGTTTGC TCTCTCCGGGGTCTTG   TTTGCGGTCTTGCTG 100 36
   Dhaf_0686 NONE
   Dhaf_0687  774890 ..  774918 +  -5.9  -5.80364   ACTGACTGATAGGAA        CTGCTTTCTCAGC GCA GCGTTGAAAGCAG        TTTTTTTGTTGAGAT 100 40
   Dhaf_0688 NONE
   Dhaf_0689  776757 ..  776783 + -15.2  -4.15044   TTTCCTATATAGAAA         TCATGCGGCGTA TAA TCCGCCGCATGA         TTTATTAACAAACCA 100 62
   Dhaf_0690 NONE
   Dhaf_0691 NONE
   Dhaf_0692 NONE
   Dhaf_0693  780274 ..  780315 +  -2.7  -3.13592   GAAGTAAGCGGAACG ACAAAGACTGCCGGCTCTC CAAC GGGAGCCGGCAGCTCACGA  TATGGTTTTGCTGTA  44 34
   Dhaf_0694  781563 ..  781584 +  -2.3  -2.57335   TGTAACAAAGTTGCG           GGAG-GTTTA CTA TGAGCACTCC           TAAATTCAGTATTAT  40 50
   Dhaf_0695 NONE
   Dhaf_0696 NONE
   Dhaf_0697  783911 ..  783947 +  -7.4  -3.00418   CAATTTACTCAATAG   GTACAGTCACTTGTCGC CTTG GCTATAAGTGGCTG-AC    GTTCTTTGCTGCGTC  61 69
   Dhaf_0698 NONE
   Dhaf_0699 NONE
   Dhaf_0700  787073 ..  787088 +    -4  -3.41652   TACTCTCTTCATTCC              TGTTGT AAAT ACAACG               TCATTTTTGTCTTTA  52 18
   Dhaf_0701  788835 ..  788845 +  -3.2  -4.11484   AGGTTGTGTGCCTCT                 TCGG AAC TCGA                 TTTTGACAGCTTGAA  58 66
   Dhaf_0704  791989 ..  792006 +  -2.7  -3.88442   CTGATTGAGCAGAAT             GCTTTTGG AGG CCAG-AGC             TTTCATCATGTTTTC  54 316
   Dhaf_0706 NONE
   Dhaf_0707 NONE
   Dhaf_0708  796771 ..  796811 + -14.2  -3.44586   GAATACGAACAGTGC  AGATAAAGTGCGTTTCCA GGCCA TGGAACCGCACTTTATCA  TTCTCATACCTTGGT 100 67
   Dhaf_0709  797628 ..  797647 +  -8.5  -3.52177   TTCTGAAAACCAAAA            GGGTGGC GGTTAA GCCGCCC             TTAAATTTTTTAAAA  71 35
   Dhaf_0710 NONE
   Dhaf_0711  799601 ..  799635 + -17.4  -3.54424   GATAAAGAATTGGAT     GGAAAATCATGAGCAG ATC CTGCTCATGGTTTTTC     TTTAACAAAATGGCC 100 48
   Dhaf_0712 NONE
   Dhaf_0713  801531 ..  801554 +   -14   -3.3344   GGTTTATAAAAATAA          GCGGTAAGAA ATGA TTCTTACCGC           TTATCGGGCTTACCT 100 64
   Dhaf_0714  802472 ..  802499 + -15.6  -5.49809   TCTCAATCAGCTTGG        GCCGCCGACAAA GTGA TTTGCCGGCGGC         TTTTTTTACACTTTC 100 75
   Dhaf_0715 NONE
   Dhaf_0716 NONE
   Dhaf_0717 NONE
   Dhaf_0718 NONE
   Dhaf_0719  807718 ..  807733 +  -6.1  -5.04733   TTTCTGTTTTTAAAA              CCAGG CTTGGA CCTGG               TTTTCTTTATAGTTC  84 65
   Dhaf_0720 NONE
   Dhaf_0721 NONE
   Dhaf_0722 NONE
   Dhaf_0723  810765 ..  810811 + -15.5  -4.16943   GAAGACTCGCCAAAA GCAAGATGATCACGCTGCGTAT CAGG ATATA-AGCGTGATCATCTTGC TTTTGGCATATCGGG 100 103
   Dhaf_0725  812202 ..  812215 +  -3.1  -3.32041   AAAGGATGAAGATGA               GTAAG AGAA CTTGC                ATTTATTTCATCTAT  47 22
        rplM NONE
        rpsI  813248 ..  813296 + -14.1  -3.59979   CCAAGCGTTAATCGC GAAGTACAAAAATCCTCAAACCA GTG TGGTTTGGGGATTTTTTTTCTGC TTTACAATGGCAGGA 100 30
   Dhaf_0728  814249 ..  814277 +  -4.7  -2.90161   TGCTCCTAATAGAGA        TACCCCTTTTT GATAGCA AAAAAGAGGTA        TGATTGTACTTAATA  47 273
   Dhaf_0730 NONE
   Dhaf_0731  817911 ..  817924 +  -5.9  -2.74215   GTGTATACTAAACGA               GCCGG GAGT CTGGC                CATTTTTATAATTCC  53 144
   Dhaf_0733 NONE
   Dhaf_0734 NONE
   Dhaf_0735  821790 ..  821803 +  -2.5  -2.78154   GAAATTCAGGTAAAG               TTAAT ACAC ATTAA                TACTTGCGTATGTGA  42 28
   Dhaf_0736 NONE
   Dhaf_0737  823550 ..  823588 +  -6.7  -3.72576   TGAAGTAAACATCCA   GTGCTTAAGCGGTGAGT TTTAT ACTTGCCGCTTAGCCCC   TTTAGTGCCAAGGGC  65 33
   Dhaf_0738 NONE
   Dhaf_0739 NONE
   Dhaf_0740  826703 ..  826720 +  -9.1  -4.92757   GAGGACAATAAAGGA             CCGAGGC TGTA GCCTTGG              TTTTCTTATTAATCA 100 195
   Dhaf_0741  827514 ..  827536 +  -9.8  -3.65046   CAGATATTAACGAAA           GTCCCTGGTT ATA GGCCGGGGAC           TTCTTGCAATAAAGA  80 61
   Dhaf_0742  828212 ..  828235 +  -9.6  -5.24129   TGATGGCGGCTCTGG          GCCCAAGG GATGCAAA CCTTGGGC           TTTTTTCTGGAAAAG 100 66
   Dhaf_0743 NONE
        sdhA NONE
        sdhB  832140 ..  832155 + -10.4  -5.01546   GCGCTGCTTCTTCTT              GGGCCT GTTC AGGCCC               TTTTTCTATGCCTTT 100 328
   Dhaf_0746 NONE
   Dhaf_0747 NONE
   Dhaf_0748 NONE
   Dhaf_0749  835305 ..  835321 + -13.7  -4.72386   CGATGAATCAAAAAA              CCAGGCC TCA GGCCTGG              TTTTTGCATAGTTTC 100 60
   Dhaf_0751  837057 ..  837083 +   -21  -4.48333   ATAGTTCCAAACAAA         TAGTCCTCGGGG CCA CCCCGAGGACTA         TTTTAATTAGTGTAT 100 72
   Dhaf_0753 NONE
   Dhaf_0754  840227 ..  840249 + -11.4  -3.85909   CATTTTAGAAAATAG           CAGCAGATTT TTA AAGTCTGCTG           TTTCCATTTGCCTAC  95 52
   Dhaf_0755 NONE
   Dhaf_0756 NONE
   Dhaf_0757  842556 ..  842576 +  -3.3  -3.55202   AAAGAGAGGGAGTTG            TTTTAATGG ACG CCCTTAAGA            TGTTCTTTAGAGATC  49 39
   Dhaf_0758  843760 ..  843787 +    -7  -5.46706   CTCCGCGCCATAGGA        GTCGTTGCTTTG GGAT TGAAGCAGCGGC         TTTTTCTTTTACACT  91 43
   Dhaf_0759 NONE
   Dhaf_0760  848719 ..  848758 + -14.4  -3.02461   GCTATATCTCGATAA  ACAAAGAGGCCGATTTGT GTAA ACAAGCCGGCCTCTTTGC   TATTCGGGGCCATTG 100 95
   Dhaf_0769  855898 ..  855911 +  -2.3  -2.83299   CTTTGGCCATAAATA               AGCCT TTTC AGGCA                GTTTGGCTCTACTAA  41 29
   Dhaf_0770 NONE
   Dhaf_0771 NONE
   Dhaf_0772  859490 ..  859500 +  -3.2  -4.39318   TCCGGGGCAATAAAT                 GGAG ACT TTCC                 TTTTGAGTTTACTTA  61 91
   Dhaf_0774  861981 ..  861995 +  -2.8  -2.81178   GAATTTTCGGGGAGA               GGTAAG CCC CTTACG               GTTTCGGATTAATTA  42 68
   Dhaf_0775  864072 ..  864097 + -11.9  -3.64431   AGATTTTGATGCCAG         GCCTGTTCACA TGAT TGTGGGCAGGC          TTATGTATAATATTC  93 163
   Dhaf_0776 NONE
   Dhaf_0777  866725 ..  866762 + -19.5  -2.83715   CTATAATAACAATGA   TATTAAGCCTGTTTGCG CGTC TGCAAACAGGCTTAATA    TATAATGGTCATAGG 100 458
   Dhaf_0778 NONE
   Dhaf_0779  868986 ..  869012 + -16.7  -4.26903   GTAAGGAAGTATAAA         GGGAGCACATC ATGGC GATGTGCTCCC         TTTTCATGGAATCAA 100 57
   Dhaf_0781  869804 ..  869814 +  -5.4  -3.22091   ATCGAAGGATCGGCC                 CTGA AAT TCAG                 TTCCTAGCTTCAAAT  52 307
   Dhaf_0783  871755 ..  871797 + -27.3  -3.72576   AAGTTAATAAGCAAA TAAGCCAGGGGGCGTTCAT GTGTG GTGAACGCCCCCTGGCTTA TTTGCTGAGGAAAAC 100 34
   Dhaf_0787  875798 ..  875849 + -17.5  -4.87318   AGGGGACATAAAAAG AGGAGACAGGTACCATGATTCAA CTTAAT TTGAATCACGGTACCTGTCCCCA TTTTTCACTTTTAAC 100 59
   Dhaf_0790  879170 ..  879199 +   -13  -4.87626   GGAACATGTTAAAAA       GCACGATAATGG ATTGAG CCATTGTCGTGC        TTTTTAATATTCAGG 100 180
   Dhaf_0794  883232 ..  883245 +  -2.4  -4.37092   GTTAAAGTTTAAAGT               GACT TCAGTC AGTC                TTTTGTGAAGGAGCT  58 79
   Dhaf_0795  884570 ..  884584 + -12.8  -4.67982   GATAAGAGAGAGAAA               GCGCCC TCG GGGCGC               TTTTCTTACATGAAA 100 74
   Dhaf_0796  886053 ..  886067 +  -2.1  -2.52464   GATAAGCTTGAATAA               TACCT ATACG GGGTA               TAAATTAAAAGCAAG  39 65
   Dhaf_0797  887748 ..  887784 +  -2.9  -3.06696   TTATCCAAATGATTT    GTTCAAAAAGCGGTTCA TAG TGAACCGCTTCAAGGAA    TATCTTACAAGGAGG  43 29
   Dhaf_0798  888561 ..  888578 +  -3.3  -3.10761   TGGAACTGCCTAAGC             TGCCCAA ATTA TAGGGCG              TGTCATTTCTTAGCC  46 12
   Dhaf_0799 NONE
   Dhaf_0800  889969 ..  890003 +  -9.3  -4.59109   ATCTGTCACTATGTA     AAAAGGAATGGCCTC TATAT GGGGCCATTCCTTAG     TTTTTCGAACCTGTC 100 25
   Dhaf_0803  892632 ..  892650 +  -3.1  -5.96894   ATAAGGATAAAAAAA             GTTCCCT TAAGT AAGGAAC             TTTTTTTGTTTGCCT  95 63
   Dhaf_0811  903398 ..  903419 + -13.1  -3.33696   TCGTGAAAATGAAAA           GAATCCCCA CGTC TGGGGATTC            TTCATTGCGCAAGCC 100 288
   Dhaf_0815  909148 ..  909179 +   -11  -3.34244   TCAAAGGTTTTTTAC      GCAGAAAGCCACC CTTGACA GGTGGCTTTC-GC      TGTATTTATAACCTA  81 50
   Dhaf_0816  909996 ..  910008 +  -2.6   -4.2558   CCTCGCTGCACCCGT                GCTG CAGGA CGGC                TTTTCATAAACAGTG  59 56
   Dhaf_0819 NONE
   Dhaf_0820  914548 ..  914564 +  -9.4  -4.77165   GTCTGAAAAAATGAA              GACGGC GATAA GCCGTC              TTTTGTTGTGGGAAA 100 44
   Dhaf_0821  914968 ..  914979 +  -4.4  -3.03124   CCAAGCAGAGAAAAG                TACC ATAA GGTA                 TCTTGGAGCATAGAA  47 18
   Dhaf_0822  916018 ..  916041 +  -8.1  -4.08767   ATATGTTTCGTCAAA          GGCTCTGGC GAGAAG GTCAGGGCC           TTTTCCAAGGCTGGG  73 237
   Dhaf_0829  922978 ..  922994 +  -2.3  -4.34402   ATAACTCCCATTGGG              GAACA CTATTCT TGTTC              TTTTCGTGTCCAGCG  58 37
   Dhaf_0832 NONE
   Dhaf_0833 NONE
   Dhaf_0834  928956 ..  928969 +  -6.7  -3.21925   TAAGATGATAATGAC               GGCAA TGCT TTGCC                TTAGTAATCCAGTAT  59 112
        glmM  930787 ..  930801 + -11.4  -5.69793   CCAGAAAACTTTGAA               CCGCTC GGA GAGCGG               TTTTTTATTTGGTAT 100 452
   Dhaf_0836  932728 ..  932767 +  -8.5  -3.85256   ATGCTATTGATAAAA  GCCCAGGAAT-GGCGCCG TTTTT CGTCGCTTGGTCCTGGGC  TTCTCTTTAAATATC  75 49
   Dhaf_0837  933767 ..  933814 + -13.6  -3.08467   CTAAATGTTCAAAAT GGAACCCGTGGCA-GAATCGG CAGTGAT CCGGTTAATGCCACGGGTTTC TATATGCTTTCTGGC 100 86
   Dhaf_0840 NONE
   Dhaf_0841 NONE
   Dhaf_0842  938047 ..  938086 + -15.2  -2.90199   TAAGCGATAGATTCT  GGAAGCGGAAGCGTTAGT TTAA ACTAGTGTTTCCGCTTTC   TGCTCTTTCATTAAG 100 90
   Dhaf_0847  942984 ..  942994 +  -6.8  -2.82933   TTATGTGCTATTGGA                 GGCT AAA AGCC                 TATGGTGAATTCAGC  57 51
   Dhaf_0848 NONE
   Dhaf_0849  945517 ..  945527 +  -5.4  -3.54638   CCAATAATGAGTCAG                 CTCA CTT TGAG                 TTTAAAAAAACTTAT  57 194
   Dhaf_0850 NONE
   Dhaf_0851  947416 ..  947438 +  -6.3  -4.70887   AATGAATTCTGGAAT           TGGTGGAAT ATCCA ATTCCTCCA           TTTGTTTCTTCATCA  80 264
   Dhaf_0857  950563 ..  950591 +  -6.9  -3.86944   CATCTCAACTCAAAA       GACCGATTA-GA AATTAC TCTTAATCGGTC        TTTGCTCATTATCGA  67 52
   Dhaf_0859 NONE
   Dhaf_0860  953455 ..  953506 + -11.2  -5.24129   TTGTAAAGACTACAA CTAAGTGGTAGAG-A-GGATTTCC CGGAAC GGATATCCATACTCTACCACTTGG TTTTTTATGAGGGAA 100 52
   Dhaf_0862  955820 ..  955843 + -13.2  -5.52079   ACTAGTGGTGTATGG          CCACCTTCCT AATG AGGAGGGTGG           TTTTTGTTTTAATAT 100 119
   Dhaf_0863 NONE
   Dhaf_0864  957469 ..  957488 + -12.2  -4.78848   TTGAGGTAGTATTAA            TCGGAGAG TGAT CTCTCCGA             TTTTATGTTTGGGAG 100 60
   Dhaf_0865 NONE
   Dhaf_0866  959534 ..  959547 +  -3.1  -4.14598   CCATTAATGAATCAG               GATTC CGCG GGATC                TTTGCTTTGCTTCCA  58 43
   Dhaf_0871 NONE
   Dhaf_0872  964056 ..  964099 + -22.1  -4.78764   TTTGGGCAATCGGCT GATTACCTCCCAGGATAGA TATAAC TCTATTCTGGGAGGTAATC TTTTTAATAGGTTTG 100 55
   Dhaf_0873 NONE
   Dhaf_0874 NONE
   Dhaf_0875  966817 ..  966834 +  -9.9  -5.56673   AATTGTTTGGGAAAA             CCTTCTG ATTG CAGAAGG              TTTTTTATTATGCAT 100 226
   Dhaf_0876 NONE
   Dhaf_0877 NONE
   Dhaf_0878 NONE
   Dhaf_0879  969752 ..  969784 + -13.6  -5.07652   GCTAATAGGATTTAC      TACCCAAGCTCTAT GAAAA GTAGAGCTTGGGTG      TTTTATTTTAAAGGA 100 36
   Dhaf_0880  970547 ..  970573 + -13.2  -3.52506   TGAAGGGGCTTAGAT         TAAAAGGTACTG TTT CAGTACCTTTTG         TATTTGCATTTGCTT 100 41
   Dhaf_0881 NONE
   Dhaf_0882 NONE
   Dhaf_0883  974427 ..  974457 +  -9.8   -5.1963   CTTAAGTAACAAAAA       GAGTGACATCTGAA GAT TTCGGGTGTTGCTC       TTTTTCTTACTTAGA 100 32
   Dhaf_0884 NONE
   Dhaf_0885  976284 ..  976302 +  -3.9  -3.48466   AGCAGGAGTTCCTTT             TTCTCAA AGGTA TTGAGGA             TTACTTCGTTATGCT  51 45
   Dhaf_0886 NONE
   Dhaf_0887  978582 ..  978604 +  -9.2  -4.96848   GACAGTGGTAGAAAA           GGGAATCC AATAAGC GGATTCCC           TTTTTATCTAAAAGA 100 114
   Dhaf_0888  979768 ..  979807 + -20.2  -4.87807   CTATTAAGCTCCAGG  GGGGCATCGCTGGGCTACT TAA AGTAGCC-GGCGATGCTCC  TTTTTCGTATCTTAA 100 55
   Dhaf_0890  981807 ..  981835 +  -9.5   -5.1101   GCTGCTGAATATCGC        TGGGGGGAACGAC AAG GCAGTTCTCCCCA        TTTTTTGCATAGTCA 100 196
   Dhaf_0892 NONE
   Dhaf_0893 NONE
   Dhaf_0894 NONE
   Dhaf_0895  986239 ..  986272 + -12.5  -5.60556   ATATGAAGATGGGCA     GGGCATTGAAAAGGC TTTG GACTTTCCAATGCCC      TTTTTATTTTATATT 100 86
   Dhaf_0896  987599 ..  987634 + -12.7  -3.46068   AAAGCTGCTACCCCT    GAGAGTTCAGGCGGA ATTAAA TCTGCCTGGACTTTC     TCTTTAGCTTAGCAG 100 46
   Dhaf_0897  988941 ..  988993 + -18.1  -2.71011   TTTATCAGCTAATTA CAATAAAAGTACGGGACAAAGGT TTATTGT ACCTTGCTCCCGTACTTTTATTG TGATTAAGAAAAGGT 100 58
   Dhaf_0899  990849 ..  990885 + -11.8  -4.66833   TAAAACAAAAGAGAA    GTAGAGTTTAAGTTCG TCAGT TGAACATAAACTCTAC    TTTTTAGGCTTAAGC 100 22
   Dhaf_0901 NONE
   Dhaf_0902  994529 ..  994576 + -20.1  -3.75153   AAGATGAGGCAAAAA GGGAGCTGTTGCACTGTGAAC AAAATA GTTCGCAATGTAACAGCTCCC TTTAAATTGAGAGAA 100 215
   Dhaf_0904  997914 ..  997950 + -14.3  -3.79787   GGAGATAGAGCGTAA    GCGTCCTCACCCCGCCG TTA TGGCGAAGAGAGGACGC    TTTGAATTAGTATCG 100 63
   Dhaf_0912 NONE
   Dhaf_0913 1004852 .. 1004873 + -12.3   -4.5954   AAGCTGTTTTGGGGA           TGGCCGGAC TAGG GTTCGGCCA            TTTTCTGTACTCTGG 100 46
   Dhaf_0914 1006246 .. 1006258 +  -3.5  -2.68823   GAGTATAAATTTGGC                TAAAA TTT TTTTA                ATTATGTGAACGAAG  44 69
   Dhaf_0915 1007543 .. 1007562 +   -10  -4.16842   AGTTCCACTTAAGAA            GCTGGGTT TTAT AACCCGGC             TTTCTTAAGAGTGGG  88 168
   Dhaf_0916 NONE
   Dhaf_0917 1010565 .. 1010586 +  -7.3  -5.07486   CCTCTATGGAGTCAG           GGAAGAGCT TTCG GGCTCTTTC            TTTTTATTCAGAATA  89 49
   Dhaf_0918 NONE
   Dhaf_0919 NONE
   Dhaf_0920 NONE
   Dhaf_0921 1013641 .. 1013681 +   -15  -5.99154   AAATGAAGAGCAAAG GCGCTCATAAGGAATGTAC AAGG GTACATTTCTTA-GGGCGC  TTTTTTTATTTGCTG 100 151
   Dhaf_0922 1015866 .. 1015907 + -13.9  -4.27316   TGGAAGAAGCATGGA AAAGGCCACTGATACATCT TTGT GGATGTATTGGTGGCCTTC  TTTTCGATTGCGAAG 100 85
   Dhaf_0925 1019588 .. 1019601 +  -3.9  -3.28791   ACGATAGAGCAACTG               TTCAA TTAA TTGAA                TTATGAAAGAGGAAT  49 115
   Dhaf_0926 1019831 .. 1019848 +  -2.8  -2.91264   ATTTGATATTCTATA             TATGAA CAGATA TTCATA              TGTGTAAATGAACAA  43 82
   Dhaf_0927 1022303 .. 1022314 +  -5.8   -2.7264   CCTGAAAAAGCTGCC                GCTC TTCC GAGC                 CTTTGAGCCCCCTTT  52 8
   Dhaf_0928 1022789 .. 1022821 + -11.3  -5.63517   AATGAAATAGACAAA      GGCGTACTCTCTC ATTAGTG GAGCGGGTACGCC      TTTTTTATTTGAAAC 100 36
   Dhaf_0929 1024427 .. 1024455 +  -3.3  -3.36968   TATGCTCCGAAATTC        TGTTAGTCT ATTCTATTTTC AGACTAACA        TTATGAAATTAACTC  47 53
   Dhaf_0930 NONE
   Dhaf_0931 1026152 .. 1026164 +  -3.3  -3.23855   ATTGAACAGCAGACA                CCGTA TTT TTCGG                ATTATTTTTAAGACC  47 2
   Dhaf_0932 1026671 .. 1026683 +  -6.2  -3.20382   GATCCTCAATCCCTT                GGCG CCAAA CGCC                TTCGTGAATGTAAGA  57 99
   Dhaf_0933 1027866 .. 1027886 + -15.5  -5.75822   ATGGAAACCTATTTC            CTCCGAGAG ATG CTCTCGGAG            TTTTTTTAGTTTATA 100 59
   Dhaf_0935 NONE
   Dhaf_0936 NONE
   Dhaf_0937 NONE
   Dhaf_0938 1030736 .. 1030765 + -10.1  -4.00532   AGGAATAAACAAAAA       GCTGCAAACCGCCT AAA AAG-GGTTTGCAGC       TTTCGTATTTAAGAG  86 66
   Dhaf_0940 NONE
   Dhaf_0941 NONE
   Dhaf_0942 1035545 .. 1035556 +  -4.4  -2.95774   CTAAAGCTTAAATTT                GTCA GTGA TGAC                 TCTATGATGGCTATA  47 30
   Dhaf_0945 1037396 .. 1037444 +   -17  -5.48163   AAAAATGGAGCAAAG GCGCT-CAAAGAGACATGTACCT GCAC AGGTGCAAGTCTTTTTGGAGCGC TTTTTTGGTTTATTT 100 124
   Dhaf_0946 NONE
   Dhaf_0947 1043717 .. 1043765 +   -20  -4.28369   AAATGTGGAGTAAAT TAAAGGGACGATTCATTGGACAG GGTG CTGTC-GATGAATCGTCCCTTTG TTATTTTGGATTATT 100 73
   Dhaf_0948 1045467 .. 1045477 +  -5.4  -3.56366   AGCGCTCCATGGGCC                 GCAA AAA TTGC                 TTTGACAGAATTATT  57 440
   Dhaf_0950 1046446 .. 1046457 +  -5.8  -4.07885   GTAAAATAATCCGGA                GGCA ACGA TGCC                 TTTTCCGGGGGAGTA  68 32
   Dhaf_0951 1047407 .. 1047421 +  -2.2  -2.94962   GTAGAAAGATGTGTC               TTATAT GCA ATATAG               TGTAGTTAATAGTAT  42 430
   Dhaf_0952 1047799 .. 1047812 +  -2.4  -3.30124   CGGGTGGCAGCAGAA               CAGT CTTTAA ACTG                TTCTGAGACATAAGG  45 144
   Dhaf_0955 1049535 .. 1049560 +  -4.6  -3.37975   AGTCAAAGGGATGGC         TGCCCGTGGC AGCAAA GCCATGGACG          TTATAAGTAGTGCCT  53 39
   Dhaf_0956 1050472 .. 1050483 +    -3  -3.09968   TATTTGGAGTTGACT                TATG AAAG CATA                 TATTGGAATTAAGTA  46 84
   Dhaf_0957 NONE
   Dhaf_0958 1051475 .. 1051488 +  -3.1  -2.99216   AACTGTTTTAGTAAA               TGCTT GGGG AAGCG                ATTTGTCGATTGGTT  44 91
   Dhaf_0959 NONE
   Dhaf_0960 1052631 .. 1052646 +  -6.2  -3.67558   GGGGTTTAAAAAGAA              GCTAAA ATAG TTTAGC               TTATTGACATATATA  63 16
   Dhaf_0961 NONE
   Dhaf_0962 NONE
   Dhaf_0963 1056068 .. 1056079 +  -2.2  -3.59979   AACATATGCCAAATA                GCAG ACGT TTGC                 TTTGCCATACCCGAA  49 302
   Dhaf_0964 1057342 .. 1057353 +  -7.2  -3.28712   TCATGGTACATAAAG                GGCG ATCA CGCC                 TTATAAGACAGAGCG  64 28
   Dhaf_0965 1058943 .. 1058971 +  -5.4  -3.36968   GAAATTCCGAAATTC        TGTTAGTCTG TTTTATTTT CGGACTAACA        TTATGAAATTAACTC  55 55
   Dhaf_0966 NONE
   Dhaf_0967 NONE
   Dhaf_0968 1060811 .. 1060830 +  -2.2  -3.25378   AAAAGTAGAAGCAAC            CAAATTTT ATAA AAAATTCG             CTTTTGTGGGTCACT  45 33
   Dhaf_0969 NONE
   Dhaf_0970 1062085 .. 1062099 +    -7  -4.77036   AGGTGTATTATAGTA               TCCGGG CAA CCCGGC               TTTTTCATAATAGAC  83 294
   Dhaf_0973 1064629 .. 1064653 + -14.3  -4.52589   TAATATAAAAAAGAA          CCCGGTGCG GCAGTTG CGCACCGGG          TTTTGTATGAGGAGC 100 38
   Dhaf_0974 NONE
   Dhaf_0975 NONE
   Dhaf_0976 1066815 .. 1066832 +  -8.5  -5.42198   CAAGTATAGGTCAAA             TTCCCAA ACGT TTGGGAA              TTTTGTTTTTTAGCC 100 80
   Dhaf_0977 1067130 .. 1067140 +  -6.8   -5.0133   AGACTAACAGAATTT                 CGGA ATT TCCG                 TTTTTTAAAAAACTA  86 74
   Dhaf_0979 NONE
   Dhaf_0980 1069784 .. 1069798 +  -2.8  -3.82375   GGGAGAGAGTATAAT               GCGGAA AGC TTTTGC               CTTTTTTACTTTGAT  52 42
   Dhaf_0981 NONE
   Dhaf_0982 NONE
   Dhaf_0983 NONE
   Dhaf_0984 1072276 .. 1072294 +  -2.4  -3.21194   GCAAAGGGAGGCCGG             TATGGATT ATA AATCCCTG             TTAATAAACTTTATG  43 45
   Dhaf_0985 NONE
   Dhaf_0986 NONE
   Dhaf_0987 NONE
   Dhaf_0988 NONE
   Dhaf_0989 1075574 .. 1075588 +  -2.8  -2.87243   GTGAGGGAATGAAAA               GAAGGA TAA TCCTTA               TACTTCTCATACTAA  42 77
   Dhaf_0990 NONE
   Dhaf_0991 1076821 .. 1076857 + -10.1  -3.45571   GCGGAGGGGCTTAGA    GGACGCTTTATGAGCAC AAT GTGCTTAAGAGGCGCCC    TTCATCTTTGGGGAC  78 52
   Dhaf_0992 1078676 .. 1078713 + -22.9  -5.31456   GATAAAGCCAAAAAG   GAGTATCGCCCTGCTCG ATCA TGAGCAGGGCGATGCTC    TTTTTTATGCCTTGC 100 101
   Dhaf_0994 NONE
   Dhaf_0995 1082914 .. 1082946 + -10.6  -4.40804   CGAGCATGCTTAAAA      GGAGAAACCCGCGT CATCA ACGATGGTTTCTCC      TTTTATACCGTAATC 100 28
   Dhaf_0999 NONE
   Dhaf_1000 NONE
   Dhaf_1001 NONE
   Dhaf_1002 1089819 .. 1089841 +  -9.9  -4.13945   TCTTTCAGTGAAAAA           GGACTGTCT GGTCA GGACAGTCC           TTTTGGGCTAAAGAT  88 128
   Dhaf_1004 NONE
   Dhaf_1005 NONE
   Dhaf_1006 1094264 .. 1094284 + -11.9  -5.50499   AAATTACGCGAAAAG            TGTCGTGAC TAT GTCACGGCA            TTTTTTTGCGTATCA 100 122
   Dhaf_1007 1095944 .. 1095973 + -10.2  -5.13722   CTGATTTTCTTAGTA       CGAGAACAT-TCC CTTGC GGATATGTTCTCG       TTTTATTTTCATGAG 100 130
   Dhaf_1008 1097293 .. 1097320 + -14.2  -4.23674   GTTAAAATGCTCACA        GAGTGCCGTGAC TCAT GTCACGGCACTG         TTTCTATTGATAAGG 100 53
   Dhaf_1009 1097793 .. 1097806 +  -2.3  -3.69338   TAGGTCAAGTTTTGG               TGCCC AATA GGGTG                TTGTTGCCATTCCTT  49 45
   Dhaf_1010 1098175 .. 1098210 + -14.2  -5.49729   AATATTAATCTAAAA    TTGCCTGG-ATCTTCGC TCA GCAAAGATTCCAGGCAA    TTTTTTTAACTGATT 100 48
   Dhaf_1012 NONE
   Dhaf_1013 1105834 .. 1105883 +  -4.3  -5.54079   AACTAAAAGATAAAA GCCAAGGTAACATTTCACCCTATA GCG TAAGCGGGGAAATGG-GCCTTGGC TTTTTTACTTTTTCA  85 35
   Dhaf_1015 NONE
   Dhaf_1016 NONE
   Dhaf_1017 1110697 .. 1110724 + -10.7  -3.58208   AAGAGCTTAAAGGGA        GAAGCTGTGTGC CTTAA GC-CACAGCTTC        TTGCTTGTTGTGAAA  84 59
   Dhaf_1018 NONE
   Dhaf_1019 NONE
   Dhaf_1020 NONE
   Dhaf_1021 1115149 .. 1115159 +  -2.4   -3.4799   ATAAACCGCCAAACT                 GCCG GGA CAGC                 TTATCACTATTTTCT  47 37
   Dhaf_1022 1116595 .. 1116634 + -15.2  -3.36175   AGATCCTAAGCATGA  TGTAAACCTCAATCATGG ACAG CCTCGATTGAGGTTTACA   TTCTAAATAACCCTT 100 81
   Dhaf_1023 NONE
   Dhaf_1024 1119592 .. 1119605 +  -5.3  -2.57132   CGCATTGGAGATGAA               GTAGT AAAC ACTAC                CTTGTCGGAAAGGAG  49 46
   Dhaf_1025 1121199 .. 1121213 +  -2.8  -2.62263   CTTATTGAAACCCAT               GGAAAA CAG TTATCC               TGATCTGCCGCCGGT  41 8
   Dhaf_1026 1122520 .. 1122536 +  -2.3   -3.1506   AAGGGATTATTTAAA              TAATATC TAG GAGATTA              TTGATGCCAGACTTT  43 16
   Dhaf_1027 NONE
   Dhaf_1028 1124248 .. 1124279 +  -5.2  -4.87893   GAAGGCAATAAAAGA      GAGGCTT-AACCGCA CAA TGGGTTTCAAGCCTC      TTTTTGCTTCAGCTT  75 57
   Dhaf_1029 1126524 .. 1126557 + -11.8  -4.41348   GGTTTAATGCAAATG     AGACCGTT-CCCGGT ATTCC ACCGGGGAACGGTCG     TTTCTTTCGGACAGA 100 34
   Dhaf_1031 1129088 .. 1129125 + -12.6   -3.8211   CTTTCAGTGATAAAG   TCAGCCCGCCGGGTCC CCAAAA GGAAGCGGCGGGCTGC    TTGTTGTGCCTGGGC 100 44
   Dhaf_1033 1130681 .. 1130723 + -14.5    -4.053   TCCTTGGCACATGTT TA-GAAGGCTCTAAAAGCTT CGTA ATGCTTTTAGAGCCTTCATA TTTCTATAAAATACT 100 41
   Dhaf_1036 1132722 .. 1132774 + -20.3  -4.02999   GCTTAATAGATAGTC AAAAATAGTACAGCCAGCAGATC GATTAAA GATTTGCTGGCTGTACTATTTTA TTTCCTATGTTTTTC 100 68
   Dhaf_1038 1135401 .. 1135412 +    -3  -3.94409   AGTTTTGTCAATATA                TTCT AAAT AGAA                 TTTATAGATAGTGTA  56 42
   Dhaf_1039 NONE
   Dhaf_1040 NONE
   Dhaf_1041 1136463 .. 1136499 +   -16  -4.49937   TAGTGAGTAACATAA   GAGGACCAC-AGCAGCC TAAA GGCTCCTTGTGGTCCTC    TTTTCCTATTCTTAA 100 76
   Dhaf_1042 1137476 .. 1137486 +  -6.8  -3.66908   AAACTTTTCCTCAGC                 CGCA TTC TGCG                 TTAATTTTCCCCAAA  65 11
   Dhaf_1043 1138440 .. 1138456 +    -3  -4.08974   ATTTGCCGAGGGATT             CC-TGAC TACA GTCATGG              TTTCTGTGCTGGGAT  58 99
   Dhaf_1044 NONE
   Dhaf_1045 1139694 .. 1139727 + -12.6  -4.84311   AGCTATTAAATGGTT     GGCTCCAG-AGAAGC AAAGC GCTTTTTCTGGAGCC     TTTTATTGTATGCCC 100 32
   Dhaf_1047 NONE
   Dhaf_1048 NONE
   Dhaf_1049 NONE
   Dhaf_1050 NONE
   Dhaf_1051 1147592 .. 1147603 +  -5.8  -2.62171   ACTTCGCTAAAGAAG                GGAG GGGA CTCC                 ATGTTTACCAATCTC  52 43
   Dhaf_1052 NONE
   Dhaf_1053 NONE
   Dhaf_1054 NONE
   Dhaf_1055 NONE
   Dhaf_1056 NONE
   Dhaf_1057 NONE
   Dhaf_1058 NONE
   Dhaf_1059 1154066 .. 1154107 + -15.4  -4.57581   ATCAATAAGGCAATG GCGCCGTTACAAG-AATCT AAGAC AGATTACTTGCAACGGCGC TTTCTTGTTTCAGCT 100 288
   Dhaf_1060 1154684 .. 1154705 +  -2.3  -4.79949   AGAAAACCCAGGTTG           GAGTATATCC GGG GGATCT-CTC           TTCTTTTTTTCAACC  66 96
   Dhaf_1061 NONE
   Dhaf_1063 1158629 .. 1158660 +   -16   -5.5604   TAAGTATAACGCTCG      GAGGCCGGAAGAGGA TTG TTCTCT-CCGGCCTC      TTTTTTGTTGATTCA 100 38
   Dhaf_1064 1159969 .. 1159983 +    -5   -3.1247   AGCTATTGTGGGAAT               TTTCGT TCA ACGAAG               TTGAATATGAAGGAT  51 88
   Dhaf_1065 1160395 .. 1160427 +  -5.7  -5.86976   TGTAAGCAAAAAAGA     GGACCCTTGAGT TTATTGTTTT ACTC-AGGGTCC      TTTTTTATTTTCTAA 100 36
   Dhaf_1066 1161707 .. 1161718 +    -3  -3.53444   TGAAAGGAGGTGGGG                CTAA GAGG TTAG                 TTTACAAAGGGGTAG  49 38
   Dhaf_1067 1162898 .. 1162918 + -11.8    -5.252   ATAGAGGGTAAAATT            GGGGCGGG ATTAC CCCGTCCC            TTTTTTATCGCGCTA 100 50
   Dhaf_1068 NONE
   Dhaf_1069 1164845 .. 1164877 + -16.4  -4.16681   CAATACCCTTTTATA      AAGCCCTCTTCAGG TTTTT CCTGAAGAGGGCTC      TTTTCGGGTCATATT 100 55
   Dhaf_1072 1167253 .. 1167287 +  -9.3  -4.98531   CACGGAGGGATAAAA     GCCTGGGAGAGACTG ATGAA CAGTATCTCTTGGGC     TTTTTAATTTGGAAA 100 249
   Dhaf_1073 NONE
   Dhaf_1074 1168006 .. 1168018 +  -3.3  -2.78816   AAGGGGCGAGTTTTT                CCTTG TCT CATGG                TATAATAGGAAATAA  43 47
   Dhaf_1075 1168997 .. 1169035 + -11.8  -4.34402   ACAATAGGCAAATTT   TAAGGGGTGCTGATAGTT TCG GAATATCAGCACCCCCTG   TTTTGCTGTCAGAGG 100 79
   Dhaf_1077 NONE
   Dhaf_1078 1172081 .. 1172104 +  -7.4  -5.45802   TATCTCCAGACGATT          TGGCACTCCT TTGC GGGAGTGTCG           TTTTTATTTTAGAAG  95 53
   Dhaf_1079 NONE
   Dhaf_1080 1174262 .. 1174272 +  -5.4  -2.78032   GTTCTAGGTAATAAA                 TAGC AGG GCTA                 ATATTTTAAGAAGCG  50 34
   Dhaf_1081 NONE
   Dhaf_1082 1176029 .. 1176041 +  -3.5  -4.79667   GGAATTTTAAGTTGA                TTATT ATC AATAA                TTTTTAATAAATTTT  70 26
   Dhaf_1083 1176921 .. 1176939 + -10.3  -3.95567   TTAAAAAATGCTAAA             GGCACTC GTTTA GAGTGCC             TTTGCTAGTTTTCTT  89 58
   Dhaf_1085 1179628 .. 1179656 +   -14  -4.53707   ATAGAAGTTATTTAA        GTTAGGGCAAGG GCCGG TCTTGCCCTAAC        TTTTCTAAATTTCTT 100 37
   Dhaf_1086 1180094 .. 1180117 + -13.2  -4.89063   CAGCCCATCGGTTAG          CAGACCCTGA GTTA TCGGGGTCTG           TTTATTTTTGAGTGG 100 55
   Dhaf_1087 NONE
   Dhaf_1088 NONE
   Dhaf_1089 1182571 .. 1182619 + -14.1  -3.90762   ACAGGTCATAACAGT TATAAAGGGAGCAAGC-CTTGC CTATGT GCAAGTGCTTGCTCCCTTTGCG TGTTTTTGCAGGCTG 100 66
   Dhaf_1092 NONE
   Dhaf_1093 1186375 .. 1186410 + -12.7   -4.1399   ATAGTTAAAGGTAAA    GAGAAACCCGGCCAA TAAAGT TTGGCTGAGTTTCTC     TTTCTGTATAGGTGG 100 86
   Dhaf_1094 NONE
   Dhaf_1095 1187166 .. 1187195 +  -5.1  -3.01712   TTCGCTCAGCCGCCT       GGGTCAATAATAG TTCA TTATTAATGACTC        TGTTAAACACCACAC  51 204
   Dhaf_1110 1202441 .. 1202490 +  -4.1  -4.84017   CTGCTATAAATGAAT GAGGGGCTGTCGCAAAACGTTTA TAAA TTAACGTAAGGCGGCAGGCCCTG TTTTTCTAGAAAATT  71 64
   Dhaf_1111 1204297 .. 1204331 +  -8.6  -3.97709   GCTGATTAAAACAAA     TACCGGGAGTAGCGCT TAA AATGCTGTTCTCGGTA     TTCTTATTCAGTCAT  77 118
   Dhaf_1112 NONE
   Dhaf_1113 1206693 .. 1206712 +   -10  -4.65895   AATCATAAAAGGAGA            GGGGCTGT GCGA ACAGCCTC             TTTTTAGCTGGACAA 100 33
   Dhaf_1114 NONE
   Dhaf_1115 1209115 .. 1209138 +  -3.1  -3.14344   ACAGTATATTTTGAA          CAGTGGGTT CGCTGT GATCCGCTG           TTAGTGAGCCCGCTG  46 86
   Dhaf_1119 NONE
   Dhaf_1120 NONE
   Dhaf_1121 1215615 .. 1215657 + -12.9  -4.65895   AGGGAGTGCTAATCG GGGGTGTGTTGCGAAATGAA CTAT TTCATTGCGCAGCA-GCCCC TTTTTACGTGGAAGG 100 7
   Dhaf_1122 NONE
   Dhaf_1123 1217759 .. 1217769 +  -5.4  -3.01924   AAAGAAATGGGGATG                 GAGA TAC TCTC                 TGTTAAGAAGAACTA  52 58
   Dhaf_1124 1218450 .. 1218483 + -14.1  -3.53444   AAGGCGATAAACAGG     CGAAAACGCATCCGCA ATT TG-GGATGCGTTTTTG     TTTGGAAACCAATCC 100 40
   Dhaf_1126 NONE
   Dhaf_1127 1221348 .. 1221361 +  -5.3  -3.85748   AAAGAGAATTGGAAA               GTGAT TCCA ATCAC                ATTTTTTTAGGGTAA  61 58
   Dhaf_1128 1221932 .. 1221980 + -11.4  -4.87892   TATCATGAAATAAAT GACGGTATAATATCTGACCAT TTTTAGGT ATGTTCAGAT-TTATACCGTC TTTGTTTTATTAACA 100 170
   Dhaf_1129 NONE
   Dhaf_1130 1223296 .. 1223309 +  -3.9  -4.24422   ACAATATATGTGACA               GAAAT GTGA ATTTC                TTTGATTTCTTGTAC  63 296
   Dhaf_1131 1224367 .. 1224395 +  -6.8  -4.78237   CTATTGTTCTCCAAA        GACATACTTTCT CACAA GGAGGGTATGTC        TTTTCTTATAAGATA  82 72
   Dhaf_1132 NONE
   Dhaf_1133 1227400 .. 1227437 +  -6.4  -5.27399   GATAATAGAAAAAAA  CTATGCAGAGC--CTGGT GAAA GCCAGCCGCGCTGCATAG   TTTTTTCGTATATTA  89 60
   Dhaf_1134 1229117 .. 1229152 + -13.5  -3.84394   CCGAAAGCTTAATAA    GAAGCTCCTGAATGGT GTGGA GCC-TTCAGGAGCTTC    TTTGGGTTGTATATA 100 29
   Dhaf_1135 NONE
   Dhaf_1136 NONE
   Dhaf_1137 NONE
   Dhaf_1138 1232953 .. 1232994 + -25.5  -3.61356   AGAAGACCATAGAAA GAGGGCTGACTTTAGGATT GTCC AATCCTGAAGTCAGCCCTC  TTTGGGGTGAGTAAT 100 59
   Dhaf_1140 1235171 .. 1235197 +  -2.5  -3.51034   ATAGAAAGTTAACAT         TTATTTTTTAT ATAGC ATAAATAATAA         TATTTAATATAGCTA  48 412
   Dhaf_1142 NONE
   Dhaf_1143 NONE
   Dhaf_1144 1238545 .. 1238587 + -21.5  -3.78934   CATAATAGGTGAACA AAGGGCTTTCCCCTGAAGC ATCAA GCTTTAGGGGAAAGCCCTA TTATTCTCAGAGCAG 100 48
   Dhaf_1145 1239120 .. 1239162 + -13.1  -3.83318   ATCATGTACTATATC TAAAGCAACAGCCTTCTGAG CTTT TTCAGAAGGTTGTT-CTTTA TTCTCTTCTTAAAAA 100 23
   Dhaf_1146 1240673 .. 1240728 + -10.4  -3.47403   ATAAGGAAAGAAAAT TGCCCCTGTGCAAATCTGTAATGGTA GATA TACCCTTGCAGAGAGACACAGGGGCG TTCCTTATGAATTGG  80 72
   Dhaf_1148 NONE
   Dhaf_1149 1244057 .. 1244073 +  -5.8  -6.01725   TTGTCAAAAGCTGAA              CCGTCT CTTCC AGGCGG              TTTTTTCTTTTTATT 100 183
   Dhaf_1150 1244910 .. 1244948 +  -9.1  -5.14965   CTGCTCTGAAATAGA   AGAAGGAATTAACACTG GTTAA TAGTGTTAATTCCTTTA   TTTTTTCCTGAGAAT 100 53
   Dhaf_1151 1245978 .. 1246015 +  -9.2  -3.31726   GCGGTAAGACAGAAA   GTCCACGGCTTTCATCT CAGGA AGA-GGGCGCCGTGGAC   TATTATATCAGGGGG  74 133
   Dhaf_1152 1246917 .. 1246973 +  -5.9  -3.21276   ATAAAATCATGAACC TTTAAGCAAGGGGGACTGAGAGC AGGTTAAGGGG GCTCATGGTCCTCCTTGCTCACA TCTTATAGAGAAACC  55 75
   Dhaf_1155 1250327 .. 1250357 +   -12    -4.788   TGAAAGTTGAAAAAA      GCGGCTGGTCACA ATCCAA TGTGAC-AGCCGC       TTTTTCGGTTAATTT 100 77
   Dhaf_1164 1258660 .. 1258679 + -12.2   -5.0925   GACCCCTGGTATACG            CTCCACTG GCAA CAGTGGAG             TTTTTGCTTTTCAAC 100 39
   Dhaf_1166 1261353 .. 1261380 + -14.8  -4.11216   ATTAAGAAGAGTTCA        GAGACGCCGGCC AATA GGCCGGCGCTTC         TTTTGGGCATGGAAA 100 36
   Dhaf_1167 1262289 .. 1262318 +  -2.7  -5.61689   AAAAATTTTCAAGCA       GTGCTGTGATTCC AAGG GGAAGGGCGGCGC        TTTTTTGTTGCTTTT  84 75
   Dhaf_1168 1263148 .. 1263161 +  -2.3  -3.36273   AATAATATTCTGTTT               CCCAG ATAT CTAGG                TTAATCTTACGAGCA  45 8
   Dhaf_1169 1263450 .. 1263483 +  -3.8  -5.92399   TAAGGGAAATGGACT     ATAGGGTCACGGGC TATTAT GTCCGTGACTTTGC      TTTTTTGTTTTATTA 100 58
   Dhaf_1170 1264893 .. 1264945 + -23.9  -4.58773   TTCACAGATCAAAAA TTCGGCCGTTTTG-GATTGACTCA TCTAGC TGAGTCGATCTCAAAACGGCCGAA TTTTCATTTAGTCCA 100 73
   Dhaf_1179 NONE
   Dhaf_1180 1277657 .. 1277706 + -10.9  -4.35693   TAGGAAAAGATAAGA TAAGGCAGAGCGTGAGGCGGTCC GGGCAG GGATCGTCTCACGCTC--CCTTC TTCTTTTATCACTTT 100 45
   Dhaf_1181 NONE
   Dhaf_1182 1280454 .. 1280479 + -16.3  -2.53822   GTGCTATAATAAAGC         TACAGGTGGAG TAAT CTCCACCTGTA          ATGTTATGCACTAGG 100 81
   Dhaf_1183 NONE
   Dhaf_1184 1281441 .. 1281474 + -17.7  -5.95539   ACTATGCTGATTTCA     GATATCGACAAGGAG ACTC TTCCTTGTCGATATC      TTTTTTTGTTTAGAG 100 83
   Dhaf_1185 NONE
   Dhaf_1186 1283031 .. 1283060 + -11.5  -4.52589   GGGAAGCCCGATCAA       GACCGATCTTTAC TTGA GGAAGGATCGGTC        TTTTCTGTCGAAAAA 100 55
   Dhaf_1187 1284358 .. 1284396 + -14.8   -5.8096   CTCCGGAAATAGTAA   TCCCCCTGGATTGA CTCTTGTCTGC TCAATCCAGGGGGA   TTTTTGTTTTTTATG 100 57
   Dhaf_1192 NONE
   Dhaf_1193 NONE
   Dhaf_1194 1291118 .. 1291150 + -17.9    -5.252   GGAATTATATAAAAA      TAATCGCTGTCGGGG AAA TCCTGACAGCGATTA      TTTTTTGTCAGGATA 100 29
   Dhaf_1195 NONE
   Dhaf_1196 NONE
   Dhaf_1197 1295799 .. 1295810 +  -4.4  -5.19879   CACCATCGCTCCAAT                CCAT ATCC ATGG                 TTTTTATCTTTCAAA  78 110
   Dhaf_1198 1296557 .. 1296576 +  -9.3   -4.3739   AGCTTGTAAGTAAAA            GGAGACC CACTTA GGTCTCC             TTTTATCAAGAAGTG  88 39
   Dhaf_1200 1297568 .. 1297585 +  -2.8  -3.05844   TTTTTTGCTCCAATA             TATCAA AATAAA TTGATA              TGTTGGAATAAAGCG  43 46
        arsM NONE
   Dhaf_1202 1299033 .. 1299043 +  -2.6  -3.80733   GGGAGTAATGATATA                 TATT ATA AATA                 TTGTTATGGAGTGAA  52 162
   Dhaf_1203 NONE
   Dhaf_1204 NONE
   Dhaf_1205 1303016 .. 1303026 +  -3.2  -3.09732   TTTTACCAAGGTGTT                 TACC CAG GGTG                 CTTTTCGGGTGATTG  46 46
   Dhaf_1206 NONE
   Dhaf_1207 NONE
   Dhaf_1208 1307604 .. 1307635 +  -8.6  -2.64155   CATAAGTAATATTCT      AGAGGAGCCAGGGC ACTC GCTCTGGCTCCATG       TCCCTTTCGGAAAGA  63 36
   Dhaf_1209 1308459 .. 1308484 +  -6.2   -3.1875   ATAATCTTTATTGAA         CCATCCTC AATTAGTAGC GAGGATGG          TTCAATTGACATATC  57 129
   Dhaf_1210 NONE
   Dhaf_1211 NONE
   Dhaf_1212 1310499 .. 1310517 + -14.6  -3.44936   CATAGACGGGGATGT             CGCACACC GCT GGTGTGCG             TTCATCTTCCTTTCT 100 92
   Dhaf_1213 1311524 .. 1311563 + -25.2  -5.24449   GAAGAGAGAAGGAAA  GCCCCTTGCTCCGAATCC TATT GCATTCGGAGCAAGGGGC   TTTTTTCAATTTGTC 100 58
   Dhaf_1215 1312986 .. 1313019 +  -4.5  -5.37865   TGCCTCCTTAATCAT     AGACGCCTCCTGT ACATAACC GCAGGAGGCATCG      TTTTTTAGTTATTGA  82 52
   Dhaf_1216 1313521 .. 1313536 +  -2.6  -2.80816   TATCTTATGTGGAAA              TTAACT GGGA GGTTAA               TCTAATGGGTGAGAA  42 60
   Dhaf_1217 NONE
   Dhaf_1218 NONE
   Dhaf_1219 NONE
   Dhaf_1220 1316379 .. 1316399 +  -8.3  -4.18197   ACGGATATGAGAAAA            GAGACCG TACACAC CGGTCTC            TTTTCAGTAAAGGCT  79 54
   Dhaf_1233 NONE
   Dhaf_1234 1329640 .. 1329669 + -16.4  -3.03159   ATGAGCAGAAAAACA       CCCCGCTCCCGG GCTGGA CCAGGAGCGGGG        TGTTGAGCAGCTTGG 100 61
   Dhaf_1236 1331473 .. 1331511 + -19.9  -5.42259   TTAAAGAAGCTTAAA  CAGGCTGTGG-AAACGAT ACGT ATCGTTTTCCACAGCCTG   TTTTTTTAACCATAA 100 65
   Dhaf_1237 NONE
   Dhaf_1238 1333308 .. 1333321 +  -2.3  -4.27117   AGTTTATATAGTTTC               GTCGG CCTC CCAAC                TTTGTATTCTAAAGA  58 322
   Dhaf_1241 NONE
   Dhaf_1242 NONE
   Dhaf_1243 NONE
   Dhaf_1244 NONE
   Dhaf_1245 1341165 .. 1341219 +  -7.9   -4.3467   ACTTATATCTGGAAA CAGGGCTGCCGGCGA-AGCCATATTT GATT AAATCAGGTTGTTTGCGGCAGCCCTG TTTTCATGTCGGACT  79 57
   Dhaf_1246 NONE
   Dhaf_1247 1344633 .. 1344683 + -12.8  -5.45652   AGCATAAATAGTCGG TCTCAGTTATGTATGCCAGGTT CAGGCAA AGCCGGCCATACATGACTGAGA TTTTTTATTGAGCCT 100 75
   Dhaf_1248 1347099 .. 1347143 + -17.4  -3.44274   AAGCCGGTTTAAGCT ATAGAACTGAAAATGGGCCT GTAAA GGGCCCATTTTCAGTTCTGG TTGATCTTATAATTA 100 22
   Dhaf_1249 1348564 .. 1348619 + -11.3  -4.16016   TTAAGCAGTGAGCCG TCACAACGATTTTGGGGTGGGAAGT GTTCCG ATTTCCCATCCCGGAAGTGTTGTGC TTTATTCGGAAGTGC 100 30
   Dhaf_1250 NONE
   Dhaf_1251 NONE
   Dhaf_1252 1351300 .. 1351334 + -15.1  -5.18726   AGCAGAACAGAAAAA     CACCCATAAAGGGCC AAGGC GGCACTTTGTGGGTG     TTTTTGTTGTCCAAA 100 55
   Dhaf_1253 NONE
   Dhaf_1254 NONE
   Dhaf_1255 NONE
   Dhaf_1256 NONE
   Dhaf_1257 NONE
   Dhaf_1258 NONE
   Dhaf_1259 NONE
   Dhaf_1260 1359479 .. 1359499 +  -7.6  -4.33653   GATTTAGCACCATGA            GGCTGACA GAAAA TGTTAGCC            TTTAATTTTTACATA  79 170
   Dhaf_1261 1360529 .. 1360546 +  -4.2  -3.21276   TTCGCTAAGCAGGCC             TAAACC AAATTG GGTTTA              TGTTATAGAGGAGGC  49 73
   Dhaf_1262 NONE
   Dhaf_1263 NONE
   Dhaf_1264 1362114 .. 1362138 + -10.7  -4.81359   AACCCAGAACTCTAA          GGGGAATTGCC GGC GGCAACTCCTC          TTTTATATTTGAATT 100 43
   Dhaf_1265 1363795 .. 1363810 +  -3.2     -2.89   GAAATTGGCAGTTCG              GCAAAG GGGT CTCTGC               TAATTATATGCCGAT  43 7
   Dhaf_1266 NONE
   Dhaf_1267 NONE
   Dhaf_1268 1365815 .. 1365827 +  -3.3  -2.79823   AAAAAGATGTTGGAG                CTGAC TCT GTCTG                ATTAATTTTCCAGGA  43 8
   Dhaf_1269 NONE
   Dhaf_1270 1367613 .. 1367647 +  -9.3  -5.93252   ATGAACCTGCCTTAA     CACCATGGAGGTCGT TAAAT ACGTGCTTCATGGTG     TTTTTTATTTTTGAG 100 220
   Dhaf_1271 NONE
   Dhaf_1272 NONE
   Dhaf_1273 NONE
   Dhaf_1274 NONE
   Dhaf_1275 1372853 .. 1372873 +  -9.7  -4.41047   GAGGGCAATAAAAGA            CCGAGGC CATGGGT GCCTCGG            TTTTCGTTAACCCCT  93 88
   Dhaf_1277 NONE
   Dhaf_1278 NONE
   Dhaf_1279 NONE
   Dhaf_1280 NONE
   Dhaf_1281 1379940 .. 1379975 +  -9.2   -4.9725   TACAATACCTTATTT    AAATCCTGCTTTCT TCAGTCTT AGAAAGCAGGATTC     TTTTTCTATAACACT 100 70
   Dhaf_1282 1380912 .. 1380940 +  -3.2  -3.86795   ACCTGTTTTACGCCG       GTGCCAT-A-CCCA TCA TGGGATGAAGGCAC       TTTGGTCAATTTTTT  53 3
   Dhaf_1283 1381522 .. 1381548 +  -2.2   -3.0127   TATCAATTTCCAATA         AGCAGAGTTTAA GTT TTGGCCTCTGCG         TGTATGATTACCTGA  42 25
   Dhaf_1284 NONE
   Dhaf_1285 1384082 .. 1384105 +  -6.8  -5.75342   CGTTCTCGTAAGAAA          TACTTGCTAT ATTA AAAGCAAGTA           TTTTTTTTGCGAAAA 100 119
   Dhaf_1286 NONE
   Dhaf_1287 NONE
   Dhaf_1288 1385314 .. 1385324 +  -2.4   -3.4582   GAGCTGACCGTCTGC                 CGGC AAT GCCA                 TGTTTAATCAGATAA  47 8
   Dhaf_1289 NONE
   Dhaf_1290 1389122 .. 1389175 + -15.7  -3.36878   TAAGTGTTTATAAAC TCAAACAGGAGCTTTTCAGCA GATCCACGAAGA TGCTGAAAAGCTCCTGTTTAA TTCTACATCAATGGG 100 77
   Dhaf_1292 NONE
   Dhaf_1293 1393234 .. 1393268 + -16.7  -3.66654   TCTCCAGGTAGAAAA    CAAGGACTGGTGATGT TTTG ACATC-CCAGTCCTTG     TTTGGCGTTAAGCTG 100 30
   Dhaf_1294 NONE
        cbiD 1395505 .. 1395526 +  -3.7  -3.01924   ATCCGGCGCGGTCCC           GCCACT-GTG AAC CACGAGTGCC           TCTTAAGGCCCACTG  46 132
   Dhaf_1296 NONE
   Dhaf_1297 1397965 .. 1397979 +  -4.2  -4.61527   TCCTGTTTCCAACCC               GACTCC GCT GCAGTC               TTTTTGCGAAGTTTT  68 187
   Dhaf_1298 1398986 .. 1398996 +  -2.4  -3.35679   TTTACTCATGAATAC                 CGGC AAG GACG                 TTCTACATGAAAACA  45 5
   Dhaf_1299 NONE
   Dhaf_1300 1400833 .. 1400843 +  -2.4  -3.22886   GTCCTTATATGGTGA                 CCCC CAG GGGA                 TATATTCTATGAGAT  43 3
   Dhaf_1301 NONE
   Dhaf_1302 NONE
   Dhaf_1303 NONE
   Dhaf_1304 NONE
   Dhaf_1305 1405266 .. 1405284 +  -2.3  -4.88918   CGCTCAAGCTCTCCG             CTGCGTG CTTTT CGCGAAG             TTTTGTTTCCGCTCG  66 130
   Dhaf_1306 NONE
   Dhaf_1307 NONE
   Dhaf_1308 NONE
   Dhaf_1309 1410111 .. 1410133 +  -3.6  -2.78049   TGGACGTATTGATTT           TTTAGATTTA TAA TAAATATAAA           TAGATTTTCGTACAT  45 213
   Dhaf_1310 NONE
   Dhaf_1311 1412647 .. 1412667 + -13.3  -4.78752   TAATTTTAGGGGGAT            GGGGCAAGG GAT TCTTGCCCC            TTTTTAAATTATGCT 100 102
   Dhaf_1312 NONE
   Dhaf_1313 1416172 .. 1416182 +  -3.2  -5.63012   GGCTATTGAAGCTGG                 GGTG TGT CATC                 TTTTTATTTATTTTT  86 32
   Dhaf_1314 1417852 .. 1417898 + -10.4  -4.36931   GATACAAAACAGAAA CTCCCGATGGAAA-GGTCTATG TGAGT CACAGACCATTTTCA-CGGGAG TTTTAATCTACCTTA 100 89
   Dhaf_1316 1421009 .. 1421053 + -13.9    -3.322   AATATAGAATAGTAG GAAAGACTGTAAGAGGT ATGAATGAAGC GCCTCTTACAGTCTTTC TTAGTATATCGGAAT 100 59
   Dhaf_1317 1422236 .. 1422272 +  -8.7  -4.75518   TTTTTCAAAGTTGAT    GGAGCATTGCAGAGTCT TAA AGGTGGTGCGATGCTCC    TTTTAATTTTCTCTG 100 64
   Dhaf_1318 1423284 .. 1423295 +  -4.4  -3.67877   ATTAGAGGCAAATCG                TAGC GGAT GCTA                 TCTTTATTAAACAAT  54 51
   Dhaf_1319 1423896 .. 1423929 +    -9   -5.0916   GTTTTTTAGCTAAAG     GTAGGCCTACCCTTT TGGCC AAAGGGAAG-CCTAC     TTTTTGTATTAAGGG 100 72
   Dhaf_1321 1427161 .. 1427179 + -11.7   -5.4251   GAAGAAACTAGTTAA             GGAGGGG GATTG CCCCTCC             TTTTTTCTGTCTAAA 100 99
   Dhaf_1328 1438633 .. 1438665 +  -9.2  -5.08601   GCTTTTAAAAAAGAT      AGCCCAACAGATGA AACCA TTGTCTGTTGGGCA      TTTTTATTCGCATAG 100 62
   Dhaf_1329 1439600 .. 1439639 +  -9.5  -4.27512   ATTGCACTATGAAAA TGCTCCCT-GAGAA-GAGG TAAA CCTGATTCTCCAGGGAGCA  TTGTTTGTTATCAGC  88 53
   Dhaf_1332 1440981 .. 1441010 + -15.2   -4.4261   AATCTGGCGAAGCTA       TAAAGCTAGCGG AAATCC CCGCTAGCTTTA        TTTTGCTATTGAAAA 100 54
   Dhaf_1333 NONE
   Dhaf_1334 NONE
   Dhaf_1335 1443863 .. 1443882 +    -5  -3.64103   GAGTTCTGAGGGCAG            GCGCTA AAGAGAGA TAGCGC             TTTAGGCTGTCGGTA  57 190
   Dhaf_1338 NONE
   Dhaf_1339 NONE
   Dhaf_1340 1448067 .. 1448089 +  -2.6  -4.53303   ACGGCGAAGCAACAA           GTGCGAAAGC AGT GCTTTCGGGG           TTTTCTATAAAGATA  61 132
   Dhaf_1341 NONE
   Dhaf_1342 1451226 .. 1451249 +  -6.1   -4.2704   TCCGTTAAGAATCGT          GGAACCCATG CCGAC CATGG-TTCC          TTTCTTAATGGTACA  69 442
   Dhaf_1344 1452842 .. 1452869 + -17.1  -4.67048   CTAAGTAAGAGCCTG        GCAGGGAACGG CGAAGT CCGTTCCCTGC         TTTATTTTCAAGTAG 100 33
   Dhaf_1345 NONE
   Dhaf_1346 1455163 .. 1455176 +  -2.4  -2.82193   TTGAGAGTATATCAT               TGAG GCTATA CTCA                TATAATAGATATAAT  41 52
   Dhaf_1347 NONE
   Dhaf_1348 1456038 .. 1456064 + -13.8  -5.31855   AGATAAACACAGCGG         CAGCGTTGGTCG GAA CGACTAATGCTG         TTTTTATTCTTCATC 100 72
   Dhaf_1349 1457019 .. 1457065 + -19.8  -3.49475   GGCTGATTAGTCAAC TAAAGGCCCTATGACATTAGTG AAA TACTGATGTTATGGGGCCTTTA TTATATAACCATGAA 100 134
   Dhaf_1350 NONE
   Dhaf_1351 NONE
   Dhaf_1352 1460235 .. 1460276 +  -3.9  -5.58522   TTGACCAGTAAACTG GAGATTAAGCA-GGACCTTA TCT TAAGGTATATACTTGATCTC TTTTTCTTTTGTGTA  89 97
   Dhaf_1353 1461228 .. 1461243 +  -3.2    -4.614   GTCGGGGGAAATGCT              GCGG GGATTTAG CCGC               TTTTATCTGATTAAG  65 14
   Dhaf_1354 NONE
   Dhaf_1355 NONE
   Dhaf_1356 NONE
   Dhaf_1357 NONE
   Dhaf_1358 NONE
   Dhaf_1359 NONE
   Dhaf_1360 1468511 .. 1468569 + -20.2  -3.66018   CCTTTGGCAGGGGTG ---AATCAGGGGGACAGGTACCATTATTC ATCT GAATAATGGTACCTGTCCCCCTGATTCAC TTATTGAAGTCCTAG 100 48
   Dhaf_1362 1471736 .. 1471768 + -11.3  -4.96848   AATCTATAAATATGA      GCGTCTGCCCC AACCAAGTCAC GGGGCAGGCGC      TTTTTCTATCGGCAA 100 48
   Dhaf_1369 1477346 .. 1477360 +  -2.1  -3.76968   AAGGGATCCTGGATG              C-CTGG AAGC CCAGAG               TTTAGTCAATAGCTT  51 6
   Dhaf_1370 NONE
   Dhaf_1371 1479306 .. 1479318 +  -2.7  -2.89742   AATTTTGCTTACTTC                TATCT CGG AGGTA                TATATGACACTTAAC  42 43
   Dhaf_1372 1480471 .. 1480504 + -12.6  -3.73914   TAGCTTAGTGCAGTG     TAGAAGGGGAAGCC CAAAAA GGCTTCCTCTTTTA      TTATTAATAAATAAT 100 38
   Dhaf_1373 1482381 .. 1482425 + -19.6  -4.38927   GTCAGAATTCCCATC G-ACAAGCACTGAATGACGAG AAAG CTCGTCATTCAGTGCTTGCAC TTTATTCTGTACAAA 100 42
   Dhaf_1374 1482954 .. 1482964 +  -5.4   -2.9838   ACGTGAGCAATGGAT                 TTGC CCG GCAA                 TAATTCATTTTTAAC  52 35
   Dhaf_1375 NONE
   Dhaf_1376 NONE
   Dhaf_1377 NONE
   Dhaf_1378 NONE
   Dhaf_1379 1485563 .. 1485574 +  -2.2  -2.80816   TGCCTTGACATCTAC                GTAG CAAC CTGC                 TATGATACATACCAA  41 42
   Dhaf_1380 1486267 .. 1486303 + -14.8  -2.78211   TCCCAAAAATAGAAG    TAGCTATTCTTTACAA ATGGC TTGTAGAGAATAGCTA    ATATTTTGAAAACAT 100 29
   Dhaf_1381 NONE
   Dhaf_1382 1488857 .. 1488869 +  -7.7  -3.50853   GCAAACGTCCAAAGC                GAGCT GCA AGCTC                TTCTCCTTGAACCAC  66 513
   Dhaf_1384 NONE
   Dhaf_1385 1491405 .. 1491428 +  -6.7  -5.03405   AAATATGACACATAA          GCTCTTCCT GGAATA GGGAAGGGC           TTTTTATATGCTCTT  86 252
   Dhaf_1386 1492574 .. 1492597 +   -11  -4.84363   TATAATGGAATTAAA          GCGAACTGGT TCAG GCCGGTTCGC           TTTTTGATGATTTCC 100 75
   Dhaf_1387 1493640 .. 1493660 +  -3.2  -4.36595   TCAGGATAGTTTTAA            GCAGGTCT CTAGT GGGCTTGC            TTTTCACTTTCCCTA  61 89
   Dhaf_1388 NONE
   Dhaf_1389 NONE
   Dhaf_1390 NONE
   Dhaf_1391 NONE
   Dhaf_1392 NONE
   Dhaf_1393 1500002 .. 1500047 +   -28  -3.02471   TGTCAGTAGGTTGAC GAGGCTGCTGCAAATTTCCA AGCGCC TGGAAATTTGCAGCAGCCTC TATATGTAATGCGGG 100 69
   Dhaf_1394 NONE
   Dhaf_1395 1502142 .. 1502158 +  -7.3  -3.87149   TGAACAGGGTGCCAT              GCGTTTT AAG GAAACGC              TTTGAATTTAGTGGA  70 4
   Dhaf_1396 NONE
   Dhaf_1397 NONE
   Dhaf_1398 1507197 .. 1507235 + -15.5  -3.23274   AAGCAATAAAGAAAA  CT-CGCCTCAGGTGGAGT GTCG ACTCTATCTGAGGCGTAG   TTGACTTATCCGCGG 100 44
   Dhaf_1399 1508390 .. 1508422 +  -9.1  -4.77775   TCTGTAGGGTATGCG      GGAGCTCCGCGGTTT TAC AGACCGTGGGGCTTA      TTTATTTTGTGGAAT 100 351
   Dhaf_1400 NONE
   Dhaf_1401 NONE
   Dhaf_1402 NONE
   Dhaf_1403 1510891 .. 1510910 +  -7.2  -3.07431   CCAGCGAGTGTGCTG            TGCCTGTT CACC AATAGGCA             TCTTCAGCGTGTTTT  62 9
   Dhaf_1404 1511913 .. 1511949 +   -16  -3.28924   ATAAAAGAATGAGAA    GAAGGGGTATCTGGCC GGGAG GGCTGGATATCCCTTC    TTCTAAGGCGCCGTG 100 81
       groES 1512537 .. 1512556 +  -2.1  -4.26351   TTTTAGCGGTTATTG            GCTAAGA TAATAC TCTTTGC             TTTATTCACTTAATG  58 21
       groEL 1514308 .. 1514361 +  -9.8   -4.6526   AAATGCCTGAAATAA GTGAGACTCGTGTT-GCGATG-TGGC TATA GCCAATTTTGCTAACACGAGTCTCAA TTTTTAGAGGTTTCT 100 58
   Dhaf_1408 NONE
   Dhaf_1409 1516345 .. 1516372 + -10.6  -3.03798   TATTATGGTATCAGT        GAAAGGCGTCAA GAGA TGGGCGCCTTTC         CTTATTTATAGGAGT  76 79
   Dhaf_1410 NONE
   Dhaf_1411 NONE
   Dhaf_1412 NONE
   Dhaf_1413 1518613 .. 1518624 +  -2.2  -3.05816   TTGAAAAGATTTATG                TTCG TGTG CGGA                 TTAAATAGAAAGTGC  42 6
   Dhaf_1414 1519187 .. 1519211 +  -9.3   -3.7645   AAGGAGAGTTTTAAA          GGAGATCAGCA GTA TTCTGGTCTCC          TTCTCTTGCTTGCGT  81 93
   Dhaf_1415 1519685 .. 1519735 +  -6.2  -2.71785   AGAAGCAAAAAACTA ATTGAGGAGGGCGATGGTGAGGCG AATTA CGCTT-ACTA-CGCCCTCCACGAG CTTCATATTTTACCC  54 25
   Dhaf_1416 NONE
   Dhaf_1417 NONE
   Dhaf_1418 1523355 .. 1523365 +    -4  -3.09784   AGCCTGGGAAGGTGA                 TAGA ATG TCTA                 GTTTATTGGACCTAA  49 52
   Dhaf_1419 NONE
   Dhaf_1420 NONE
   Dhaf_1421 NONE
   Dhaf_1422 NONE
   Dhaf_1423 NONE
   Dhaf_1424 1527743 .. 1527768 + -10.5  -3.14881   ACATATTCCTTCATA         TGAAGAGTTGC AACA GCAACTCCTCA          TTAGTCAGGGGGTTA  77 273
   Dhaf_1426 NONE
   Dhaf_1427 NONE
   Dhaf_1428 1529171 .. 1529191 +  -4.1   -2.9006   TAATTGCACAGGGGG            TAATTTAAC ATG GTTGAGTTA            TATGTGAAGTGGCTT  46 18
   Dhaf_1429 1529349 .. 1529366 +  -2.6  -5.34555   TGCAACACCAACACT             AACGCC ACACAG GGCGTA              TTTTTTATGCTCTAA  76 51
   Dhaf_1430 1529799 .. 1529818 +  -5.7  -3.30124   TAGAGCCGGGCGCAA            TGGCC-GC AAGCC GCTGGCCA            TTGTGGCCCATACCA  57 81
   Dhaf_1432 1530665 .. 1530682 +  -2.7  -4.92239   GATAAGACTTAAAAT             CATCTCT TAAT AGAGATA              TTTTTCGCTTTTTCG  70 36
   Dhaf_1433 1531561 .. 1531597 +  -5.3  -5.26316   CGGCAAACCAGACCA   GACCTCAC-AG-GGTTC AGAAA GAACTTCTTGTGGGGTC   TTTTTTCTCAAATAG  84 186
   Dhaf_1434 1532332 .. 1532360 +   -14  -5.60993   AAACCTAAAAAAGTG        CTGAGGATCACG TATTT CGTGATTCTCAG        TTTTTTTATAGAAAA 100 39
   Dhaf_1436 1533838 .. 1533872 +  -9.5  -4.41177   TAATTTGTGTCAGCG    GAAAGAGGC-TTCTGA GAAT TTGGAAGGCCTCTTTC     TTTTAACTTTCTCTC  95 80
   Dhaf_1437 1534579 .. 1534603 + -10.8  -4.12456   GCATGAACAAGAATA         GAGCTTCGGCA GATT TGCCG-AGCTC          TTTTAAGCATACTGT  93 55
        guaA 1536254 .. 1536295 +  -6.7  -4.75967   TTTAAGTATTTGATG GTGGTTATGATTTCAGCC TGTTTTT GGC-GTTATCATAACCAC TTGTTTTTTGTCGTT  82 86
   Dhaf_1439 1537313 .. 1537345 +  -6.3  -5.27335   AAGATTAAATCTGAA      GAAGTGTCCATTC ACAAAAA GAGTGGCCGCTTC      TTTTTATTTAAAGAA  89 39
   Dhaf_1440 1538234 .. 1538245 +  -4.4  -2.71483   TGATTCGATTTAAAA                CCTT TCAG AAGG                 TCATTAAAACGCTCT  45 140
   Dhaf_1441 NONE
   Dhaf_1442 NONE
   Dhaf_1443 1539484 .. 1539494 +  -6.8  -2.71268   AGCAAGAAGGTGGGT                 GGTG AAA CACC                 TAGTATCTCATCCCC  56 21
   Dhaf_1446 NONE
   Dhaf_1447 1541952 .. 1541972 +  -2.5   -4.1822   TTATAAGCTACGACA            TGACCAGTA TAT TTCTCGTCA            TTTATTAGGATAGCC  57 353
   Dhaf_1448 1543820 .. 1543839 +  -2.2  -4.64766   GAACCTTTCAAACCC            TTGAAATT CAAT AGTTTCAG             TTTTTGAGGTGTCAA  63 67
   Dhaf_1452 NONE
   Dhaf_1453 1546793 .. 1546803 +  -2.6  -2.64298   CAGGTGCCCCTTTTC                 TTTT CAC AAAA                 CTCCTTTTTTGATAG  41 90
   Dhaf_1454 NONE
   Dhaf_1455 NONE
   Dhaf_1456 NONE
   Dhaf_1457 NONE
   Dhaf_1458 1551092 .. 1551115 +  -6.1  -5.47159   TTACAGCTTGAATTA          GAACTTCTT TAAATT AGGAAGTTC           TTTTTTATATTCAAA  91 14
   Dhaf_1459 1552290 .. 1552319 + -10.9  -3.57918   TAAGGAGAGGTAAGA       GGAAGGGAGAGCTA ATT TA-CTCTCCCTTTC       TTCTATGATATAGGT  84 38
   Dhaf_1460 NONE
   Dhaf_1461 NONE
   Dhaf_1462 NONE
   Dhaf_1463 NONE
   Dhaf_1464 1554329 .. 1554352 +  -9.6  -4.54727   GTAATAGAATTTTGG          GGAGTGTCTA ATAT TGGGCACTCC           TTTTCATTTGAAAAA  95 43
   Dhaf_1465 1554751 .. 1554787 +  -9.7  -4.41956   CAAAAAACTAGATAA   CCAGTCAGAATCTGAG GAATGG CT-AGATTTTGACTGG    TTTTACTATGTCTCT 100 30
   Dhaf_1466 1558627 .. 1558663 +  -6.5  -5.71983   GGAGTAAGAATGGAA    AAGCCGGAAACCCGT ATGAATA AAGGGTTGCCGGCTC    TTTTTTTGTCCTTGG 100 394
   Dhaf_1469 1561643 .. 1561674 + -14.6  -4.25325   AACGAGGAAATTTTA      GGGCTCCTTAACACG GAT TGTG-TAAGGAGCCC      TTTGGTTTATTCTGT 100 40
   Dhaf_1471 NONE
   Dhaf_1472 1568322 .. 1568342 +  -4.7  -3.67183   GGGCGAAGCAACAGG            TGTGAAAGC AGT GCTTTCAGG            GTTTTCTTTATTCTA  57 119
   Dhaf_1473 NONE
   Dhaf_1474 NONE
   Dhaf_1475 NONE
   Dhaf_1476 1573004 .. 1573021 +  -2.7  -2.75064   GAAGGAGTGAGTTAT             CTTTGAT GCGG ATCGGAG              TGCTTGCGTCAGGGC  42 20
   Dhaf_1477 NONE
   Dhaf_1478 1575232 .. 1575242 +  -4.6  -4.07885   AGTATAGCTGTCATG                 TCGC TGT GCGG                 TTTTGGCAGAGAGTG  63 40
   Dhaf_1479 NONE
   Dhaf_1480 1577290 .. 1577301 +  -4.4    -3.214   TTCCTCCTGTGACCT                TAGG TTGT CCTA                 TCTTCATATAATGAA  49 49
   Dhaf_1481 1577964 .. 1577991 +  -5.7  -5.52986   AAATTTGAAAATGCA        AAAAGAAGCTT ATCCCC AAGCTTCTTTA         TTTTTTTACTAAAAT  90 89
   Dhaf_1482 1579918 .. 1579932 +  -7.1  -3.17075   AGGTTGCGAATAATT               TGCCC TAAAT GGGCA               TTGCCTTCGCAGGCC  60 510
   Dhaf_1484 1580801 .. 1580827 +  -2.9  -4.59089   GCATAGCAATGAGAA        AAGCCG-CCCTC AGCT GAGGAACGGCTC         TTTCTTTATGAGTTG  64 69
   Dhaf_1488 NONE
   Dhaf_1489 1585628 .. 1585679 +   -12  -3.75378   GTGTAACTTAAGTTT TTGAGACCAAATATATGTTTAG TAGTTGAT CTGAACATATGTTTGGTCTTAG TTATATTATGACAAT 100 202
   Dhaf_1490 1587117 .. 1587158 + -24.7  -3.82084   CGGTATTGATTTTAG CATGTCCCAGAACACGACA ACGT TGTCGCGTTCTGGGACATG  TTGTTACTCTTACAG 100 383
        hisG 1587990 .. 1588018 +    -3  -3.06796   AGGCTGCGTCAGCTT        CTCGGCAGAGCT CCTTA AGCTCGGGAGAG        TTGGCTAAGATGGAG  44 8
        hisD NONE
   Dhaf_1493 NONE
   Dhaf_1494 1591048 .. 1591065 +  -2.7  -2.64099   AGGAGGTCTTTTTCG             CTATGAT AGGA ATCATCG              ATTATGGTCGCGGAA  41 40
        hisH NONE
   Dhaf_1496 NONE
   Dhaf_1497 NONE
   Dhaf_1498 1593940 .. 1593977 +  -3.5  -5.63504   CAGGCACACAAAGAA  TCCTTGCAAAGGGGAGC GCGAAG GCA-CCC-TTGCAGGGA   TTTTTTTGTAGGGTT  89 42
   Dhaf_1499 NONE
   Dhaf_1500 NONE
   Dhaf_1501 NONE
   Dhaf_1502 1597318 .. 1597355 + -14.9  -5.35354   AAAGTAATCGAAAAA   CAGCGGGTAAGGGTTCCC AAG GGGATTCCT-GCCCGCTG   TTTTTTAATTGTGTC 100 66
   Dhaf_1503 1598980 .. 1599007 + -11.4  -4.76087   AGAATACTAAGACCA        TGAAGAAGCGGT TTCG GCTGCTTCTTCA         TTTCTTTCTTCTATA 100 54
   Dhaf_1504 1600202 .. 1600236 + -12.3  -3.90922   GAAAGCAAATGACAA    CAAGAGGGCATCTCAA TAAT TGGAGA-GCCCTCTTG     TTCTTTAAGGGAAAT 100 29
   Dhaf_1507 1603236 .. 1603265 + -13.7  -5.47218   ATAAAGCTTAGAAAA       GGTGAAG-GCAGGC ATA GCTTGCGCTTCACC       TTTTTTTAAATCAGC 100 58
   Dhaf_1508 NONE
   Dhaf_1509 NONE
   Dhaf_1510 NONE
   Dhaf_1511 NONE
   Dhaf_1512 1609240 .. 1609258 +  -3.1  -3.64703   GGTTTCTGAATTAAA             TTGGCTC ATTAC GAGTCAG             TTTAAATAAAAAAGG  51 27
   Dhaf_1513 1610290 .. 1610327 + -18.6  -3.05844   TGTAACATTTATGGC   TTAAACAGGCCGCCGT TCAACT ACGGCGGCCTGTTTCA    TGTTAAGCTGAAAGG 100 135
   Dhaf_1514 1612670 .. 1612680 +  -5.4  -3.91084   GGCGGAATATGCCAG                 GCTT GTT AAGC                 TTTGATTGGGAATGC  63 10
   Dhaf_1515 1614688 .. 1614706 +  -2.3  -4.90525   TCCAACCCGACTCCG             CTGCGTG CTTTT CGCGAAG             TTTTGTTTCCGCTTG  70 320
   Dhaf_1517 1617349 .. 1617373 +    -5  -4.30995   GTAATATACATTTTG          GGGTTATAGT ATTAA ACTCTAGCCC          TTATTTTGTACAAAG  66 90
        gatC NONE
        gatA NONE
        gatB 1620737 .. 1620770 + -13.3   -4.1552   AGATTTGCTTGAAAA     GCTTCCTTTCC-GGAC ATG GTCTTGGAAGGGAAGC     TTTATTAGCGAGATG 100 64
   Dhaf_1521 1622135 .. 1622149 +    -7  -5.18297   AGTATGCGTTTAAGG               CACGGC GAA GCCGGG               TTTTCTTTATTATTC  88 171
        aksA NONE
   Dhaf_1523 1624671 .. 1624712 + -13.2  -2.80245   GCCCATAGGCCAAGA GGAAAGGTTCCCCTATCTC TGCCT GAGATAAGGG-GCCTTTCC CTTATCTTAGGATGA  91 33
   Dhaf_1524 NONE
   Dhaf_1525 1627626 .. 1627642 + -13.7  -5.32944   TGTATGTGTATAAAA              CCGAGGC TGG GCCTCGG              TTTTTTGGTTGTCGG 100 52
   Dhaf_1526 1628532 .. 1628562 + -13.9  -5.00616   AGAAATAAAGCAAAA       GCTGGCAGCCGCG AAGAA CGTGGCAGCCGGC       TTTTTTGCAGAAAGG 100 416
   Dhaf_1527 1630146 .. 1630174 +  -3.3  -3.36968   TATGCTCCGAAATTC        TGTTAGTCT ATTCTATTTTC AGACTAACA        TTATGAAATTAACTC  47 53
   Dhaf_1528 NONE
   Dhaf_1529 1632176 .. 1632186 +  -4.6  -3.76402   AGACCGTCTGGGGAA                 CCGG CTA TCGG                 TTTAATCCGTAAAAT  59 3
   Dhaf_1530 1632559 .. 1632598 + -10.8  -2.70946   AACGAAACCATGTGA  AATGCCCCAAATTTCCAA GCGC TTGGAAACTTGGGGCAAG   ATATTTATCAGAAGG  76 117
   Dhaf_1531 NONE
   Dhaf_1532 NONE
   Dhaf_1533 1637138 .. 1637192 +  -9.9  -2.80016   TAAGTACGGTTCGGG GGC-GAGCATCCGGAAACCTGCCGCA GCAA TGCGGCAAGGCGCTGGGTGCTTAGCC TACTTCATCGTCGGA  72 68
   Dhaf_1536 1640211 .. 1640238 +  -5.6  -5.13344   TGTTTTCGTCATCAG        GCGGTTTTGCTTT AGA AAGGCAGG-CCGC        TTTTTCTGTTGGTAT  85 353
   Dhaf_1537 NONE
   Dhaf_1538 1642358 .. 1642397 +   -13  -3.93262   CAGTGGATAAGTCAA  CTAAGCCTCAGGTGGAGTT TTA AACTCCACCTGAAGCA-AG  TTTCCTATATTGAGG 100 3
   Dhaf_1539 NONE
   Dhaf_1540 NONE
   Dhaf_1541 NONE
   Dhaf_1542 NONE
   Dhaf_1543 NONE
   Dhaf_1544 1649111 .. 1649153 + -11.3  -3.05384   GCAGCCGTTGCAACC CAGTAGCTCTGCGTTGACG CTGTA CGTTTACGCAGAGCTACAA TTCAATACAGCGGGA  83 58
   Dhaf_1545 1650572 .. 1650597 +    -6   -3.1552   CCTGGGCCAGCTCTA         CCCGGAAGGC TTCGAT GCGGTCCGGG          TGTTCATCAGTGGCC  55 374
   Dhaf_1548 1653454 .. 1653468 +   -10  -2.73364   CGATCATTAAAATAT               TCCTGG CTT CCAGGA               TGGTTCCGATGCCCA  66 247
   Dhaf_1550 NONE
   Dhaf_1551 NONE
   Dhaf_1552 1657520 .. 1657548 +  -8.2  -3.96531   GAATAAGCAGTAAAA       TCCCCTG-CGG AGATTAAA CCGGCAGGGGA        TTTCTCACTATGTAA  77 59
   Dhaf_1553 1658574 .. 1658592 +  -6.8  -3.28219   AAAACCTGTGAACAA             CTGTTTGT ATG ACAAATAG             TGTTGTGGTACACTT  61 30
   Dhaf_1554 NONE
   Dhaf_1555 NONE
   Dhaf_1556 1661881 .. 1661933 + -12.8  -3.68435   ATTATCTTAGCTGGA GCAGAAGGGCCTGTCACCAAACGTT TGCA AACGTGGGGCGGCAGGCC-TTTTGC TATTCTTTTAGGCGG 100 31
   Dhaf_1557 1663142 .. 1663155 +  -5.3  -3.21595   ATTTTTTATGAGGAA               TGATG CCGG CATCA                TTCCTCATACCAGTT  53 173
   Dhaf_1558 1663704 .. 1663715 +    -3  -4.19276   GGAGGAAGAACTCAT                TATG CAAA CATA                 TTATTTATATATCGT  58 124
   Dhaf_1559 NONE
   Dhaf_1560 1665982 .. 1666000 + -13.2  -4.90266   GATAAAGACAGTTTA             GGAATGCC GGC GGCATTCC             TTTTTGCTTCCTCAA 100 48
   Dhaf_1561 NONE
   Dhaf_1562 1668549 .. 1668565 +  -8.1  -3.53343   AATTAAATTAAAAAA              TTGTAGA CAA TCTACAA              TTTAAAAAGGAAATT  68 128
   Dhaf_1563 NONE
   Dhaf_1564 1669563 .. 1669591 +  -8.9   -5.1615   TATAATGTAAAAAGA        GATATCCAAAGGC GGC GACCTTGGATATC        TTTTTTAGATCTTAG 100 77
   Dhaf_1565 NONE
   Dhaf_1566 1671375 .. 1671404 +  -6.3  -4.82667   GATCACCCAAAAAGC       TTCCGGTCTCAGG GCAA TCTGTGGCCGGAC        TTTTTCATGTACTGA  80 39
   Dhaf_1567 NONE
   Dhaf_1568 1675648 .. 1675679 + -18.2  -3.85567   AAGGGTTTAAGTTAA      TTACCCCATAGGAC ATAA GTCCTGTGGGGTAA       TTTCCATTTAGGGTT 100 99
   Dhaf_1569 NONE
   Dhaf_1570 1678182 .. 1678193 +    -3  -3.60048   GTTTCGGGGATGGAC                TCAT CTAG ATGA                 CTTTTTTAAAAACAG  51 14
   Dhaf_1572 NONE
   Dhaf_1573 NONE
   Dhaf_1574 1684180 .. 1684214 +  -6.5  -5.27335   TAAATAGTAACATAA     GTGTCTTTTGGTTTC CCAAC GAAACTGAAGGGCGC     TTTTTATTTCCCGAA  89 59
   Dhaf_1575 1685228 .. 1685257 +  -2.9  -5.93252   ATATGTGTAGTTAAA       GGCTTTTACCTATC TTA GGGAGG-AAAAGTC       TTTTTTATTTTTCAG  93 54
   Dhaf_1576 NONE
   Dhaf_1577 1686829 .. 1686854 +  -6.9  -3.70674   CAGTAAGCAAAAACA         CCTCTATCC AATACTAC GGATAGGGG          TATTTTCAATGGTCC  65 386
   Dhaf_1578 NONE
   Dhaf_1579 NONE
   Dhaf_1580 1689520 .. 1689530 +  -3.2  -4.32034   GCAACACGATAAATT                 GGGA CAA TCTC                 TTTTGCTAGTAATGA  61 111
   Dhaf_1581 1690074 .. 1690084 +  -8.2  -2.70525   AGCCGTAATAAACCC                 CGGC AAC GCCG                 ATTGCTTTGGGCAAA  61 147
   Dhaf_1583 1693142 .. 1693168 +   -11   -5.1287   ACAACAAAAGGAGCG         GGCATGTTTTCA CAA TGAAGATATGCC         TTTTTTACGTATCAC 100 125
   Dhaf_1584 NONE
   Dhaf_1585 NONE
   Dhaf_1586 NONE
   Dhaf_1587 1698278 .. 1698288 +  -3.2   -4.4009   CCGTCAGGCAGTTTT                 GAGC ACG GTTC                 TTTTCTCCGGTGGAA  61 280
   Dhaf_1589 1699624 .. 1699634 +  -3.2  -3.20435   TAAGAGGATGAGACT                 CTGT TTC GCAG                 TTACTACCTGATTAA  46 155
   Dhaf_1590 NONE
   Dhaf_1591 NONE
   Dhaf_1592 1700690 .. 1700702 +  -3.3   -3.2511   AATTATCAAACCAAG                CACCG GCC CTGTG                ATTTTCTGGCTGAAG  47 46
   Dhaf_1593 NONE
   Dhaf_1594 1702476 .. 1702491 +  -3.2  -2.77701   AACAACATTATTATA              TGGCAC ATAG GTGACA               TACTCTTGATACCGT  43 65
   Dhaf_1595 1704015 .. 1704053 + -13.2  -4.84017   ATACTCTTCTTGTAA   GCAGAAACCCGGTGCA AAGTTGA TGCGCTGGGCTTCTGC   TTTTTGTAACACATT 100 163
   Dhaf_1597 NONE
   Dhaf_1598 1708394 .. 1708404 +  -4.6  -4.42974   GCCCAAATTCGGAAC                 CGGG CCG TCCG                 TTTATTATGTGTAGG  68 1
   Dhaf_1599 1709312 .. 1709329 +  -2.6  -3.85698   CAGCTTCAGCAAGGG             CAGCCA AACTAA TGGCCG              TTTATGAGGAAGAAA  52 95
   Dhaf_1600 NONE
   Dhaf_1601 NONE
   Dhaf_1602 1712073 .. 1712102 + -13.7  -3.58208   AATCACTAAATCGGA       GGCACTCTACG TTAAATTC CGTAGAGTGCC        TTGCTTATTATGCCG 100 46
   Dhaf_1603 1713123 .. 1713150 +  -2.1  -2.68823   CATAAAGCGTGGAGG        TGTTTGGTGTGA ATAAA TCAC-CTGAACA        ATTATATGAAGAGAG  40 52
   Dhaf_1604 1714422 .. 1714436 + -12.8  -4.02911   TCACAAACAGTATGG               GGGGCC TTT GGCCCC               TTATCTTTATTTCCC 100 72
   Dhaf_1605 NONE
   Dhaf_1606 1716005 .. 1716060 +  -6.5  -4.84359   CAAAATAAAAAATAG GAAAAGACATTAGCGTGAGTTGATACC GGGA GGTA--AAGATGCGCTAATGTCTTTTC TTTTTATAAAGCTGA  80 50
   Dhaf_1608 1717426 .. 1717463 + -14.2  -4.65933   TAGAAAAATGAGTGT   AAAGGCACCCTACGCT GAATGA AGCGTAGGGTGCCTGA    TTTGTTTTCGGCCTA 100 440
   Dhaf_1613 NONE
   Dhaf_1614 NONE
   Dhaf_1615 1725068 .. 1725087 +  -2.1  -4.62069   CTCCTGCTTCGGTGA            GGACG AATTCTTTGC CGTCC             TTTTTCAAATAACCG  63 303
   Dhaf_1619 1729918 .. 1729931 +  -6.7  -2.73483   GGTAATCGGCAGCTG               GATGG GCGT CCATC                TCCTTGAAATACCAT  53 314
   Dhaf_1624 1737441 .. 1737469 +    -9  -4.29325   CTATCCTGATCAAAA        CCAGATCCTTAT AAGGA ATAAAGATCTGG        TTTTCAATATTAATG  86 141
   Dhaf_1629 NONE
   Dhaf_1630 NONE
   Dhaf_1631 NONE
   Dhaf_1632 1746678 .. 1746734 +  -6.6  -2.71364   TTTTAGTATAGGCAT CTGAATTAATGGGGCATAGAGCGGAGC AATG GTTTCGCTCTATGCCCCGATC-TCAAG TCATTCAAGGGATAA  56 30
   Dhaf_1633 NONE
   Dhaf_1634 NONE
   Dhaf_1635 NONE
   Dhaf_1636 1751254 .. 1751268 +  -2.8  -2.77166   GAGGGCCACCATAGT               CTTATG CGC CGTGAG               GGTTTTTTAAGATAG  42 1
   Dhaf_1637 NONE
   Dhaf_1638 NONE
   Dhaf_1639 NONE
   Dhaf_1640 1753813 .. 1753843 + -13.5   -3.8211   GACATTTGAAAGGAA       TCCGGGTTTTATT GAATA AATAGAACCCGGA       TTATTGTGAATCAGC 100 39
   Dhaf_1641 1754857 .. 1754873 +  -4.5  -2.89742   TTTATCGCAAAAATA              TTCTTTG TTT TAAAGAA              TATCTGACCATTAAG  49 202
   Dhaf_1642 1755506 .. 1755526 +    -4  -5.64873   ATTGTCTATCCAGGA            GAGCTTAC AATCA GTAGGTTC            TTTTTTATTATTGCG  90 151
   Dhaf_1643 1757036 .. 1757051 +  -3.2  -3.64703   CGGATATCTACTCCA              CCGATT ACTG AAGCGG               TTTGCCTGGGAAAAC  51 15
   Dhaf_1644 1757822 .. 1757833 +  -3.6  -3.32914   CTGATGGGAATATTT                GCGG ATGG CTGC                 TTCCTCTGCTTGGAT  48 259
   Dhaf_1648 NONE
   Dhaf_1649 NONE
   Dhaf_1650 1764118 .. 1764135 +  -5.7  -3.02829   AAAAGTTAATCAATA             TAATTGT CTTG ACAATTA              TATTGGGGAGGTGTA  54 115
   Dhaf_1651 NONE
   Dhaf_1652 1765991 .. 1766016 +  -7.6  -5.52347   GCGTCTAAGCGAAAA         TCTCCACTAC ATTAAA GCAGTGGAGA          TTTTTTCATTTTATT 100 33
   Dhaf_1653 1767249 .. 1767279 +  -5.5  -5.42131   GAAAATAAGCAAAAA       CAAGGCCGAAG AAGTGCAGA TTTTGGCCTTG       TTTTTTATCTGATTC  87 42
   Dhaf_1655 NONE
   Dhaf_1656 1769277 .. 1769305 + -12.5  -3.75772   GAATCGTTGACAAAA        GGCATCGGAACCT AAA AAGTTCTGATGCC        TTAGTTGTTTTTCCT 100 42
   Dhaf_1658 NONE
   Dhaf_1659 1774861 .. 1774906 + -22.8  -2.90194   AAGTAATTTAGAAAC TAAAGACTGCCGCCAAAGCC CATCAA GGCTTAGGCGGCAGTCTTTG TGTCCTTAAAGAAAT 100 67
   Dhaf_1661 NONE
   Dhaf_1662 1778634 .. 1778646 +  -6.2  -2.75521   GCCCTGCTTTAGCTT                CCCG TTAAC CGGG                CTTTCCAGCTGTACT  55 29
   Dhaf_1663 NONE
        vanB 1780623 .. 1780653 +  -9.7  -3.40299   AAGAAAATTGCCAAA       GGGACAGTTTGCC GATAG GGTGGGCTGTCCC       TTATCGGTATGGTGA  76 68
   Dhaf_1665 NONE
   Dhaf_1666 1782641 .. 1782680 + -10.9  -4.60797   AAGCTGGAAGTCCTA  TAGCTCCTTGTTCTGTG GTTAAG TACAGAATGAGGAGCTG   TTTTATATGTCCGAG 100 67
   Dhaf_1667 NONE
   Dhaf_1668 1784697 .. 1784712 +    -9  -2.98169   GGAATCAAAGGCTGA              GCAAGG AAGG CCTTGC               TATATAAATTCTTGC  68 26
   Dhaf_1669 NONE
   Dhaf_1670 NONE
   Dhaf_1671 NONE
   Dhaf_1672 1789876 .. 1789906 + -14.8  -3.53343   TAAATGAATGAACGC       CAAAGAGCACCGAG CAG TTCGGTGCTCTTAG       TTTAAAAGGCGAGTT 100 30
   Dhaf_1673 NONE
   Dhaf_1674 1791832 .. 1791844 +    -2   -2.8474   GCCTCAGGCTGCCTG                TTCT CACCC AGAA                TGATTGTGACTAAAA  41 0
   Dhaf_1675 1792411 .. 1792423 +  -6.9  -3.48593   TAAAAATGTATCGCT                CCGGC GCG GCTGG                TTGTATGAGAAGGTA  63 138
   Dhaf_1676 1793129 .. 1793142 +  -3.8  -4.05026   TTGGTCTCGATTACT               TGGG CGGTTT CCCA                TTCTTTGACTTTGGC  60 316
   Dhaf_1678 NONE
   Dhaf_1679 1795429 .. 1795474 +   -15  -5.46629   AAAGGAATTTAGTAA GGGATTTTTGAGATACGAGG GTAGAA CTTTGAATCTCAAAAATCCC TTTTTTTACACTATT 100 122
   Dhaf_1680 NONE
   Dhaf_1681 NONE
   Dhaf_1682 NONE
   Dhaf_1683 NONE
   Dhaf_1684 1798300 .. 1798319 +  -9.2  -4.39002   AAGCTAAAAATCTTT            CCGGCAGA TCTA TCGGCCGG             TCTTTTTTATTGCTG  88 113
   Dhaf_1685 1799185 .. 1799235 +  -2.6  -5.31275   TAAGTAATTAAAAAA CACAAAGGCATTGATAAACTCT GGAATAA GGCGTTCAGCGATACCTTTGTG TTTTTTATAGTCCGA  76 38
   Dhaf_1687 NONE
   Dhaf_1688 NONE
   Dhaf_1689 1802807 .. 1802820 +  -8.1  -3.25823   GCATGACGGCACTGT               CAGCC TTAC GGCTG                TTGATATGAACAGCG  66 3
   Dhaf_1690 NONE
   Dhaf_1691 1803605 .. 1803634 + -14.3  -5.61824   TGGGAATCAGAAAAT       GCCGCCAAAGCTT CGTC AGGCTTAGGCGGC        TTTTTTTGCATTTTC 100 117
   Dhaf_1692 NONE
   Dhaf_1693 NONE
   Dhaf_1694 1807373 .. 1807396 +   -16  -4.56597   ATAGTGGAGGAAAAA          GAGCGCCGGG GAAG TCCGGCGCTC           TTTTTAAAGGGGAAC 100 37
   Dhaf_1697 NONE
   Dhaf_1698 1811555 .. 1811590 + -14.9  -4.09739   GGTGGCCAAAAAACT    GGAAAGTTTCCTCGG TTAACT TCGGGGAAACTTTCC     TTTTAAGCAGATTAG 100 58
   Dhaf_1699 NONE
   Dhaf_1700 NONE
   Dhaf_1701 NONE
   Dhaf_1702 NONE
   Dhaf_1703 NONE
   Dhaf_1704 NONE
   Dhaf_1705 NONE
   Dhaf_1706 NONE
   Dhaf_1707 NONE
   Dhaf_1708 1825279 .. 1825303 + -12.1  -4.86133   AAAAGTGAGAGTTAA          GGAGCTTACCC CAA GGGCAGGCTCC          TTTTTGCTGTCTATA 100 121
   Dhaf_1710 1830438 .. 1830455 +  -5.6  -2.57781   CACAGCAGATAATAA             TGAGGA ATAATG TCCTCA              TAGCTTCCGTCTTTC  52 108
   Dhaf_1712 1833021 .. 1833059 + -19.6   -4.2074   ATAAGTTGACAAAAA   GACTGCCGCCAAGGCCCT ATT AAGGCTTAGGCGGCAGTC   TTTGTATCTTAAGAA 100 37
   Dhaf_1714 1836170 .. 1836206 +   -16  -4.30576   AACCGTTGTACTCAG   GACGCCCGGCTTTTCCT GCCC AGGGAAGGC-GGGCGTC    TTTTCGTGCTGCAGG 100 161
   Dhaf_1715 1838660 .. 1838681 +  -3.1  -2.93164   CCGTACTTTTTTCTC           TGGATTT GCCCGCCA AAATCCA            TATAATTAGGTATAA  44 179
   Dhaf_1716 1840441 .. 1840455 +  -4.2  -4.11751   CAAGGTATTGGCCAT               GGTACC AAT GGTGTC               TTTTCCGACATTCAT  61 180
   Dhaf_1719 NONE
   Dhaf_1720 NONE
   Dhaf_1721 1846204 .. 1846224 +  -3.9  -3.14848   TGTAACACCTTAACC            TTGCCTTGC CCG GCGGGGAAA            ATTTTCGTAGGACAA  48 57
   Dhaf_1722 1848032 .. 1848086 +  -4.8  -4.14243   GCGTAAGTATAAACC CGGCGGGGAATCGTCAGCCTTACCAG CTC CAGTTTAGGATGGCGGTTTTCCCCTG TTTTAAGATCACGTC  64 168
   Dhaf_1724 1850264 .. 1850308 + -14.4  -4.39287   CGGACAATTCATGAA GGGAGTACCCCTTGGCTGCTT TTTG AGGCGGC-AGGCGGTACTCCC TTTTGCTATGATTGC 100 53
   Dhaf_1725 1852041 .. 1852058 +  -3.4  -4.43844   AAGGATAAGGAGTGT             GGTTGA AATGGG TCAGCC              TTTTGTGCATCCTAC  63 132
   Dhaf_1726 1853572 .. 1853597 + -14.9  -2.94331   ATTGAGAGCGGACCA         GGCGTATTTTC TAAT GAAAATACGCC          TCCTTCTGATTTTCA 100 65
   Dhaf_1727 1855344 .. 1855366 + -10.7  -5.52384   ACCGGCTATGAGCGG           GGGTTAGTT GAAAA AACTAACCC           TTTTTTTGATGCACA 100 49
   Dhaf_1728 NONE
   Dhaf_1729 NONE
   Dhaf_1730 1859179 .. 1859211 +  -2.2  -2.90496   AGGCTGATTATACTT      GAAACTGAAA GAAAAGCAGTGAA TTTCAGTTTC      TCATTTACGAGGAGG  42 75
   Dhaf_1731 1860795 .. 1860807 +  -4.9  -2.63623   GAGTGTATCTGAAAA                GATAT AAA ATATC                ATGTGTTTTGAAGGA  48 61
   Dhaf_1732 1861524 .. 1861555 + -11.7  -4.21098   AGTACCAGCGGGATA      CGGTTCAGGTAGT CATACC ACTACCTGAACCC       TTTTGAACTTACTGT 100 85
   Dhaf_1733 NONE
   Dhaf_1734 1864404 .. 1864414 +  -3.2  -3.17723   GGCCGTCCCCATTGG                 TTGG ATG CCGA                 TTAGCTTGCCGGTCA  46 11
   Dhaf_1735 1865181 .. 1865198 + -12.7  -3.18118   CAGGTTGATGCTATT             GCCCGGA TGAA TCCGGGC              TCTGTTGTAGAGTGG  93 92
   Dhaf_1736 1866784 .. 1866797 +  -5.2   -2.6155   CAAAAGTACACCACC               CCGG AATATA CCGG                ATTGCTCTTCGGGAA  49 55
   Dhaf_1737 1867770 .. 1867798 +  -8.1  -2.78596   TGAAAAAGCGGAAGT        TCCCCTTTTGGGC AAT GGCTGGAAGGGGA        TATAATGGGGAAATA  61 81
   Dhaf_1738 1868181 .. 1868205 +  -7.9  -4.49337   AAAGGTGCTGTAAAA          GCCTATTCATT TCG GGTGAATGGGC          TTTTCTGGCTTCTGG  82 55
   Dhaf_1739 1868874 .. 1868884 +  -3.2  -2.64258   TACGTCAAAGCTAAA                 CAGT CCC GCTG                 ATTACTTCAATTCGT  42 14
   Dhaf_1740 1869628 .. 1869671 +  -3.8  -3.54475   GTTGGGCTATCGGCT GGAGGTGCAGGTATGAGGA ATGAACG TCC-CAGACCGGGGCCTCC TTCTGTGATCCGGGG  51 10
   Dhaf_1741 1870722 .. 1870771 + -11.7  -4.39568   TTAAACTCCATTTAA CCTCCGTTAATTTTGA-ACCTTTA CCA TAAGGGTATCAAAGAAAACGGAGG TTTTGCTATGTCAGT 100 37
   Dhaf_1742 NONE
   Dhaf_1743 NONE
   Dhaf_1744 1873616 .. 1873674 + -11.9  -3.63744   GGATGCTCTCCACCA GCCGATGGGGAAGAGTTCAAATGATGCA GCGC TGCAACATTTGAACTCTG-CTCAGAGGC TCTTTTGGGAAAGAG  93 50
   Dhaf_1745 NONE
   Dhaf_1746 1875066 .. 1875079 +  -3.9  -3.86015   CATTTGCTTTGATAT               CAAAT TATA ATTTG                TTTATGAAGCAGATA  56 56
   Dhaf_1747 1875987 .. 1876007 +  -6.7  -5.12707   CATAGACTTTTTCAG            CCCCGCCCA TGA TGGCCAGGG            TTTTTTCCGCTTTAA  87 495
   Dhaf_1749 NONE
   Dhaf_1750 1878646 .. 1878669 + -10.4  -5.44119   GGGAATGGCTGATCT          TGAAGCAGGA CTTT TCCTGCTTTA           TTTTTTTACGCTGGA 100 29
   Dhaf_1751 NONE
   Dhaf_1752 NONE
   Dhaf_1753 1882440 .. 1882486 +   -11  -4.03104   AGCCCTGATTTGTAT CGAGGGGTTTAGATTTCCGCC GTTTTG GGC-GATCTCTAAACCCCTTG TCTTTTATTAATTTG  90 33
   Dhaf_1754 NONE
   Dhaf_1755 NONE
   Dhaf_1756 1885658 .. 1885681 +  -2.4  -3.53811   TGAATTATACAAAAG          GATTTGCTGT AGAT GCAGTCAATC           TTTGCAAAGGCTGCA  47 47
   Dhaf_1757 1887605 .. 1887655 + -18.5   -4.0616   AATGCCTAACAATAG TTTACAAGGGCAGATGACTCCCG TATAC CGGAAGTTATCTGCCCTTGTATG TTTATGCTTGCCATA 100 116
   Dhaf_1758 NONE
   Dhaf_1759 NONE
   Dhaf_1760 NONE
   Dhaf_1761 1891705 .. 1891758 + -14.8  -3.73224   GAATAAGATAAGCAG AGGTACAGC-AAAACAGGCCGGCAGT GACA AC-GCCGGCCTGTTTTAGTTGTTCCG TTTAATAAAAACTGC 100 111
   Dhaf_1762 NONE
   Dhaf_1763 NONE
   Dhaf_1764 1894694 .. 1894714 +  -3.1  -4.12902   TCGGTATTCTTGTGG            ACTTTCCCC AAG GGGGTGAGG            TTTTCAAAGTCATTG  56 374
   Dhaf_1766 1896210 .. 1896239 + -14.5  -3.71649   ATGGAATTATTAGAT       TAAGCACTGAACA ACTG TGTTCAGTGCTTG        TTTGCAATTTGAGGC 100 303
   Dhaf_1770 1900298 .. 1900335 +  -7.1    -2.752   GCCTTTTTATGTTTA   GAATAAGGGGGGATGTA CTAG TGCAGCTTTCCTTATTC    CTTGTGTCTGCCACT  59 133
   Dhaf_1771 NONE
   Dhaf_1772 NONE
   Dhaf_1773 NONE
   Dhaf_1774 1902641 .. 1902653 +  -4.9  -4.10925   TTGTTTGCGCAGAAT                TCTAT CCC ATAGA                TTTTGGGGAATCTCT  62 148
   Dhaf_1779 NONE
   Dhaf_1780 1907706 .. 1907738 + -12.8  -4.83169   AATTAACCCGGTTGT      TCCAGAGCCTGGAG GTAAG CTTCAGGCTCTGCA      TTTTTCTCAGACCCT 100 312
   Dhaf_1785 NONE
   Dhaf_1786 NONE
   Dhaf_1787 1913170 .. 1913180 +  -3.2  -2.63073   CTGCTAGGTTCCAGG                 CGCT TTG AGTG                 ATCTTATTAAAAAAA  42 34
   Dhaf_1788 1913539 .. 1913565 +  -9.5  -4.32067   AATAGTACAGAGCAA         GCCGATTGGGA CATGA TCTTAATCGGC         TTATTTTATAGGGTA  88 39
   Dhaf_1793 NONE
   Dhaf_1794 NONE
   Dhaf_1795 NONE
   Dhaf_1796 NONE
   Dhaf_1797 NONE
   Dhaf_1798 NONE
   Dhaf_1799 NONE
   Dhaf_1800 1927178 .. 1927204 + -18.1  -3.64822   CGATATGAAACTTCA         GAGCGGATGCC TGCGC GGCATCCGCTC         TTTCAATAAAAAGCT 100 53
   Dhaf_1803 NONE
   Dhaf_1804 1930209 .. 1930221 +  -9.1  -3.58162   CCCTTGAAACGTTAG                GCGGA ATC TCCGC                TTACTTTAATCCTGC  75 114
   Dhaf_1806 1932085 .. 1932104 +  -2.1  -3.13689   GATGAAAGGTTAGAC            TTCGGCT AACAGC AGTCGGA             ATTTATATATATTTG  43 40
   Dhaf_1807 1933056 .. 1933077 +  -2.9  -4.36914   ACATAGGACGCAGGG           GGAAGCGCA TCCA TGCACTTCA            TTTTGTACGGGAACA  59 370
   Dhaf_1808 1934921 .. 1934948 +  -7.8  -4.27316   AAATTCCCAAATAAG        CGGTTGCATT ACGAAAAA AATGCAGCCG         TTTTCAATTGCACAG  79 100
   Dhaf_1809 1935913 .. 1935927 +  -5.6  -2.57013   CCGTCGGAATACCGG               GAGGGC TTT GCCCTA               TAAGTTAGCTTAGCC  52 8
   Dhaf_1810 1937070 .. 1937103 + -15.3  -4.36903   CAAGTAGAAAATTTA     CCGGGCGTTGCCTGT TCGG ACGGCCAACGCTCGG      TTTCTCTTTGCTGAA 100 34
   Dhaf_1811 NONE
   Dhaf_1812 NONE
   Dhaf_1813 NONE
   Dhaf_1814 NONE
   Dhaf_1815 NONE
   Dhaf_1816 NONE
   Dhaf_1817 NONE
   Dhaf_1818 1945422 .. 1945473 + -33.6  -2.72991   AGAGGGCGGGCTGTA TAAGAGGGCTCGTAAGATTCGAAT CTGG ATTCGAATCTTACGAGCCCTCTTA TGGTTCACAATATAA 100 55
   Dhaf_1819 1946402 .. 1946435 + -14.7  -5.24531   GTGAATAGCATATAA     GCGCCTTTTAGCTTC AATT GAAACTGAAAGGCGC      TTTTTTATCAGAGGT 100 70
   Dhaf_1821 1949424 .. 1949449 + -13.3  -3.76232   CCACATATATTGAGC         AGGCGGGGAAA TTAA TTTCCCCGCCA          TTATCTGTTTCAGGC 100 52
   Dhaf_1822 NONE
   Dhaf_1823 NONE
   Dhaf_1824 1954453 .. 1954480 +   -10  -3.40141   ATCACACATATCCAA        GAGGAAGCT-CTG ATT CAGGAGTTTCCTC        TTGATTCCGATTTTA  76 51
   Dhaf_1825 1954900 .. 1954929 +  -7.9  -3.98661   TCTGGAAAATCAAAA       GAAGCC-CCTAGCA TCC TGCTGGCAGGCTTC       TTTGTCGTGCATCTG  74 88
   Dhaf_1827 NONE
   Dhaf_1828 1958134 .. 1958159 + -14.9  -5.03145   ACACAGCCGAAAAAA         CGCTTGAAATC AAGA GATTTCAAGCG          TTTTTTAACGAATTA 100 168
   Dhaf_1832 NONE
   Dhaf_1833 1962780 .. 1962792 +  -7.7  -2.60901   AAGAAAGGAGACGGC                CATGG AAT CCATG                ATTCGTTCCAAGTAT  60 40
   Dhaf_1834 NONE
   Dhaf_1835 NONE
   Dhaf_1836 NONE
   Dhaf_1837 1964998 .. 1965008 +  -3.2  -4.78572   AATTAGGTATGATTT                 TAGC CAT GCTG                 TTTTGTTAATTAGCC  68 6
   Dhaf_1838 1966281 .. 1966292 +  -5.8  -2.67021   TGCTGAACTTGCAAA                TGGG AACT CCCA                 ATTAATATTTGCAGC  52 413
   Dhaf_1839 1966973 .. 1966985 +  -4.8  -4.10161   GGGGCGCTCTCCTTT                GCTG ACCTG CAGC                TTTTACCCCATGCTC  63 412
   Dhaf_1841 1968787 .. 1968799 +  -2.6  -3.83403   GATTTTAAACAGAAG                GGCT GAACA GGCC                TTGGTTGTTTTTTTC  52 250
   Dhaf_1844 1971195 .. 1971205 +  -2.4  -3.48115   AGCTGTGGTTTTCCT                 GCCG GAT CAGC                 TGTGTTTTGTAAGGC  47 3
   Dhaf_1845 1972214 .. 1972228 +  -7.8  -2.79803   CACCAATCGGGTTCA               GGCAGC AGT GCTGTC               GTTTGGGTGCAATTC  61 44
   Dhaf_1846 1972655 .. 1972674 +  -6.4  -3.75738   TTGAAAACAATCCGG            CTCAGGAT GATG ATCCCGAG             TTATTAGTCATCCTC  65 139
   Dhaf_1847 1973301 .. 1973357 + -14.8  -2.60496   TCTGTAAATAAAAGC ATGTTTAG-AGGAAAGGTCGCTCTTTT AAAT AAAAGGGCGGCCTTTCCTGCTGAATAA CTGTTTAAAGAGCCG 100 41
   Dhaf_1848 1973748 .. 1973776 +    -3  -3.33162   GCCCGCAAAAGATAG        CCTTCCATTGGT CAATT GCCGTTGGTAGG        TTGTGAGGTGAACTG  47 105
   Dhaf_1849 1975981 .. 1976006 +  -6.9  -2.68279   GCACCGACAAGAAAA         TAATGAACGCA AATT TGCGCTCGTTA          TCGGTTTAGTCGATA  56 395
   Dhaf_1850 1976570 .. 1976590 +  -3.9  -3.55203   GGTATTCCTGCAGTG            TCGCAACCA TGT TGGTCGCAA            TTTCCAAGGCCTTTT  52 122
   Dhaf_1852 NONE
   Dhaf_1853 1978478 .. 1978507 +  -3.7  -6.37666   CTACTTATTATAAAA       GAAACTATCGGACT AAC AATTCGA-AGTTTC       TTTTTTTTATTTTAT 100 81
   Dhaf_1855 NONE
   Dhaf_1856 NONE
   Dhaf_1857 NONE
   Dhaf_1858 1985465 .. 1985492 + -10.7  -4.25104   AACTATCAGTATGAA        TTGAGTCTTCC TTTGCC GGAGGACTCAA         TTTTAATGGGGCCAG 100 40
   Dhaf_1859 1986291 .. 1986348 + -40.5  -3.64703   ATTGCGAAAGTACGG CCACAAGAGGGCTCGTAAGATTCGAAA CCGG TTTCGAATCTTACGAGCCCTCTTGTGG TTTACCTCCGACCCA 100 143
   Dhaf_1860 1988201 .. 1988230 + -11.5  -4.18018   GAAGGATCGGTAAAA       CGCGGCCATACC CGGTTGT GGT-TGGCCGCG       TTTTGCATGAAAAGG 100 49
   Dhaf_1861 NONE
   Dhaf_1862 NONE
   Dhaf_1863 NONE
   Dhaf_1864 1991749 .. 1991770 + -17.3  -4.38927   CTGTTCAGGCCGATT           CCGGCGCTG GCAA CAGCGCCGG            TTTCTTCTGTGCGGA 100 134
   Dhaf_1868 1997912 .. 1997923 +  -3.6  -3.40925   TGCGCTGCATAAGAC                TGGG GACT CCCG                 TGTGTTTCTGATTTT  51 126
   Dhaf_1869 NONE
   Dhaf_1870 NONE
   Dhaf_1871 2001742 .. 2001772 + -12.1  -3.18023   AATTATAAATAAACA      GAGCAAG-CATTTC TTAG GAAATGCCTTGCTC       TATTCATACTCATAC  86 57
   Dhaf_1872 2003276 .. 2003292 +  -2.1  -4.63993   TTATAGTTCGGAAAA              GCTCCGG ATC CTGGGGA              TTGTTTTTTCAAATT  63 35
   Dhaf_1873 2004703 .. 2004715 +  -4.8  -3.40403   TAGGGGAACCAGTTA                GCCA ACGGA TGGC                TTCTCGTGAAAGAAA  53 103
   Dhaf_1874 NONE
   Dhaf_1875 NONE
   Dhaf_1876 NONE
   Dhaf_1877 2009919 .. 2009938 +   -10  -4.87626   CTGAAGACCCAAGAA            CCCTTTGC TGAG GCAGAGGG             TTTTTCATATTGAAA 100 37
   Dhaf_1878 NONE
   Dhaf_1879 2011319 .. 2011349 +  -8.3   -4.9645   AAGAAATAGGTTTAA      CCCCC-TGCTCAAA CTAA TATGGGCAAGGGGG       TTTTGTTGTTATAGT 100 71
   Dhaf_1880 NONE
   Dhaf_1881 NONE
   Dhaf_1882 2014668 .. 2014685 +  -2.7  -3.43492   CCACCGGCACTATTG             CTTTGAG TGTA CTTGAAG              TTATCATCCATATAA  48 76
   Dhaf_1883 NONE
   Dhaf_1884 2016338 .. 2016374 + -10.4  -3.31263   TCCTTGATTCACAAA   GGTAGTATAGAGTACGGT GTA ACCG--CTCTATACTGCC   TTCTGAAGCTGGGGT  78 77
   Dhaf_1885 2017929 .. 2017948 + -12.2  -4.27316   AGCTGCTTCCACTAA            CTGCTTCC AGCC GGAAGCAG             TTTTCACTTCCAGGG 100 63
   Dhaf_1886 NONE
   Dhaf_1887 NONE
   Dhaf_1888 2021892 .. 2021923 + -21.8  -2.70932   AAGGGCGGTTGTACT      TGTTTCCGCAGCAG CTGG CTGCTGCGGAAACA       TCGTTCCCAGGCAGA 100 40
   Dhaf_1889 NONE
   Dhaf_1890 NONE
   Dhaf_1891 NONE
   Dhaf_1892 2026888 .. 2026903 +  -3.2  -3.68351   TCGGTGGCTTTACCG              CCGG AAAAAAAG CCGG               TTTAAATGATAGACC  51 5
   Dhaf_1893 NONE
   Dhaf_1894 2029383 .. 2029424 + -22.5   -5.4148   AGGAGGAGAAACCAG GGGCCGTTGCTTACGAACT AACC AGTTCGTGAACAACGGCCC  TTTTTTGCTTGTTTA 100 120
   Dhaf_1900 2038318 .. 2038343 + -20.5  -4.17425   ATATTTATCTGAAAA         GGGGCCGTGAC TACA GTCACGGCCCC          TTTTGGCATGGTTCT 100 62
   Dhaf_1901 NONE
   Dhaf_1902 2040022 .. 2040076 +   -22  -4.53857   AAAACAGAAAACCCG TGCCGAAAGAAAGAGACGCAACAAA ACAAGG TTTGTTGCGTCTCTTTCTTTCG-TA TTATTTATTTTTGCT 100 72
   Dhaf_1904 2043359 .. 2043379 +  -4.7  -3.62096   ATAAAAACCAGATTT            GTAAAGTCT ATA AGGCTTAAC            TTTAAAATGATCAAA  57 6
   Dhaf_1905 2043838 .. 2043877 + -10.8  -2.52291   ATCCCGTCGGTTGCA  AGGCTATCTCCTAATGAT ATGT ATCTTTTGGAGATAGCCC   CTCTTCATCTGAATT  76 103
   Dhaf_1906 NONE
   Dhaf_1907 NONE
   Dhaf_1908 2047869 .. 2047892 +  -9.6  -5.24129   CCCAAAAGTATCAAA          CACCCTCATT ATGG ATTGAGGGTG           TTTTTTGTGCGCCAG 100 106
   Dhaf_1910 NONE
   Dhaf_1911 NONE
   Dhaf_1912 2051682 .. 2051694 +  -3.3  -2.61656   ACTTGACCGCGTTTG                GCATG TTT CTTGC                ATATGTTTCTGGTGT  42 263
   Dhaf_1913 NONE
   Dhaf_1914 NONE
   Dhaf_1915 NONE
   Dhaf_1916 2055347 .. 2055365 +  -3.9  -2.90075   ACAATCGTAGGATAA             TAAAGCA AGGCA TGCTTTG             TATAATTGCCGGGAG  45 26
   Dhaf_1917 NONE
   Dhaf_1918 NONE
   Dhaf_1919 NONE
   Dhaf_1920 NONE
   Dhaf_1921 NONE
   Dhaf_1922 NONE
   Dhaf_1923 NONE
   Dhaf_1924 2061295 .. 2061309 +  -2.1  -2.60982   AAATTGGATTCTAGG               TCTGA CAATT TCGGA               GTTATCAGCGTTTCT  40 27
   Dhaf_1925 NONE
   Dhaf_1926 NONE
   Dhaf_1927 NONE
   Dhaf_1928 2066267 .. 2066277 +  -2.4   -4.3467   CACAATCCAGTATTC                 CCGG ACG CCGC                 TTTTCATGTAAAGGT  61 415
   Dhaf_1930 2068255 .. 2068286 +  -2.8  -3.10164   CCTAAAGCTGACATT      GGCCATCCCTACTC ATTA GGATGGGCCTGGCC       TTGAATGATCCATCG  44 50
   Dhaf_1931 2069363 .. 2069401 + -19.1  -4.77759   AGTGAAAAGGAAAAA   TTGAAGCCTAAGATCGG TTTTC CCGTTCTTAGGCTTCAA   TTTTTCCTGAATTAT 100 89
   Dhaf_1932 2070046 .. 2070069 +    -3   -5.1383   TGTGAAGTATGCTTT          GGCGTTGCTG ATAG CAGCATTGAC           TTTTTGTCTGTTCTT  74 372
   Dhaf_1936 NONE
   Dhaf_1937 2081962 .. 2081997 + -18.4  -3.34895   CATCTAATAATAAAA    GCACTCCCTGTCCGCT CAAA ACCGGATAGGGAGTGC     TTGCTTACAGGTAAC 100 88
   Dhaf_1939 2083688 .. 2083705 +  -3.4  -3.36557   AACACAAGGTTAGCT             TTGGCT AACTAA AGCCGA              TTCCTTGCACTAATT  47 190
   Dhaf_1940 NONE
   Dhaf_1941 2087392 .. 2087438 + -18.9  -4.07568   CAAGGGGAATGTGAC AACCAAAGACGGACTATCGGC GTAAA GCTGATAGTCCGTCTTTGGCA TTTTGAGGGGCAAAG 100 73
   Dhaf_1943 2088825 .. 2088842 +  -2.8  -3.05935   GCTTGTCTCCGAGCA             TGAATA GACAAG TATTCA              TTGGGTGCCGGATAT  43 19
   Dhaf_1944 2091074 .. 2091124 +  -4.9  -4.44448   TGCGATCATTAGCGA AGGCGGTTTTAC-TTTGCTGAGAAT ACA ATTC-CAGCAAACGGGGAACCGTCA TTTCTTTGCGCTCCT  67 156
   Dhaf_1951 2100501 .. 2100515 +  -2.1  -4.08958   ATAGGTTAAATCATC              GAG-CC ATTG GGTCTC               TTCTTCTTTCAAGAT  55 268
   Dhaf_1953 2102309 .. 2102356 + -21.6  -3.90112   ATTTGCATAAGATCA AGATAAGGCCCTTGACACTTCCT GCC GGGAAG-GTCAAGGGCCTTATCG TTTACTTGGGCACGA 100 31
   Dhaf_1957 NONE
   Dhaf_1958 2108570 .. 2108594 +  -5.5  -3.15544   GGGAAATTGTAGCCA          GGCACAAGGGC AGG GCCCGGTTGCC          TTGGTGAAGATAAGG  53 76
   Dhaf_1959 NONE
   Dhaf_1960 2110822 .. 2110874 + -14.6  -4.62069   GCACTGTGTTAAAAT TCAGCTGTTTT-AAAAATGAGGAAG CAGG CTTCGTCATTTTTAAAAACAGCCGA TTTTTAAACTGGAGG 100 46
   Dhaf_1961 NONE
   Dhaf_1962 2113820 .. 2113853 + -18.3  -3.87815   GGATTAGAATAATAG     GGAAGACCTGCTCTT TTTG GAGGGCAGGTCTTCC      TTTGTACACATGCCC 100 63
   Dhaf_1964 NONE
   Dhaf_1965 2118713 .. 2118723 +  -2.6  -3.76125   ACCATTGCTCAGGAG                 TTAA CTA TTAA                 TTTAGGTTAGCATGC  52 5
   Dhaf_1966 2120674 .. 2120703 +  -3.6  -4.89054   GGAAAATCTTTAAGA       CCATACATGCCGT CGTTT GCGG-AAGTATGG       TTATTTTTTTGTGCA  70 28
        pdxA NONE
   Dhaf_1968 2122960 .. 2122976 +  -5.1  -2.62184   TTCCCCAGAAGAATA              ACGGAAT GTG ATTCCGG              TAGTATAAAGGGGCG  49 25
   Dhaf_1969 NONE
   Dhaf_1970 NONE
   Dhaf_1971 2126762 .. 2126775 +  -2.5  -3.06501   AAAGATAAGCCAAAT               TATAT GTGA ATATA                TTCACTAAAAATATG  43 111
   Dhaf_1972 NONE
   Dhaf_1973 NONE
   Dhaf_1974 NONE
   Dhaf_1975 NONE
   Dhaf_1976 NONE
   Dhaf_1977 NONE
   Dhaf_1978 2132698 .. 2132711 +  -5.3  -3.14211   TGAAAAAAGATTTTA               GGTTA TAAT TAACC                TTACTAAACGGAAAT  53 125
   Dhaf_1979 NONE
   Dhaf_1980 2134377 .. 2134404 + -14.9  -4.32482   TTGTCCTATAGTCAG        CCCCCGGTCAC AGGGAA GTGATCGGGGG         TTTTCCATTCTGAGT 100 30
   Dhaf_1981 NONE
   Dhaf_1982 2135324 .. 2135338 +  -7.1  -3.26471   TCATGCCGGATTACA               TGGCC ACGGA GGCCA               TTAGTATGAAGATAG  64 7
   Dhaf_1983 NONE
   Dhaf_1984 NONE
   Dhaf_1985 NONE
   Dhaf_1986 2138351 .. 2138380 + -13.5  -3.60805   AGAAAAATAACCAAA       GAGGGCGACTGGC AGAT GCCAGAAGCCCTC        TTTGCCATAGAGTAT 100 82
   Dhaf_1987 2139145 .. 2139159 +   -10  -3.00298   AAAAGAGTATGTAAA               GCAAGG AAG CCTTGC               TCTATAGTTGACCCC  73 53
   Dhaf_1990 2142326 .. 2142368 +  -5.4  -5.14563   TTTGAGATTTATACT GAGCTTGTTCAGGTGGCGCA AAA TGGGCATCCTGAGTCGGCTC TTTTTTGATGCGCCA  81 55
   Dhaf_1992 2146296 .. 2146337 +  -4.4  -3.12138   TCATTAGGCATGCTG CTGTCCGGAGGCAAAG GATTTCCTGG CTCCGCTTTCGGACAG  TGTGTGTGCTTTTTG  49 48
   Dhaf_1993 NONE
   Dhaf_1994 2148589 .. 2148600 +  -3.6  -3.69437   TGCGCTTATCCTTTG                CCCT GCAT GGGG                 TTAATTTTACCGTTC  53 376
   Dhaf_1996 2150365 .. 2150393 + -14.6  -4.59853   GAACAAATTAGCAAA        TGGCTGCTGCCT TAATC AGGCTGCAGCCA        TTTTTGAGAGATTGG 100 46
   Dhaf_1997 2151199 .. 2151238 + -18.8   -4.3255   AGCTAAGCGTGAATA  CCCGGGGCAAAACG-GATC GAT GATCATGTTTTGTCCCGGG  TTTATTGCTTGCGGG 100 59
   Dhaf_1998 NONE
   Dhaf_1999 2152898 .. 2152913 +  -8.2  -5.24989   CCTTATTCCTTAAAA              CGCCTC ACAG GGGGCG               TTTTTTCATGTGTGA 100 73
   Dhaf_2000 NONE
   Dhaf_2001 NONE
   Dhaf_2002 NONE
   Dhaf_2003 NONE
   Dhaf_2004 NONE
   Dhaf_2005 NONE
   Dhaf_2006 2159243 .. 2159269 + -10.2  -3.18031   AGACAAGTAAGCAAT         CCCCCTCAGA CTGAAGT TTTGAGGGGG         TGTAATTTTTGAGGG  77 39
   Dhaf_2007 NONE
   Dhaf_2008 2160659 .. 2160688 +  -5.7  -4.57569   GAAGAATTGACGGAA       TAAGCAATGGAGA TGTC TCTCCCATGCTTG        TTTTTAGAGCGGTGA  73 23
   Dhaf_2009 NONE
   Dhaf_2010 2162704 .. 2162744 +  -8.2  -2.89742   GGTTTAACATGACTT GCGAGAAGTCCCCCGTCCT CCAC AGG-CGGGGGATGAATCGC  TCTATGCGCATTCAC  64 412
   Dhaf_2011 NONE
   Dhaf_2012 2164457 .. 2164487 +  -6.9  -2.78712   ACTTTTGCCAAGAAG       CCCCCGCTT CTTAGCGAGGCGT AAGCGGGGG       TAGTTCACTTACGAG  57 154
   Dhaf_2013 2165463 .. 2165477 +  -9.2  -5.68438   GCCTATTTCTTAAAA               CGCCTC GCA GGGGCG               TTTTTTATTTACTAC 100 70
   Dhaf_2014 NONE
   Dhaf_2015 NONE
   Dhaf_2016 2170973 .. 2171014 +  -3.8  -2.72471   CTCTTCCTAAACAAA AGGACCGTTGC--AGCGAAT TGAT GTTCGTTGGGCAGCGGTCCG GTTATCTAGTCCGGG  44 61
   Dhaf_2017 NONE
   Dhaf_2018 2172294 .. 2172343 +  -8.8   -2.8007   TGTTCATTAGCTATA GAAAACACCTC-TATTCCTGGGT ATATC ACCTGGAAAAAAGAGGTGTTTTC TGGTTCATAACTTCA  67 87
   Dhaf_2019 2172823 .. 2172856 +  -7.6  -4.72486   AAACGGGAATATAAA     CAGCACTGCCTTTCA CAATC TGAAA-GCAATGCTG     TTTTTGCACTTTATA  86 45
   Dhaf_2020 2173427 .. 2173437 +  -3.2  -4.57569   CGCAAGCTTTAGAAG                 GAGG AGT CTTC                 TTTTTACAAACATGA  63 29
   Dhaf_2021 2173698 .. 2173723 + -11.3   -5.4477   CTAAATAATAAAAAA         TGAAGCAGGTT GTTT AACTTGCTTCA          TTTTTTTAGACCTTT 100 23
   Dhaf_2023 2174444 .. 2174482 +  -6.9  -4.89393   AATACCTGAAGTTTC  TGAGCCCTCTG--ATATCC CAT GGATATGGTAGAGGGCTCC  TTTTTATGCCGTTTG  82 75
   Dhaf_2024 2175489 .. 2175516 +  -5.6  -3.27704   TATAACGGTTTGATG        AATTTGCCCATA AATT TATGGGCAAAGA         TTAGATTTACAACAT  57 153
   Dhaf_2025 NONE
   Dhaf_2026 2176137 .. 2176164 + -15.6  -4.26076   AATAATTCGGAGGAG        CAAGGGGTGGTC AGTG GGCCGCCCCTTG         TTTTAATAAAAATAA 100 41
   Dhaf_2027 2176967 .. 2176988 +  -8.7  -3.00046   GTATTCCTGGCTGAG           GGGTGTGAG AATT CTTGCACCC            TAATATTATTTTTTG  68 315
   Dhaf_2028 NONE
   Dhaf_2029 2178614 .. 2178625 +  -3.6  -3.29471   TCAAAGACCCGCTTC                CGGT TGTT GCCG                 TTGATCTGGTAAGGA  49 2
   Dhaf_2030 2179138 .. 2179175 +  -6.4   -5.9003   AGAACAGCATGAAAA   TCCCTTGGTTCGAATG GTATAA TATTCGAATAAAGGGG    TTTTTTTCTTACTTT 100 152
   Dhaf_2031 2182911 .. 2182927 +  -5.1  -3.07895   ATATAAATCACTCAA              CTTTCGC AGC GCGAAAA              TCTGTTCAAACTCAG  53 230
   Dhaf_2032 2184555 .. 2184567 +    -2  -3.82117   ATTCAATCTTTCGAA                TTGA ATAAG TCAA                TCTTTTATCAATAGC  51 167
   Dhaf_2033 NONE
   Dhaf_2034 NONE
   Dhaf_2035 NONE
   Dhaf_2036 2193798 .. 2193832 + -14.4  -3.53722   CTGAGATATACAGAA     CGCCTTAAACAGAGCA AAA TCCTCTGTTCAAGGCG     TTCTGTGAATATCAC 100 58
   Dhaf_2037 2197537 .. 2197563 + -14.6  -4.91109   AAAAAATCAGCTCCT         GGGATTGTTTTG TAG CAAGACAATCCC         TTTTTATCATCGCCG 100 64
   Dhaf_2038 2198660 .. 2198688 + -11.7   -3.8647   CTGCCGATTCTCCGC        CGAGCCGAGCCTG CTT TAGGCTGGGCTTG        TTTCATGTGATAACT  95 63
   Dhaf_2039 2199883 .. 2199895 +  -5.5  -3.35679   TCCTCTCCCGGATAG                GATCC AGA GGGTC                TTATGCCTCCGGGGG  55 155
   Dhaf_2040 2200773 .. 2200785 +  -9.1  -3.48276   CCCTCTCCCGGAAAT                GACCC AGA GGGTC                TTATATCCCCGGGGG  71 157
   Dhaf_2044 2205085 .. 2205129 + -16.8  -4.42653   AGAGGGAAACCTTTA GAGGCTTATTCTAAGATTGCC GTCT GGT-ATCTTGGAATAAGCCTC TTTTATCCGTCAGAT 100 51
   Dhaf_2047 2210093 .. 2210132 + -10.2  -5.44119   AGGGAAACCTTTAGA  GGCTTATGCTAAGATTGCC GGC GGTA-TCTTGGAATAAGCC  TTTTTTTGGAATAAG 100 120
   Dhaf_2048 NONE
   Dhaf_2049 2212454 .. 2212477 +  -8.9  -3.20382   CTTATAAAACTTCAA          GGTAATCGC TTTTGT GCGGTTACC           TTGCTGCATATAAAA  69 80
   Dhaf_2050 NONE
   Dhaf_2051 NONE
   Dhaf_2052 NONE
   Dhaf_2053 NONE
   Dhaf_2054 NONE
   Dhaf_2055 NONE
   Dhaf_2056 NONE
   Dhaf_2057 NONE
   Dhaf_2058 NONE
   Dhaf_2059 NONE
   Dhaf_2060 NONE
   Dhaf_2061 NONE
   Dhaf_2062 NONE
   Dhaf_2063 2226484 .. 2226494 +    -4   -2.7263   TAAGATAAGACAAAA                 TTCA ATG TGAA                 ATTTAAGGAGGTCCT  45 33
   Dhaf_2064 2227592 .. 2227617 + -11.9  -3.12351   CCGGACACGGACCAA         GAAAGGGAACG GCTT CGTTCCCCTTC          TTACATATAAACGCA  86 43
   Dhaf_2065 NONE
   Dhaf_2066 2229753 .. 2229776 +  -2.4  -3.33798   AGGCAAAAGGATTAA          CAAAAGGATC AAAG GATCGATTTG           TATGTTTATGCCGCT  45 26
   Dhaf_2067 2230539 .. 2230581 + -12.2  -4.73432   GCCTTTAAGGTAAAG GAGAGTACCGCAGGACTA TTGGATC TAGTTTTGCCGTACTCTC TTTGTTTCTATTTAC 100 28
   Dhaf_2068 2231873 .. 2231914 + -13.9  -4.88295   CTGCAATAAGAAAAG GACCTGTGGAAA-CCCTTGC GGA GAAGGGGCTTTCTACAGGTC TTTTTGAGTTTGTTT 100 108
   Dhaf_2071 NONE
         eno NONE
   Dhaf_2073 NONE
   Dhaf_2074 2238234 .. 2238244 +  -3.2   -3.3692   GTGCCGTTACCGCTG                 GGGA TTT TCTC                 ATTTTTAGAATAGAA  47 2
   Dhaf_2075 NONE
   Dhaf_2076 NONE
   Dhaf_2077 NONE
   Dhaf_2078 2242260 .. 2242279 +  -8.5  -3.56836   TTTTACAACCCAAAA            GGCGTCC TTCGCT GGGCGCC             TTTCCACACTGGTTT  71 69
   Dhaf_2079 2243306 .. 2243338 + -16.4  -3.27022   CGTAGAATTTTGCAG      GCCTCACACCGG AAAGAAGAA CCGGTGTGAGGC      TTGATGTAAAATGAG 100 36
   Dhaf_2080 2244579 .. 2244619 +  -8.1  -3.23692   TCTTTGGTATAGAGG  GCGGCACGGGCGAAGACGG AAG CAGGCTTCCGTCGTGCTGC  TTCCTCATAGTAGTC  62 193
   Dhaf_2082 2247250 .. 2247305 + -12.2  -4.05033   ATTGACAAATCTGTC TTAAACTCATACTATATAATGGTCCA TATC TGGACTATTATATAGTATGAGGAGGA TTTCTATGCAATGGA 100 84
   Dhaf_2083 2247615 .. 2247630 +  -6.8  -3.21912   TAGTGGGTTTGAACC              TGGGCG GTAC CGCTCA               TTAATCAGTTGAGCA  59 6
   Dhaf_2084 2248159 .. 2248185 +  -8.8  -5.70829   AAGAGAACAGGTTAA         CTGCTTGGAA CAGCTCA TTCCAAGCGG         TTTTTTTATAGTGTT 100 41
   Dhaf_2085 NONE
   Dhaf_2086 2250416 .. 2250431 +  -4.7  -2.70476   TTATGATCGCCATGA              GAACG AAGGTG CGTTC               CTTATGATTAAACAT  48 3
   Dhaf_2087 NONE
   Dhaf_2088 2252329 .. 2252354 +  -7.7   -4.4648   TATCAAAAAGCAAAA         TCCCTCAAA ACACTGCG TTTGAGGGA          TTTTCTGCTCCAAAT  82 70
   Dhaf_2091 2254298 .. 2254324 +  -2.9  -4.08216   GGCAATCCCTTCGAT         GGCATTTTCAC GAGTA GGGTAGATGCC         TTTTCGCCAGCCTGG  56 417
   Dhaf_2094 2255903 .. 2255924 + -11.7  -2.52464   CAGTCCCCCTTGCCA           GATTGGCAA GCGC TTGCCAATC            TGAGTTACACACAGA  79 67
   Dhaf_2097 2261208 .. 2261223 +  -2.6  -3.17443   TCATTTGCGCATTAT              TTTCTT GACA AAGAAG               TCTATATTCTATAGA  44 71
   Dhaf_2098 NONE
   Dhaf_2099 2263973 .. 2263988 +  -6.2  -3.30124   GAATTTCATCGGCAT              GAGTTT TTTT AAACTC               TTCTAAAGCCTGGAA  57 506
   Dhaf_2102 2266249 .. 2266259 +    -4  -3.02745   ACAAATCTAAGGAGT                 TGAT TCA ATCA                 TGATTTATACCTGCA  47 31
   Dhaf_2103 2266819 .. 2266833 +  -4.3  -5.00616   CTATGCAATTTAAGC               TGTCA TCTCT TGACA               TTTTTTCGAAAAAAG  74 67
   Dhaf_2104 2269069 .. 2269105 + -18.9  -4.28774   CAAGGCTGACAAAAA    GCGCCTTTATCCCAC CATAAAA GTGGGATAAGGGCGC    TTTTGAGTTAAATAA 100 32
   Dhaf_2106 NONE
   Dhaf_2107 NONE
   Dhaf_2108 2275056 .. 2275079 +  -8.8  -5.47399   ATTAATAGAAAAAAC          CCGGCTCGAC GAAA GTTGAGCGGG           TTTTTTTCAGGTTGA 100 53
   Dhaf_2111 NONE
   Dhaf_2112 2280364 .. 2280408 +  -8.8  -4.15235   AAGTAGCATTAAAAG GCGTCTTT-AGGTTTCAATTG AATT CAATTGATTCTTTAAAGACGC TGTTTTTTGCACCTT  83 99
   Dhaf_2113 NONE
   Dhaf_2114 2282366 .. 2282402 + -19.6  -4.78149   AGTCTGATCGCAAAA    GAGGAAGACCTGCTCT GTTTA AGGGCGGGTCTTCCTC    TTTTTACATTGTCAG 100 97
   Dhaf_2118 2286556 .. 2286593 +   -15  -3.26433   CTCTTAATAGTAAAA   CAAACGGCGGACCGG ACTGTTGAA CCGG-CCGCCGTTTG   TTAATGGTCTGCTTA 100 34
   Dhaf_2120 2287560 .. 2287575 +  -6.2  -3.73294   CAAGAAAAATTTAAT              GAATTC CTAA GAATTC               TTTAGCGTATTTTTA  63 78
   Dhaf_2121 2288611 .. 2288642 +  -6.6  -4.66833   GACAGAATGAAGCAG      GCGCATGTGTAGGAT AAA AACCT-TGCATGCGC      TTTTTGACATTAGGA  79 183
   Dhaf_2122 NONE
   Dhaf_2123 2290570 .. 2290602 + -14.4  -2.61602   AGCATAAGACTTAAA     GAGACCATC-CAACA ATAC TGTTGAGATGGTCTC      TAACTTATACATTGA 100 70
   Dhaf_2125 2292357 .. 2292381 + -10.7  -5.31275   AAATACCATAAAAAA          TCGCCTTCTGC CGA GCATGAGGCGA          TTTTTTATGGTGCGC 100 54
   Dhaf_2127 NONE
   Dhaf_2128 NONE
   Dhaf_2129 2298585 .. 2298636 +  -9.1   -5.4148   TATACTTTTTTGAAC GATGGTTGATAATTTGGAGCATTTC TTGC GGAATG-TCCAAAT-GTCAGCCGTC TTTTTTGCTTATTTA 100 141
   Dhaf_2130 NONE
   Dhaf_2131 2299817 .. 2299830 +  -3.8  -3.22789   TTGAATTTGGCAACG               GTGG TGTTTT CCAC                TTAAGTTAGTATAAT  48 3
   Dhaf_2132 NONE
   Dhaf_2133 2301238 .. 2301254 +  -5.1  -3.07895   TCTTAACATACTCAA              CTTTCGC AGC GCGAAAA              TCTGTTCAAACTCAG  53 205
   Dhaf_2134 2302798 .. 2302814 +    -3  -3.15544   TAAATAGTTAGGAAG             CC-TCAG AGAG CTGATGG              TTGGTGAGAATCAGC  46 83
   Dhaf_2135 2302992 .. 2303020 +   -14  -5.75538   ATGGGTGGCACCACG        GTCCAATCGTCC CTTGA GGATGATTGGAC        TTTTTATTTTTTAAC 100 72
   Dhaf_2136 2304065 .. 2304097 + -16.5  -3.25223   CTGAGTTGGTATAAA      GGGCTATGTTTTCCA AGG TTGAAAACATAGCCC      TTACTAGTCTCACTA 100 37
   Dhaf_2137 2304586 .. 2304626 + -29.3  -2.81133   CATATAGAGTGCACA  GCCAAAGAACGGTGCGGAT TTC GTCCGCACCGTTCTTTGGC  TGTGCTCGCTGAGTC 100 312
   Dhaf_2139 2306006 .. 2306056 + -13.5  -3.09327   TTTATATATATTCAT GAATCATCAGAGTTAAAAGCCCGC GTAA GCGGGCTTTTAACTCT-ATGCCAC TGTTCAATACAATAA 100 57
   Dhaf_2141 NONE
   Dhaf_2142 2307611 .. 2307643 +   -13  -3.15861   TGGGTGGAATATAAA     GGGCTATGTTTTTCA AGGT TGAAAA-CATAGCCC      TTACTAAGGCTGATA  95 119
   Dhaf_2143 NONE
   Dhaf_2144 2309404 .. 2309422 + -13.2  -4.67697   TATAAAAAACCTTGA             CCCTCCAA CTA TTGGAGGG             TTTATTATTTTACCA 100 26
   Dhaf_2145 2310191 .. 2310208 +  -2.6  -5.38321   TTTCAAGTATTGAAA             GGGGGT TTGTTT ACCCCG              TTTTTTATGCTCTTT  76 85
   Dhaf_2146 2311236 .. 2311246 +  -8.2  -2.64933   GTATCGGTTACACTT                 GGGC GGT GCCC                 TGATATGGATACGTG  63 12
   Dhaf_2147 2312236 .. 2312264 +  -7.6  -5.07652   TTGTTGTGTTATCCT        GTCTGTATCA AGGAAAAAC TGATACAGAC        TTTTCTTTTGGAGGA  95 48
   Dhaf_2148 NONE
   Dhaf_2149 2315481 .. 2315517 + -18.1  -5.24129   GAGATGATGTTAAAA    CCGGCCTTTTGCGGGAG TGA TTCCCCCAAAAGGTCGG    TTTTTTCTACAAGGG 100 50
   Dhaf_2150 2316218 .. 2316230 +  -4.9  -2.88677   ATCAGCTGCACTTAA                GAAAA CAC TTTTC                TCGTCTTGTTCGTTT  47 166
   Dhaf_2153 2318942 .. 2318992 +  -7.7  -4.33151   CATCTTTTTTAGTAA GAGAGGCAAAGCATAGAGACACTC CGAA GAGTGTCTGTGT-CTAAGCTTCTC TTTTGCATTCTCATA  79 123
   Dhaf_2155 2321685 .. 2321711 +  -6.6  -4.74504   CAGGAAGGTATTGAC         CAAAGCCTATAG CAG CTATAGACTATG         TTTTTAAATTCCACT  79 79
   Dhaf_2156 NONE
   Dhaf_2157 2323374 .. 2323394 + -12.5   -5.3104   TGAACATTACCTGTC            TGCCCAGCC TTC GGCTGGGCC            TTTTATTTTTGCTAA 100 57
   Dhaf_2160 2326744 .. 2326755 +  -4.4  -3.34344   TTGTGGAGAGAAAAA                TCAG CAGG CTGA                 TTAATTAGAAGCTGA  51 6
   Dhaf_2161 NONE
   Dhaf_2162 NONE
   Dhaf_2163 NONE
   Dhaf_2164 NONE
   Dhaf_2165 2333073 .. 2333092 +   -15  -4.75308   GGCTTCTTTATAAAA            CGCCGGCT GCCC AGCCGGCG             TTTTTGGCTGTTCGT 100 53
   Dhaf_2166 NONE
   Dhaf_2167 NONE
   Dhaf_2168 NONE
   Dhaf_2169 2338933 .. 2338976 +  -3.9  -2.90219   GTGGAGAGGAGCAGG GCCAGAGAGCCGTCATCGGCCA ATT TGGCC-A-G-CAGCTCATTGGC TGTCTCCACATTGTA  45 473
   Dhaf_2172 NONE
   Dhaf_2173 2341307 .. 2341349 +  -9.4  -4.52873   GGAATTCCTATATGG CTCCTTGTTCTGTGCTTGA ATAATA TC-AGCACAAAATAAGGAG TTGTTTTTATGGCCC  95 66
   Dhaf_2174 2342407 .. 2342423 +  -2.9  -2.70476   TGCCAGATCGGAAGA              CAGTCTT AAA AAGGCCG              GTTATAGTTAGAGAT  41 100
   Dhaf_2175 NONE
   Dhaf_2176 2344242 .. 2344258 +  -5.1  -4.44046   AACGATGGTAAGGAG              TCCAAGC CTT GCTTTGA              TTTGTTTAACCTGAA  70 131
   Dhaf_2177 2346030 .. 2346049 + -12.2  -2.53995   TTTACTTTTTGCTGT            CACTCCTC GTAT GAGGAGTG             TGGATTGAAATAGGT  81 222
   Dhaf_2179 NONE
   Dhaf_2180 NONE
   Dhaf_2181 2352983 .. 2353020 + -15.1  -3.11361   AAGCTTATGAAGTAA   AATTTCAGCACAGACTG CAGT TAGTCTGTGCTGAAATC    TATCTCTTGAAGTTT 100 26
   Dhaf_2183 NONE
   Dhaf_2184 NONE
   Dhaf_2185 2357418 .. 2357428 +  -2.4  -3.03701   GAGCTCAGCAACCGA                 CCTG ATG CTGG                 TATGATTTACTACGC  42 10
   Dhaf_2186 NONE
   Dhaf_2187 NONE
   Dhaf_2188 NONE
   Dhaf_2189 2362080 .. 2362090 +  -2.4  -3.97947   GAGGGTTGAAATCGG                 GCAG TGC CGGC                 TTTGTACTCCATCCA  53 433
   Dhaf_2192 NONE
   Dhaf_2193 NONE
   Dhaf_2194 NONE
   Dhaf_2195 2373286 .. 2373336 + -10.9  -2.87132   GGACGAGGACAGAAT GACAAAAGCAAG-CTATACTGTATT GAA GAT-TAGTGTAGGCTTGCTTTTGTC TATGTACGGCAAACC  77 113
   Dhaf_2196 2374733 .. 2374768 + -10.6  -4.65895   CCTTAATAAACCAAA    CCCTGATTAAAGAACT GACA AGTTGATTAATCAGGG     TTTTTAGCTAAGCAA 100 73
   Dhaf_2197 NONE
   Dhaf_2198 NONE
   Dhaf_2199 NONE
   Dhaf_2200 NONE
   Dhaf_2201 2381060 .. 2381089 +  -9.9   -4.4078   GAAAAGGCGGCAAAA       GACGACAACCGGC GGAA GCTGGAAGTCGTC        TTTTGCTTAAAAGAA  93 81
   Dhaf_2203 2383691 .. 2383701 +  -4.6  -2.92653   ATCGCAGCGAAAAAT                 GCTG CCG CGGC                 TCTGTAAAGTTGTCC  50 8
   Dhaf_2204 2384345 .. 2384386 + -17.6  -3.28712   ATGATTAGAATAGAA GACAGAAAAGGCTGTGAGT TGACT GCTC-CAGCCTTTTCTGTC TTCTACGCCAAGCGC 100 185
   Dhaf_2207 NONE
   Dhaf_2210 2387957 .. 2387968 +  -4.4  -2.71144   AAGTATCGGCTAAAT                TCAC CAGT GTGA                 TGATTAAACAGGATG  45 28
   Dhaf_2217 2396263 .. 2396276 +  -2.3  -3.08508   CAGCCCCAGCCATAG               TGGCT GATG AGCCC                TGCTTTTCGCCCATG  43 19
   Dhaf_2218 2397213 .. 2397229 + -12.3  -3.14848   GCCTCTGAAGGTTAT              CCGCTGA TTG TCAGCGG              CTTTTGGTCAAAACA  93 19
   Dhaf_2220 2401172 .. 2401201 + -11.5  -4.53703   ATGATGGGATTTTAG       GCGCATTTTCGAT TGTG AGCGAAAGTGCGC        TTTTGCTATTGTTTT 100 426
   Dhaf_2221 2401978 .. 2401989 +    -3  -2.69871   AGGATAAGATGACTA                CTTT TTTG AAAG                 CTATTTGATGTGGGG  42 6
   Dhaf_2222 NONE
   Dhaf_2223 NONE
   Dhaf_2224 NONE
   Dhaf_2225 2405783 .. 2405797 +  -4.2  -3.14468   AAAGTAAGGGAAGCA               GTTCTG GTG CAGGGC               TTCGCTGTGATCGGC  49 34
   Dhaf_2226 NONE
   Dhaf_2227 NONE
   Dhaf_2228 NONE
   Dhaf_2229 2409280 .. 2409323 + -15.6  -2.66271   CTTCTTTTGCTTAAA GAAGCGGCCTATATTTCAC GATAAAA GTGGAATA-AGGCCGCTTC ATATTTACCCTTTGT 100 141
   Dhaf_2234 NONE
   Dhaf_2235 2415629 .. 2415652 + -10.3  -4.01158   ATAGACTAAAAGATG          GGAGCTGTC GCTGAA GGCAGCTCC           TTATTTGATCACCTT  89 54
   Dhaf_2236 2416039 .. 2416061 +  -6.2  -3.53012   GCTGATTCCCAGTCA           GATGACGGCC TCC GGTCATCGTC           TTTACAACGAAAACG  61 147
   Dhaf_2238 2417643 .. 2417653 +  -3.2  -3.53444   CAAGATCATTTGAAA                 GCTT TGC AGGC                 TTTCCAAAACAATCA  50 434
   Dhaf_2241 2420463 .. 2420473 +  -5.4  -3.03124   GGTTTACCATGATTC                 TCAC AAA GTGA                 TATTGCCAGATAGCA  52 268
   Dhaf_2242 2421610 .. 2421639 + -18.1  -5.44119   ATAATTACAAAGAGT       TGCCTTGAATTGG TTGT CCAATTCAAGGCA        TTTTTTTGCGCTAAA 100 49
   Dhaf_2244 NONE
   Dhaf_2245 NONE
   Dhaf_2246 NONE
   Dhaf_2251 NONE
   Dhaf_2252 NONE
   Dhaf_2261 NONE
   Dhaf_2262 NONE
   Dhaf_2263 2442195 .. 2442229 + -14.5  -4.87807   CCAGCCCTATGAGTA     TCAAGCCCTATTCAT GGCAA ATGAACAGGGCTTGA     TTTTTACTATGTTGA 100 46
   Dhaf_2264 NONE
   Dhaf_2265 NONE
   Dhaf_2266 2448564 .. 2448591 + -17.2  -4.67982   CCCTTCACTGGTCCA        TAAGCCATCCTG AGCT CAGGATGGCTTA         TTTTGTTGCCTCAGA 100 41
   Dhaf_2267 2449701 .. 2449739 + -18.4  -4.90002   AAGGATAATAAGAAA   GACTTAGTGATCAGGGAA CGG TTCTCTGACCACTAAGTC   TTTTATTGTATATTG 100 93
   Dhaf_2268 NONE
   Dhaf_2269 2452673 .. 2452711 + -12.7  -5.00884   TAAGGCCGGCACTGA  CAAACTCAGTAT-CCTGA TTAA TCGGGGATACTGGGTTTG   TTTTTTGCACAGAGT 100 38
   Dhaf_2270 2454194 .. 2454216 + -11.4  -4.89521   AATTCTCAGGTAAAG           CAGAACTCTT TTT AAGGGTTCTG           TTTTCTTTACACTGT 100 65
   Dhaf_2271 NONE
   Dhaf_2272 NONE
   Dhaf_2273 2458125 .. 2458157 +  -8.6  -4.18161   AAAGACTGCTTTAAA     GAGAGTGAATCTACC TTCG GGTAAA-TCACTCTC      TTTTGGCAATTTATG  79 61
   Dhaf_2274 2458723 .. 2458770 + -20.3  -2.87211   TTCGGTTATCTATTA TAACG-AAGCCCCTCAGGATAT GTTTG ATATCTTGAGGGGCTTTCGTTA TATATAAAAAAAGAT 100 42
   Dhaf_2275 NONE
   Dhaf_2276 NONE
   Dhaf_2277 2460742 .. 2460771 +  -7.9  -4.78848   GAGCCGTTGAAGAGG       AGGATCTTTGGAC TGAT GTTCAGAGATCCC        TTTTGTGTTTGAGGA  91 63
   Dhaf_2278 NONE
   Dhaf_2279 NONE
   Dhaf_2280 2464712 .. 2464723 +  -2.2  -4.32046   AAGGCTTTCGGTACA                TCCA ACAC TGGG                 TTTGATTTTTAAAAC  58 2
   Dhaf_2281 NONE
   Dhaf_2282 2466738 .. 2466766 + -11.7  -4.31293   CATATGCATGCAAAA        GGAGCCGCGACAG CAG TTGTTGCAGCTCC        TTTATTCATATCTCA 100 69
   Dhaf_2287 2471058 .. 2471091 + -21.9  -4.12738   AGGCACATTATACAG     GCAGGCTGTAAGGGC ATAG GTCCTTACAGCCTGC      TTTAATTTAATGTAA 100 52
   Dhaf_2289 2473367 .. 2473380 +  -2.3  -2.98607   AAAAATGTGGAAAAG               GGCTA TCTG TTGCC                TGGTCTTTCTTTGGA  42 53
   Dhaf_2290 2476439 .. 2476449 +    -4  -2.66118   AGAAAAAATCTATGA                 GAAA AAC TTTC                 TGGATTCGTTTTAAG  45 1
   Dhaf_2291 2476975 .. 2477013 +  -5.3  -3.16813   AATAAGATGGGATTA  GCCCCAGAGACCTTTG AGTTGATA CAAAGGGG-CTGGGGC   ATTTCTTAGTAATTC  53 47
   Dhaf_2292 NONE
   Dhaf_2293 2478156 .. 2478182 +  -7.2  -3.14463   CCACCCCGATGAAAG         GAGCCAGGGCAT AAT AGGCGCTGGTTC         TTGCTGCACCCAATT  60 303
   Dhaf_2296 2480979 .. 2481001 +  -8.4  -4.62069   TAATGTTTTATAAAA           CCGGCTACAT TCA ATGCAGTCGG           TTTTGTCCTGTTTTT  91 74
   Dhaf_2297 NONE
   Dhaf_2298 2482622 .. 2482656 + -12.4   -5.0538   GACTAGATATGAAAG    CACCCTCAAGACTTT ACTGCC AAAG-CTTGAGGGTG     TTTTTTGCCCTAACG 100 41
   Dhaf_2300 NONE
   Dhaf_2301 NONE
   Dhaf_2302 2487455 .. 2487472 +  -8.5  -3.83502   TAAGAAGAGTTGAAA             TTCGACA CCAG TGTCGAA              TTTCATGTCAAGCTC  75 82
   Dhaf_2303 NONE
   Dhaf_2304 2488769 .. 2488805 + -14.5  -4.96848   ATAAGTGTATAAAAA    GAACCACGAGGCTGTGC TCA GGACAGATTCGTGGTTC    TTTTTATATAAAGGC 100 61
   Dhaf_2305 NONE
   Dhaf_2306 NONE
   Dhaf_2307 2492365 .. 2492413 +  -6.1  -4.76892   ATTAGCTAGTTAAAA CCCCCTG-GGC-T-ATC-CCGGTGC ATT GCACTGGAGGGGATGCCGCAGGGGG TTTTTAACTTCCTAT  80 73
   Dhaf_2311 2497027 .. 2497075 +  -4.2  -5.27335   CTGAAACGTCATTAT AAAACAAAGACTTACTCT AAAACGTAAGAAA AGAGTAAGTTTTTGTTTA TTTTTATTTAAGAAA  81 84
   Dhaf_2312 2499482 .. 2499502 + -11.2  -4.15029   ATAGACAGACCGTAA            CCCGAAGA CCATC TCTTCGGG            TTCTTTATCTGGAGT  93 44
   Dhaf_2313 2502708 .. 2502736 + -11.1  -4.84311   CTAAGCTCGAAAGCG        CAGCTGTAGACAG TTA TTGTCTATGGCTG        TTTTATTGTCTAAAA 100 71
   Dhaf_2314 2503821 .. 2503863 +  -2.2   -4.3587   ACTTCTGGATGAGAA GGGGCTGATGC--AA-GAACT GCGA AGTTCATTGAGCAACAGCCTC TTTGTATTGTTAATC  58 55
   Dhaf_2315 NONE
   Dhaf_2316 2504561 .. 2504575 +    -5  -2.81547   GTAGTGTCAGGTTTT               TAAGGT GAT GCCTTA               TCGTTGATATAACCG  49 37
   Dhaf_2317 2505944 .. 2505988 +  -6.4   -3.4684   CATTCCGGCACAAAC GTGAGCCCCGGGTATTC-CGCC TTC GGCGAGAATTCCTTCGGC-CAC TTCATTAATATTCTC  61 445
   Dhaf_2319 NONE
   Dhaf_2320 NONE
   Dhaf_2321 2508919 .. 2508931 +  -3.3  -4.11692   TATGATGCAGCACTT                GGGGA ACA TCACC                TTTTCCCCATGAGTA  58 167
   Dhaf_2324 2512140 .. 2512178 + -19.9  -3.39142   CCCGGCAAAGAAGAG  GGAGCCGCAA-ACGTTTA GGCA TAAACGTTTTGCGGCTCC   TTCCTTAGGTATAGG 100 46
   Dhaf_2325 2512664 .. 2512676 +  -3.3  -3.45324   GTTTGGCAGTAGAGC                CCCTT TAC ACGGG                TGTTTAGTCAGCCTC  49 6
   Dhaf_2327 2514849 .. 2514880 +  -5.1  -4.82901   ATTTGCCTCATGGCT      CGCTGGCTTCCAT TTATGC ATGGAAGCTTGCC       TTTTTATAGCAGCAG  75 102
   Dhaf_2328 2516002 .. 2516034 +  -8.3  -4.52589   GGGAAGATAACAAAA      GACGGCGGCTGGTTT AAA ATGCCAGAAGCCGTC      TTTTCTGTAAACAGG  87 163
   Dhaf_2332 NONE
   Dhaf_2333 NONE
   Dhaf_2334 NONE
   Dhaf_2335 2522672 .. 2522713 + -19.7  -3.96148   TACGTTATTTAGGAA TCTAAGTCCCTTCCTGC AGGTTCAA GCAGGAGGGGACTTAGA  TTTATGGTAGAGGAG 100 194
   Dhaf_2339 2528816 .. 2528830 +  -4.2  -3.37634   CTGTAAAAAGGCTTT               CTGATC GTC GAGCAG               CTTTTTGACCTCATC  50 498
   Dhaf_2347 2537989 .. 2538005 +  -4.4  -3.57971   ATTAATAAAGGCTGG              TGTTGG GTATG CCAACG              TTTCGCAATACATGT  54 55
   Dhaf_2348 NONE
   Dhaf_2349 NONE
   Dhaf_2350 2540939 .. 2540963 + -15.8  -3.72231   TTTGTCCACAGTCCG          GGAGGAGGGT ACAAC ACCCTCCTCC          TTATTACGTGTATAG 100 50
   Dhaf_2352 NONE
   Dhaf_2353 2543587 .. 2543604 + -12.7  -4.49389   AGGAGAAAAAAAGGA             CCGAGGC CGCA GCCTCGG              TTTTCCTTATAGGCT 100 252
   Dhaf_2356 2545229 .. 2545274 +   -15  -2.71712   AATAGCTCATTAAGA CGTGAAACGACCTCTTTACT CAAAAC AGTAAGGAGGTCGTTTTAGG CTTTACCCCAGAGGG 100 55
   Dhaf_2364 NONE
   Dhaf_2365 NONE
   Dhaf_2366 2555549 .. 2555575 +  -8.6  -3.75105   TTTCGCCGGCATCAA         TCCGGCGGGAGT CAG GCTCCCGATGGG         TTCTTGATGAGTTCC  75 53
   Dhaf_2367 NONE
   Dhaf_2368 NONE
   Dhaf_2369 NONE
   Dhaf_2370 NONE
   Dhaf_2371 2559970 .. 2560010 +  -4.9  -3.60296   AATACAGGAATTAAA GGAGGGGCT-GTGAAA ATAAAAAAGA TTTCATGAGCCCCTTC  TTTAAACTGGCAATG  57 40
   Dhaf_2372 2561486 .. 2561506 +  -4.7  -4.98255   ATGGAAAAGATTAAA            GAGGGCA GAAATAG TGTCCTC            TTTTTGTAATTGCAG  77 68
   Dhaf_2373 2563735 .. 2563778 +  -6.2  -3.05816   CTAAGGAAGGACCCA GTGCCGCTTTAGCA-TAAGC AGAGAA GCTTAATGAT-AGGCGGCAC TTAGGTAAGGGGTGA  56 74
   Dhaf_2377 NONE
   Dhaf_2378 2569884 .. 2569909 + -12.5  -2.78596   ATTAGGAAAGACGGA         GCTGCGGGGGC GGGC GCCTGCGCAGC          TCTGATGCGGAGGTC  89 55
   Dhaf_2379 2570156 .. 2570209 +   -14  -2.97051   AAAATAATAGTAATA AGTAGGAGCCTCCCGGCACAAGAAA AGAAA TATCTTGTACCGGGAGGCT-CTGCG GTTTATAGCGTTTAT 100 62
   Dhaf_2382 NONE
   Dhaf_2383 2576190 .. 2576208 +  -8.1  -4.38141   TTTCGACTGAATCAG             CCCTGCT TTAGC AGCGGGG             TTCTTTTCTGTAAAC  79 31
   Dhaf_2385 2578682 .. 2578698 +  -2.9  -5.04601   GGTTGCTGTTGGTGT              TCTGCAG GGC CTGGGGA              TTTTTGATTTCTACG  74 285
   Dhaf_2387 NONE
   Dhaf_2388 NONE
        mscL 2582249 .. 2582267 +  -2.3  -4.88918   TCCAACCCGACTCCA             CTGCGTG CTTTT CGCGAAG             TTTTGTTTCCGCTCG  66 178
   Dhaf_2391 NONE
   Dhaf_2392 2585639 .. 2585656 + -12.7  -3.63627   ACTGTGCTTTGTTAA             GGGACCC GCCG GGGTCCC              TTTGCACTATCAGAA 100 26
   Dhaf_2393 NONE
   Dhaf_2394 2587923 .. 2587940 +  -3.4  -2.57344   CCTATTTTAGGGCGA             CCAAGT AAATGC GCTTGG              ATTATGGGGGGAGTC  42 18
   Dhaf_2395 2588407 .. 2588434 +  -9.3  -4.68209   AAAAGAGAGAAGTGA        GGACTTTGAAT AGCTGG ATTCAGAGTCC         TTTGTTTATTAGCGT 100 114
   Dhaf_2396 2589697 .. 2589726 + -13.5  -4.14243   AAAAAAATAAGAAAA       GAGGGCGACTGGC AGAT GCCAGAAGCCCTC        TTTTGCCGTAAAATA 100 156
   Dhaf_2397 2591467 .. 2591512 + -10.4   -4.0014   TTTCCTCAAGAAAAA GAGGGGGCCGCATTACGTTT TCTCAC AAACGTTTTGCGACACCCTC TTCCTTTTTTATGGT  89 139
   Dhaf_2398 2592378 .. 2592396 +  -4.5  -5.09521   AAGATAGGGGGGAAA             GCTTGGC TATAT GCTGAGC             TTTTTGATTTGTTGA  80 90
   Dhaf_2399 2593147 .. 2593173 + -10.3  -4.93877   CTGTGCCTTTTGGCA         GGACTTGAATC ACTGC GATTTAAGTCC         TTTTGTTTAGTCAGC 100 49
   Dhaf_2401 NONE
   Dhaf_2402 2594777 .. 2594828 + -19.8  -4.14397   AGCTCCTCAATAAAA CTACGCTGGAATGTAC-CAAGAACG CGA TGTTCCTGGGTATATTCCAGCGTAG TTTGCTTTATACAGT 100 63
   Dhaf_2405 NONE
   Dhaf_2406 NONE
   Dhaf_2407 2599145 .. 2599165 +  -5.4  -5.30686   GAGTTATTGTTTTAA            TACCTGCC GTTTA GGTGGGTA            TTTTTTATGGGTGTT  84 67
   Dhaf_2408 2599726 .. 2599738 +  -4.8  -2.93164   AATATGCCTTTCAGA                CCAC CGGAT GTGG                TATAATTGAGTCTGA  50 103
   Dhaf_2409 2601126 .. 2601145 +  -6.4  -4.51743   TTAAATAGGGGAAAA            GGCCTTGA GTTA TCAGGGTC             TTTCTTTCATAATGG  74 53
   Dhaf_2410 NONE
        coaD 2605414 .. 2605426 +  -7.7   -3.2614   CTGGTCTTTAAATTA                GTACC TAT GGTAC                TTAATCTACAGAATA  66 99
   Dhaf_2412 NONE
   Dhaf_2413 NONE
   Dhaf_2414 2607725 .. 2607745 + -11.9  -5.80003   CAATCGAAAAGCCAA            TCCCTGCAG ACA TTGCAGGGA            TTTTTTATTTCTTCG 100 194
   Dhaf_2416 2609228 .. 2609255 + -15.7  -4.69027   ATCCGTGCCTTTCGA        GGGCTTCCACT ATAAAA AGTGGAAGCCC         TTTTTCCGTAGATTT 100 459
   Dhaf_2417 2610215 .. 2610258 +   -16  -4.87318   AAAAACTACACTCAA GGGCCGGAGAACCGGGGCGT AAAA ACGTCTCCATTCTCCGGCTC TTTTTGCGTTTTGGA 100 75
   Dhaf_2418 NONE
   Dhaf_2419 NONE
   Dhaf_2420 2612918 .. 2612928 +  -2.4  -2.53736   ATAGCCTCCCTTGAA                 AGCG GAG CGCC                 GATTTGTTGATTTAT  39 37
   Dhaf_2421 NONE
   Dhaf_2422 NONE
   Dhaf_2423 2615823 .. 2615850 +  -9.9  -4.14013   TGACAGTTAAGCAAA        GTCTGCCCTTT ATACTC GGAGGGCAGAC         TTTTGCGCAATTTTA  88 140
   Dhaf_2427 NONE
   Dhaf_2428 2622165 .. 2622177 +  -3.3  -3.21934   GAAAAAATCATGTTT                CGTGC GGC GGACG                GTTTTCTGCGGCAGG  46 91
   Dhaf_2429 2622734 .. 2622758 + -17.2  -4.07568   AATCTCATGGCAAAA          GCGGATGCGG AACAC CCGCATCCGC          TTTTGCAAAAAGGAG 100 78
   Dhaf_2430 NONE
   Dhaf_2431 NONE
   Dhaf_2432 NONE
   Dhaf_2433 NONE
   Dhaf_2434 2633121 .. 2633151 +   -14  -5.63517   TGCAAGGTTAAAAAA       GTCAGCACTTTGCC GTG GGCATCGTGCTGAC       TTTTTTCTTTCGACA 100 347
   Dhaf_2435 2634012 .. 2634028 + -12.3  -3.07043   CATCCGACCGGAAAA              CAGGCTG TGG CAGCCTG              TCTTGCAATGATCCC  93 302
   Dhaf_2436 NONE
   Dhaf_2437 NONE
   Dhaf_2438 NONE
   Dhaf_2439 NONE
   Dhaf_2440 NONE
   Dhaf_2441 NONE
   Dhaf_2442 NONE
   Dhaf_2443 NONE
   Dhaf_2444 NONE
   Dhaf_2445 NONE
   Dhaf_2446 2642921 .. 2642954 +    -9  -5.46657   GTATAATTATAACGA     CGGTTTGAACGA TTTGAATTCT TCGTTCAAGCCG      TTTTTTATTAAGATG 100 341
   Dhaf_2447 2643259 .. 2643291 +  -7.8  -4.84311   CTATTATTTCAGAAA      GACATGCTTTCTTC GCTAA GGGGAAGGTATGTC      TTTTCTTATGTAGAA  91 73
   Dhaf_2448 2643977 .. 2643997 +  -2.5  -3.60098   ATATTTTGTGGATAA            TGGGAAGTC GAA GAATTCCAA            TTTGAACTGCGGACT  50 42
   Dhaf_2449 NONE
   Dhaf_2450 2645469 .. 2645504 + -11.5  -5.30616   CATCATGATGCCAAA    GAAACCGAT-AATTTC GGCAG GAAATTTATCGGTTTC    TTTTTGTTTCCCTAA 100 103
   Dhaf_2451 2646106 .. 2646137 +  -3.1  -5.24129   CTATTTTTCCAGAAA      GGTATAATTTTCC GGCAAA GGGGAGTTATATC       TTTTTTGTACAGGAA  75 127
   Dhaf_2452 2647633 .. 2647663 + -12.6  -5.95539   GTTTAATCATCGCAA       CGGTTTGAACGATG GAT CTTCGTTCAGGCCG       TTTTTTTGTTTGCCG 100 188
   Dhaf_2453 NONE
   Dhaf_2454 NONE
   Dhaf_2455 NONE
   Dhaf_2456 2653042 .. 2653086 + -16.8  -3.18728   CTTTCTTGAGTAATC TAATAGAGGGGTTTGC-TTCT TACT AGAAAGCAAACCCCTCTATGA TTACATGTTCAGAAT 100 156
   Dhaf_2457 NONE
   Dhaf_2458 2654987 .. 2655013 +  -5.2  -5.42514   GATCTAAAAATGAAG         TCATCCTCAT CTTCATC ATGGGGGTGA         TTTTTTAATTTCTAA  87 63
   Dhaf_2459 NONE
        tnaA 2658071 .. 2658123 +   -21  -3.25102   AAACCTTGTCTTGTC GGC-CAAAGGGGGTTTTGGAATGAA TTAT TTCGTTTCAAAACCCCCTTTGCGTC TATTCTCCGTCAAAT 100 66
   Dhaf_2461 2658755 .. 2658784 + -13.5  -4.68705   TAGGGAAAAGCCACA       GGCAGCCCAACTC AAGC GAGGAGGGCTGCC        TTTTATTGCGATTAT 100 47
   Dhaf_2462 2660198 .. 2660235 + -17.3  -4.05747   TAGGGTTCAATTAAA   TAGGGTATCAGAACCTA TTCT TAAGTTCTGATACCCTA    TTTGTCTACAGTCTG 100 90
   Dhaf_2464 2661379 .. 2661425 +  -8.2  -5.14819   GAGAGTTAAGAATAA G-GAGACACTTTGCTTCCTCCA GGGAA TGGATGG-GCAGAGTGTCTCAC TTTGTTTTTTACTTT 100 32
   Dhaf_2468 NONE
   Dhaf_2469 2667182 .. 2667206 + -13.7  -3.86015   TCCTGCCTCATAGCG          GGTTGGAAACG TCC TGTTTCCAACC          TTTCTCCGCAGAGTG 100 179
   Dhaf_2470 NONE
   Dhaf_2471 2670336 .. 2670353 +  -3.5  -3.92178   CCATGCTTATTCTCA             TC-GCTTT GGG AAAGCTGA             TTTGATTACAATAAT  58 3
   Dhaf_2472 2671020 .. 2671044 +  -4.3  -3.69702   TCAGAATAGGTCTTG          CAATAGGTCTA ACT TAGGTCTATCG          TTCTATTCCGTAATA  54 55
   Dhaf_2473 2671757 .. 2671778 + -10.1   -5.1675   CTTTATGGTGAAAAA           CCACGCCTC AAAT GAAGCGTGG            TTTTTTGCTGGATGA 100 11
   Dhaf_2475 2673331 .. 2673371 + -11.3  -4.24204   CTCTCATAAGTAAAG GCCCGCCCC-AATATGAA TAAACC TTCGTATTAGGGGCGGCC  TTTTAGCTATAAATC 100 59
   Dhaf_2476 NONE
   Dhaf_2477 2675100 .. 2675139 + -12.2  -4.30719   TGCCCAATAAGAAAA  GGCAGTTGCCAAGAAACT TTAA AGTTCACTGGCAACTGCC   TTTCTTCTCAGGCAC 100 68
   Dhaf_2480 NONE
   Dhaf_2481 NONE
   Dhaf_2482 NONE
   Dhaf_2483 2682832 .. 2682849 +  -4.9   -4.1337   GCCTAAGTTGCCGTT             TTCTGTT GTAC AACAGGA              TTCTTTGTGCTATCA  63 92
   Dhaf_2484 2684170 .. 2684201 + -13.9  -2.75022   TTTATCAGATAATGA      CATGCGCTTTGTT TGTAAT GACAAAGCGCATG       GTTCTATATAAGAGG  95 197
   Dhaf_2485 2685478 .. 2685490 +  -3.3  -3.27475   ACCGGGGAAATCTCA                CATCC AGA GGAGG                TATTATAATGGCCAA  47 5
   Dhaf_2486 NONE
   Dhaf_2487 2687116 .. 2687151 + -15.6  -3.55622   ATATAATATGCTCAC    CGCAAAGCCCCAGGG TCATTAT CCCTGGGGCTTT-CG    TTTACCCCGGTTCGC 100 104
   Dhaf_2490 NONE
   Dhaf_2491 NONE
   Dhaf_2492 NONE
   Dhaf_2493 2692623 .. 2692646 +  -5.2  -4.40173   TATTTCTTTAATCAG          GAGTGTGGAT GCTA AGCCACCCTC           TCTTTTTTTGCGTTA  68 143
   Dhaf_2500 NONE
   Dhaf_2501 2702553 .. 2702566 +  -2.3  -4.91084   GATCGAATGAATCAA               GGGGA CAGG TCCCG                TTTTTCAGTTTTCTT  66 31
        proA 2704021 .. 2704076 + -13.6  -3.62518   TATCATGGAAGAATA GCCAGCGAAGAGAAGCAGGTGTGTCA CACCCC TTACACACCTGCTTCTCT-C-CTGTC TTTAGCACTCTTTCC 100 126
   Dhaf_2505 NONE
   Dhaf_2506 2707819 .. 2707829 +    -4  -3.24925   GACTTTATCGGCAAG                 GATA GTG TATC                 TTCATCATGTAAAGT  51 127
   Dhaf_2507 2710049 .. 2710076 + -18.6  -4.88918   CTAAAGGACCCATCA        CCAGACCTCAGA GCAA TCTGAGGTCTGG         TTTTATTTGCAATGC 100 115
   Dhaf_2508 2710543 .. 2710582 + -17.6  -3.88498   ATGAAACAATAACGA  TAAACCAGACCTTTCAACT CAT AGTT-AAAGGTCTGGTTTA  TTTACTCTGTGGCAA 100 48
   Dhaf_2509 2712891 .. 2712927 + -11.7  -4.72486   GTAATCTCAAGATAA   GGGCTTCT-CCTGAAC AGCTGA GTGCAGGGAGAAGCCC    TTTTTGCCGTTTATA 100 48
   Dhaf_2510 NONE
   Dhaf_2511 NONE
   Dhaf_2512 NONE
   Dhaf_2513 2716288 .. 2716334 + -15.2  -2.72013   AGTAGACTTACAATA GGTTAGGGTCAGGATCCCTGTG GTT CATGGGGATCTTGATCCTCCCC GTTGATTATTCCAAT 100 36
   Dhaf_2514 NONE
   Dhaf_2515 NONE
   Dhaf_2516 2720831 .. 2720858 + -11.4  -4.88736   TGCAGAAAGCAGCGA        TCTGGCGGGCGAT GTT AT-GCCCGTCAGA        TTTTTATGACTGCTC 100 103
   Dhaf_2517 2722246 .. 2722266 +  -9.8  -5.36441   ATATGTTTATTAGAA            TACAGACC TACCC GGTCTGTA            TTTTTTATATCCGCC 100 218
   Dhaf_2518 NONE
   Dhaf_2519 NONE
   Dhaf_2520 NONE
   Dhaf_2521 NONE
   Dhaf_2522 2726861 .. 2726888 +  -5.6  -5.19261   ATCCAAGCCTTTCGA        GGGCTTCCAC GATGAAAA GTGGAAGTTC         TTTTTTCGTAGATTT  85 305
   Dhaf_2524 2728428 .. 2728459 +  -5.9  -4.87803   CATCTTTACAAAAAA      GACATAGCTTTTC ACCAAG GAATTGCTATGTC       TTTTCTTTAACGATA  78 195
   Dhaf_2525 2729160 .. 2729211 + -10.4   -3.4072   CCGGAGGCCTTGTGT CATGAGGGAATTGTTTGCTCAA-AG TTT CTATTGAGCAAACACATCCTTGATG TTATAATAAAACGTA  80 70
   Dhaf_2526 NONE
   Dhaf_2527 2731653 .. 2731667 +  -7.2  -3.27476   TATAAAATTTCGGAA               TGATAC TAT GTATCA               TTGGTAATTGGAGGT  64 36
   Dhaf_2528 NONE
   Dhaf_2529 NONE
   Dhaf_2530 NONE
   Dhaf_2531 2736174 .. 2736230 + -24.1  -3.06133   TTATGTCTAAACGCA CATAATCCAAACCCTTCATCAACAGGT AAA ATCTGCTGGCGAAGGGTTTGGATTATG TTACATAAAAAATTC 100 21
   Dhaf_2532 2737217 .. 2737234 +    -4  -3.06991   GATTGAGATTTAAGG             CAGGCC AGCTGC GGCCGG              ATTTTAAAAATGGTC  47 28
   Dhaf_2533 2738518 .. 2738530 +  -9.1  -5.96219   GAGGCACCTTTTTCA                GGAGG AGG CCTCC                TTTTTTTTCTGCCTC 100 149
   Dhaf_2535 2741305 .. 2741331 +    -8  -2.80966   AATACGTCATTGTCG         GCGGTTCCACAG CCC TTTTGGAACTGC         TCCTATTCCTTGGCT  61 89
   Dhaf_2536 2741934 .. 2741951 +  -6.3  -4.14541   ATTTGAAAAAGCAAG             GCTTTCG TGGG TGAAAGC              TTTATGTAGTTAGTC  71 323
   Dhaf_2538 2744411 .. 2744433 +  -7.7  -3.76402   AATAATCAAAGGGAT           GAGGGCC AAAGCTTCC GGCCCTC           TTTCCTGACTCGACT  72 47
   Dhaf_2539 2745458 .. 2745476 +  -4.6  -2.73459   ACAGAATCGATTACG             GATGATGG CAC TTATCATC             ATGTTTCTGGCTATC  48 85
   Dhaf_2540 2746059 .. 2746099 + -11.4   -5.4182   TATATATGGGCAAAA CAGAGTCAGGACTATCTCCA AAA TGGAGAT-G-CCTCACTCTG TTTTTGTTTCTCATT 100 41
   Dhaf_2542 NONE
   Dhaf_2543 2749039 .. 2749056 +  -9.1  -5.06016   GGATTACGCTACCGA             CCTGGCT GAAC GGCCAGG              TTTTCTTTATGTCAT 100 83
   Dhaf_2544 NONE
   Dhaf_2545 NONE
   Dhaf_2546 2751637 .. 2751671 + -14.4  -4.74801   GCCATGAAAAGTTAA     GCCATGATTGGGAGAA CTA TCCTTCCGATCATGGC     TTTTTACTACCGTTC 100 69
   Dhaf_2547 NONE
   Dhaf_2548 NONE
   Dhaf_2549 2753943 .. 2753965 + -10.7  -5.04868   GCACTTGTGCTTTAA           CCCATTTTC TTAGC GAAAATGGG           TTTTGTTTGCTTTAA 100 304
   Dhaf_2550 2755905 .. 2755926 +  -2.3  -2.88579   ATATGAATGAGTGGT           CC-TGGTAGT ATG AGTACCACGG           TATATAAAGGATTGG  41 18
   Dhaf_2551 NONE
   Dhaf_2552 NONE
   Dhaf_2553 NONE
   Dhaf_2554 2759233 .. 2759281 +  -9.2  -3.72695   CGGAAGATTTATGAA TAAAAAAACCGAGGCACATT AATATGTAC ATTGTGTCTTGGTTTTTTTA TTTCATAGCCCCCCT  78 27
   Dhaf_2555 2759676 .. 2759689 +  -2.3  -4.36914   AAAGATAAAGCCTGA               TGCAC CATG GAGCA                TTTTATCCCACCACC  61 281
   Dhaf_2557 NONE
   Dhaf_2558 NONE
   Dhaf_2559 2763308 .. 2763323 +  -4.6  -2.88663   TGTAATACTTTAAAT              CCCGTA TGAT TTCGGG               TGTCTAAAGATGCCT  49 46
   Dhaf_2560 2763619 .. 2763658 + -11.6  -4.05193   GATAGAAGGATAAAA  GAGACGTTTTGACTCCTCC AGG GGAC-AGCCAAAACGTCTC  TTCTTATGTTTCCTA 100 43
   Dhaf_2561 NONE
   Dhaf_2562 2765429 .. 2765441 +  -3.5  -2.61695   AGATATCAGAAAAAA                TAATA TTT TATTA                ATATTTAGCAATAAA  44 110
   Dhaf_2563 NONE
   Dhaf_2564 NONE
   Dhaf_2565 2769537 .. 2769574 + -21.7  -2.64091   GGATTGATTAAAATA   CAAAGGCTTAGAAATGA TTGT TCATTTCTAAGCCTTTG    TCATGTGGAATCCTT 100 47
   Dhaf_2567 2770649 .. 2770659 +  -3.2  -3.30159   CAGAAGAGGAGGCAC                 TGGG ATG CTCA                 TTGTCGGAGAATTGA  47 80
   Dhaf_2568 NONE
   Dhaf_2569 2772623 .. 2772652 + -18.1  -2.75064   TAATTGATGATACAA       TAGACAAAGGCAG ACTG CTGCCTTTGTCTA        TCATTACCTAAAGGG 100 38
   Dhaf_2570 2773380 .. 2773391 +  -2.2  -5.47218   ATATCATCTGATCGC                TTCC ACAC GGAG                 TTTTTTTGGCTAAGA  78 1
   Dhaf_2571 NONE
   Dhaf_2572 NONE
   Dhaf_2573 NONE
   Dhaf_2574 NONE
   Dhaf_2575 NONE
   Dhaf_2576 2778833 .. 2778856 + -11.8  -5.38549   GGGAGAAGTCTTCGA          CACTCTTCGT CTTT ACGAAGGGTG           TTTTTGTTATTTACA 100 79
   Dhaf_2578 2780641 .. 2780655 +  -4.2  -3.85389   TGAGGTATAGCCACT               GTCTTC CAC GATGAC               TTTCACTTGTTCAGG  57 393
   Dhaf_2580 NONE
   Dhaf_2581 NONE
   Dhaf_2582 NONE
   Dhaf_2583 NONE
   Dhaf_2584 2785654 .. 2785673 + -12.2   -3.9281   ATGGCCTATGTCAAA            GGACACCT ACCC AGGTGTCC             TTATTTCACGATCAT 100 50
   Dhaf_2585 NONE
   Dhaf_2586 2786461 .. 2786477 +    -3  -3.70417   ACGATTATTAAAAGT              CTTGAC CTAAA GTTAAG              TTTAGGTGCTATGAT  51 30
   Dhaf_2587 2787693 .. 2787705 +  -4.9  -3.14211   CGACAGGAGGGAAAC                TATGA AAG TCATA                TTAGTGAACGGAAGT  51 58
   Dhaf_2588 2788364 .. 2788395 + -16.8  -3.85698   GGCATGATATTGACA      GAAAGCATATGGTC ATTG GGCCATATGCTTTC       TTTATGAAAAAAGGA 100 63
   Dhaf_2589 NONE
   Dhaf_2590 2790225 .. 2790254 +  -6.6  -5.69262   GAGCACATTGGAAAA       CACCTTATTG AAGGCAATGG CAATAAGGTG        TTTTTATTTTTATAA 100 52
   Dhaf_2591 2790890 .. 2790900 +    -4  -3.39505   GAATTGTGGCAATAT                 CTTT GCT AAAG                 TTGTGGCTGTGACAT  51 63
   Dhaf_2592 2792351 .. 2792384 + -15.3  -4.17089   AGCCCAAATAATTAA     GCCAGGAGCTTGTCC TAGC GGAACAGCTCCTGGC      TTTTAGCAATTTAAA 100 81
   Dhaf_2594 NONE
   Dhaf_2595 2795472 .. 2795500 +  -3.8  -2.52623   ATAAATCTGCACTTG        GGCTCAAACCTG CAGTT TAGAATTGAGCC        GTATTATCAAAAAAG  44 59
   Dhaf_2596 2796848 .. 2796870 + -12.6  -3.14132   ATGGGTGAGGGTATG           GGGGCCGGGG GTA CCCTGGCCCA           TTCCTGAGGGGGCCA  84 362
   Dhaf_2598 2799852 .. 2799877 +  -7.6  -5.27779   AAAATATAGATAAAA         GCGTTTTGCA TTTTGT TGCAAGGCGC          TTTTTTACTATTGAC 100 32
   Dhaf_2599 2800436 .. 2800453 +  -2.1  -3.92001   TGAGTTTAATTTTTA             GTGTTACA CAC TGTAA-AC             TTATTGTATGATGTC  53 25
   Dhaf_2601 NONE
   Dhaf_2602 NONE
   Dhaf_2603 NONE
        cbiO 2805907 .. 2805926 + -12.2  -6.01725   CCAATGAAAGTAAGA            CGCTGCAA GAGA TTGCAGCG             TTTTTTCTTTTTGTT 100 157
   Dhaf_2611 NONE
   Dhaf_2612 NONE
   Dhaf_2613 NONE
   Dhaf_2614 2812900 .. 2812952 + -13.2  -5.09762   TATATAAGTTTAAAA TTTGCCTGTTTTGAAATTTATTCAT CTAG ATGAGTCAATT-CAAAACGGGCAAA TTTTTATCTTCACCT 100 127
   Dhaf_2615 2813320 .. 2813333 +  -2.4  -4.36914   AGTAATAGCTGAAAA               GTAG GGAGGG CTAC                TTTTGTCCCGCAAAA  58 105
   Dhaf_2616 NONE
   Dhaf_2617 2816185 .. 2816198 +  -3.9  -5.71712   AAAATCACAAAAAAA               TTAGT CCTG ACTAA                TTTTTTTGTGTCGAA  89 145
   Dhaf_2618 2817023 .. 2817050 +  -7.1  -5.12707   CGATAAGTTAAAAAA        GATAATCCTCT GTTGAA GGGGGATTATC         TTTTTTGCACTTTCA  90 70
   Dhaf_2619 2817858 .. 2817883 +  -6.3  -2.72043   ATTCTACAAAAGGAT         CAATAT-GGAGG CAT CCTTCGATATTG         CTTTAGCCAGCGCTT  54 98
   Dhaf_2620 NONE
   Dhaf_2621 2819263 .. 2819273 +  -6.8  -3.35046   ACTATCGATGTTAAC                 CCTC GCG GAGG                 TATTTAGGGGAATGC  61 72
   Dhaf_2622 2820337 .. 2820347 +    -4   -3.4252   TTATATCGGCATTTT                 TCTT CCG AAGA                 TTATGGTGCGTAGGA  52 112
   Dhaf_2623 2820517 .. 2820531 +  -5.7  -5.14477   TATCGATTGCAAAAA               CTCCT GTAAA AGGAG               TTTTTTGCCTATGTG  85 57
   Dhaf_2624 2820974 .. 2820996 +  -6.4  -3.79747   TTTGAGCAATCAAAG           TTCTTCATAA ATT TTATGGAGAG           TTTGATCCTGGCTCA  65 365
   Dhaf_2626 2828597 .. 2828617 +  -6.9  -3.45366   CCCTGCATAAGAACT            CTTTCACTT AAT AAGAGAAAG            TTGATTCATTGGCAA  63 332
   Dhaf_2627 2830051 .. 2830092 +  -8.8  -2.93073   CAAGACAACATTTTT TTAGGGGACCGGCAAGCGGA TTAC TCCGC-TGCCC-TCCCCTCA TCGTTATTCCAAAGC  68 47
   Dhaf_2628 NONE
   Dhaf_2629 2832694 .. 2832705 +  -4.4   -3.0814   TGAATATTGTAATAT                TGCA TTAT TGCA                 TATTAAGATATACAT  49 55
   Dhaf_2630 NONE
   Dhaf_2631 NONE
   Dhaf_2632 2835777 .. 2835796 +  -2.7  -2.80113   GGGGGCGCGGTGAAA            GGCTAGC ACTATG GCAGGCC             TCTGATCGCATAATA  42 20
   Dhaf_2633 NONE
   Dhaf_2634 NONE
   Dhaf_2635 NONE
   Dhaf_2636 NONE
   Dhaf_2637 2842044 .. 2842081 + -15.7  -4.54821   GTCTCTAATCACGAA   TTAAGGGGATTCTTGCC TGAA GGCTGGAATCCCCTTGA    TTTTGTGATTAAAAT 100 33
   Dhaf_2639 NONE
   Dhaf_2640 2845166 .. 2845176 +  -5.4  -2.64412   CTGAAATAATTGTCA                 GCAA TGC TTGC                 CTATTTAAAATTAAA  49 32
   Dhaf_2641 2845926 .. 2845963 + -20.3  -4.87291   TAACGGATGAGAGAA   CCCTGAATATAGTAAAT TTTA ATTTACTATATTCAGGG    TTTTTACTTGAAATA 100 110
   Dhaf_2642 NONE
   Dhaf_2643 NONE
   Dhaf_2644 2847889 .. 2847933 + -15.9  -3.41051   GTAAATATAAAAACA TACAGACAAGGGGCAACAT CAGAAAA ATGTTGCCCCCTGTCCGTA TTGTCATGCCGCTGC 100 88
   Dhaf_2645 2848775 .. 2848786 +  -2.2  -3.60762   GTGCGGGTCATATTA                TGGC TGAG GTCA                 ATTTTTTCGACGATA  47 206
        fabG 2850693 .. 2850738 + -15.8  -4.66537   GCAAAGCAATGATAT GCCAAAA-TGACAGTG-GCGGA GTTT TCCGCGTACTGTCATTTTTGGC TTTATTTAATTTATT 100 87
   Dhaf_2648 NONE
   Dhaf_2649 2853747 .. 2853774 + -12.8  -4.24342   ATACTATTGCTTAGG        TCAGGGATATCC AATC GGATATCCCTGC         TTTATTCATGCAGGC 100 113
   Dhaf_2650 NONE
   Dhaf_2651 2855909 .. 2855932 + -13.2  -5.40072   ACCGGAAACAATGAA          CCGCTTCTTC GCTT GAAGGAGCGG           TTTTTTTACCAGGGA 100 56
   Dhaf_2652 NONE
   Dhaf_2653 2857827 .. 2857877 +  -5.3  -3.68073   AAATACAGGGAACCG CCCCTGTGCCTTCCGGAAAGGGCG ATAC TGCCCTCAG-GGAATGTACGGGGG TTGTTCCCTGCACTG  59 87
   Dhaf_2655 2860335 .. 2860370 +   -10  -5.24129   ATAAAGAGTACAATT    TGTCCATAAATTGAAT CTTA GTTCAGTTTATGGATA     TTTTTTCTAAAAACG 100 75
   Dhaf_2656 NONE
   Dhaf_2657 NONE
   Dhaf_2658 NONE
   Dhaf_2659 2863640 .. 2863659 + -10.8  -4.73448   GCCTCTTACCAAAAA            CAAAGCGT GCAG ACGCTTTG             TTTTTGACTGTCTAT 100 47
   Dhaf_2660 2864428 .. 2864442 +  -2.1  -3.30781   TAGAGCGAAAGGTCG               TGATC TGGAT GGTCA               TTGGGTTTGGCTTCG  45 55
   Dhaf_2661 2864740 .. 2864769 + -17.9  -4.35116   GGAAAAAGAGCAAAA       GGCGGCGACTGGC TGAT GCCAGTCGTCGTC        TTTTGCTGTAAACTA 100 66
   Dhaf_2662 NONE
   Dhaf_2663 NONE
   Dhaf_2664 2867288 .. 2867309 +  -2.9  -2.64803   GGAAGCCGTAAAGGA           GGATGCGGT ATGA ACCGCATGA            TGGCTTTGGAACTGA  41 13
   Dhaf_2665 2868587 .. 2868622 +  -7.6  -4.30995   GCGGCATAAAGAAAA    GCGCCTTTCTC-CACTG TTA TGGTGCGAAAAGGGCGC    TTCTTTTATAACAAG  79 62
   Dhaf_2667 NONE
   Dhaf_2668 NONE
   Dhaf_2669 2872218 .. 2872254 +    -6  -5.39721   GTAACTATAAGGCTG   GCTGTCCTT-TATGG AGTATGAA CCATGGAAGGGCAGC    TTTTTTCTATAATCC  86 37
   Dhaf_2670 2873210 .. 2873245 +  -8.3  -5.95539   CCATCCGGCAAAAAT    CGTTCTTTCACTCAC CTGAAC GTGGGGGGAAGGACG     TTTTTTTCTTTAAGG 100 81
   Dhaf_2671 NONE
   Dhaf_2672 2874452 .. 2874484 + -16.4  -3.94634   GGCCAGTGAGGGAAA      CTGCCCTTCCGG GCAATTAAG CCGGAAGGGCAG      TTCTTTACGCTAATC 100 32
   Dhaf_2675 2878086 .. 2878113 +  -6.3  -5.80817   TCTGAATAGGAAAAA        TAGCCCGCCAGT CTAGT AC-CGCGGGCTA        TTTTTTTATGTTGAG 100 53
   Dhaf_2676 2880150 .. 2880168 +  -4.6  -2.95091   TCTTAATGGAAAACA             TTGTCTTT ACT GAAGACGA             TATGTAAATTCAACT  50 0
   Dhaf_2677 2882652 .. 2882709 + -16.6  -4.69214   ATGATTGAGATAGAA TAGGCATAAATCAGCAAGAATCCTTT ATCTAC AAGGGTTTCACGCTGATTTATGCCTA TTTCTTTATTGCCTG 100 37
   Dhaf_2678 2883392 .. 2883411 + -13.6  -3.84406   TACTATAAATAAACG            GGGCTGTC GCAA GACAGCCC             TTATTCTGCTCACAA 100 45
   Dhaf_2679 2884587 .. 2884598 +    -3  -3.29511   GGCTCGATGTTGAAC                TAAG TGAG CTTA                 TTGTAAAAGGATAGG  47 0
   Dhaf_2680 NONE
   Dhaf_2681 NONE
   Dhaf_2682 2887384 .. 2887416 +  -6.9  -5.09762   AAACCAGGGGTTTAG      ACGGGTTCGCGGTGT ATT GCATTGCAAACCCGC      TTTTTATATTGCCCT  88 91
   Dhaf_2683 2888345 .. 2888363 +  -9.5  -5.26247   ACCGATACAGTAAAG             GGGCTGC TTAGT GCGGCCC             TTTTCTTTGTTTTAA 100 82
   Dhaf_2684 2889826 .. 2889861 +    -4  -4.84274   GCTCAGAGGATATAC    GCCATGATTTGAAG ATAGATTC CACCAAGTCATGGC     TTTTTGCTGTCATTC  71 53
   Dhaf_2685 2891400 .. 2891436 + -15.4   -4.0056   CATCAATCTTCGAAG   GGAAAAGCTGAGGGTTC TGCG GAACCC-CAGCTTTTTC    TTTATGGGTATTTAT 100 59
   Dhaf_2686 2892310 .. 2892322 +  -3.4  -3.08776   TACCTGAGTTAATGG                CTTC TAATC GAAG                TGCTTTTACCGGATT  46 41
   Dhaf_2687 NONE
   Dhaf_2688 2894821 .. 2894839 +  -7.4  -5.34555   AATTGCTAATCAAAA             GCGTCC GCTTCCG GGACGC             TTTTTTATACTATAC  91 88
   Dhaf_2689 NONE
   Dhaf_2690 2896546 .. 2896561 +  -6.2  -4.10188   ACCGACCGTTCTGCT              CCTTAA AAAT TTAAGG               TTGTTTATAGATATA  69 20
   Dhaf_2691 NONE
   Dhaf_2692 2898721 .. 2898777 +    -3  -5.46698   GGCTAATCATTGCTA AAACCGTCCCGAAAGCGGACGCATTGT GCAC ACAAA-TGCCTGCTTTCGGGACAATTG TTTTTTACTTTTCCA  82 35
   Dhaf_2693 NONE
   Dhaf_2694 NONE
   Dhaf_2695 NONE
   Dhaf_2696 NONE
   Dhaf_2697 2904386 .. 2904440 + -24.7  -3.35046   GGGATTATTATGAAG TAAAGACAAAAGACGGACTATCGGC GTAAA GCTGATAGCCCGTCTTTTGTCTTTG TCTTTAAAGAGGTAG 100 23
   Dhaf_2698 2904917 .. 2904942 +  -9.1  -6.20267   AAAAGTGATAAAAGC         CTGAGAGATGC ATAA GTATCTTTCAG          TTTTTTTATTTTTAG 100 91
   Dhaf_2700 2906709 .. 2906736 +   -20  -4.89519   TGTAACTATAATACA        TAGCCGGCCAGA GATC TCTGGCCGGCTA         TTTCTTTTATATTAT 100 36
   Dhaf_2701 NONE
   Dhaf_2702 NONE
   Dhaf_2703 NONE
   Dhaf_2704 NONE
   Dhaf_2705 NONE
   Dhaf_2706 NONE
   Dhaf_2707 NONE
   Dhaf_2708 2910222 .. 2910244 + -13.5  -4.42974   TTATTTAATTCCGGT           GGGGGAAAG GCTTG CTTTCCCCC           TTTATTATATCTAGG 100 33
   Dhaf_2709 2911145 .. 2911187 + -12.3  -2.97613   GATGCTTAAATACTG TCATAATGCTAGCTTGT AAGTTGACA ACATGCTAGCATTATGA TATACTTAATTCATG  93 32
   Dhaf_2710 2911495 .. 2911509 +  -5.8  -2.92449   GTGATTAATTGCTGG               CATTAT GCT ATAATG               TGTGTAAAATGTTTC  54 33
   Dhaf_2711 NONE
   Dhaf_2712 2911908 .. 2911918 +  -3.2   -2.5844   GATAATTGAATTGTA                 TCCT TGT GGGA                 ATTAGTGTAATATAA  42 10
   Dhaf_2713 2912178 .. 2912200 + -11.3  -5.95946   TAATGCAATACATAT           TCGGCCTGG TAATC CCAGGTCGA           TTTTTTTATTGTTCG 100 38
   Dhaf_2714 2913860 .. 2913892 +  -4.2  -3.25475   ATTATAAAACGCATC     CGGACTG-CTTAAAA TATT TTTTAAGGCCGACCG      TGTTCGTATCTTAGC  48 495
   Dhaf_2719 2917074 .. 2917112 + -13.3  -5.55769   ACAGGGACAGCAAAA  GCAGACCTCCATTCCACA CTGA TGTGG-GTGGATGTCTGC   TTTTTTATTATGAAA 100 51
   Dhaf_2720 2918317 .. 2918329 +  -4.7   -4.2558   TTCGACGGCTTTGAA                GGCGG CAA CAGCC                TTTTCCTGCAAACTC  64 308
   Dhaf_2728 2926587 .. 2926604 +  -9.9  -3.79251   TGACACACGAAAAAA             GCCTGAT GGGA ATCAGGC              TTTACTGATGCGATG  84 271
   Dhaf_2739 2939925 .. 2939947 + -17.8  -3.98747   TTAAGCATGTGATAA           GGGAACCGGA AAA TCCGGTTCCC           TTTAGTAATTTTTTA 100 37
   Dhaf_2753 NONE
   Dhaf_2754 2954563 .. 2954611 + -19.8  -4.09108   TTTCCAGATCAACGA TGCTCCCTCCAGGTCAGCTGTTT GACA AAGCAGC-GGCCTTGAGGGAGCA TTTGTATAGATTGCC 100 68
   Dhaf_2759 NONE
   Dhaf_2760 2962053 .. 2962102 + -26.1  -3.28712   TCTTTTATCAACGGT CCATTGCTCAGCCAAATTGCCAA CAGG TTGGTAATTTGGCTGAGCAAAGG TTGTAAAAAAGGGAG 100 56
   Dhaf_2762 2964452 .. 2964475 +  -5.9  -4.60797   CGCCGAGATGAAGAG          TCCATCCCG ATTCCC CGGGGAGGA           TTTTATCTGTGGGGC  75 206
   Dhaf_2777 2982586 .. 2982609 + -12.5  -4.36127   CCCATGATTGCCAAA          GGCGGAAGA TGTTAT TCTTCCGCC           TTTTAGCTTATTGCA 100 34
   Dhaf_2781 2986812 .. 2986849 +  -9.3  -4.70879   ATATGTCAGTCGCCA   GATCTAGAAAAAGAGCC GTCA GGCTCTTTTTTTAACTC    TTTTTACCCTTTGGA 100 19
   Dhaf_2787 2992004 .. 2992027 +    -6  -3.53298   CAGGGTTTTGACGGC          GGATAGGGGA TAAC TTCCCTGTTC           TTAATTTCCAATACT  59 337
   Dhaf_2805 NONE
   Dhaf_2806 3015110 .. 3015132 +  -7.7  -5.08601   GTTCATAGGGCAAAT           CAGGCTGAC ATAGC GTCAGCCTA           TTTTTGTTGCGATAC  95 82
   Dhaf_2807 3015987 .. 3016008 + -11.6  -5.38321   GCTATGGTTTTTAGG           CCCCAGAG AATGAA CTCTGGGG            TTTTTTATAGTGTTT 100 235
   Dhaf_2808 NONE
   Dhaf_2809 3017855 .. 3017866 +  -7.2  -4.09108   TCCATGAGTTTCTTA                GCCG AAAA CGGC                 TTTATCTAGATTAGA  73 5
   Dhaf_2810 3019123 .. 3019139 +  -5.2  -2.89447   TTAGTATTTAGAAAA              TGCTTA CACTT TAAGCA              TACTTGTGATTCACG  50 37
        ribH 3019742 .. 3019758 +  -3.7  -3.44848   TTTATTTTCTTAGAC              TAAAGAC TGA GTCTATA              TCTTTGATAAGGAGA  51 125
   Dhaf_2812 3020419 .. 3020460 + -18.9  -3.96681   AATCCAGATCATTAA GAAATCCCCGGAAATGAAC CAAC GAACATTTCCGGGGATTTC  TTCTTGCTTTATTGC 100 43
   Dhaf_2823 3031093 .. 3031116 + -11.8  -4.19238   GGCGCACCAAGAAAA          GGCCTTCGAA AAAC TTCGAAGGTC           TTTTCGAATTGAACA 100 89
   Dhaf_2825 3033808 .. 3033831 +  -5.2  -5.09762   TCATATAACCTTTTT          CAGATGCTTG CGGG CGGGCACCTG           TTTTTGTGTTGCCCT  81 254
   Dhaf_2828 NONE
   Dhaf_2829 NONE
   Dhaf_2830 3040931 .. 3040964 + -16.1  -5.45652   GCTAACACACCTCTT     TCCCGATGATGCGTG GGGA CACGCGTTGTCGGGA      TTTTTTATTGGGGCT 100 63
   Dhaf_2831 3042987 .. 3043003 +  -7.9  -2.62616   TGGAAGCGCCGTATA              CCGAACG GTA CGTACGG              TGCTGTGGGAGGTCG  60 52
   Dhaf_2834 NONE
   Dhaf_2835 3052639 .. 3052664 +  -9.7  -3.70902   CGATAATAAACGACT         GCGGATCTTCC TCCC GGACGATTCGC          TTTAAATGTCCCAGC  76 109
   Dhaf_2843 3059571 .. 3059601 + -13.5  -4.85782   TGATTCGGTTTCGAA      TGCCCTCTTG-ATG CAAA CATTCAAGAGGGCA       TTTCTTTTTGGCAAA 100 38
   Dhaf_2844 3060127 .. 3060138 +  -2.2  -3.12351   GCCAAGAATCAAAAC                TCCT TTAT GGGA                 TTGCATATAACCGCA  43 137
   Dhaf_2847 3061924 .. 3061949 + -11.9  -4.98531   AATGCAAAGTAAAAA         GCAACTCCGTC TAAA GACAGAGTTGC          TTTTTACTTTGCAAA 100 130
   Dhaf_2851 3066413 .. 3066423 +  -3.2  -3.17456   TGCCTTCGAGAAAAA                 GGAG TAG CTTC                 TTGACTGATTTGCTT  46 19
   Dhaf_2852 3066746 .. 3066784 + -20.4  -4.29829   CATGAATTAGCCAAA   GGCGTCCTCCCTTCACTA TAA TAGTGGGGGCAGGACGCC   TTTATTAGTGATTAT 100 57
   Dhaf_2871 3086283 .. 3086319 +   -16  -2.68279   AAGTGAAGAAGAAAC    GCATCCCCTGCAAGAT TAAAT ACCTTGTAGGGGATGC    TCAATTTAATCCATA 100 7
   Dhaf_2875 3087956 .. 3087995 +  -8.5  -2.58999   TAACTAAGTAATACA  GCCCGCCTGTAGCC-TTC CTTTT GATCGGCCACAGGCAGGC  ATTGCTCTATGAAGC  63 34
   Dhaf_2879 3092065 .. 3092075 +  -6.8  -3.14344   ACATATTGATAGATC                 GCCT TCC AGGC                 TTCGTCACAGAAATC  59 191
   Dhaf_2902 NONE
   Dhaf_2903 3112413 .. 3112449 +  -7.3  -3.79874   AGCCAAAACAAACAA   CGGCAGACGCCTGTCC CTTAGA GGAT-GGTATCTGCCG    TTCTCTTATGTCAAA  70 57
   Dhaf_2908 3119072 .. 3119086 +  -2.1  -4.82901   TTCTGGCGTAATTTT               TAGGA AGGGA TCCTG               TTTTTATGGAGCAAA  66 127
   Dhaf_2909 3120576 .. 3120600 + -13.7  -3.89822   TCCTGCCTCATAGCC          GGTTGGAAACG TCC TGTTTCCAACC          TTTCTCCGCTGCATG 100 160
   Dhaf_2917 3128853 .. 3128867 +  -6.4  -4.87318   CTGATGGTTAACAAA               GACTCG CCG TGAGTC               TTTTTCGATTTTCAG  83 271
   Dhaf_2925 3138394 .. 3138424 +  -9.2  -3.96148   AAGCCAAGCATAAAA      GGGCTCTTTGAAA TTTAAC TTTCAA-GAGCCC       TTTCTCGTCAACAGG  83 68
   Dhaf_2965 3187268 .. 3187286 +  -5.2  -3.05816   TCATTTCAGAACCGC             TCTTGCCG TTT CGGTACGA             TTCGCTCCGGCATAG  52 170
   Dhaf_2968 3189177 .. 3189220 +  -2.3  -4.98255   CTCACCATACTATAT GCCTCTGACCGGGGATGTGT GACAA ACAC-TCCCGGGAAAGGCGC TTTTTATAGTTCAAC  68 311
   Dhaf_2974 NONE
   Dhaf_2975 3198349 .. 3198361 +  -7.7  -2.78679   TTTGGCGTACGAAAG                TGTCC GGT GGACA                GTTTCGCTCAAGGCG  61 114
   Dhaf_2977 3199122 .. 3199147 + -14.9  -4.51765   AGCTACCATGGAAAA         TAGGAGTACAG TGCG CTGTACTCCTA          TTTATTTGGATTCTC 100 50
   Dhaf_2984 3207017 .. 3207048 + -17.6  -4.21768   TGTCAGGTGCACAAA      TTAAGAAGGAAAGC CCCG GCTTTCCTTCTTAA       TTTTAGAATTACTTA 100 69
   Dhaf_2987 3211253 .. 3211287 +   -10  -5.00616   GAAAATTCACAGATA     TATACGGCTTCCTCAA AAA TTGAGGAAGCCGCACC     TTTTTTCCAGAAGAA 100 61
   Dhaf_2988 3212004 .. 3212041 +   -15  -4.87273   GAAATGAAGCAGAAA   TACGACCCTC-CCCCTA AAACA TCGGGGCGAGGGTCGTA   TTTTTATAAGCTCTT 100 47
   Dhaf_2991 3214109 .. 3214135 +    -8   -3.5241   GCAGGCGGAATCATC         GGAGTTGTAGCC CGG GGATAGAACTCC         TCTTTGTGAACAGTC  68 5
   Dhaf_2992 3214734 .. 3214784 +   -17  -4.43309   GAAAATAGCTTAAGG AAAGAGGCTGTTGCTTAACGAACG TAC CGTTCATTTTGCAACAGCCTCTTC TTTTCCTTGCGCTTA 100 57
   Dhaf_2998 NONE
   Dhaf_2999 NONE
   Dhaf_3000 NONE
   Dhaf_3001 NONE
   Dhaf_3003 3224415 .. 3224427 +  -7.7  -2.78679   GTTTGGCGGCGAAAG                TGTCC AGT GGACA                GTTTCGCTCAAGGCG  61 80
   Dhaf_3011 3232473 .. 3232486 +  -8.1  -5.38958   ATTAAACTATTAAAA               GCACC GGCT GGTGC                TTTTTCTTTATCACT 100 54
   Dhaf_3012 3233609 .. 3233623 +  -4.2  -2.76583   AAGCTTCCCCGTTTT               CTTTGG CCT CCAACG               CTTTCAGGGTATTCT  45 257
   Dhaf_3023 3244416 .. 3244454 + -17.5  -4.37067   TACTACTCTATACTA   TCACAGGGGGGCGTATC ACTTC GATACGCCCCCCTGGTA   TTTTGCTCATATTTA 100 41
   Dhaf_3030 3251258 .. 3251286 + -12.6  -3.90766   CGGCCCACTGAAAAA       CAAGAAGCTCGCT TGAC AGCG-GCTTCTTG        TTGTCTTTATAGATC 100 30
   Dhaf_3033 3253033 .. 3253087 + -16.1  -3.15346   CTAATTTTCAACTCA TGAATATAAGGGCATACAATCAG AATTACGAA CTGATTGTATGCCCTTATACGCA TCTTCCTCAACTCTT 100 87
   Dhaf_3039 3258354 .. 3258366 +  -4.7  -3.54146   TTGTTCTTTGCCGCC                GGCGC AAA GCTCC                TCTTTAGTTAAGCCA  55 2
        uvrC NONE
   Dhaf_3042 3261150 .. 3261193 + -13.4  -3.19175   TGGGAGAGCTAAAAA GGAGTATCAC-TCACTGCTTT AAA AAAGCAATGAGGCGATACTCC TTCAGTATATTCCCC 100 129
   Dhaf_3051 3272227 .. 3272237 +  -6.8  -3.09492   CCCTCAGTTCCCCTG                 CCAG CCC CTGG                 TATTCGCATTCCACG  55 243
   Dhaf_3054 3275765 .. 3275777 +  -5.5  -4.38154   GCGGGATCTACTAAA                GCGGT TCA ATCGC                TTTTATCCCCGATCT  68 27
   Dhaf_3057 3277822 .. 3277836 +  -4.2  -3.34398   AGGAATAGGCGGACC               GGTTCC AAG GGAAAC               TGTTTACCCACAAGA  50 279
   Dhaf_3059 3279555 .. 3279573 + -12.4    -4.614   AACCTAAACATTAAA             GCCGCTCA CAA TGGGCGGC             TTTTGTATCATTAAC 100 44
   Dhaf_3069 3288165 .. 3288175 +  -2.4  -3.90112   ATTTGAATTAAAAGT                 GAGG TAT CCGC                 TTTGCTTGACCCGCG  51 297
   Dhaf_3071 3288936 .. 3288961 +  -7.5  -3.88001   GGATAATTCGGGATT         GCGCCGCCA AAAGATCA TGGCGGCTC          TTACTTTTTCTACAC  69 110
   Dhaf_3073 NONE
   Dhaf_3074 3292516 .. 3292526 +  -2.4  -3.85325   CTCCTGATCAAAACT                 CAGC GAA GCGG                 CTTTTTTCTATGTCT  51 69
   Dhaf_3075 3293388 .. 3293423 + -10.4  -5.08824   TAAGTAATTATGGGG    GAAGCTGCCTGAGAAG AAAT CATCCGAGGCAGCTTC     TTTTTTGCATCACAC 100 34
   Dhaf_3076 NONE
   Dhaf_3077 3295428 .. 3295444 +  -3.5  -3.44794   GAGGTCATTCCCACA              GCGGCGG CGG CCGAAGC              TTCTAATACTGAATT  51 3
   Dhaf_3078 3296469 .. 3296494 +  -9.8  -3.91488   AATTTTTGCTCCAAC         TGCGGTCAGA AGCTGG TCTGACCGTA          TTATTTGGGGGGATT  86 5
   Dhaf_3079 3297949 .. 3297966 +  -9.9  -5.24129   TAAAATTGCAAAAAA             CCTGTCA AATG TGACAGG              TTTTTTATACGGGAA 100 257
   Dhaf_3090 NONE
   Dhaf_3091 3309368 .. 3309378 +    -4  -3.71448   AATCTTTCCATACTT                 TATG GGG CATA                 TCTTCTTTATTGATC  55 100
   Dhaf_3096 3313810 .. 3313839 +    -8  -4.24075   TCAAGAATAGCAAAA       GAGAAGGCTT CTTAAATTTT AAGCCTTCTC        TTTGTATTCCTCAAT  76 79
   Dhaf_3125 3340156 .. 3340191 +  -8.2  -3.07443   CAGGTGGATAAGCTT    CCCGGAGTGGGAATAA AGTC TTGAACCTGCTCCGGG     TTGACTCCCATATCC  63 386
   Dhaf_3134 3350460 .. 3350498 + -11.8    -3.922   GTCTAAACACCCAGA   AACGCCCTAATCTCAC CATAAAA GTGAGACTAGGGCGTC   TTTCATTAAGGGTTT 100 35
   Dhaf_3148 3367683 .. 3367714 +  -3.7  -2.79796   AGCTAAAAACCTCCA      CTATAACACCAGA CTTTTA TCTGGTGGTACGG       TGTAATAGAATGGGG  45 49
   Dhaf_3149 3368502 .. 3368527 + -10.6  -4.40561   AGAAACCCTCCACTT         TAACACCAGA CTTTGT TCTGGTGTTA          TTCTTTTTAGGCAAA 100 23
   Dhaf_3150 NONE
   Dhaf_3151 3370060 .. 3370075 +  -4.8  -3.56325   AATGCGATTGGGGAG              TAAAGT CAAC ACTTTA               TTATGATTATCCAGC  55 60
   Dhaf_3166 3385807 .. 3385843 + -16.8  -3.37344   ACAATTTGAACCAAT    GCAAAAGAGACCATCT TCTAT AGACGGTCTCTTTTGC    TTACTTACCTGGCAA 100 403
   Dhaf_3169 3394784 .. 3394794 +  -3.2  -3.13899   AATGATTAGGATCTT                 TAGC TTT GCTG                 TATTGGTGAAGGGTT  46 36
   Dhaf_3171 3398405 .. 3398423 +  -3.2  -4.27316   TAATCACAGACCTCT             GGATAA GAATTCA TTATCC             TTTTAACTTCCGGAG  61 91
   Dhaf_3173 3400731 .. 3400746 +    -6  -3.54424   ACTGTTCTGCTGCCA              CCCGGC GAGG GCGGGG               TTTCAGGGGCTGGCC  59 147
   Dhaf_3177 3404072 .. 3404083 +    -3  -3.03441   AATCCCTCAAAGTCG                GTTA ATCG TAAC                 TATTCCAAGCTGCTA  44 21
   Dhaf_3178 3405760 .. 3405770 +    -4    -3.727   CCTCTTTAATATTAA                 TACT ATT AGTA                 TTTGGATCTGCTACA  55 469
   Dhaf_3201 3428460 .. 3428514 + -19.7  -3.93695   AAATATGCTGTACAT GAAGAAAGAGCACCGCCGGACTACTTT TGT AGAGTAG-CCGGCGCTGCTCTTT-TTC TTTATGCCTGCTGGG 100 51
   Dhaf_3224 3451828 .. 3451857 + -15.1  -5.06451   TCTTACAATATAAAA       CCGCGTGAAATCA TCGT TGATCTCACGCGG        TTTTTTCAACTCATG 100 49
   Dhaf_3227 3454807 .. 3454840 +   -16  -4.05446   AAGCAAGTAAGAGAA     CCCCGCCCAGTCGT CAGAAT ATGACCGGGCGGGG      TTTCTGCTTGCGAAA 100 31
   Dhaf_3229 3459948 .. 3459978 + -14.1  -2.91814   AGTCCTAAAGATGAC       GAAGCGCAGCAAT CTGCC ACTGCTGCGCTTC       CTTGTGTCTTTTATT 100 54
   Dhaf_3231 3463408 .. 3463457 + -19.5  -2.81471   AGGAGTAGGTCAAAA CAAAAAGCCGCTGCCCGAGGAACA TAT TGTTC-TCCGGCGGCGGCTTTCTG TCTGGTAAGCTTCTA 100 33
   Dhaf_3238 NONE
   Dhaf_3239 NONE
   Dhaf_3240 3474048 .. 3474089 +  -8.7  -4.45151   ATGCAAACACCCAAA GGGAGTGTCGCGAAGCTGCT TGA AGCAGCGGT-TGACGCTCCC TTTTCCTTAGCTATT  93 70
   Dhaf_3242 3476176 .. 3476206 + -11.2  -5.83211   TAATTCATAAAGAAA       GATAGGGCACCT GGCTGAA AGGCGCCCTATC       TTTTTTGTTTTACTC 100 104
   Dhaf_3249 3483174 .. 3483186 +  -7.7  -2.81872   TTTCTGACTCTTTAG                CCCTT GGC AAGGG                TGGTCTTATCATCCG  61 34
   Dhaf_3251 3486300 .. 3486313 +  -2.4  -3.06261   AGTGGTTTAAGGAGG               GGTT AGGATG AACC                TGTTCGAGATTCAGA  42 20
   Dhaf_3252 3487164 .. 3487192 +  -7.5   -3.9373   TTATCTTATACTGAG        GACAACCTGTC AGATTGC GATGGGTTGTC        TTTCACTTTTGCGTC  72 103
   Dhaf_3253 3488096 .. 3488144 +  -5.8  -3.90112   GTAAGTTCATAAAAA GGGAGCATCGCCGGGCTACTGC AAAAC GTAGCTTTCAGGCAATGCTCCC TTTGCTTAAAAAGAG  63 117
   Dhaf_3255 3490469 .. 3490485 +  -3.7  -3.07222   CGGGTTTGCTCCCAG              GATGATG AGT CATAATC              TATTAACATGATGCT  48 11
   Dhaf_3256 3490916 .. 3490940 +   -13  -4.12133   GTGCTAATGATGCAA          TAAAGAGCGG TTATC CCGCTCTTTA          TTCTTTAGTATTTAG 100 100
   Dhaf_3258 NONE
   Dhaf_3259 NONE
   Dhaf_3260 NONE
   Dhaf_3261 3494444 .. 3494477 + -16.9  -4.49556   AATATACAAAAACAG     GGCGGGAACTCAA CTTAACCC TTGAGTTCCCGCC      TTTCTTTAATAACAC 100 61
   Dhaf_3267 3497861 .. 3497875 +  -2.8  -3.14708   AAGAGGTGCAGAAAT               CGTGAT GGC ATCACA               TATCCTTTTGGTTGG  44 21
   Dhaf_3268 3498239 .. 3498275 + -19.5  -3.76641   TTCGTCAACAAAAAA    GTCGTCCTCCCCCCACT ATC AGTGGAGAGAGGACGAC    TTTGGCTATTGGCCT 100 43
   Dhaf_3274 NONE
   Dhaf_3275 3505187 .. 3505230 + -19.2  -5.09426   AACAGGGAGAAAAAC AGGGACAGGTACCATTATTCA TAC TGAATA-TGGTACCTGTCCCC TTTTTTCACGTTAGC 100 56
   Dhaf_3285 NONE
   Dhaf_3286 NONE
   Dhaf_3287 3518301 .. 3518312 +    -3  -3.61715   ATCATATCTTGCACA                TAGT CAAA ACTA                 TTGTTCACCCCCATG  51 361
   Dhaf_3292 3523886 .. 3523927 +   -11  -3.96154   CCGCTTAACATCAGG GGAGCATCGCATACTGCTT TATCT AAGCAGGG-GTGATGCTCC TTATATTATTTCTTC  90 33
   Dhaf_3293 NONE
   Dhaf_3294 3527205 .. 3527258 +   -14  -3.76393   ATTCCTGTTAAAACA TTGACCATGTTGGTCGGTTTATGC TACAAT GCAATTACCGACCAGTATGGTCAA TTTCGATTAGGATGT 100 80
   Dhaf_3295 NONE
   Dhaf_3296 NONE
   Dhaf_3297 3530286 .. 3530328 +   -17  -4.23794   CAATCGTTGATTATG CCCGCTCAACTGCCGGTTAC TAT GGGACCGGCAGTTGAGCGCC TTTATGTTAGGTTCA 100 63
   Dhaf_3298 3532670 .. 3532715 + -30.7  -3.66874   TAATGACATTCTAAA GGGCGTGTCGCCCTACGTTTA TGTG TAAACGCAGGGCGACACGCCC TTTCAATAAGATTAG 100 78
   Dhaf_3312 3549200 .. 3549218 +  -9.6  -5.26316   TATGTGGTGGTTATT             GAGGAGTT GAA AGCTCCTC             TTTTTTGTGCCATCG 100 93
   Dhaf_3313 3551280 .. 3551301 + -14.5  -3.91911   GTGCACATTGATAAA           GGTGCGGAA AATT TTCCGCACC            TTTGGTTGGCCTGAC 100 64
   Dhaf_3315 3554627 .. 3554646 +  -3.4  -3.90291   ATATTAAAGAGAGTT            TGCCTGGC AAGC GCCGAGCG             TTTCGTTCCCCCCAT  53 204
   Dhaf_3322 3560408 .. 3560423 +  -2.4  -2.55351   TAAGTCTAATAAAAA              CCCATC ATAA GGAGGG               ATTACTATGGCAGAG  39 38
   Dhaf_3323 3560738 .. 3560754 + -10.8  -3.21593   ACCATTTACTCCTTA              GCGGCC ATTCA GGCCGC              TCTTCTGACCGGGTC  79 91
   Dhaf_3324 3561696 .. 3561713 + -10.5  -3.93953   TAGCGGCCATCTCAA             CCGGGGC TGCC GTCCCGG              TCTTTCTTATTTTCA  89 58
   Dhaf_3326 3562783 .. 3562798 +  -4.7  -3.99405   AAATCTTACCTATCT              GCAAG CAATAC CTTGC               TTTCTCATAAGTTAA  61 54
   Dhaf_3331 3566446 .. 3566460 +  -5.6  -2.93071   GTGGACGGTCCTGTT               TGACCC TGT GGGACA               TCCGTTTTGTTTTGT  54 139
   Dhaf_3334 NONE
   Dhaf_3335 3571718 .. 3571759 +  -4.5  -4.59293   TAATCCACGCAAAAA GAAGCAAAGCCGGGC ATACTATACCCA ATCCGGTTTTGCTTC  TTTATTTCATCTTTA  71 38
   Dhaf_3337 3573738 .. 3573758 + -10.5  -2.84574   AATCACTTCCGGGTC            GGTAAGAGG CTT TCTCTTACC            TAATTGATTAAGCTC  71 171
   Dhaf_3340 3575641 .. 3575653 +  -6.2  -4.56597   CCTTCAAGGACTAAA                GCCG CGGCC CGGC                TTTTTCAAAAAAAGA  74 27
   Dhaf_3342 3577855 .. 3577878 + -12.5  -5.41143   AGCCGTCTCCACAAA          GAGCAGCAG CCGCTC CTGCTGCTC           TTTTTTTGAAGAATA 100 248
   Dhaf_3344 3580064 .. 3580074 +  -3.2  -3.75332   TCTTCCTCTTCGCCA                 TTGG TTG CCGA                 TTTAAATTCAGAGAT  53 409
   Dhaf_3367 NONE
   Dhaf_3368 NONE
   Dhaf_3369 3605120 .. 3605134 +  -7.8  -4.25848   ACATCCATAAATGGC               GGCTGT GGG GCAGCC               TTTTCCTGCCGGGTT  79 40
   Dhaf_3371 3606665 .. 3606707 + -15.8  -2.94411   CATGCAGCCTAGTAT ACATAAAGGAAGCGTGTC CTGCCCT GGCACGCTTCCTTTATGC CTTATTTGCCAACCT 100 29
   Dhaf_3389 3623662 .. 3623681 +  -2.8   -4.2461   TTCGGTGTCATCGGA            GGAAGTTT AGCC AGTCTTCC             TTTATTGGTAGCAAT  59 174
   Dhaf_3400 3636946 .. 3636957 +  -2.2  -4.62783   CATCACCATCATAAT                TAGC TCCG GCTG                 TTTTTACACTCACTG  63 23
   Dhaf_3401 NONE
   Dhaf_3402 3637727 .. 3637741 +  -3.6  -4.18018   CATGGCAGGCTCTTG               TATGAT TAT ATCATG               TTTTAAATACAACAA  60 5
   Dhaf_3407 3644229 .. 3644242 +  -8.1  -3.17194   TCAACAGAAAAGGAA               GGGGA TGGC TCCCC                TTCCCTTCAGGCAAT  63 251
   Dhaf_3410 3647557 .. 3647598 +   -11  -3.69449   ATAGGTTGGCAGAGA GCCCCGGCCC-T-TTGGAGA AACT TCTCTGATACGGGCTGGGGC TGTTTTGCCATCTTC  81 250
   Dhaf_3431 NONE
   Dhaf_3432 3668129 .. 3668142 +  -4.5  -4.16307   CTTCAACCCCCGGAA               GTTCG TGGT CGGAC                TCTTTTTGTTCAGGA  64 221
   Dhaf_3440 NONE
   Dhaf_3441 NONE
   Dhaf_3442 3676525 .. 3676556 + -13.1  -4.88067   TCACAGGCGCTTCCA      CATCTGGGTTGAG CTTCGT CTCGGCCCAGATG       TTTTTGTCGCTGCCT 100 183
   Dhaf_3445 NONE
   Dhaf_3446 3679089 .. 3679127 + -12.5  -4.05446   CCGAACAGGAACTTG  C-AAAGAACCCTGGCCAC AGTC GCGGCCAGGGTTCTCTCG   TTTATACTTAAAGAA 100 50
   Dhaf_3467 3701434 .. 3701445 +  -4.4  -3.72765   TAATAACACTAAGGA                GTCA GATT TGAC                 TTTCGGCTTTGAATT  54 57
   Dhaf_3468 3702813 .. 3702863 + -11.3  -4.67697   CTTGTCTTATTAATA ACAATAACCAACAACCAAGAAGG TGTTC CCTTCAGAGTTGTTGGTTATTGC TTTATTATTTTGCCC 100 47
   Dhaf_3475 NONE
   Dhaf_3476 3710395 .. 3710437 + -15.7  -4.90296   TAAAAACCGGTAGAG GGAGCATGGCAGAGCTACTT TCAG GGGTAGC-CGGCCATGCTCC TTTTTCTCCACTTTT 100 38
   Dhaf_3498 3731242 .. 3731253 +  -7.2  -3.51924   GACGAGTACTTCCAA                CCGC AATA GCGG                 TTATCTGACTCAAAA  66 448
   Dhaf_3499 NONE
   Dhaf_3500 3733158 .. 3733191 +  -8.9  -4.56367   GGAATTTGAAACAAA     GCAAGCCT-CCGGAGA GCT TCTCCAACAGGCTTGC     TTTATTTCTGGCCTA  93 240
   Dhaf_3539 3765993 .. 3766029 + -10.8  -2.92111   TAAACCCGATGGCAA   TCCCTTCCGGCAGC-CC ATAA GGAGCAGCCAGGAGGGA    TACATTTTTTAGACA  74 173
   Dhaf_3573 NONE
   Dhaf_3574 3799902 .. 3799946 + -11.6  -4.12738   TTTCCTCCCACAAAA TCCAAAACCTCCCTATACCTT CAAT ATGGTGCAGGGAGG-TTTGGA TTTCATTTCATCTCA 100 135
   Dhaf_3583 3807235 .. 3807252 + -12.7  -4.46404   TGATTAATACAAAAA             CGGTGCC GAAT GGCACCG              TTTTGATCTTCCTTA 100 85
   Dhaf_3588 3811914 .. 3811938 + -15.9  -5.27779   GCAACGAAGCAAAAA          TAAGATCGGAG CAG CTCCGATCTTA          TTTTTTCATATTAAG 100 23
   Dhaf_3604 3828017 .. 3828053 +    -6  -4.13767   TAATTGCGCATAAAA   GCGTGTTG-GGAT-TGCA TAG TGAGTATCCGCAACACGC   TTTTACCATACGGCA  68 50
   Dhaf_3630 NONE
   Dhaf_3631 3856879 .. 3856911 + -14.2  -3.86031   AATCATTGCAACAAA     GGGAGGCCGC-AACT GCTT AGTCAGCGGCCTCCC      TTATTACTTCCTTAC 100 39
   Dhaf_3637 3862662 .. 3862683 + -13.1  -4.42639   CACTTACAAGGAAAA           GAAGCGAGT TGTC ACTCGCTTC            TTTTCCTTAACCTGT 100 117
   Dhaf_3714 3946881 .. 3946891 +  -2.6  -3.61764   GTACAATTGTTGTCT                 TTTT GTG AAAA                 TTTACGAATTCCTCA  50 235
   Dhaf_3722 3958978 .. 3958988 +  -6.8  -3.28924   TGCTTAACCCAGCGG                 TCCC CCA GGGA                 TTCTGCCGCAGCCTC  59 248
   Dhaf_3724 3960020 .. 3960063 +   -22  -3.92075   ACAAGGACGGTAATG AGGGCTCGTAAGATTCGAAT CCAG ATTCGAATCTTGCGAGCCCC TTTCTAAATGCCGGT 100 42
   Dhaf_3732 3967627 .. 3967681 +  -6.6  -4.62471   TAAAATGAGAGAATC CTAGGCTCCTCCCACCGTAGTCGGCT GTGAA AATC-ACTACGCTG-GAGGAGCCTAA TTTTTACAAATTCCC  79 33
   Dhaf_3733 3969356 .. 3969400 + -15.8  -5.14477   GACAAGCAGAAATTG CAGACGGCTGAAGAATAGGG TCATC CCCTGCTCTCCAGCCGTTTG TTTTTTGCCTATCTC 100 98
   Dhaf_3770 4005925 .. 4005973 + -10.6  -4.55287   ATGTTTCCGTCACAA T-CAAGGACAGAT-CTTAGCTGCT TTC AGCAGCAAAGGATCTGTCCTTACA TTTTCTATAACTGAG 100 40
   Dhaf_3778 4013776 .. 4013787 +  -2.2  -3.90949   TCTGAACGCATCTTA                GGGA TTGT TCTC                 TTCTATTTGATCTTT  53 140
   Dhaf_3779 NONE
   Dhaf_3780 4014453 .. 4014467 +    -5  -4.07885   TTAGGATTCGCAAAA               TTCGAT GTT GTCGAA               TTTTGGAAGGGCATG  63 41
   Dhaf_3781 4015154 .. 4015168 +  -8.5  -4.76963   TCCAGAATGAAAAAA               GCGGC TGTCT GCCGC               TTTTCTATTCTATCG 100 91
   Dhaf_3789 4025880 .. 4025910 +  -2.6  -4.73108   TGCAGTGCAAGGAAA      GCGAGTCCTTTGGT GTAAA ACCT--GGACTCGC      TTTTCGTTTTATGGC  64 49
   Dhaf_3790 4026758 .. 4026777 + -12.2  -4.41206   TTTTTATAGACAAAG            GAGAGCGA AAAT TCGCTCTC             TTTTGTCAACTGATT 100 63
   Dhaf_3791 NONE
   Dhaf_3792 NONE
   Dhaf_3793 4030160 .. 4030198 + -13.3  -3.35384   GCCCTCATAAGCAAA  CAGAGTCCTGAATAGCCG GAGG TGGCC-TTCAGGACTCTG   TCTTATCTCCATTCT 100 48
   Dhaf_3797 4034041 .. 4034055 +  -7.1  -5.44119   AAATGCAACCTTAAG               CAGCC CTAGT GGCTG               TTTTTTTGCCATCAA  95 27
   Dhaf_3800 4037959 .. 4037981 +    -7  -4.13561   AGTAATGCTGTTAGC           TCAAGCCCCT CAA AGGAGTTTGA           TATTTTTTGGGAGAC  71 36
   Dhaf_3809 4047718 .. 4047751 + -11.2  -2.71742   AGTAAGGAACCATGA     GAAAAGCAGGAG CGCATCAAAA CTCCTGCTTTTC      TGAATTGTATTTTCT  76 45
   Dhaf_3828 4068666 .. 4068676 +  -4.6  -4.13995   GGAATCAAGACTCTC                 CCTG CGC CGGG                 TTTCCTTTATCGCCG  63 244
   Dhaf_3831 4071015 .. 4071033 +   -16  -3.83502   ATGCAATAATCATGA             CCACCCGC TCA GCGGGTGG             TTTGCTCTAGCCCTA 100 32
        rpmB 4078813 .. 4078836 +  -9.6  -4.86862   TAGAGTGTAACTTGG          CTGGTATCGT TATG ACGGTGCCAG           TTTTAGTTTTTTAGA 100 59
   Dhaf_3856 4098429 .. 4098463 + -13.8   -5.2189   CCGTTAAACGCCAAA    GCCTTAGAGAGACTG ACATTA CAGTC-CTCTAAGGC     TTTTTTGATCGTTCC 100 46
   Dhaf_3857 NONE
   Dhaf_3858 4099363 .. 4099419 + -27.9  -3.11476   GCCTGAGACCACCCT TAAATGCCAAAGCCTTAGAGAGACTG ACATTA CAGTC-CTCTAAGGCTTTGGCATTTA TAATTTTCCATCGCT 100 119
   Dhaf_3867 4106985 .. 4107037 + -25.4  -4.37886   CCTGGACTAAATGAA TTTGGCCGTTTTG-GATTGACTCAT CCAG ATGAGTCGATCTCAAAACGGCCAAA TTTTATCCCCCCTAG 100 71
   Dhaf_3870 NONE
   Dhaf_3871 NONE
   Dhaf_3872 4111721 .. 4111773 + -26.8  -4.56597   ATAGCTAAATGAAAA TTCGGCCGTTTTGCGATGGATTCAT CTAG ATGAGTCCATC-CAAAACGGCCGAA TTTTTAAGCAAAGAA 100 70
   Dhaf_3875 NONE
   Dhaf_3876 4113149 .. 4113170 +  -4.5  -2.65354   AATGCGCGATTGTCC           CGGCTTATTC AAT GAATA-GTCG           TAACTTTCCCATGGG  48 7
   Dhaf_3877 4113375 .. 4113386 +  -4.4  -3.60048   TGCCCACTCCCATGA                CCAT GGCA ATGG                 ATTTTTTGGGCAGCA  54 46
   Dhaf_3903 4138813 .. 4138827 +  -4.3  -3.18582   ACCCAATGTGGCATA               TTCAG ATTGC CTGAA               TTCCTCGATCAAATG  49 353
   Dhaf_3905 NONE
   Dhaf_3906 4143846 .. 4143890 + -19.6  -3.93288   TATCCCCGGCAATAT GC-CAAGATGGACTGCCTCAT CCCC ATGAAGCAGTCCATCTTGTGC TTTAATTCAATACAA 100 60
   Dhaf_3914 4150290 .. 4150329 +  -6.7  -4.49353   AAAAAAAATAATAAA CGGTGCTC-AAAAC--TGGT CAA GCCAATGTTTTTGAGCACCG TTTGTTCTGTTATCA  76 164
   Dhaf_3916 4155321 .. 4155347 +   -13  -4.62054   GCCTACTATAAAAGA         TAACGCCGGAGC AGA GTTCCGGCGTCA         TTTTGCTTTGCTTGC 100 53
   Dhaf_3917 4155704 .. 4155747 + -12.5  -4.04209   TAATGACTAAGAACG CGAAAGCCTGCAGAATCCA AAAGTA TGGAGCCTGCAGGCTTTCA TTTCTCATCATTTCC 100 31
   Dhaf_3919 4158130 .. 4158162 +   -12    -4.788   TGGCACATCACAAAA      GCCTGCAGAATCCA AAACA TGGAGCCTGCAGGC      TTTTTCCATTCATTT 100 130
   Dhaf_3923 4161289 .. 4161303 +  -2.8  -3.79481   AGTGGGGAGACATCA               TGAGGA ACT TGCTCA               TTTAACTTAACTTTG  52 140
   Dhaf_3929 4165315 .. 4165360 + -30.9  -3.73953   TTTTTCATCAAATAA GAGTCTGTCCGAAATAGGTAC GCGC GTACCTATTTCGGACAGACTC TTTCCTCCGCATAAT 100 331
   Dhaf_3951 4192731 .. 4192751 +  -2.6  -3.08991   TCCTTTATAATAGAG            AGATGATA ATCTG TATCATCA            ATTTATTCAGGAGGT  44 61
   Dhaf_3952 4193800 .. 4193812 +  -6.3   -2.7464   GCTGCCGGACAAATA                CTTGA TTG TCAAG                ATTTAAGAATAGATT  53 122
   Dhaf_3961 4205142 .. 4205154 +  -6.3  -4.21465   ATCCTGCAACAATTC                CTCTT TTA AAGAG                TTATTTGCTTTTGAA  71 517
   Dhaf_3979 NONE
   Dhaf_3980 4234236 .. 4234254 +  -2.4  -4.90917   AATAGTGGGAATTAT            TCAGGCC TCATCC GGCC-GA             TTTTTCATTCGGTTT  66 190
   Dhaf_3981 NONE
   Dhaf_3982 4236965 .. 4236981 +  -5.1  -2.97188   ATATTGACCGCACCG              GAGAGGG GCC CCTTTTC              TATCTGCTGGTATGG  52 366
   Dhaf_3996 4248706 .. 4248719 +  -5.3   -2.9059   GTATACTGAAAAACA               CAAAC ACAA GTTTG                CTTCTTATGATGAAT  52 306
   Dhaf_4001 4251826 .. 4251841 +  -7.6  -2.92246   TGCATGATATAGAAC              TCCTCT ATAT AGAGGA               TATCCTTGCAATTCA  62 44
   Dhaf_4002 4252225 .. 4252243 +  -3.1  -3.76885   ATTTCCTAAGTAGCA             GATCTCA TTTAT TGGGGTC             TCTGTTTTTTTAACG  53 28
   Dhaf_4004 4253182 .. 4253212 +    -4  -3.63298   CACCTACCATAAGCG       CCGGTAGTCC AAGGCCAAAAA GGGCTACTGG       TATTGTTTCCTTAGC  55 413
   Dhaf_4031 NONE
   Dhaf_4032 4282597 .. 4282607 +  -6.8  -4.87892   CAAGAAACTCCTCTT                 CCTG TGA CAGG                 TTTATTTTATTAGCG  83 201
   Dhaf_4094 4345016 .. 4345053 + -14.5  -4.57837   TTGACATCGTAAAAA   TCTAGGATAATATAATG CCTA CTTTATATTATCCTAGA    TTTTTACGAGGATGT 100 508
   Dhaf_4095 4346046 .. 4346063 +  -8.5  -3.53012   TTACCGCCTGTCAAA             TTCGACA CCAG TGTCGAA              TTTGACAGGCGGGGA  71 77
   Dhaf_4096 4347580 .. 4347610 + -15.4  -2.74605   CTATTCATTAGAAAA       GCACCCTGCTTGCC TTT GACTAGCAGGGTGC       TGAATTTTGGAACGG 100 67
   Dhaf_4101 4353567 .. 4353584 +  -9.9   -4.5442   CGAAAGACGGAAAAA             GGAAGTC CTGC GACTTCC              TTTTATACTTCCAAG 100 60
   Dhaf_4141 4388595 .. 4388622 +    -2   -2.5071   ACTCCATTTTTGTAA        CTTTTTCCCA CGATAGTT TGGGAATGAG         ATGGTTTCTTGTTGC  39 56
   Dhaf_4158 4404215 .. 4404226 +  -5.8  -3.94002   GAAAGGTATCGATAT                GACC CATC GGTC                 TTTAATTCAATGGTC  66 72
   Dhaf_4159 4406454 .. 4406465 +    -3  -3.14881   TTCCCTAATGTACTA                TCAA ATCT TTGA                 TTAATAGCCACATTA  45 249
   Dhaf_4170 4415214 .. 4415229 +  -3.2  -3.32268   GTATGTGCCGAGTAT              TGATGC TTCC GCCTCA               TTCTCAACATCGTTC  47 299
   Dhaf_4199 NONE
   Dhaf_4200 4447839 .. 4447864 +  -4.6  -4.08216   CGGAAACCACCATAG         CGCTGGCGCT CACTTC AGCGGCAGCC          TTTTGCACAGCCTCA  62 261
   Dhaf_4202 NONE
   Dhaf_4203 4450059 .. 4450109 +  -9.9  -4.57569   ATATTTTTGCCATCT ACCCCTGTGTCA-TCGGAAAAGGA AGAT TCTTTTTCGGAGTAACACAGGGGA TTTTTAAAAGAATCG 100 51
   Dhaf_4204 4450671 .. 4450710 + -13.9  -4.21465   ATGCGCCTTTTGATT  TG-CACGAAAAAGGGACT TTTGC AGTCCCTTTTTTGTGTCA  TTATTTAATTTTAGC 100 66
   Dhaf_4209 4454319 .. 4454332 +  -5.3  -2.74012   CCCATTATTTAGATT               TCCTT ATAG AAGGA                TAATTAGGCTCCTCA  50 29
   Dhaf_4210 4454774 .. 4454813 +   -10  -4.59081   GTTGAGTAAAAATAA  AGGGACGGTTCAAAGC AAAAACAC GCTTTGGTCCGTCCCC   TTTTATCTCAATTTA 100 32
   Dhaf_4218 4464026 .. 4464067 + -15.3  -4.72986   ACATTCGTATTTAAG AGAGTGCCGCCAAACTACTT TTC AAGTAGTG-GGCGGCACTCC TTTTTGCTGGCACTA 100 40
   Dhaf_4228 4476953 .. 4476989 + -18.4  -4.67353   GAAATCTATAAAAAA    TGAGAGGTAATAATTC TCTGC GAATTATTACCTCTCA    TTTTTACATAGGTCA 100 23
   Dhaf_4232 4482331 .. 4482348 +  -2.8  -3.04398   TATCATTTATATAAA             TTCAAT TATTAT ATTGAA              GTTTTAGACAAAAAA  43 238
   Dhaf_4243 4492508 .. 4492530 +  -7.6  -4.06419   AGAGATGTTGAGGGA           GGACCTCCAC CAA GAGGAGGTGC           TTATTTATGGGCGAA  74 71
   Dhaf_4244 4493673 .. 4493702 +    -5  -4.82678   GACATTAATCCTTAA       CGGGCTTGCT GAGCGGGGAA GGCAAGCTCG        TTTTCGTTTTTCTAC  74 52
   Dhaf_4263 NONE
   Dhaf_4264 NONE
   Dhaf_4265 4514630 .. 4514661 + -14.6  -2.62396   ACGTCGCAGGTGTAA      CAAAAGACGACTTC CACG GAAGCCGTCTTTTG       TCATATCCCAGACTG 100 107
        rpsT 4576200 .. 4576246 +   -32  -4.00234   AAAACGACATAGAAA GAGCGTGTCGCTCTGTGTTTAT ATT ATGAACACAGAGCGACACGCTC TTCTTATATTGCTTA 100 67
   Dhaf_4320 NONE
   Dhaf_4321 4584804 .. 4584830 + -11.8  -5.31275   CAGTTGTAAGGCTTC         GATATCTCTTTG ACC TAAAGAGATATC         TTTTTTATGCTGCCG 100 414
   Dhaf_4362 4628534 .. 4628564 + -19.9   -5.8187   TCAACATTAAGACAG       CTGAGGCAAGGGA TCTGT TCCCTTGCCTCAG       TTTTTTTATTCCCTC 100 48
   Dhaf_4365 4632115 .. 4632127 +  -3.4  -4.85599   TCCTCAGTTCCAAGA                CTGT TGCGC ACAG                TTTTTATGACATAAA  73 511
   Dhaf_4370 NONE
   Dhaf_4371 NONE
        trpD NONE
   Dhaf_4373 NONE
   Dhaf_4374 NONE
   Dhaf_4375 NONE
   Dhaf_4376 4645398 .. 4645452 + -19.6  -3.49756   AAGTATAGCGTTAAA GAAAAAGGGGTGCCGCAAAACGTTG ACTCAC CAACGTTTTGCGGCACCC-TCTGTC TTATGCTGATTCTTC 100 153
   Dhaf_4380 4650490 .. 4650537 + -27.3  -3.33696   AAAATCATAGAACGA CAAAAGAAGGCCTCCGGCAGA TTTTGC TCTGCCGGAGGCCCTCTTTTG TTGCTTGCCGGGCCG 100 103
   Dhaf_4394 NONE
   Dhaf_4395 4667654 .. 4667684 + -22.7  -2.73483   GAATATGGTTAAGCA       GAAGGCCCCGGGA ACGAA TCCCGGGGCCTTC       TGCTTAAAATGAACT 100 75
   Dhaf_4408 4679958 .. 4680005 +   -31  -4.59109   TCTCTAGTGAAAAAA TGGGGACAGGTACCGTTTTTCA ATTA TGAAAAGCGGTACCTGTCCCCA TTTTTCACCCCTGTC 100 34
   Dhaf_4410 4681559 .. 4681603 + -33.3  -3.36289   CCACTAGTGAATCAA GGGGACAGGTACCGTTTTTCA TAT TGAAAAACGGTACCTGTCCCC TTGATTCACCTAATC 100 34
   Dhaf_4420 NONE
   Dhaf_4421 NONE
   Dhaf_4422 NONE
   Dhaf_4423 4692493 .. 4692508 +  -3.2  -3.62032   ACAGGCCTTAAGACA              CCGG CCAAAAAT CCGG               TTTGACCCTTGCTGT  53 425
   Dhaf_4434 NONE
   Dhaf_4435 NONE
   Dhaf_4436 4705247 .. 4705280 + -13.3  -3.63744   GCGCAGATAATCAAA     TGAGTGTCACCGACTG CTT CAGT-GGTGACACTCC     TCTTTTACCAGCAAA 100 31
   Dhaf_4437 4706969 .. 4706995 +  -3.8  -5.31545   AGAGTTAAAAGAAAA        GAATCCG-CTA CCTGAA TGGTCGGATTC         TTTTTTAATCTTATT  80 67
   Dhaf_4441 4709695 .. 4709719 + -10.8  -4.52047   GTCCATAAGCCAAAA          CCTCACGTTT ATAAA AAGCGTGAGG          TTTTCTAGTATCCTG 100 41
   Dhaf_4445 NONE
   Dhaf_4446 4715155 .. 4715202 + -28.9  -5.14563   CTCCAGCCCCCCTTA GTTTGCCTATCCCAAATCGGA CACGAA TCCGATTTGGGATAGGCAAAC TTTTTTAGTGACAAA 100 132
   Dhaf_4447 4718484 .. 4718497 +  -5.2  -3.05844   GCATTCCTCTCCCTC               CGGC CTAGGT GCCG                TCTTAAACTGAGGAA  52 348
   Dhaf_4448 4719536 .. 4719548 +  -2.7  -3.69083   TTTGCTTTTCCTCTA                CAGTT TAC AATTG                TTATATCTGTATTAC  51 499
   Dhaf_4458 4728426 .. 4728442 +  -4.5  -3.35996   ACGCCTTAAAATTTG              TTACAGT TAA ATTGTAA              TTATGGCTCCCCATG  53 46
   Dhaf_4459 4730211 .. 4730230 +  -2.2  -4.64766   GAACCTTTCAAACCC            TTGAAATT CAAT AGTTTCAG             TTTTTGAGGTGTCAA  63 85
   Dhaf_4476 4751448 .. 4751490 + -23.7   -3.7941   ATTTGCAACACACAA CAGCCCCCTATGGTAGATG CTTGC CGTCTATCATAGGGGGCTG TTATTATGAGACCTA 100 87
   Dhaf_4488 4769789 .. 4769808 +  -5.7  -5.75342   AGAATAACTCTGAAA            GCATCTG TTTATT CAGGTGC             TTTTTTTTAACCCAA 100 48
   Dhaf_4489 4772200 .. 4772239 + -10.9  -4.42653   AATCCAAATAGATAA GGGAGTGTCGTTGGCTGCT TCAC AGCAGCT-G-GACACTCCC  TTTTATAACTCCAAT 100 47
   Dhaf_4491 NONE
   Dhaf_4492 4773158 .. 4773178 +  -4.6  -4.65895   AAGGTGTAGGCAAAA            GCCGTCTT TCATT ATGGCGGC            TTTTTAGCTCACGCC  71 39
   Dhaf_4493 4774474 .. 4774484 +  -2.4  -3.41366   AATAAGTAAGCATTT                 GAGG AGG CCCC                 TATGTTTTGGAATAA  47 111
   Dhaf_4494 NONE
   Dhaf_4495 4777304 .. 4777322 +  -5.2  -2.90841   GAAACCACTGGTTCA             CATCAGGT ATT ACCTGGAG             GTTTGGTGTAGCTGT  52 296
   Dhaf_4496 NONE
   Dhaf_4497 NONE
   Dhaf_4498 4781372 .. 4781386 +  -2.8  -3.44527   TTTAAGTTTAGGAGA               TACCCA CAA TGCGTA               TTCTGCTGCTAACTC  48 48
   Dhaf_4499 NONE
   Dhaf_4500 4783229 .. 4783263 + -13.1  -4.29119   TTAAGCAAAGAAAAG     CGACCTTATTCTACT TTTGC AGTACAATAAGGTCG     TTCTTTATTATCGTA 100 37
   Dhaf_4519 4803534 .. 4803566 + -21.5  -3.76402   CTTAACTTGGTCAAA      TGAAAGAGGAGGGCG CTT TGCCCTCCTCTTTCA      TTTAATAACTCAGGT 100 43
   Dhaf_4527 4812850 .. 4812877 + -18.6  -5.28942   GACGGCATTTAAGGT        GAGACGGTCATG AATC CATGACCGTCTC         TTTTTATTTAGCCTG 100 29
   Dhaf_4536 NONE
   Dhaf_4537 4828092 .. 4828135 + -17.7  -5.54907   GATCAGGCAAAAAAA GCGGATGAAG-CATGTGAAC ACGCC GTACACATGGCTTCATCCGC TTTTTCTTTTATGCC 100 138
   Dhaf_4546 4839621 .. 4839639 + -10.2  -4.90136   CCACATATAATTAAA             CCGCCCTC AAG GAGAGCGG             TTTTTCGTATTGGTT 100 80
   Dhaf_4561 4854236 .. 4854265 +  -7.8  -5.58179   GGCCTAATAGTTAAA       GCCAGCCCCCTT AGCTTG AAGAGGACTGGC        TTTTTTGTTGTGCTG 100 51
   Dhaf_4625 NONE
   Dhaf_4626 4928965 .. 4929017 + -16.8  -4.32579   ATAACCCGCCTTGAA CGGCTGAAATCTATAATTATTCTTT GCTT AAAGAATAATTG-GGGTTTCAGCCG TTTCTTATGAGATCT 100 56
   Dhaf_4627 4931074 .. 4931101 +   -13  -3.33696   GTGAGTAAATGTTAA        TATAACATCGTT ATAT AACGATGTTATA         TTAATTCGACAAGGG 100 117
   Dhaf_4628 4931793 .. 4931808 +  -7.6  -3.75153   ATTTTTTGCCTATAA              GTTAGC AGGA GCTAAC               TTTAACTTAAACAAG  72 64
   Dhaf_4629 NONE
   Dhaf_4630 4935576 .. 4935588 +  -4.1  -3.52539   TCGGAAAGACGTTTA                TGGAA AGC TTCCG                TTGTCGTTCCCATTC  52 225
   Dhaf_4640 NONE
   Dhaf_4641 NONE
   Dhaf_4642 4951675 .. 4951702 +  -7.1   -2.7924   TAACCGGAATTGGAT       GTGTCCGCC-CTA ACGT TAGTGGCGG-CAC        TGCTGTATTCTCATC  59 115
   Dhaf_4648 4957832 .. 4957866 + -12.3  -4.92757   GCAGATAAGTAATAA    GCCTTGAGTTACG-TC AGAC GATCGTATCTCAAGGC     TTTTATTATTCATCA 100 60
   Dhaf_4649 4960344 .. 4960377 + -11.9  -4.15849   CCTAATAATAAAAAG     GCCTTGAG-CGCATAG AAT TTATGTGCCTCAAGGC     TTTGGTTCTTATTAT 100 73
   Dhaf_4652 4961539 .. 4961568 + -12.2  -4.67982   TACCCCAAAATAACT       AATGCCATGCGG GTTTGA CCGCATGGCATC        TTTTATTACCTAAGA 100 207
   Dhaf_4663 4975276 .. 4975304 +  -5.4  -3.36968   GAAATTCCGAAATTC        TGTTAGTCTG TTTTATTTT CGGACTAACA        TTATGAAATTAACTC  55 55
   Dhaf_4668 4981834 .. 4981847 +  -8.1  -3.41454   TAAAACTGTCACCTT               GGCCT GGCA AGGCC                TTGTGGCTAGTTTAT  68 51
   Dhaf_4669 4982317 .. 4982354 + -17.1  -4.86001   TGCCATCTTCGCCAA   GGCCCAAGGGCTTTC TCTCAATT GACAGCCCTTGGGCC    TTTTTATGACCTGAT 100 81
   Dhaf_4671 4984035 .. 4984055 +    -9  -4.91109   GTCCATCCGGAAAAA            GCCTTCCA CAACC TGGAGGGC            TTTTTCTAATGAAGG 100 64
   Dhaf_4672 NONE
   Dhaf_4673 NONE
   Dhaf_4674 4987794 .. 4987832 + -19.2  -5.29385   TTGTTCTTGACGAGA   TGACACAGGTGTCATA CACTTAA TATGACACCTGTGTCA   TTTTTTCATTAAGTT 100 73
   Dhaf_4675 4988530 .. 4988544 +  -4.2   -4.4078   TTGAAAAATAAGGAG               GCGTTG CCA TGACGC               TTTTACTTGAAGGAA  63 14
   Dhaf_4676 NONE
   Dhaf_4677 4991657 .. 4991667 +  -3.2  -3.10493   CTTAACTCTAATTAA                 GGAG GTC TTCC                 TATGTCTGTTGAACC  46 68
   Dhaf_4678 4993097 .. 4993129 +  -8.5  -4.66537   AGTCTATACGCCTTG      CGAGGGCTTCTAC ACAAAAA GTAGAAGCTCTCA      TTTCTTTGATTTATT  91 125
   Dhaf_4683 4999673 .. 4999688 +  -2.6  -5.29445   CAAATCAGCATACCC              CTGTCCT TTA AGGA-AG              TTTTTATTCTTCCAG  77 366
   Dhaf_4703 5023356 .. 5023386 +  -7.6  -4.19258   GGGCGAACATAAAAA       GCGAGTCCGT TGGCCTAAAAC GCGGACTCGC       TTTTGAATAGACTAT  76 88
   Dhaf_4707 NONE
   Dhaf_4708 5026279 .. 5026314 + -20.7  -3.19668   GCCCAGTAAGAAAAA    CCAAAGGATACCCCT GGTTAA AGGGGTATCCTTTGG     TTGGCTTAACTCCTC 100 69
   Dhaf_4711 5028436 .. 5028475 +   -10  -4.56367   AGAAGGATGGCAAAA  GACTCCCCTATGCAGTTT CCTC AAACTGCACGGAGGAGCC   TTTCTTTATCAGCTC 100 39
   Dhaf_4725 5046368 .. 5046404 + -16.7  -3.83169   ATACAGACGAAAACA    GGGCTGTGCCAAACC ATCATCA GGTTTTGCACAGCCC    TTTCCTAAGTTTATC 100 122
   Dhaf_4728 5049797 .. 5049831 + -18.8  -5.07941   CTTCACCCTGGATTT     TGCCAAAGAGAGTCTT GCA AAGACCCTCTTTGGCA     TTTTTCTGTCCTTTT 100 74
   Dhaf_4731 NONE
   Dhaf_4732 NONE
   Dhaf_4733 5053123 .. 5053172 + -14.7  -3.72788   TCCAATACAAAAAAA TTGAACTGCATTTCCCATTGTT ATTTGCC AGCAATGGGA-GTGCAGTTCAA TTCTATCTTATGGCC 100 157
   Dhaf_4738 5063398 .. 5063432 +  -8.7  -5.06816   GGAATATGATGAAAA     CCCCTAAACATTG CAGCTAAAA CAATGTTCAGGGG     TTTTTCTTCAGGGCT 100 32
   Dhaf_4756 5081368 .. 5081389 + -14.5  -4.22554   TAACTGGAACCCTGA           TCCCCCAAC TGCG GTTGGGGGA            TTCTTTCTTGAATGG 100 48
   Dhaf_4759 5083582 .. 5083640 + -12.7  -3.68619   ACAAGATGCTGACAG CACAAAGCTCTCCTGGGG-AGAA-GTTCC GCT GGAACCTTCTGCCTCAGGAGAGCTTCATA TTTAAGTACGTTGAC 100 29
   Dhaf_4765 5088800 .. 5088838 +  -8.3  -5.00616   ATCCAGCTTGTAGAC  TAAAACCGTTTCTATGCC GTCA GGC-TCGAAACGGTTTTC   TTTTTTCGCCAGGCC 100 135
   Dhaf_4766 5092517 .. 5092529 +  -2.7  -2.57211   ATCCAGCGTTAAAGT                TAAGG AGG CTTTA                CTTATGAACGAGAAT  41 54
   Dhaf_4767 5092759 .. 5092797 + -12.6  -4.87291   AATTAAACATTAAAA   GAGAAGGGGTTTTGGA AATACAG TCCGAAAACCCTTCTC   TTTTTCATTCCAATG 100 78
   Dhaf_4768 5094425 .. 5094436 +  -5.8   -3.2963   TTCTCCCCCGGAAAG                GGAG GAGC CTCC                 TTCTCCCACCATGGT  57 312
   Dhaf_4802 5130539 .. 5130551 +  -3.4  -2.99543   CTCTTATTGACCCAG                CAAG GTGTA CTTG                ATCTTTTTCGTGCTG  44 268
   Dhaf_4803 5132024 .. 5132039 +  -5.4  -3.43773   ATTTAATTATCGAAC              GCACTT TCGG AGGTGC               TGTTTCAATGTCAAA  57 246
   Dhaf_4804 5132957 .. 5132977 +  -8.3  -4.82819   TTAATTTGATTCTAA            GGAGTGCTT TAT GAGCACTTC            TTTTGTTATGCTATG 100 12
   Dhaf_4805 NONE
   Dhaf_4806 5133998 .. 5134045 +  -4.2  -3.90744   AAGAACATAACACCA GGCTCTTATTACAACC-TGCCTC CAG GAGAAAAGGTGATGATAAGAGCC TTCTTTGAAAAACAC  57 85
   Dhaf_4807 5136247 .. 5136264 +  -8.5  -3.56092   TTTTCTTATTCCAAA             TTCCCAA ACGT TTGGGAA              TTTCACCAATCCTAC  71 52
   Dhaf_4808 NONE
   Dhaf_4809 5138067 .. 5138077 +  -3.2  -3.41978   GGCGAAAAGGCAGCC                 GGTT GAA GACC                 TTCATTCAATTCTGG  49 20
   Dhaf_4810 NONE
   Dhaf_4811 NONE
   Dhaf_4812 NONE
   Dhaf_4813 NONE
   Dhaf_4814 NONE
   Dhaf_4815 NONE
   Dhaf_4816 NONE
   Dhaf_4817 5142929 .. 5142949 +  -4.1   -2.9006   TAATTGCACAGGGGG            TAATTTAAC ATG GTTGAGTTA            TATGTGAAGTGGCTT  46 18
   Dhaf_4818 5143105 .. 5143119 +  -4.2  -4.25873   TACGCAATACCACAA               CGCC AACACAG GGCG               TATTTTTTATCCCCA  63 49
   Dhaf_4819 NONE
   Dhaf_4820 NONE
   Dhaf_4821 5144771 .. 5144783 +  -3.4  -4.77759   CCAGGAGGCGGCTCA                GTTC CTGAA GAAC                TTTTTCATAGCTTGT  69 229
   Dhaf_4823 5146223 .. 5146244 + -15.9  -4.49939   AATAATATGCTGACA           GGGCTAGGG AAAT CCCTAGCCC            TTTTCTGCATTATAT 100 36
   Dhaf_4834 5154278 .. 5154295 + -11.3  -4.82901   AACTGTAAAGAAAAA             GCAGAGC ATGC GCTCTGC              TTTTTCTCCAGCAAC 100 140
   Dhaf_4852 5174014 .. 5174056 + -18.7   -5.1675   CCGGTACGAAAAAAA CAAGAG-AAGGCGTTGTCCC GCAG GGGATAGCGCCTTTCTCTTG TTTTTTCCTCAATCG 100 76
   Dhaf_4853 5175096 .. 5175129 + -10.4  -3.57601   TCGAACTAGCTCAAG     GGGCTTATGACCTGC TCTAC GCAGC-CATAAGCCC     TTACTGTTGTTTTTT  82 32
   Dhaf_4866 5187186 .. 5187216 + -19.9  -4.42851   AAATGGGTCGGGGAA       CTCCCCGGGAAAT CGGCA ATTTCCCGGGGAG       TTTTAGCTTTATTCA 100 55
   Dhaf_4873 5197211 .. 5197234 +  -3.2  -3.44381   AAAACCTGTAATGAC          CGTCATCTTAT CTG AT-AGGTGGCG          ATTTTTCCCTTGCAT  49 65
   Dhaf_4874 5198641 .. 5198680 + -14.4  -4.30448   AGCCCCCGCTAAAAA  GGCCTGTGCTCT-TGCGTT ATA AACGCCTGGAGCACAGGTC  TTTTAAATTACCTTT 100 40
   Dhaf_4875 5199606 .. 5199630 +  -8.5  -3.40022   ACACATGCTAAAAAA          GACCGGAGC ACCACCA GCCCCGGTC          TTACTCTATTAATTC  69 69
   Dhaf_4879 NONE
   Dhaf_4880 5204353 .. 5204372 +  -2.8  -2.52464   TGAATAACAACCCTA            TGCGAATG AAGC CAATTGCA             TAAGTTAAAACAGAA  41 34
   Dhaf_4881 5204575 .. 5204600 +  -7.7  -4.86001   TATAACGAGAAAAAA         TAGTCACGA ATAAACCA TCGTGACTA          TTTTTATACACTAAT  91 23
   Dhaf_4884 5208804 .. 5208834 + -19.9  -2.96979   TAGATGACAAACTAC       GAGACACCTCTCC CTTGC GGAGAGGTGTCTC       TCTGTGCCTTATCCT 100 82
   Dhaf_4886 5210308 .. 5210338 +  -6.1  -3.07994   TAGTCCCACCCCTGC      TCCTGCCAAGCCGC CAAA GCGGCATGG-AGCA       TTCCATGAACTTGAA  53 236
   Dhaf_4911 5234616 .. 5234641 + -10.6  -4.15698   GGCCTGGTTTTTAAT         GCTGAGATAA CTTTGT TTATCTCAGC          TTATTTATGTCGATG  91 49
   Dhaf_4913 5236958 .. 5236985 + -13.4  -3.94634   AGCACTAAAAAGAAA        CCCTGGCCGCTC CTTG GAGTGACCAGGG         TTCTTTGCGCTGGTA 100 44
   Dhaf_4946 5266865 .. 5266882 + -11.3  -3.54129   AACTTTGTCCCCAAA             CGCGACA ACGT TGTCGCG              TTTGGGGACAATATC  89 214
        rpmH 5278719 .. 5278736 -  -9.1  -4.62783   TATTCATTTGAAAAA             GGCCACA AGAT TGCGGCC              TTAAGCTGATAATTT 100 26
   Dhaf_4960 5278199 .. 5278212 -  -3.8  -4.57073   CATGTGGGGTAAAAA               CGAC AGGATG GTCG                TTTAAGAGGCGAAAT  65 89
   Dhaf_4959 NONE
   Dhaf_4958 5276681 .. 5276700 - -12.2  -5.90981   TGACAGTAAAAAAAA            GAGGGGTA ACCT TACCCCTC             AGGAAATTTCTTTTG 100 24
   Dhaf_4957 NONE
   Dhaf_4956 NONE
   Dhaf_4955 5272509 .. 5272521 - -10.5   -5.7827   AAGATAAATAAAAAA                GCGCC CAA GGCGC                TTCTCTTAAAATCTT 100 65
   Dhaf_4954 NONE
   Dhaf_4953 5270707 .. 5270722 -  -7.6  -5.10163   AAGTGCAAAAGAAAA              TGTTCC ACGT GGAACA               TTTCTAATCAACTTT  95 29
   Dhaf_4952 NONE
   Dhaf_4951 5269038 .. 5269077 -    -5   -4.8269   GAGAACTATTAAAAA  TGGGGTTGTCGCAG TCCACACCAACG TTGCGACAACCCCT   TCTTCATTTAAATAC  74 68
   Dhaf_4949 NONE
   Dhaf_4948 5267142 .. 5267167 -  -7.6  -4.57581   ATTGTAAACAATAAA         GCCTTCAATC ATTTTA GCTTGAAGGC          TTTTCCGCAATAATG  82 98
   Dhaf_4947 5266852 .. 5266895 - -23.4  -3.14931   TGCATCCGGCACGAA CTTTGTCCCCAAACGCGACA ACGT TGTCGCGTTTGGGGACAATA TCAGGCGGCCGGGAA 100 26
   Dhaf_4945 5264938 .. 5264953 -  -3.2  -2.54233   ATCCCAAAAATAACC              GTATCC GCAA GGGTAC               CCACCTATCTTTTTA  42 30
   Dhaf_4944 NONE
   Dhaf_4943 NONE
   Dhaf_4942 NONE
   Dhaf_4941 5262650 .. 5262674 - -13.7  -2.62263   ACCCCGCCTATAGCA          GAAAAGCACCC TCA AGGTGCTTTTC          CGCATATCAATGACT  93 32
   Dhaf_4939 NONE
   Dhaf_4938 5261147 .. 5261164 -  -4.1  -3.65351   TTATTTTCACTCAAA             CCCTCTA AGAT TATAGGG              GAATCTCGGCCAAAC  54 54
   Dhaf_4937 5259918 .. 5259932 -  -7.2  -2.91383   AGGGGCAGGGATACA               TAGTCT GGA AGACTA               CATAAAGACTACCAT  61 106
        rpsF NONE
   Dhaf_4935 NONE
        rpsR 5258872 .. 5258889 - -12.7  -5.05228   AGGAAAGTATAAAAA             GGGGAGC AACA GCTCCCC              CTCATTCTTTATTCT 100 34
   Dhaf_4933 NONE
   Dhaf_4932 5257404 .. 5257416 -  -2.7  -4.17048   CTGCTTTTAAAATAA                CTTTC ATT GAAAA                CCCTCCATTCTGCTA  57 62
        rplI 5256929 .. 5256942 -  -3.8  -3.70853   CCAATGATTTAATAA               CCCT TTCATT AGGG                ACCCCTTTCACAGTT  53 47
   Dhaf_4930 5254977 .. 5254989 -  -6.3  -4.07568   CTTCTCCTCCTAAAA                CCTTA AAA TAAGG                CATGTTCAAGGGCTT  67 15
   Dhaf_4929 5253606 .. 5253629 - -11.8  -4.20696   CTATTAATCTGAAAA          GCCTAAAGAC TTTA GTCCTTAGGC           CGAAAGATGCTGGCG 100 20
   Dhaf_4928 NONE
   Dhaf_4927 5250438 .. 5250461 -  -8.2  -5.75822   TACAAATTAAAAAAA          GCTTGCATTC CTTA GAACACAAGC           GTTTTTGATAGATAA 100 285
   Dhaf_4926 5248960 .. 5248987 - -15.6  -4.01137   CACATAACGGATAAA        GGGCTGCCGAGT ATGT ACTCGGCAGTCC         TCTCGACAAACCATT 100 59
   Dhaf_4925 NONE
   Dhaf_4924 NONE
   Dhaf_4923 NONE
   Dhaf_4922 5245081 .. 5245107 -  -5.8  -4.68724   GCAGCCAATACAAAA         GCCACACTGCTT GGT ATACAGCATGGC         TTAAAAACAACTTCC  75 327
   Dhaf_4921 5244338 .. 5244364 -  -2.4  -2.97503   CGAACACATAAGAAT        TCGTCACTCAT TATATC ATGAG-GACAA         GTTAGTGTGCAAAAT  42 46
   Dhaf_4920 5244072 .. 5244100 - -11.7   -4.3207   AGATAAACATAGAAA        CAGAACCCGCCTG AAT CAGGTGGGTTCTC        GCGACCTATGTTTAA 100 91
   Dhaf_4919 5242586 .. 5242604 -  -4.6  -2.91395   ATCCCCTCCACAAAC             CATAATAG AAT CTTTTATG             CCTCTTTGATCTTCA  50 21
   Dhaf_4918 5240544 .. 5240554 -  -6.8   -3.7511   TTGTGCACAAGAGAA                 CAGG GGG CCTG                 TCTGCTCAGTCCACC  67 31
   Dhaf_4917 5239796 .. 5239816 - -11.2  -5.04601   TTTAGAAATGAAAAA            CTGAGGCT TATTT AGCCTCAG            CGTTTGCGTCAGACG 100 12
   Dhaf_4916 NONE
   Dhaf_4915 NONE
   Dhaf_4914 5236958 .. 5236985 - -13.4  -4.92756   AGCACTAAAAAGAAA        CCCTGGCCGCTC CTTG GAGTGACCAGGG         TTCTTTGCGCTGGTA 100 151
   Dhaf_4912 5234376 .. 5234386 -  -6.8  -2.81922   GATGATGGAAAAGAT                 CCTG ACA CAGG                 GAGAGGCTATTGCTT  54 369
   Dhaf_4910 5231147 .. 5231159 -  -2.7  -3.47184   AATTCAATCTAAATA                TCTTC GGA GAAAA                TCTGATAAATTGGGG  48 6
   Dhaf_4909 5229144 .. 5229176 - -12.1   -5.1287   CGGAGAGTGAAAAAA      GCGGCTATCAGAA ACGAAAG CCCTGATAGCCGC      TTAGTTAAGTTGCAG 100 54
   Dhaf_4908 NONE
   Dhaf_4907 NONE
   Dhaf_4906 NONE
   Dhaf_4905 NONE
   Dhaf_4904 5222845 .. 5222856 -  -4.4  -3.05521   AGGAGACCCGCAAGA                CGTA GCTT TACG                 TACAAAAGCGGATGG  47 258
   Dhaf_4903 5222296 .. 5222307 -  -5.8  -2.57132   CTCCGTTCGGATAAT                GGCT TTGC AGCC                 GGGTTTGGTGGGGCT  52 64
   Dhaf_4902 NONE
   Dhaf_4901 NONE
   Dhaf_4900 NONE
   Dhaf_4899 NONE
   Dhaf_4898 NONE
   Dhaf_4897 NONE
   Dhaf_4896 NONE
   Dhaf_4895 NONE
   Dhaf_4894 5216709 .. 5216726 -  -2.5  -2.55074   TTGAACCTGAATTCA             GGCCCGG TTTG CTGGGCA              GGTAATAGAGAAGAT  41 5
   Dhaf_4893 NONE
   Dhaf_4892 NONE
   Dhaf_4891 NONE
   Dhaf_4890 5213603 .. 5213644 -  -9.5  -3.69216   CCTTGATTCAAAACA GACGAAGGTC-AAGGTCTCC AAA AGAGAGCGCAGACCTTCGTC CTGCCGGGTTTCTTG  78 47
   Dhaf_4889 5212871 .. 5212884 -  -8.1  -2.68202   TCCATATTAAAAATT               CCAGC GGTT GCTGG                CCTAAGTTAAGGCGA  60 368
   Dhaf_4888 5210719 .. 5210751 - -15.8  -4.83169   AGCCCTGGACAAAAA     GCCAGATATT-CCGC ACCC GCGGGAATATCTGGC      TTAACTTCTTTAGTT 100 53
   Dhaf_4887 5210070 .. 5210090 -    -4  -3.32765   AATCTTAGACATCAA            GCAAACCA ATCAG TGCTTTGC            CCTCTAAGCAGGGGA  51 29
   Dhaf_4885 5208800 .. 5208838 - -13.9  -4.04318   CGCATAGATGACAAA   CTACGAGACACCTCTCC CTTGC GGAGAGGTGTCTCTCTG   TGCCTTATCCTATCC 100 35
   Dhaf_4883 NONE
   Dhaf_4882 5204575 .. 5204600 -  -7.7  -5.39755   TATAACGAGAAAAAA         TAGTCACGA ATAAACCA TCGTGACTA          TTTTTATACACTAAT 100 40
   Dhaf_4878 NONE
   Dhaf_4877 5201134 .. 5201157 - -14.6  -5.50499   TGACAGTGAAAAAAA          CGGCTGCGAG TACC CTCGCAACCG           TTTTTTAAGGCAAAA 100 312
   Dhaf_4876 5199606 .. 5199630 - -10.7  -5.08169   ACACATGCTAAAAAA          GACCGGAGC ACCACCA GCCCCGGTC          TTACTCTATTAATTC 100 96
   Dhaf_4872 NONE
   Dhaf_4871 NONE
   Dhaf_4870 5192225 .. 5192239 -  -2.1  -3.74519   AACACCTTCACCAAA               GTTGA TAAAC CCAAC               CCGTTTGCCTCCCAA  51 350
   Dhaf_4868 5189367 .. 5189390 -  -2.5  -3.76232   TTCTTAAATATATAA          CTCAACT TTCGCACCCC AGTTGAG           GGAATAGAGCCTTGA  52 3
   Dhaf_4867 5187159 .. 5187179 -  -3.9  -4.08394   AGACTGTTCTTAAAA            GACCCTGTT CAG AAATGGGTC            GGGGAACTCCCCGGG  60 75
   Dhaf_4865 NONE
   Dhaf_4864 NONE
   Dhaf_4863 NONE
   Dhaf_4862 5183831 .. 5183851 -  -2.4  -2.96216   CGTCAGGATTATATA            GCCAACAG TCATC CAGCCGGC            TCACCCTTGGAACGT  42 26
   Dhaf_4861 NONE
   Dhaf_4860 5181469 .. 5181485 -  -2.2  -2.96216   GCTCATCAGCACACA              CCTACG TTCTC CTTAGG              ATACAACAATCTGCC  42 21
        eutA 5179880 .. 5179911 - -13.8  -3.18366   GCTCCAAGGAACACA      GCAGGCCTGGCTC ATCAGGA GAGCCAGGCC-GC      CACGAGTCATTTTTT 100 95
   Dhaf_4858 5178726 .. 5178736 -  -5.4  -4.49556   GCTTTATTAAAGAAA                 GAAG AAG CTTC                 AGTTTATATTATCAA  70 37
   Dhaf_4857 NONE
   Dhaf_4856 NONE
   Dhaf_4855 NONE
   Dhaf_4854 5174805 .. 5174820 -  -4.6  -4.68512   CCACAACAAAAAGAA              CCGGAG AAAG CCCCAG               AAGAAACCGCCTCCG  73 367
        asnC 5170928 .. 5170954 -  -9.4  -4.17698   ATTGAGACAGATAAA         GCGCTTATAGGT TAA ACCACTAAGCGC         TCCAAATTCTGCTTT  85 94
   Dhaf_4850 5169450 .. 5169472 - -11.3  -4.95155   GGGATACCATAAAAA           GACAGCCCC TGGGG AGGGCTGTC           TCCGTATCCGTTGAT 100 74
   Dhaf_4849 NONE
   Dhaf_4848 5167182 .. 5167216 - -11.6  -4.69326   AGACCTAACACAAAA     GCAAGATGGCAATG TCTCATC CATTACCACCTTGC     TCCTAGTATACCCTA 100 76
   Dhaf_4847 NONE
        argS NONE
   Dhaf_4845 5163529 .. 5163551 -  -8.4  -5.72616   ATGCACATAAAAAAA           GCTAGTCCGC AAG ACGCACTAGC           TTTATTTTTACCATT 100 120
        pyrG 5161775 .. 5161805 -   -17  -4.08216   TTAGTTTGCCTAAAA       CGATTCCATGGCTC GGG GAGCCATGGAATTG       CCTTTGTATCACCTT 100 39
   Dhaf_4843 NONE
   Dhaf_4842 NONE
   Dhaf_4841 NONE
   Dhaf_4840 NONE
   Dhaf_4839 NONE
   Dhaf_4838 5156595 .. 5156625 -  -8.2  -4.90079   AGTCGAATAAGAAAA       GCCCTATCAGCCGA AAA TCGTCTGTCAGAGC       TTTCATCCCAAGGTG 100 72
        glpX 5155420 .. 5155438 -  -3.8  -4.17608   TCCAGGTAAAAAATA             CCTGCTGA AGC TGAACAGG             CCGCTACACAGCACC  60 29
   Dhaf_4836 5154650 .. 5154664 -    -5  -3.86524   ATATTTTTTCATAAA               GATTCC TAA AGAATC               CGATTATAGTTTTAG  59 37
        rpmE 5154272 .. 5154301 - -18.1  -3.67976   GCCAGCAACTGTAAA       GAAAAAGCAGAGC ATGC GCTCTGCTTTTTC        TCCAGCAACGACCGC 100 56
        prfA 5152876 .. 5152897 -  -2.4  -3.79419   TCTCCCCATAAAAGA           GCATCAATG ATCCG CATT-ATGC           CTCCGATTTCAGACG  51 20
   Dhaf_4832 5152032 .. 5152048 -  -3.7  -4.07568   GTTTTGTTTGCAAAA              TTCTCAC CTC GCGAAAA              CTACCCGATCTCTTC  58 12
   Dhaf_4831 NONE
   Dhaf_4830 NONE
   Dhaf_4829 5149765 .. 5149787 -  -2.6  -4.28254   CTGTAATACTTAAAA           CTTGCCTTGC CCG GCGAGGAAAA           TTTTCGCACATAATA  59 102
   Dhaf_4828 5149240 .. 5149250 -  -5.4  -2.77182   CCGTACAGGGAATTA                 GAGA GTA TCTC                 CTTTTTCAATGGCCT  50 12
   Dhaf_4827 NONE
        glyA NONE
         upp NONE
   Dhaf_4824 5146215 .. 5146253 - -12.5  -3.38991   ATCCTTTCAATAATA  TGCTG-ACAGGGCTAGGG AAAT CCCTAGCCCTTTTCTGCA   TTATATTGAGTTGGG  95 26
   Dhaf_4822 5144453 .. 5144463 -  -5.4   -2.5474   CTTTAGCTATAACAT                 GTTC GTT GAAC                 TGGCAAGCAGACTCT  48 211
   Dhaf_4801 NONE
   Dhaf_4800 5128307 .. 5128323 -  -2.3  -4.93696   TGGAAATAGTAAAAA              TTTATGC CTG GTATAAA              TAATAACGCCGTTTT  68 164
   Dhaf_4799 NONE
   Dhaf_4798 NONE
   Dhaf_4797 5126875 .. 5126909 -  -3.1  -2.79139   ATAAAATTTTAAGTA    TTATTCCTCAGTGC ATATTTCA GCACTGA-AAATAA     ACGAAGATTGGATAT  43 47
   Dhaf_4796 NONE
   Dhaf_4795 NONE
   Dhaf_4794 NONE
   Dhaf_4793 NONE
   Dhaf_4792 NONE
   Dhaf_4791 NONE
        atpC 5121087 .. 5121097 -  -6.8  -5.00388   TAAACCAAAAAGAAA                 GAGG TTG CCTC                 AGACGAGTAAAACTG  86 104
   Dhaf_4789 NONE
   Dhaf_4788 5118828 .. 5118884 - -14.6  -3.85698   TTCTTTGCGCACAAA GTCCCTCCTCCTCTCATAG-GCCAAGC CCAT GCTTAACACTATGCAAAGGGGAGGGAC AATATGTTTACTCTG 100 33
   Dhaf_4787 5117781 .. 5117825 -    -5  -5.03314   TCCATCCGGAAAAAA GCGCAAGGCTGAATATCCCT TATCC AGAGAAATTCAGCCTGAAAC GAAACGGTGGACAGA  77 83
   Dhaf_4786 5115424 .. 5115454 - -11.2   -5.0133   CATTTTTGCAAAAAA       TATGAACCCTGACA TTT TGTCAGGGTTCCTC       CAATTTTTACTTAGG 100 47
   Dhaf_4785 5112012 .. 5112044 -  -2.5  -3.12351   TGTTGTCATAGTCAA      CTCCCCTGCCGGGCC GCA GAATCAGCAGAGGAT      GAAACCTGTTATCCA  44 64
   Dhaf_4784 NONE
   Dhaf_4783 NONE
   Dhaf_4782 5109423 .. 5109444 -  -9.5  -4.67123   TCAAAATAAGCAAAA           GGAACTGTA AGAT TACAGTCCC            TTGATCTATCTTCAG 100 37
   Dhaf_4781 NONE
   Dhaf_4780 NONE
   Dhaf_4779 5104541 .. 5104572 -  -3.7  -2.72799   TCCCCACATACATCA      TCACCTCTAGG ACTATCTTTA CCCAGAGGGGA       ATGAATTAGACCAAA  44 109
   Dhaf_4778 5103882 .. 5103895 -  -6.7  -2.95073   TCTTCAACAGCAAAG               GAGAG CTTT CTCTC                AGCATAACGACTCAT  58 155
   Dhaf_4777 NONE
   Dhaf_4776 NONE
   Dhaf_4775 5101562 .. 5101575 -  -9.5  -5.40072   TCTTTTTTAAAAAAA               GCGCC TTTG GGCGC                AATTTAATGTAAAGA 100 131
   Dhaf_4774 NONE
   Dhaf_4773 5100206 .. 5100222 -  -2.1  -2.62983   CTCACCTCTACATTA              CCAGCCA AAT TGCCAGG              GCTCCCCAAGTAATC  40 1
   Dhaf_4772 NONE
   Dhaf_4771 5097643 .. 5097662 -  -7.2  -5.27335   CCTCCTAAAGAAAAA            TGATTAGC ATCT GCTAACCA             TCTTTAAAATACCTT  91 86
   Dhaf_4770 NONE
   Dhaf_4769 5093716 .. 5093738 -  -4.2  -3.08173   ATCAAGGGCAGGCAA           TATCTTGCCA GCT TGGAAAAATA           TTATATGGCCGACCT  47 388
   Dhaf_4764 5087792 .. 5087819 - -13.6  -4.55128   ATCCCTAAACGAAAA        GTACAATCTCCC CTGC GGGAGATTATAC         ATAATATACCACATT 100 155
   Dhaf_4763 5086674 .. 5086687 -  -2.3  -4.58395   TGTATTGTTGAAAAA               CTGCC TGAT GTCAG                TGACCTAAAAGCTTT  63 30
   Dhaf_4762 NONE
   Dhaf_4761 NONE
   Dhaf_4760 5083588 .. 5083634 - -18.3   -4.0162   TGCTGACAGCACAAA GCTCTCCTG-GGGAGAA-GTTCC GCT GGAACCTTCTGCCTCAGGAGAGC TTCATATTTAAGTAC 100 33
        fabZ 5081752 .. 5081796 -  -2.1  -2.82015   TGTACACCCATCATA CTCCCCCCTACCCTAAACTAT GCA AGAGTTTAGGATAGGGCAATT TGTCTTTTCGGAAAT  41 105
   Dhaf_4757 5081220 .. 5081240 - -11.1  -2.63818   AAGAAAGTAGAAGAG            GACCTGGCC AAC GGCAAGGTC            GATTTTGGGAAAAAG  72 137
   Dhaf_4755 NONE
   Dhaf_4754 NONE
   Dhaf_4753 5077707 .. 5077727 -  -9.8   -5.4477   AAAGCTGTAAAAAAA            GCATTGGA TATAC TCCAATGC            TCTCACATATATTCT 100 52
   Dhaf_4752 5076659 .. 5076687 - -18.3  -3.73816   AACATTATACTGAAA        CAAAACGCCCAGC ATT GCTAGGCGTTTTG        AGTCATCATCATTCT 100 50
   Dhaf_4751 NONE
   Dhaf_4750 NONE
   Dhaf_4749 5074728 .. 5074761 -  -6.2   -5.1287   TCCATATGCAAAAAA     GAAGAATCGTTG TAAATTATGC CAACAATTCTTC      TTTTTATTCATGTGA  87 90
   Dhaf_4748 5074044 .. 5074069 - -14.9   -3.5399   ACCATATGCACACAA         GAATGGTCTAC CCTC GTAGACCATTC          GTTTTAATCATCCTA 100 53
   Dhaf_4747 5071307 .. 5071344 - -15.1  -4.07885   TATGGTTTTCGAAAA   GTAAGGCATATTGA-GCC GAG GGCCTCATTATGCCTTAC   GTGTAACTATTCTAG 100 76
   Dhaf_4746 5070057 .. 5070077 - -13.3  -3.18728   ATTTTGAAGATTTAA            GGCTTGGCC ATG AGCCAAGCC            TCTCTTTACACTTCT 100 116
   Dhaf_4745 5069182 .. 5069192 -  -8.2  -3.05384   TGCTTGTTTAGCCAA                 GGCG TGC CGCC                 TCCTCTCTCAATTCC  65 7
   Dhaf_4744 5068180 .. 5068211 -    -8  -4.10178   GAAGAATACTATAAA      CGGAACGGCCGCC CACTCCC GGCAGCCG-TCCA      AAACTCACTATCTTT  76 60
   Dhaf_4743 5067838 .. 5067856 -  -3.8  -5.86609   GTAAAAAAAGAAAAA             CCCGAC TCCAAAC ATCGGG             CTCATACTTTATGCT  91 48
   Dhaf_4742 NONE
   Dhaf_4741 NONE
   Dhaf_4740 5064737 .. 5064757 -    -2  -3.87815   TTGCACTGTCAGAAA           GTATA-AAC TTGC GTTATATAC            TTTCCAAGCATAAGT  51 238
   Dhaf_4739 5063398 .. 5063432 - -11.6  -4.35461   GGAATATGATGAAAA     CCCCTAAACATTGC AGCTAAA ACAATGTTCAGGGG     TTTTTCTTCAGGGCT 100 53
   Dhaf_4737 5060712 .. 5060727 -  -6.1  -5.04385   GATAGTGCCAAAAAA              GCACC GTTTTT GGTGC               TTATCATGAGTATAT  84 84
   Dhaf_4736 5059017 .. 5059034 -    -7  -5.95449   AAACAAAACAAAAAA             GCCGAA CATATT TTCGGC              TTTTCGCTGTTTTTT 100 68
   Dhaf_4735 5056509 .. 5056519 -  -4.6  -4.16284   ATAGCTCTGAAGAAA                 GGGA ATA CCCC                 TTGGTTCAAGGACGA  63 355
   Dhaf_4734 5053123 .. 5053172 -   -11  -5.80817   TCCAATACAAAAAAA TTGAACTGCATTTCCCATTGTTA TTTGC CAGCAATGGGAG-TGCAGTTCAA TTCTATCTTATGGCC 100 190
   Dhaf_4730 NONE
   Dhaf_4729 5049479 .. 5049492 -  -6.7  -2.91452   ATCACTTCAACCATA               CTGTC TATC GACAG                GAGAGAAGATGGAGA  58 226
   Dhaf_4727 5046366 .. 5046406 - -14.1  -4.41353   CGATACAGACGAAAA  CAGGGCTGTGCCAAACC ATCATCA GGTTTTGCACAGCCCTT  TCCTAAGTTTATCCT 100 46
   Dhaf_4726 5046282 .. 5046293 -  -5.8  -2.64258   AGTAAGTGAATCAAG                GGGA CAGG TCCC                 GTTTTTCAACAGTTT  52 9
   Dhaf_4724 5042998 .. 5043014 -  -3.7  -3.35798   ACTCTTTATTTAGAA              TCCAACA CTA TGCTGAA              CTCCAACATTATGCT  49 61
   Dhaf_4723 NONE
   Dhaf_4722 NONE
   Dhaf_4721 NONE
   Dhaf_4720 NONE
   Dhaf_4719 5036849 .. 5036863 -    -7  -4.99568   CAATATTAAAGAAAA               CCCGGC TTC GCCGTG               CCTTAAACCCATGCT  86 211
   Dhaf_4718 NONE
   Dhaf_4717 5034641 .. 5034667 -  -2.9  -3.21684   CCAGAATCATCAAGA         GCAGAGGCT TCATAGAAC AGCCACCGC         ATTCTGAACCAATTG  44 8
   Dhaf_4716 5033131 .. 5033142 -  -4.4  -2.81162   ATTCAACAAATCAAG                GACT TTCC AGTC                 ATCTCCTGGGGCTGC  46 1
         eno 5031681 .. 5031724 -    -8  -3.70149   CCTATACCAGGTAAA CCGCCACTTCTCCCCTGTTT TAAG ACACAGAGAGGGTGTGGCGG TCATTCCCTATGGTT  70 118
   Dhaf_4714 5031376 .. 5031388 -  -3.3  -2.76093   AGCTGAATAAAGGGA                GCAGG GGA CCTGG                CCTTATTTCATGAGC  43 28
        hppA 5029109 .. 5029136 - -16.4   -5.0538   GCTCAGTGCAAAAAA        GAAGCAGGGGAA CTTA CTCCCCTGCTTC         CCAGCCTAAGTCGTT 100 41
        smpB 5028436 .. 5028475 - -14.4  -4.17425   AGAAGGATGGCAAAA  GACTCCCCTATGCAGTTT CCTC AAACTGCACGGAGGAGCC   TTTCTTTATCAGCTC 100 39
   Dhaf_4710 5026958 .. 5026975 -  -4.1  -4.56597   CCGCCGCTGTAAAAA             GC-ACCGA AAA TCGGCAGC             TCCGGCTCGATGCTC  66 58
   Dhaf_4709 5026279 .. 5026314 - -20.7   -5.1356   GCCCAGTAAGAAAAA    CCAAAGGATACCCCT GGTTAA AGGGGTATCCTTTGG     TTGGCTTAACTCCTC 100 77
   Dhaf_4706 5024609 .. 5024645 - -18.1  -4.77036   CCTTACTATGAAAAA    TGGCCCATGATCCGCAT CGC ATTCGGATCATGGGCCT    TTCCTTCTCTCGCCA 100 56
   Dhaf_4705 NONE
   Dhaf_4704 5023356 .. 5023386 -  -6.9   -5.0916   GGGCGAACATAAAAA       GCGAGTCCG TTGGCCTAAAACG CGGACTCGC       TTTTGAATAGACTAT  88 114
   Dhaf_4701 5019626 .. 5019638 -  -3.4  -2.80464   TTACCAATGCCAAAC                GATG AGGGG CATC                TTAAGATGCTTAGGG  43 35
   Dhaf_4700 5018208 .. 5018238 - -10.5  -3.97834   TAAGCTTATGAGAAA       CCCCAGCAGTA GAAAAGTAA TACCGCTGGGG       TTGTCGCATACACGG  89 138
   Dhaf_4699 5015303 .. 5015320 -    -2  -3.48607   ATATCATAATAAAAT             CCTAAT TGTCCC ATCAGG              TGTCACCTCCTAAAA  47 35
   Dhaf_4698 NONE
   Dhaf_4697 5013815 .. 5013863 - -10.4  -4.63218   TTTTCGTTAATAAAA TAAGCCTGCCCCCCAACGTTTAT ACCT ATAAACGTCGGCGG-CAGGCCCC TTTGGCACTTATTGC 100 63
   Dhaf_4696 NONE
   Dhaf_4695 NONE
   Dhaf_4694 5009658 .. 5009679 -  -8.8  -4.59773   GTTTATTGCCAAAAA           GGAGTATC TCTTCC GATACTCC            TTTTGGCTCTTACTC 100 65
   Dhaf_4693 5007436 .. 5007449 -  -3.1  -4.12198   CATAACGCTTGAAAA               GAATC TCCA GATCC                CCCAGCTTGATGCTT  58 490
   Dhaf_4691 5006278 .. 5006304 - -15.2  -4.39568   ACGCAGACAGGAAAA         GGGACCCCTTCC TTT GGAAAGGATCCC         TTTGCTGTTTGATTT 100 63
   Dhaf_4690 NONE
   Dhaf_4689 NONE
   Dhaf_4688 5001988 .. 5002009 -  -8.8  -4.62069   CTCTGATTCTAAAAA           GGAGTATC TTGGCG GATACTCC            TTTTGGGTGCTCATC 100 60
   Dhaf_4687 5000959 .. 5000986 -  -7.7   -4.4768   GATTAAGACAAGAAA        GGGAGCCCTTC ATTTTG GAAAGGATCCC         TTCACTTCATTTCTT  82 170
   Dhaf_4686 5000474 .. 5000513 - -13.7  -2.87564   TTATTTCCGGAGATA  GGAAAAGGGACCCCTTC ATTTTG GAAAGGATCCCTTGTCC   AGCCACTTTTTAGCG  93 111
   Dhaf_4685 NONE
   Dhaf_4684 4999367 .. 4999382 - -10.4  -5.24799   GTACAAACAGAAAAA              GGAGGC ATTT GCCTCC               TTAAACTTCATTTTG 100 43
   Dhaf_4682 4997040 .. 4997065 -  -9.7   -2.8937   ACATACGGCGAGATA         GGCACCATCCC TTGC GGGATAACGCC          TATCTCTTGTTTTTA  72 42
   Dhaf_4681 4995269 .. 4995279 -    -4  -3.14211   ATTTTTTTGGACCAA                 TGAA TCA TTCA                 TAGCTTTTTGCACAA  49 89
   Dhaf_4680 NONE
   Dhaf_4679 4992984 .. 4992997 -  -3.9  -3.99461   AGGAAGGCAAAAAGA               TCAAA GCTC TTTGA                AATAGGTTTCCTTCA  58 280
   Dhaf_4670 4981960 .. 4981972 -  -4.7   -4.4648   ATTTTTATGAGAAAA                CCTGG GAA CCCGG                GGAAACGCCGCCCTT  67 277
   Dhaf_4667 4979673 .. 4979702 -  -3.6  -5.56112   ATAAAAAGCAAAAAA       TGCCACATC-ACC TATCT GGTTGAAATGGCA       TTTTTTGTAGACTTA  84 72
   Dhaf_4666 4977800 .. 4977830 - -12.5  -2.90283   TACCCAAATCAAGGA       TGCCCTCCCCCGC ACCAA GCGAGAGAGGGCT       TTGCTATGTCTATAA  93 501
   Dhaf_4665 4976912 .. 4976923 -  -4.4  -4.75776   AACTCAACTCAAAAA                CCTT CTCC AAGG                 CCAACACCACCTACG  71 108
   Dhaf_4664 4975259 .. 4975269 -  -6.8   -5.0133   TAGTTTTTTAAAAAA                 CGGA AAT TCCG                 AAATTCTGTTAGTCT  86 301
   Dhaf_4662 NONE
   Dhaf_4661 4970897 .. 4970908 -  -2.2  -3.59979   TTCGGGTATGGCAAA                GCAA ACGT CTGC                 TATTTGGCATATGTT  49 302
   Dhaf_4660 NONE
   Dhaf_4659 4969657 .. 4969671 -    -5  -3.43619   ACTAAACTCAATCAA               CCATCA GTT TGATGA               TTTCCGTCACTTACC  55 179
   Dhaf_4658 4967951 .. 4968002 - -27.8  -3.36968   TATTGAATTTTATAA TGAGCGTTCATAGGCATTGGGCTAT AGA ACA-CCCAATGCCTATGAACGCTCA TTTTATGACAATCAG 100 325
   Dhaf_4657 4965743 .. 4965760 -  -2.1  -3.43446   CCACATCGAATAATA             TGATAGAT TAT ATCT-TCA             ATTCCTGCGTATCCA  47 343
   Dhaf_4656 4964300 .. 4964337 -  -3.3  -4.09739   TCAATGCCCTCAAAA   GTCTGATACCATGCGGA TTTG CCCGCATGGTATCTTTT    TACTGCCTAAAATTT  58 117
   Dhaf_4655 NONE
   Dhaf_4654 4962494 .. 4962513 -  -2.8  -2.72991   TCATAGGTTTAACCA            TCCAAGAA TAGT TCCTTGGC             TTCTTTTCTTTGCCG  41 49
   Dhaf_4653 4961541 .. 4961566 - -14.8  -3.68798   CCCCAAAATAACTAA         TGCCATGCGG GTTTGA CCGCATGGCA          TCTTTTATTACCTAA 100 239
   Dhaf_4647 4955409 .. 4955429 -  -6.1  -3.83347   ATATTCCAAATATAA            CAAGAGCGT TTT ATGCCCTTG            CCTCACTTTCCATTC  65 436
   Dhaf_4645 4953636 .. 4953649 -  -3.8  -3.10164   GCACTCAGGAGCGAA               TCCC GGACAA GGGA                ATCCGAACCCCGAAA  48 1
   Dhaf_4644 4952877 .. 4952894 -  -2.7  -5.71638   GAAGAATTAAAAAAA             TTGCACC CTAA AGTACAA              TTCGATATTTGTTGA  84 15
   Dhaf_4643 4951598 .. 4951618 -  -2.4  -3.77831   TGATTAATATTTAAA            TCCAACCG GTTTT CGGGAGGA            AGGAGAAGAAGGAGT  51 123
   Dhaf_4639 4946738 .. 4946762 - -12.9  -4.03219   ACTGCATAACAACAA          TACCCCCAAGC TCA GCTCGGAGGTA          TCTTTAGGTTTAGCC 100 47
   Dhaf_4638 4944951 .. 4944985 - -14.4  -3.85698   TTCTTGCCGGATAAA     TAATAAACCCACCGGC AAA ACCGGAGGGTCTATTA     TGCAAATAAAGTTTA 100 49
   Dhaf_4636 4942262 .. 4942306 - -16.6  -3.29144   GTATGCCGCTCATAA GGGAGAGCCGCCGGATTACTT ATTA AAGTAA-CTGGCGGCTCTCCT TTGCGTATTTCTGCT 100 82
   Dhaf_4635 4941122 .. 4941155 - -11.1  -5.68039   AAAGGTAGAAAAAAA     GCTTAAACACCTTGC AAAT ACAAGGGGTTCAAGC      TTTTAGAGTTTAAAT 100 93
   Dhaf_4634 4939093 .. 4939143 - -11.3  -2.62184   GCTGGGGCGATATCA GCCTGTCAAGGGCAGGAACTTCATC CCG GCTAACGC-CCT-CCCTTGACAGGC ACCTTCAAATTAACA  80 65
   Dhaf_4633 4937787 .. 4937799 -  -5.5  -2.77283   TCATTAATAAAGGTA                GAAGG GAT CCTCC                ATTGAATTCAAGCCA  50 51
   Dhaf_4632 NONE
   Dhaf_4631 4935166 .. 4935181 -    -4  -4.50218   AATGACCAAAAACAA              GACCAT CATT ATGATC               GCCCACCGGCTGAAA  68 227
   Dhaf_4624 NONE
        gatA NONE
        gatB 4923174 .. 4923193 - -10.8  -5.79595   TTTTAAAATAAAAAA            CATCCACT TGGC AGTGGATG             TCGTTAGGGATTATT 100 53
   Dhaf_4621 NONE
   Dhaf_4620 NONE
   Dhaf_4619 4919146 .. 4919156 -  -3.2  -3.22135   TACATAACCAAGACA                 CCTC TTT GAAG                 GGATTATTTGCCGGC  46 29
   Dhaf_4618 4918160 .. 4918195 - -10.5  -2.95113   GCCCAAAATGCAAAG    GACCTCCTGC-TCAGG TCTAT CCAAAAGCAGGAGGTC    TTGCCCGTCATAACC  76 33
   Dhaf_4617 NONE
   Dhaf_4616 4916292 .. 4916328 -  -2.2  -3.56325   GCGGGATAACCAGAA    GAGCCTTAAGGAAAAC ATCAA ACTGACCTTAGGGCTC    TTTTCCTTGGAAATC  47 47
   Dhaf_4615 4915036 .. 4915054 -  -4.6  -2.55668   TATGGGTATACTAAG             TATAAAGC TTT GCTTTTTA             ATTGTCAATGATTCC  47 143
   Dhaf_4614 NONE
   Dhaf_4613 4914213 .. 4914243 - -14.2  -5.14985   CCAAACATACAAAAA       GCTCCATAAAAATC ATT GATTCTTACGGAGC       CGCTCCTAAATTATT 100 31
   Dhaf_4612 4913074 .. 4913110 -  -3.1  -2.72434   ATTTTAATTAAATAT   GTTCATTCGGACATGA TTTATT TC-TGTCCGAATTTAC    CTTCCCGGTAGGCTC  42 6
   Dhaf_4611 NONE
   Dhaf_4610 4911347 .. 4911371 -   -10  -3.70676   GATAGTGAAAAGCAA          GCCCCCGAAG ACAAG CTTCGAAGGC          TTTTATACTAAACTT  80 51
   Dhaf_4609 4910697 .. 4910715 -   -11  -5.09426   CCTAAGGTTAAAAAA             GAGCCGTC ATA AACGGCTC             CAGGCGTAAACAATG 100 55
   Dhaf_4608 4908408 .. 4908443 - -16.4  -5.80364   ATGCCAATAAAAAAA    GGTACAAAAACCGGTT TTTC AAGCGGTTTTTGTACC     TTTTTGTTCTTATTC 100 103
   Dhaf_4607 NONE
   Dhaf_4606 NONE
   Dhaf_4605 NONE
   Dhaf_4604 NONE
   Dhaf_4603 NONE
   Dhaf_4602 NONE
   Dhaf_4601 NONE
   Dhaf_4600 4899561 .. 4899578 -  -3.5  -3.53012   TTTCCGTTTGGCAAA             CCTAACTT CTG AAGTT-GG             AATCGTGTCTGACTT  51 123
   Dhaf_4599 4897982 .. 4897999 -  -3.4  -3.04144   GCCGGACCGGCAATA             CCTGAT GCAAAA ACCAGG              TATTGCCGGACTTTA  44 77
   Dhaf_4598 NONE
   Dhaf_4597 NONE
   Dhaf_4596 4893881 .. 4893891 -  -3.2  -3.92746   CCTACCGGAAAAAGA                 GCTA GAG CAGC                 AAAGCGATGCGGTTA  56 16
   Dhaf_4595 NONE
   Dhaf_4594 4891313 .. 4891345 - -14.3  -5.21709   TCTGATACTAAAAAA      TTAACAGCCGGTCCA TTA TGAACGGGCTGTTAA      TTTTTTAGTATTCGT 100 114
   Dhaf_4593 NONE
   Dhaf_4592 NONE
   Dhaf_4591 NONE
   Dhaf_4590 4886899 .. 4886910 -  -2.2  -4.42238   CGACTCTAACCAAAA                TGGC TCTA ACCA                 AATCAGCTTCAATCA  60 59
   Dhaf_4589 4885492 .. 4885510 - -11.6  -2.78679   CCTCCTTATCTAAAT             CCGCAGGC TAA GCCGGCGG             TGTTCTAATACTGTC  81 162
   Dhaf_4588 NONE
   Dhaf_4587 4882984 .. 4883017 - -13.3  -5.37345   TGCAACCATAAAAAA     TCAAGCTTTCAGCTT CACA AGGCTGAAAGCCTGA      TTCCAGGGTATTCAG 100 52
   Dhaf_4586 4882016 .. 4882063 -  -7.7   -5.0916   TTGCCAAGAGAAAAA GGAACCGACAGCTTTTGAACC GGAATA GGTTCGCGAGGTGTCAGTTCC TTTTTCTTTTTTAGT  95 88
   Dhaf_4585 NONE
   Dhaf_4584 NONE
   Dhaf_4583 4879677 .. 4879693 -    -5   -3.1319   TGAAAACCTATGGAA              CGCTGC GGAAG GCTGCG              GTATTGCTGCACCTA  51 56
   Dhaf_4582 4878605 .. 4878642 - -13.5   -3.7511   TTTTTCATAACAGAA   GACGGCTCTC-CCCGGCT AAA AGCAGGATGAGAACCGTC   TTACTTCTTATTATC 100 75
   Dhaf_4581 4877242 .. 4877252 -  -4.6  -2.57344   GATCCCGTGTATAAT                 CCGG CAT CCGA                 CATCCTTCTTTCTAT  48 56
   Dhaf_4580 4876364 .. 4876390 - -14.5  -5.28281   AGAAAATAAATAAAA         CCTCTCATCCC AATCA GGGACGAGAGG         TTATTCCCGCGTTGC 100 281
   Dhaf_4579 4875031 .. 4875043 -  -7.7  -3.07816   TTGTTATCTATTGAA                TGCAG CTC CTGCA                ACGGCAGGGATTGCC  63 44
   Dhaf_4578 4873715 .. 4873768 - -10.4  -3.40867   TCATGGATGAATCAA GGGGACAGGTACCTTGATTCA-TTG GGGTG CAGGTGAATAATGGGACCTGTCCCC TTGATTCACTGCTAT  80 37
   Dhaf_4577 4872410 .. 4872426 - -13.7  -3.81626   GAAGAAATGCAAGAA              GGGGTGC ACT GCACCCC              TTTTTTCTTGCTTTC 100 48
   Dhaf_4576 NONE
   Dhaf_4575 4870774 .. 4870792 -  -3.2  -2.71744   GATTATTATACACTA             TTTTAGAA TTA TTCTAAAG             TTTTGATTTTCCACT  42 178
   Dhaf_4574 NONE
   Dhaf_4573 NONE
   Dhaf_4572 4866866 .. 4866906 - -17.1  -4.74013   TGGAAATACAGAAAA  GCTGTAGTCAGAAGAAATG TAT CCTTTCTTTTGACTACAGC  CTTGAAGATTCCATG 100 43
   Dhaf_4571 NONE
   Dhaf_4570 NONE
   Dhaf_4569 NONE
   Dhaf_4568 4861883 .. 4861918 - -16.4   -4.7657   TAAAAACCGCAAAAA    GATGGAGCTATAAGTC TTGG GACTCATAACTCCATC     TTATCTTAAAAGAAA 100 74
   Dhaf_4567 4861094 .. 4861124 -  -5.5  -5.77988   ATATAGATAAAAAAA      TAGGGAACTGTCCC CAAA AGGAT-GTTCCCTA       TGCCCGCTTGGCTAA  95 71
   Dhaf_4566 4859525 .. 4859550 - -14.9  -5.46698   TTTAAAACCAAAAAA         GCTTGAGATTC AAAT GAATCTCAAGC          AAGATCCTCCAGCCC 100 59
   Dhaf_4565 4856684 .. 4856718 -  -7.8   -3.6715   TGAGTGAATTCTAAA     CGCCCTAGTCCCAC TTTTATG GTGAGGTTAGGGCG     TTGCTTGGTCGATGG  70 152
   Dhaf_4564 4855133 .. 4855155 -  -5.5  -3.61468   TTTTAATTAAAGTAA           GCCTCCCCC GCGCA AGAGAAGGC           TTTGCTATATCTACC  59 89
   Dhaf_4563 NONE
   Dhaf_4562 4854236 .. 4854265 - -12.2  -3.76373   GGCCTAATAGTTAAA       GCCAGCCCCCTT AGCTTG AAGAGGACTGGC        TTTTTTGTTGTGCTG 100 107
   Dhaf_4560 4851870 .. 4851927 -  -5.8  -4.77157   GGAAGTCAGTAAAAA CCATAGGTATAATCAGCCTCAGCA AGAAAAACAA TGCCAAGACCGATTATACCTTTAA ATGCACTGTATTTGT  78 79
   Dhaf_4559 4851120 .. 4851134 -  -2.8  -2.64155   TTTTCTGGAAATTCA               CCTTGA TCA TCAAGC               TATCCTCCTGTCAGG  41 20
   Dhaf_4558 4850396 .. 4850440 - -33.2  -5.32608   AAAAAAGTGAAAAAA GGGGACAGGTCCCGCTTTTC GTTCT GAAAAGCGGGACCTGTCCCC TTTTTTCATCCTTTT 100 46
   Dhaf_4557 NONE
   Dhaf_4556 NONE
   Dhaf_4555 4847606 .. 4847616 -  -8.2  -3.33744   GGCTGTTGGAAAAAG                 GGGC CGA GCCC                 GCGCTATCCGGCTGA  69 109
   Dhaf_4554 4846170 .. 4846203 - -18.3  -5.01811   GTACCAAAGCAAAAA     CGCCTGCCCCTAAGT CAAA ACTTAAGGACAGGCG      TATAACCTGCGGTAC 100 315
   Dhaf_4553 4845052 .. 4845063 -  -5.8  -2.60075   GTTGTGTGAACCAAG                GGGA CAGG TCCC                 GTTTTATTCGGTAAA  52 29
   Dhaf_4552 NONE
   Dhaf_4551 4843202 .. 4843219 -  -2.6  -3.79203   AGATAAAAGGGTAAA             CCGGCA CATTAT TGCAGG              ATAGACTTGTTTTGC  52 89
   Dhaf_4550 4842247 .. 4842286 - -19.4  -3.56092   TCATGAGTTTTCAAA  GGGTAGGGAGCGCCTC TATGCCAG GAGGCGTTCCCTACCC   TTCCCTTGGTTCCTG 100 41
   Dhaf_4549 NONE
   Dhaf_4548 4840728 .. 4840750 - -12.1  -3.18115   TCCTGATAAAAGAAT           GCCAGCAAA AATTA TTTGCTGGC           CTGAACATTCTTATT  86 53
   Dhaf_4547 4839702 .. 4839730 - -13.2  -4.48713   TTGATGAATAATAAA        GGGACTAAACCC ATTCA GGGTCCAGTCCC        TCCAAAAGCTTATAA 100 61
   Dhaf_4545 4838668 .. 4838681 -  -2.3   -2.8055   GAGCCTAGAACATCA               TTGCC GTCA GGCTA                GGCCGCTTCTTCAAT  41 23
   Dhaf_4544 NONE
   Dhaf_4543 NONE
   Dhaf_4542 NONE
   Dhaf_4541 NONE
   Dhaf_4540 4830835 .. 4830878 - -31.4  -3.93369   TCAAGGTGAATCAAA GGGACAGGTCCCGTTTTTCA TTTT TGAAAAACGGGACCTGTCCC TTTGATTCACCCCTT 100 44
   Dhaf_4539 4828954 .. 4828998 - -20.3  -5.24129   GCTTCCTACAAAAAA CAAGGACAGGTACCATTTTTC TTT GAAAAATGGTACCTGTCCCCT TGATTCGATTATGCA 100 34
   Dhaf_4538 4828092 .. 4828135 - -18.4  -5.48825   GATCAGGCAAAAAAA GCGGATGAAG-CATGTGAACA CGC CGTACACATGGCTTCATCCGC TTTTTCTTTTATGCC 100 34
   Dhaf_4535 NONE
   Dhaf_4534 NONE
   Dhaf_4533 NONE
   Dhaf_4532 NONE
   Dhaf_4531 4818448 .. 4818466 - -10.3  -2.88544   TCTGAGTGGGACAGA             GGGACAG GTCCT CTGTCCC             AATTTCTGTCCCCAT  75 167
   Dhaf_4530 4816552 .. 4816583 -  -7.4  -3.28712   GGTTTGGGTGGACAA      CGAGCTTAGG TTTTGGCACATT CCTAAGCTCG       CTTCCATCTGCGGGT  64 83
   Dhaf_4529 4815081 .. 4815095 -  -5.6  -3.13164   CTTTGAACGACTTAA               CGACAC TAT GCGCCG               GCTCCATCCATTATA  55 61
   Dhaf_4528 4812847 .. 4812880 -  -8.1  -3.06796   TGCGACGGCATTTAA     GGTGAGACGGTCATG AATC CATGACCGTCTCTTT      TTATTTAGCCTGAAC  62 113
   Dhaf_4526 4811576 .. 4811597 -  -7.3  -4.77036   TCGGAGTATGAAAAA           GACCTTCTCC AAA GGAGA-GGCC           TTAGTTTTTTACTAA  85 37
   Dhaf_4525 4810236 .. 4810247 -  -2.2  -2.51547   TGCTCAGACCAATAG                CTGA CTTG CCAG                 ATAGATAGCCATACC  39 2
   Dhaf_4524 4808830 .. 4808841 -  -5.8  -3.29511   TCCATCTGTTCAGAA                CCGA CTGT TCGG                 TCAGTCTATATTATT  57 94
   Dhaf_4523 NONE
   Dhaf_4522 NONE
   Dhaf_4521 NONE
   Dhaf_4520 4803534 .. 4803566 - -20.8  -3.55622   CTTAACTTGGTCAAA      TGAAAGAGGAGGGC GCTTT GCCCTCCTCTTTCA      TTTAATAACTCAGGT 100 89
   Dhaf_4518 NONE
   Dhaf_4517 4799633 .. 4799662 - -13.7  -3.72051   GCCAATAATGCGAAA       GAGCAGTGCAAAC CGAA GTTTGCACTGCTT        AAGTCCCAACTTTTT 100 98
   Dhaf_4516 NONE
   Dhaf_4515 4797808 .. 4797838 - -17.8   -5.0133   GAGTTGGGTAAAAAA       GTGAAGCAAGAGAA TAG TTCCCTTGCTTCAC       AATGGTTCTTATTTT 100 34
   Dhaf_4514 NONE
   Dhaf_4513 4796633 .. 4796652 -  -2.2  -4.61482   TTCGCGAAAAAAGAA            CAGCA-AAT TCT ATCGTGCTG            GCAGTATGGGATTTT  63 40
   Dhaf_4512 NONE
   Dhaf_4511 4795222 .. 4795257 -   -20  -3.53012   CTGTCCCGTCTTAAA    GAAACAAGACCTGACC CGTC GGTCAGATCTTGTTTC     TTTAAAGCGCGCATT 100 297
   Dhaf_4510 NONE
   Dhaf_4509 4793999 .. 4794012 -  -4.5  -3.14931   TTCAGCCGGGACCAA               GGAAG GCTG CTCCC                TGATCCCAGTCGGTT  51 44
   Dhaf_4508 4793047 .. 4793093 - -13.9  -4.02535   TCATAACGAATGAAA CAGGCCCAGCCATTGATTCCTA AATT TAGAAACCGACGGCTGGGC-TG AACGCCTAGCTTATA 100 66
   Dhaf_4507 4792486 .. 4792522 - -14.6  -4.08557   CTGCGGAAATAATAA    GGCCTGGTTCTGTTCT GCCGA AGAACAAAACCAGGCG    ATTCGTGGCGTGCTT 100 64
   Dhaf_4506 4790489 .. 4790501 -  -3.4  -2.53822   GCCATTTTACAACAT                GACA TACCT TGTC                TGCGGGGGCGGGAAA  42 57
   Dhaf_4505 NONE
   Dhaf_4504 4787103 .. 4787122 - -12.2  -4.56775   AGTTTCTTTTAAAAA            GGGGAATC TTGC GATTCCCC             TTAAGCTTTAGGACT 100 82
   Dhaf_4503 4785861 .. 4785879 -  -4.5  -4.11371   CAAGAGTCTTTAAAA            GCAGGCCC AGCT GGACC-GC             TGAATGCAGCTTCAC  63 93
   Dhaf_4502 4784805 .. 4784841 -    -6  -5.31275   TTGGAGTACAAAAAA   GTCAAGAGACG-ACTCA ACTA CAAGTACATCCCTTGAC    TTTTTTATCGATATA  86 45
   Dhaf_4501 4783228 .. 4783264 -  -9.6  -5.00851   ATTAAGCAAAGAAAA    GCGACCTTATTCTACT TTTGC AGTACAATAAGGTCGT    TCTTTATTATCGTAC 100 61
   Dhaf_4490 4772014 .. 4772028 -   -10  -2.65774   TATACCGATGAGAAG               GGTGTG GAG CACACC               GTATTCTTCGATGAT  66 239
   Dhaf_4487 NONE
   Dhaf_4486 NONE
   Dhaf_4485 4767445 .. 4767478 - -14.7  -3.43218   CACAATTAACATGAA     GAAACCTGGCCACTC TCAT GAGCGACCAGATTTC      TCTAACTTTATCGAG 100 125
   Dhaf_4484 4765281 .. 4765293 - -10.5  -3.55563   ATCCCACCCCTTAAA                GGGGG CGT CCCCC                CTGAGAGGCTTACGC  80 294
   Dhaf_4483 4761569 .. 4761602 - -16.1  -3.21747   TTAGGTTATTACGAA     GAAACCTGGCCGCTC ATAA AAGAGGCCAGGTTTC      TCTGGATTATCGAAT 100 100
   Dhaf_4482 NONE
   Dhaf_4481 NONE
   Dhaf_4480 NONE
   Dhaf_4479 NONE
   Dhaf_4478 4752640 .. 4752678 - -18.3  -5.36441   TTGCGACATAAAAAA  GGAGCCCTAATCCCAGCA TTCA TGC-GGGTTTAGGGCTCC   TCTTTTGTCTATTAA 100 81
   Dhaf_4475 NONE
   Dhaf_4474 NONE
   Dhaf_4473 NONE
   Dhaf_4472 NONE
   Dhaf_4471 NONE
   Dhaf_4470 4744301 .. 4744327 -  -5.9  -2.76162   GAGTGTATCTCAAAC        CTGCGCTGGTGCA AGT CGC-CCA-CGCAG        CCGTGAAAGCGACCG  53 271
   Dhaf_4468 4741692 .. 4741703 -  -2.2  -4.72846   GCAGAGAGTTAAAAA                TAGC GATA GCCA                 CTCTTAGATGCTGTG  63 356
   Dhaf_4467 NONE
   Dhaf_4466 NONE
   Dhaf_4465 NONE
   Dhaf_4464 NONE
   Dhaf_4463 NONE
   Dhaf_4462 4732476 .. 4732490 -  -4.2  -3.45023   TTAGCATGAGGATAA               CGCCCT TTT AAGACG               GGGAGAAATACTTTG  52 175
   Dhaf_4460 4729692 .. 4729726 -  -2.3  -4.36863   TGAATACAAAAAATA    TATCAAT-GTGACTGC CGAA GCAGCAACGATTAATA     CCGATAAATTGAAGC  61 456
   Dhaf_4457 4726733 .. 4726760 -  -3.4  -2.82936   AGGTAAACGTCAAAT        CAGCCGGCATCTT GAC AAG-TGTCGGTTG        TTTCCAGGAGATTAT  43 37
   Dhaf_4456 4726117 .. 4726138 - -12.3  -3.88464   GGAAAAATAGTCAAA           CCCAACCAC ATTA GTGGCTGGG            TAATTTTTGGTGCAA 100 58
   Dhaf_4455 4725102 .. 4725119 -  -9.9  -3.36749   TATCTCCAAGATCAA             TCCCCAT AGCC ATGGGGA              TGTTTTTGATGCCAC  76 4
   Dhaf_4454 NONE
   Dhaf_4453 4724275 .. 4724288 -  -5.3  -3.41051   GGAGGCCTATGACAA               CTATG CTAA CATAG                GGGGGTTATCATTCT  57 133
   Dhaf_4452 4723233 .. 4723243 -  -3.2  -4.06964   AGAGATAGAAGTAAA                 TGCC CCG AGCA                 GGACCGGGTAACCAT  56 501
   Dhaf_4450 4721178 .. 4721223 - -19.3  -4.88736   GACCACTTACAAAAA TCTGCCCATCTAAAATCGGAC ACGA ATCCGATTTTGGATGGGCAAA CTAAGGGCGGCAAGC 100 41
   Dhaf_4449 4718688 .. 4718712 -  -8.1  -2.62184   GTCTTTGTTATATTA          TTATGTTATAC AGT ATATAACATAA          ATTTGATGAGGTGGA  60 410
   Dhaf_4444 4712952 .. 4712982 - -10.6  -4.00348   TCTTAATGAACGAAA       GGACAATTTGGA AGTTGAG TCCAAATTGCCC       TTTTTAATAAGCAGC  89 57
   Dhaf_4443 NONE
   Dhaf_4442 4709695 .. 4709719 -  -8.6   -4.3208   GTCCATAAGCCAAAA          CCTCACGTTT ATAAA AAGCGTGAGG          TTTTCTAGTATCCTG  82 54
   Dhaf_4440 NONE
   Dhaf_4439 NONE
   Dhaf_4438 4706969 .. 4706995 -  -2.4  -5.11836   AGAGTTAAAAGAAAA        GAATCCGCTACC TGAAT GGT--CGGATTC        TTTTTTAATCTTATT  71 74
   Dhaf_4433 NONE
   Dhaf_4432 NONE
   Dhaf_4431 NONE
   Dhaf_4430 4698715 .. 4698741 - -10.9  -5.21506   ATAATAACACAAAAA         CCCCCAAAGCA CACGC TGCTTTGGGGT         GAGTAACCCAGCCCT 100 477
   Dhaf_4429 4697721 .. 4697742 - -10.1  -4.33928   GACTTTAAAGAGAAA           TCCCGAGGA TTAA CCCCCGGGA            CCCAGTCTATCCATT  93 61
   Dhaf_4428 NONE
   Dhaf_4427 NONE
   Dhaf_4426 4694288 .. 4694346 - -12.7  -4.41817   CAAAACAACCCAAAA TAGTACAGGGGCTGTCCCCT-TACTTTT TGCC AAAAGTATAGGAAACAGCCCCCATTCTC ATCAATCACATATTA 100 38
   Dhaf_4425 4693260 .. 4693296 -    -9  -3.02745   GTTAGGTAGAAATGA   TATTTGAATCA-AGGGA CCTG TCCCTCTGATTCAATTA    GATGCTAAAGGTATG  68 23
   Dhaf_4424 4692099 .. 4692122 -   -11  -4.68209   ATGCCAATAAAGAAA          GGAGCTCAGC TATA ACCGAGCTCC           CTCTGACCCCAAAAC 100 89
   Dhaf_4419 NONE
   Dhaf_4418 NONE
   Dhaf_4417 4687498 .. 4687510 -  -2.7  -3.22924   TGGAAATGATCAAGA                TCGAT AAA ATCAA                GAGGTAGGTACTTCG  44 140
   Dhaf_4416 4686361 .. 4686381 - -10.4  -4.07687   ACCTCCTTTTTAAAA            GGGGCGAA TAGTC CTCGCCCC            TACAACAAATCAGTT  91 65
   Dhaf_4415 NONE
   Dhaf_4414 4684296 .. 4684330 -  -2.3  -4.77165   CTTCCCACAATAAAA     GGCCAATAAAC GATTTACTTTTAG GTTTATTGACC     CTTCTATTCATATCA  66 77
   Dhaf_4413 NONE
   Dhaf_4412 4682398 .. 4682413 -  -3.2  -2.88822   TCTCTCATATAATTA              CTACCC ATGA GGGCAA               AATGAGAGTATAGGG  43 10
   Dhaf_4411 4681555 .. 4681607 - -38.3  -3.09516   TTCTCCACTAGTGAA TCAAGGGGACAGGTACCGTTTTTCA TAT TGAAAAACGGTACCTGTCCCCTTGA TTCACCTAATCGAGT 100 31
   Dhaf_4409 4679958 .. 4680005 - -28.8  -5.08824   TCTCTAGTGAAAAAA TGGGGACAGGTACCGTTTTTCA ATTA TGAAAAGCGGTACCTGTCCCCA TTTTTCACCCCTGTC 100 49
   Dhaf_4407 4678046 .. 4678073 - -12.1  -3.60792   ATGACCTACATAGAA        TCATCCAGGCC AATAAA AGCCTGGATGA         TTAAAATAATTTCAC  93 159
   Dhaf_4406 4677351 .. 4677365 -  -4.2  -2.68532   TCCAAAGCTACATGA               GTCGGA GTA TTCGAC               ACCTCGTCATAAAAA  45 45
   Dhaf_4405 4676693 .. 4676709 -  -8.7  -5.65927   TAGTCAAACAAAAAA              CGAGGAA TAG CTCCTCG              CTTTCACTTCATTTA 100 38
   Dhaf_4404 NONE
   Dhaf_4403 NONE
   Dhaf_4402 NONE
   Dhaf_4401 NONE
   Dhaf_4400 NONE
   Dhaf_4399 4670027 .. 4670043 -  -2.9  -3.60395   TCAGAGAAGAATCAA              TCGCGGA GCA TCTGCAA              AAAGGATTCCAGCCT  50 5
   Dhaf_4398 NONE
   Dhaf_4397 NONE
   Dhaf_4396 4667642 .. 4667695 - -20.6  -3.61715   GACGCCGGCCAAGAA TATGGTTAAGCAGAAGGCCCCGGGA ACGAA TCCCGGGGCCTTCTGCTTAAA-ATG AACTTACTCTTGCCG 100 29
   Dhaf_4393 NONE
   Dhaf_4392 4662442 .. 4662470 -  -5.3  -4.82901   CTTTGCCCATAAAAA        CAGGACAAGGT TTGCCGT ACCTTGCCCCA        CTGATTTTAAGTCAA  75 32
   Dhaf_4391 4661639 .. 4661649 -    -4  -3.08046   CGGGCATTTGAAAAG                 CAAA GTT TTTG                 GGTTAAGAACATTTG  49 28
   Dhaf_4390 NONE
   Dhaf_4389 NONE
   Dhaf_4388 4658783 .. 4658804 - -13.1  -5.63236   ACTTAAAAAGAAAAA           CGTCAGGAA GCTA TTCCTGACG            CTGCTTTGTCGTAAT 100 407
   Dhaf_4387 4657405 .. 4657424 - -12.2   -4.9725   ATTTTCATACAAAAA            GCACTGGA TTCC TCCAGTGC             TGAATACTCATATGG 100 366
   Dhaf_4386 4656466 .. 4656486 -  -2.7  -3.70919   CTTAAACGTCAAGAA            TAAAATTTT CTA AACATTTTA            ACATTCTACCGTTTA  50 31
   Dhaf_4385 4655582 .. 4655605 -  -7.5  -5.93809   TCTTCACAAAAAAAA          CGAGA-CAGG CCTAT CCTGATCTCG          TTTTTGTCATCTGAC 100 49
   Dhaf_4384 NONE
   Dhaf_4383 NONE
   Dhaf_4382 4651377 .. 4651424 - -11.5  -4.19678   TGATAGTGCAAGAAA GGGAGCTGCACCT-TGAT-AACC TTTC GGTTGATAAAAGGAGCAGCTCCC TTGAAAAATTAGATG 100 34
   Dhaf_4381 4650487 .. 4650540 - -29.2  -3.74447   GAAAAAATCATAGAA CGACAAAAGAAGGCCTCCGGCAGA TTTTGC TCTGCCGGAGGCCCTCTTTTGTTG CTTGCCGGGCCGTTT 100 361
   Dhaf_4379 4648211 .. 4648229 - -10.3  -4.49337   GAACATGAACTAAAA             GGGGAAC TCTGC GTTCCCC             CTCAAAGCAGGTTTC 100 229
   Dhaf_4378 NONE
        clpX 4645404 .. 4645447 - -24.8  -5.27938   AGCGTTAAAGAAAAA GGGGTGCCGCAAAACGTTGA CTCA CCAACGTTTTGCGGCACCCT CTGTCTTATGCTGAT 100 31
   Dhaf_4369 4636024 .. 4636043 -  -7.9  -5.21709   CCTTACATGAAAAAA            GCACACT GTTATT AGTGTGC             CATTCTCCGTTAGAT  95 46
   Dhaf_4368 4633400 .. 4633427 - -14.3  -3.67296   CACTATCCAGGGAAA        TGAGACAAGGG TTCATT CCCTTGTCTCA         CCCCATTTTTTCATA 100 141
        engB 4632649 .. 4632669 -  -2.6  -2.53995   ATGGAGGGTAATCGA            TCCCAATA ATGTA TATTCGGA            GGGAAGCCTTTTCAT  41 71
   Dhaf_4366 4631276 .. 4631290 -  -2.8  -3.21218   ATTGCCTATGACGAA               CTCC GCCACCT GGAG               CAGCTGGCCTGGTGC  45 333
   Dhaf_4364 NONE
   Dhaf_4363 4628531 .. 4628567 - -13.8  -3.26933   ATATCAACATTAAGA    CAGCTGAGGCAAGGGA TCTGT TCCCTTGCCTCAGTTT    TTTTATTCCCTCACC 100 36
        valS 4623737 .. 4623777 - -18.5  -3.96298   CATGTACCAAGCAAA  GCAAAGGCATACCAACTTC ATA GAAGTCGGCATGCCTTTCC  ATTTCACACTATTCT 100 80
   Dhaf_4360 NONE
   Dhaf_4359 NONE
   Dhaf_4358 4620115 .. 4620130 - -10.4  -3.58505   TCATTAATAATAAGA              GGGACC TTGC GGTCCC               TTTAAAGGCTATACT  82 54
   Dhaf_4357 4619084 .. 4619098 -  -3.6   -2.5511   CATTATATCACTAAG               TTGTCA GGT TAACAA               ACAAATTTACAGCCT  44 89
   Dhaf_4356 4618285 .. 4618304 -  -7.2  -4.95876   AACGATAAGGAAAAA            GTAAGACA CTGC TGCCTTAC             TTTTCGCAAATCTTC  89 98
        aspA 4616685 .. 4616706 - -10.9  -2.73797   ACCCATAGAAATGTA           GCCAGG-GCA TGT TGCACCTGGC           TGGTTTTTCGACACT  77 120
   Dhaf_4354 NONE
   Dhaf_4353 NONE
        radC NONE
   Dhaf_4351 NONE
   Dhaf_4350 NONE
   Dhaf_4349 NONE
   Dhaf_4348 4610308 .. 4610343 -  -7.8  -3.53012   TCCCTCTCGCCTAAA    GAAAAAAAACGAAG GCGAATTT CCTCGTTTTTTTCC     ATTGTTTCGTTATAT  68 57
   Dhaf_4347 NONE
   Dhaf_4346 NONE
   Dhaf_4345 4608234 .. 4608270 -  -9.6  -5.43414   ATTATACACAAAAAA    GTGCCGTAAGAC TGCGTTTTTTAAG GTCTTACGGCAC    TTGCCCGACTATTCA 100 59
   Dhaf_4344 4606896 .. 4606925 -  -6.3  -5.14985   CCAAAGACACAAAAA       GCACCGACCTGCC CTAG AGCCTGTCGGTAC        CTTTTCTCTGAACAT  87 53
   Dhaf_4343 4605468 .. 4605481 -  -3.1  -2.73994   AGCCCTTGAATACGA               GCAAT CTCC ATCGC                TTTCTCTTCCTTTTA  43 112
   Dhaf_4342 NONE
   Dhaf_4341 NONE
   Dhaf_4340 NONE
   Dhaf_4339 NONE
        rplU NONE
   Dhaf_4337 NONE
        rpmA 4599423 .. 4599443 - -14.7  -4.77867   ACACATAACACAAAA            CCCCCGGGA TTC TCCCAGGGG            TGCGATTGTGATTTC 100 43
   Dhaf_4335 NONE
        obgE NONE
   Dhaf_4333 4597180 .. 4597202 - -11.4  -2.67143   ATACCTAGTATAGCA           CCTTATCCTC TGG GAAGATAAGG           CTATCGCGGCAAATC  80 26
        nadD NONE
   Dhaf_4331 4596095 .. 4596124 -  -8.5  -3.32343   CTGACAGTGCGAGAA       GACCCTTCTGACC TTTT GGGCAAGAGGGTC        TTCCAGAACTATGTT  69 44
   Dhaf_4330 4595334 .. 4595351 -  -2.7  -3.06501   TACAGCGCCATGCAA             TTGCTTA TCTG TCAGCAA              ATTTTTGCCTCCTTT  43 12
   Dhaf_4329 4594759 .. 4594782 -   -11  -5.47431   TCAAGATATAAAAAA          CTCCCATCCC TAAA GGGACGAGAG           TAACTTCCCGCGGTA 100 256
        leuS 4592097 .. 4592136 - -10.8  -5.27779   TTGAAGACTAAAAAA  GCTGTTGCTCAACAAACG TCAC CGTTCATTTTGCAACAGC   TTTATCCCACATCCG 100 102
   Dhaf_4327 4590866 .. 4590880 -  -5.6  -5.10033   TCAAGATAAAGAAAA               CCCGGC TTC GCCGAA               CCTTAAACCCATGCC  85 125
   Dhaf_4326 NONE
   Dhaf_4325 4588605 .. 4588635 -  -7.6   -4.0641   TGCTATTGAGAGAAA      TCAGCGGCAGGTG TGTAAC CAAC-GCCGCTGA       TTACATTGTTCTAAC  74 77
   Dhaf_4324 4587006 .. 4587028 -  -8.5  -4.21194   CCTGATGAGGTAAAA           CACCCAGAT GCAAA ATCTGAGTG           TTTTACCCGTGGTTT  79 62
   Dhaf_4323 NONE
   Dhaf_4322 4584352 .. 4584382 -  -4.9  -4.12188   CTATTATTTTGAAAA      TGCCTTCGAGATAA GAGA TTATCTC-AAGGAA       AATTATGATAAACTC  62 96
   Dhaf_4319 4580742 .. 4580755 -  -2.3  -3.54755   ATCCCCTAAACAATA               TGGGG TTTT CTCCA                CATTTCCCTTCAATT  47 35
   Dhaf_4318 NONE
   Dhaf_4317 4577317 .. 4577336 -   -10  -4.20163   AAGCAAAAGAAAAGA            CCCCTCCA AAAC TGAAGGGG             CAAAAGAAAGAGGAG  88 149
   Dhaf_4316 4576200 .. 4576246 - -29.8  -4.19927   AAAACGACATAGAAA GAGCGTGTCGCTCTGTGTTTAT ATT ATGAACACAGAGCGACACGCTC TTCTTATATTGCTTA 100 38
   Dhaf_4314 4575301 .. 4575343 -  -5.7   -5.4505   TCTTTCAACAAAAAA CTTGTCCCCCTTTCCTTCTT TACT AAGAAATAT-GAGGGACAAG TTCTTCTTAGAACCT  90 54
   Dhaf_4313 NONE
   Dhaf_4312 NONE
   Dhaf_4311 NONE
   Dhaf_4310 4570224 .. 4570243 - -10.8  -3.79668   ATGTAATTTATGAAA            GTGAATGC CGAG GCATTCAC             CCCGGCACTTCTATT  88 39
   Dhaf_4309 4568175 .. 4568198 - -10.4  -4.23674   CCCCATGAAGAGAAA          GAAGAAGCAA TGAC TTGCTCCTTC           TTAATTTCTATGAAG  91 105
   Dhaf_4308 4567051 .. 4567077 -  -2.1  -5.46657   GAGTTCAATAAAAAA         GTTCGCCCCAG ACTTA CTGAAGCGTCC         TTTTCTTCAACCCTT  78 61
   Dhaf_4307 4564882 .. 4564900 -    -3  -4.08939   GAACATGGATATAAA             GAGAAGGC ATG GCCTCACC             CCTTTCCGGGAAGAG  58 233
   Dhaf_4306 NONE
   Dhaf_4305 NONE
   Dhaf_4304 4560580 .. 4560615 -  -3.3  -4.87592   CTAGATATAACAAAA    CCGCGTTAATGCC TTGTTAATTC AGCATGAACACGG     TTCTTCAATAATAAT  68 95
   Dhaf_4303 4554022 .. 4554045 - -12.5  -3.88985   AAAATTTTGTAGAAA          GAGGCAGAG TCTCTG CTCTGCCTC           TTAACCGTCTATGCC 100 34
   Dhaf_4302 4553220 .. 4553271 - -24.2  -4.11394   ATTTCACGGGTAAAA TTTCGATAGCCGGAGAAATTGAAT TTAA ATTCAATTTCTCCAGCTATCGGAA CAAAAGAGATTGTGC 100 78
   Dhaf_4301 NONE
   Dhaf_4300 NONE
   Dhaf_4299 4549420 .. 4549455 - -12.6  -2.66316   GCCTTCAGCACATGA    TGATTGGGCACAGGGG AAAA CCCCTGTACCCAATTC     TTTCCTTCACTCTGA  88 41
   Dhaf_4298 4548193 .. 4548204 -  -5.8  -3.41961   ACGACTATGAATCAA                GGGA CCTG TCCC                 TTTGATTCCCCCTGA  59 47
        prmA NONE
   Dhaf_4296 NONE
   Dhaf_4295 NONE
   Dhaf_4294 NONE
   Dhaf_4293 NONE
        rpsU NONE
   Dhaf_4291 4542763 .. 4542790 - -12.2   -4.1964   CTTAACATGTTAAAA        GCCTGATTGC-TA AAC TATGCAATCAGGC        TTTTAGTGAGCTAAG 100 36
   Dhaf_4290 NONE
   Dhaf_4289 4541552 .. 4541573 - -13.1  -5.02074   TTATTGCGCAAAAAA           CACACCCAA AAAC TTGGGTGTG            CTTTCCGCCTATTCA 100 50
   Dhaf_4288 NONE
   Dhaf_4287 NONE
   Dhaf_4286 NONE
   Dhaf_4285 NONE
   Dhaf_4284 NONE
   Dhaf_4283 4533986 .. 4534030 - -18.1  -4.21607   TTTATCCAACATAAA TAACCTCCTCCCTTCTAAAAC CAT GTTTATGAAGGAAGGAGGTTA AATAGTCCAAGCTTG 100 94
   Dhaf_4282 NONE
   Dhaf_4281 NONE
   Dhaf_4280 NONE
   Dhaf_4279 4529166 .. 4529197 -  -8.6  -2.57239   AATATCCAAATACAT      CGGTGCGGAACCGC CTAA ACGGCTCCTCACCC       CCTTCCATTACGAAT  63 33
   Dhaf_4278 NONE
   Dhaf_4277 4528070 .. 4528094 - -10.1  -4.08706   CCTGCAGCAGAGAAA          GGTTGGAAACA GGA CATTTCCAACC          CGCCATTGAGAACAA  88 222
   Dhaf_4276 4527227 .. 4527266 -  -5.1  -3.74224   CGTAAATGAGGCAAA GGCGCTGGTTGCACTTATG CTTG CA-AAGTT-ATCCAGCGCC  AGCCTATACTTTCTG  61 69
   Dhaf_4275 NONE
   Dhaf_4274 NONE
   Dhaf_4273 NONE
   Dhaf_4272 4524098 .. 4524126 - -11.1  -4.89477   GCTTCAATAAGAAAA        GACTCCGGAGA GTACATT TCTCCGAAGTC        TTTTGCCTATTGAAG 100 32
   Dhaf_4271 NONE
   Dhaf_4270 NONE
   Dhaf_4269 4519119 .. 4519168 - -15.6  -4.41348   TTCCTCCTAAAGAAA GTCTGCCGCCAGCCCCTAAGCC CAAACC GGCACCCGGGCCGGCAGCAGAC CGGATCATTTATTTG 100 75
   Dhaf_4268 4518263 .. 4518277 -  -4.2  -3.33492   TCACCCACCCGACAA               CGGATT TGA AGTCCG               CGGAACCCACCGGGA  51 118
   Dhaf_4267 NONE
   Dhaf_4266 4514635 .. 4514656 - -10.9  -4.64676   GCAGGTGTAACAAAA           GACGACTTC CACG GAAGCCGTC            TTTTGTCATATCCCA 100 148
   Dhaf_4262 NONE
   Dhaf_4261 NONE
   Dhaf_4260 NONE
   Dhaf_4259 NONE
   Dhaf_4258 4507232 .. 4507257 - -14.9  -4.24002   CTTTAAACGTTAAAA         GGTTCCACTTT AACG AAAGTGGAACC          TCTAGTAAACCCAAC 100 251
   Dhaf_4256 4506155 .. 4506189 - -17.3  -5.15969   CTGTAATGCAAAAAA    CTCCCGTCCC-GTAGC TTTC GCTACAGGGACGAGAG     TATCCTTCCCGCGGT 100 271
        glyQ NONE
   Dhaf_4254 4503024 .. 4503061 -  -6.4  -6.40073   AATTCAAAAAAAAAA   TAACGGCGCTTCTGC TGAAATTAT GCAAAAGCGCCGC-A   GTGGCTTATCCAATT 100 39
   Dhaf_4253 NONE
   Dhaf_4252 NONE
   Dhaf_4251 4498666 .. 4498703 - -12.1   -5.5074   TAACCCAATAAAAAA   CAGGGTACTGCTCCTTA AAAT TAAGTGGCAATACCCTG    TTTATATTTGTTTAA 100 50
   Dhaf_4250 4498174 .. 4498187 -  -3.1  -3.61001   CCGCATAAAAACAGA               TAGCA CAAG TGCCA                TGGCTTTTTCACGGT  51 184
   Dhaf_4248 4497396 .. 4497410 -  -4.4  -3.87994   ACTTACCCTTATAAA               TATTAA GTG TTAATA               TTCCCGCTCTATGGG  57 34
   Dhaf_4247 4496454 .. 4496484 - -11.3  -5.46706   ACCGGAAAACAAAAA       TCAACCGAAACAC ATTAA ATGTTCCGGTTGA       TTTTGTTTCAAAAAG 100 65
   Dhaf_4246 NONE
   Dhaf_4245 4493573 .. 4493583 -  -3.2  -3.10715   TTCATCACCACCCAA                 CTCC TGA AGAG                 CTGACACCTGAAGAG  46 156
   Dhaf_4242 NONE
   Dhaf_4241 NONE
   Dhaf_4240 4488555 .. 4488597 - -20.3  -3.93262   TCTCAAGATATGAAA TAAGGTATTGGCACTTAAT TAAAC ATCAAGTGCCAATACCTTA TAAAAAGATGACATT 100 66
   Dhaf_4239 NONE
   Dhaf_4238 NONE
   Dhaf_4237 4486576 .. 4486615 - -23.9  -3.12999   TGATCCTACAGGCAA  GAACAGGGTATTCCGTC TGAAAC GACGGAATACCCTGTTC   TTCTGATACATAAAA 100 74
   Dhaf_4236 4485115 .. 4485152 - -10.8  -4.74504   ATGGTAACTGAAAAA   CACAACAATCCGAACCC TGGTC AGGT-CAGATTGTTGTG   TTTAGAGGTCATTTT 100 65
   Dhaf_4235 NONE
   Dhaf_4234 4482993 .. 4483022 - -12.3  -6.25578   AGCAAACAAAAAAAA       CCTTCGCTATC ATATTTCG GATAGCGAAGG        TCCTTTTAAAAGAGG 100 57
   Dhaf_4233 4482154 .. 4482174 -  -9.8  -5.13344   ACATGAATATAAAAA            GAGAACCA TGGTC TGGTTCTC            AAAAAGAGGGAAAAT 100 231
   Dhaf_4231 NONE
   Dhaf_4230 NONE
   Dhaf_4229 4476953 .. 4476989 - -18.4  -5.33866   GAAATCTATAAAAAA    TGAGAGGTAATAATTC TCTGC GAATTATTACCTCTCA    TTTTTACATAGGTCA 100 71
   Dhaf_4227 NONE
   Dhaf_4226 NONE
   Dhaf_4225 4471700 .. 4471745 - -10.5    -5.626   TATTGTATAAAAAAA CGCTGAAGGCTCGCAAAAAACA TAG CGTT-TATGCGGGCTTTCAGCG TTTTACATATTTTCC 100 47
   Dhaf_4224 4470315 .. 4470325 -  -2.4  -3.28712   GGTTCTTTTTCAGAA                 GCAG GCT CAGC                 TTAAAAACTTGAGTG  45 21
   Dhaf_4223 4468910 .. 4468944 - -15.1  -5.28176   TCTAGGCACAAAAAA     GATCTCCCCTGCGCT TTTTG AGCGAAGAGGAGATC     TTTAGAAATTACATC 100 67
   Dhaf_4222 4467864 .. 4467876 -  -3.4  -3.09635   ATCGCCATGACTTAA                GCAA GTATT TTGC                TCAGCCCTACTTGTC  46 9
   Dhaf_4221 NONE
   Dhaf_4220 4465128 .. 4465147 -  -4.2  -2.87132   CGTCTCTGTCACACA            CACTCCTC CTTT GAGGCATG             GCTTATGCATTTATT  46 78
   Dhaf_4219 4464088 .. 4464110 -  -9.2  -5.14563   GCTGGCACTAAAAAA           GGTCTGTC TTTTGGC GACAGACC           CTGGATTATTTCGGC 100 50
   Dhaf_4217 NONE
   Dhaf_4216 4459657 .. 4459683 - -11.7  -4.99035   TCACTCATAGAAAAA         TAGCGAGATGC TTCAT ACATCTCGCTA         CGTTCGTTCTTAAGT 100 394
   Dhaf_4215 NONE
   Dhaf_4214 4457615 .. 4457640 -  -9.1  -5.21709   CTCCACAGTAAAAAA         GGCACTCCTAT TATA ATAGAAATGCC          GCTGTACCCTCTAAC 100 36
   Dhaf_4213 4457168 .. 4457178 -    -4  -3.50251   TTAATAACCAACCAA                 CTAA CTT TTAG                 CGAAGTTTTTCCCTG  52 15
   Dhaf_4212 NONE
   Dhaf_4211 4454775 .. 4454812 -   -12  -4.91852   TTGAGTAAAAATAAA   GGGACGGTTCAAAGCA AAAACA CGCTTTGGTCCGTCCC    CTTTTATCTCAATTT 100 75
   Dhaf_4208 4453489 .. 4453507 -  -2.4  -3.79519   AATCCGATTATCAAA             CTTCAACA CAT TTCTGAAG             CGAGGGCCCTCTCCA  51 9
   Dhaf_4207 NONE
   Dhaf_4206 4451009 .. 4451020 -    -3  -3.14931   TTCAGTTTTCATTAA                GATA ATGA TATC                 CTATTCACCGGCATG  46 84
   Dhaf_4205 4450682 .. 4450698 -    -8  -4.72986   GATTTGCACGAAAAA              GGGACT TTTGC AGTCCC              TTTTTTGTGTCATTA  86 66
   Dhaf_4201 4447545 .. 4447599 - -18.1   -3.1489   CCAAATATGACTTAA CGGAGCCCGGACAGTCCCTGGAAGCCG ATC CGACTT-CAGGAACT-TCCGCACTCCG TTAACTTAGCGAATG 100 65
   Dhaf_4198 4445063 .. 4445097 - -15.1   -4.1822   TTTCACCCCAAGAAA     CGCCCTGATCTAACT ATAAA AGTGAGACCAGGGCG     TTTTTCATTAAAGGG 100 33
   Dhaf_4197 NONE
   Dhaf_4196 NONE
   Dhaf_4195 4442171 .. 4442181 -  -2.4   -2.7752   CATATTATTGGAAAT                 TCGC AAA GCGG                 TTCACCATCCTTCCA  41 46
   Dhaf_4194 NONE
   Dhaf_4193 NONE
   Dhaf_4192 NONE
   Dhaf_4191 4439804 .. 4439851 - -28.8  -4.20953   GCAAAACAAGAACAA TACTTAAGAGGGGAATTCCGGC AATC GCCGGAATTCCCCTCTTAAGTC TATTTTTTGATATGA 100 25
   Dhaf_4190 4439155 .. 4439184 -  -2.9  -3.61517   AGTGCGGGTGAAGAA       CTTCTACCCTCC GGCCGGT GTAGGG-AGAAG       GATCTACTTTTCCTG  50 178
   Dhaf_4189 4437884 .. 4437908 - -11.5  -3.84406   CTTTCATTACAAGAA          GAGGCCAGA TGAAAAC TCTGGCCTC          TAAAGGTTTGCCTAA  95 44
   Dhaf_4188 NONE
   Dhaf_4187 4434885 .. 4434901 -  -9.4  -2.73771   TTATAGGTTCTAAAT              GCTGCC ATCAA GGCAGC              CTCATCGCGAACATC  70 243
   Dhaf_4186 4432953 .. 4432968 -  -6.8  -3.30771   CTATAGGGGTCATAA              CCG-CCC AGG GGGTCGG              TTTCCCGATAGCCGT  61 113
   Dhaf_4184 NONE
   Dhaf_4183 4430527 .. 4430543 -  -2.9  -3.92522   GCTCAATCTCATAAA              CCAGCAA CAA TAACTGG              TATACCCTCTTGCTT  54 42
   Dhaf_4182 NONE
   Dhaf_4181 NONE
   Dhaf_4180 NONE
   Dhaf_4179 NONE
   Dhaf_4178 NONE
   Dhaf_4177 4421446 .. 4421459 -  -2.5  -2.57211   ATGTCTTCCGATAAG               TTTAA ACTC TTAAA                ATAGATTTTGAACAC  41 21
   Dhaf_4176 NONE
   Dhaf_4175 NONE
   Dhaf_4174 NONE
   Dhaf_4173 NONE
   Dhaf_4172 NONE
   Dhaf_4171 4415086 .. 4415103 -  -7.1  -3.57615   TGAAGATGTCCCAAA             TTCGAAA CCGG TTTCGAA              TCTGACACGACCTAT  68 229
   Dhaf_4169 NONE
   Dhaf_4168 NONE
   Dhaf_4167 4410953 .. 4411010 - -14.3  -3.62591   CCTATAATTTTGAAA TATTACTGTTCTGTCCAGAATGCGACA ACGT TGTCGCATTCTGGACAGAACCCAAGTT CCTTAGAAATGCCGC 100 223
   Dhaf_4166 NONE
   Dhaf_4165 NONE
   Dhaf_4164 NONE
   Dhaf_4163 NONE
   Dhaf_4162 4407658 .. 4407671 -  -2.4  -2.66692   GACGATCATGAGAAT               TCCT CCTTTC AGGA                CTGAACTGAGTAGTT  40 45
   Dhaf_4161 4407216 .. 4407258 - -12.9  -4.39002   AAAGCTTGTACAAAA GCACTGCCTCAATCCTTTGG TCAA CCAA-GGATTGAGGCAGTTA TCATCAATGGATCCT 100 41
   Dhaf_4160 4405917 .. 4405927 -  -5.4  -3.22091   ATTTGAAGCTAGGAA                 CTGA ATT TCAG                 GGCCGATCCTTCGAT  52 299
   Dhaf_4157 4402185 .. 4402203 -  -6.7   -5.3104   CCAGGAAAAATAAAA             CACTCCG ATAAG CGAAGTG             TTTTTTGACTCAAGA  89 128
   Dhaf_4156 NONE
   Dhaf_4155 NONE
   Dhaf_4154 NONE
   Dhaf_4153 NONE
   Dhaf_4152 NONE
   Dhaf_4151 4396979 .. 4396992 -  -3.9  -2.60496   CCTTTCCTCAAACAT               TAATC ATCT GATTA                TATATTAGATACTAT  44 113
   Dhaf_4150 NONE
        fliG NONE
   Dhaf_4148 NONE
   Dhaf_4147 NONE
   Dhaf_4146 NONE
   Dhaf_4145 NONE
   Dhaf_4144 NONE
   Dhaf_4143 NONE
   Dhaf_4142 NONE
   Dhaf_4140 NONE
   Dhaf_4139 NONE
        fliP 4385050 .. 4385060 -  -3.2  -2.64747   TTAGGTTAGTAGAAG                 CTCG TGA CAAG                 TGACTGGACGACAAG  42 5
   Dhaf_4136 NONE
   Dhaf_4135 NONE
        flhA NONE
   Dhaf_4133 NONE
   Dhaf_4132 NONE
   Dhaf_4131 NONE
   Dhaf_4130 NONE
   Dhaf_4129 NONE
   Dhaf_4128 NONE
   Dhaf_4127 NONE
   Dhaf_4126 NONE
   Dhaf_4125 NONE
   Dhaf_4124 4372084 .. 4372121 - -11.4  -4.18763   AAGAAATGCCGAAAA   GGACTTTGGCATAAGG TTTTAC CCTTATACCCAAGCCC    TTAGCCTATTATCCG 100 34
   Dhaf_4123 4371061 .. 4371071 -  -3.2  -2.56095   CCGACATCTAATTTA                 CCTC CTT AAGG                 AGTTAGCCATGCTCC  42 12
   Dhaf_4122 NONE
   Dhaf_4121 NONE
   Dhaf_4120 NONE
   Dhaf_4119 4368489 .. 4368516 - -13.6  -6.10295   TCAATATAAAAAAAA        TCAGGTCGCATGA TCC TCATGCG-CCTGA        TTTTTTATGCTTGTG 100 30
   Dhaf_4118 4367151 .. 4367186 -  -7.5  -2.87501   CCTCATCAAACAGGA    TGGGCTGGTTCCGGAC TCCTG GCCCGGAACC-GCCTT    AAGCTTATTTCTCTG  59 30
   Dhaf_4117 NONE
   Dhaf_4116 NONE
   Dhaf_4115 NONE
   Dhaf_4114 NONE
   Dhaf_4113 NONE
   Dhaf_4112 4361380 .. 4361395 -  -3.9  -3.00022   TCCATCTTACATATA              CCCGC CTCTCC GCAGG               GTTTCCAGTCCGCCC  46 1
   Dhaf_4111 NONE
   Dhaf_4110 NONE
   Dhaf_4109 NONE
   Dhaf_4108 NONE
   Dhaf_4107 NONE
   Dhaf_4106 4356887 .. 4356914 -    -7  -5.00642   GAAGGGACACAAAAA        GGGCGCATCTTC CTTG GAAAATACGCCA         GCTCTGGATCAAAGC  86 52
   Dhaf_4105 4356020 .. 4356044 - -11.5  -4.18018   GGTTGTTATGCAAAA          GACCGATCAAA GTA TATGATCGGTC          TTTCACTAAGCAAAA 100 67
   Dhaf_4104 NONE
   Dhaf_4103 4354239 .. 4354254 -  -3.2   -2.6891   TATGATATCATATTA              CGACAC TTCT GTGTTG               CTAAAACGCGAGAAT  42 90
   Dhaf_4102 4353567 .. 4353584 -  -9.9  -4.77986   CGAAAGACGGAAAAA             GGAAGTC CTGC GACTTCC              TTTTATACTTCCAAG 100 41
   Dhaf_4100 4351715 .. 4351725 -  -6.8  -3.03243   ACTCATCCTCTAAGA                 GGGA ATT TCCC                 TCCACCTTCTTTGTG  58 42
   Dhaf_4099 NONE
   Dhaf_4098 NONE
   Dhaf_4097 4348143 .. 4348168 - -14.1  -5.00616   GGCCTCCCTAAAAAA         GTGAGACAGGA TGCC CCCTGTCTCAC          TTTAATCCATATCGA 100 22
   Dhaf_4093 4342883 .. 4342939 -    -9  -3.98658   ACGCCATTAAAAATA TGCTCCCCCCTATGT-GACAAGT TTTTATTATTTC ACTTGTCTACCTAGAAGGGAGCA TATCATTTCTCATAA  80 71
   Dhaf_4092 NONE
   Dhaf_4091 4341273 .. 4341287 -  -2.8  -2.71094   AATATTTACAGAGGA               GGGA TTAGACT TCCC               CCTATGCAGCTTTAA  41 27
   Dhaf_4090 4340696 .. 4340715 -  -2.9  -4.80453   GTACTATAAAATAAA            TTACCTC TGTCAC GAAGTAA             TTTGATTACCTAAGA  67 166
        dinD 4339411 .. 4339450 - -10.8   -4.5448   TAGTCAGAAAAATAA  CAAAAGAGGGCGACTG GTAGATGT CAGAAGCCCTCTTTTG   CCGTAAACTATAAGT 100 386
   Dhaf_4088 NONE
   Dhaf_4087 NONE
   Dhaf_4086 NONE
   Dhaf_4085 NONE
   Dhaf_4084 NONE
   Dhaf_4083 4333427 .. 4333454 -  -2.6    -5.626   GATTTTAGAAAAAAA        TCCGCAGCTCCC CCAA GGAATTTACGGA         TTTTACAATTTGCAG  84 63
   Dhaf_4082 NONE
   Dhaf_4081 4331082 .. 4331103 -  -5.1  -2.91924   GTATGCCTCACAAAT           CCAGGGTTT AAAC AAATCCCGG            CGATTTCTTCAGGAT  52 11
   Dhaf_4080 NONE
   Dhaf_4079 4330515 .. 4330546 - -17.6  -3.85817   AGCTCGGCTGATAAA      TTAAAAAGGGAGTC AACA GACTCCCTTTTTAA       GAACATGAATTAAGC 100 35
   Dhaf_4078 4329895 .. 4329913 -  -5.2  -5.88565   CGCACAATAAAAAAA             GCCCGATC CAT GACCAGAC             TTTAATCAATCGACT  95 46
   Dhaf_4077 4327587 .. 4327601 -   -10  -3.54424   CGTGATCTCCTGAAA               CCTTCC ACC GGAAGG               TTTCTTGATCGGAGA  78 92
   Dhaf_4076 4327137 .. 4327167 - -10.6  -4.82901   TCTTCCCTACAAAAA       GAACCTATTCTGCA CAA CACAAAATAGGTTC       TCCTTTTCCACCTAT 100 51
   Dhaf_4075 NONE
   Dhaf_4074 4324249 .. 4324262 -  -8.1  -3.33815   ATTTTCTTGAATCAA               GGGGA CCTG TCCCC                TTGATTCACCTTTGA  66 48
   Dhaf_4073 4322619 .. 4322677 - -20.6  -3.74315   AAAAACGCCAAAAGA CAGGTCCCATCATTCACT-GCCTGGAA GGAATA CTCCGGGCTAGTGAATAACGGGACCTG TCCCCTTGATTCAAA 100 41
   Dhaf_4072 NONE
        mraW NONE
   Dhaf_4070 4320313 .. 4320325 -  -4.8  -3.56273   CGCATGACGACATAA                GGAC TCATC GTCC                CACCCCCTATTCTAG  55 74
   Dhaf_4069 NONE
   Dhaf_4068 NONE
   Dhaf_4067 NONE
        mraY 4314228 .. 4314249 -  -2.4  -2.64155   TTTTCTTTAAATTCA           TTCTTTCA CCCTCT TGAAAAAA            TCAAGCTCAGAACAT  40 32
        murD NONE
   Dhaf_4064 4311531 .. 4311587 -  -3.4  -3.54935   CAAACTTGGGCTAAA CTGCTCCCCAGACTGCGGGACGGGTC ACACG GACGTGACCCGCGCCCTATTGAGCAG GAGCGATTTAGGGCG  49 184
   Dhaf_4063 4309567 .. 4309609 -  -7.6  -2.57931   TTCAGTTTGCATAAG CCCTCGGGAGAGGCCCCA TTGCCGG TGAGGATCCTCCTGAGGG ATTCCGGGCCAATAG  60 318
   Dhaf_4061 4308175 .. 4308194 -  -8.6  -2.70932   GTTTTCCGGTAATGA            CATAGCGA TCCA TCGCCATG             AAAGATTCCTCCCTC  63 41
   Dhaf_4060 NONE
   Dhaf_4059 NONE
   Dhaf_4058 4305638 .. 4305649 -    -3  -3.89336   CGAAGCAAATTCAAA                GTAT TCCC ATAC                 CAAAAGTAAATTCTA  53 154
   Dhaf_4057 4304410 .. 4304448 - -14.6  -4.98255   GGCCAATGATAAAAA   GCCAGGCCTTGCCTGCTC ACT GAGCACTCAAAGCCTGAC   TCCTATGTACTTCAT 100 59
   Dhaf_4056 4303423 .. 4303468 - -30.9  -4.14345   CAACAGTAAAGCAAA GGAGTTGTCCGAAATAGGTAC GCGC GTACCTATTTCGGACAACTCC TGCAAAATCAGTTTG 100 69
   Dhaf_4055 NONE
   Dhaf_4054 NONE
   Dhaf_4053 4300741 .. 4300754 -  -6.7  -3.49102   ATATTCCGGAGAGAA               GAGGT TTAT ACCTC                ATACATACTTGCGCA  63 24
   Dhaf_4052 4300341 .. 4300373 - -11.3  -3.70149   TTTACACGATTTAAA      GCCTTCCGAGGGG TGTATTG CCCTTCAGAAGGC      TTTCTCTATCTTTTA  90 79
   Dhaf_4051 NONE
   Dhaf_4050 NONE
   Dhaf_4049 NONE
   Dhaf_4048 NONE
   Dhaf_4047 NONE
   Dhaf_4046 NONE
   Dhaf_4045 NONE
   Dhaf_4044 4294022 .. 4294048 -  -2.2  -2.84794   TTAATGCCATAATCA         TCCTCCTCTTAA TGC TTATGAGGTGTA         TATAGTATGACGTTC  41 7
   Dhaf_4043 NONE
   Dhaf_4042 4292742 .. 4292766 -  -5.7  -5.47159   TCTGAATATAAAAAA         TCCCGCACCC AAAAAA GGG-ACGGGA          TATCACTCGCGGTAC  90 277
        ileS 4289849 .. 4289896 - -18.1  -2.87564   TTATCGTTTTAGATA CATTAAACAAGACTTGAGCAG ATGGTA CCGCCCAAGTCTTATTTAATG GAAATATTGAAGAAA 100 50
   Dhaf_4040 4288447 .. 4288474 -  -7.8  -5.79595   GGGTAAAATAAAAAA        CAGAGAATAGCAC GTC GCGCTA-CCTCTG        TCCTTTGACCTGAGA 100 344
   Dhaf_4039 4287222 .. 4287240 -  -2.4  -4.21194   CTGCAGCACTTAAAA            CCT-GCC TTGCCC GGCGAGG             ACGATTTTCGCACCG  55 43
   Dhaf_4038 NONE
   Dhaf_4037 NONE
   Dhaf_4036 4283846 .. 4283876 -  -9.8  -3.78922   AAAAAAGTATCGAAA      GATCTCCC-GCCA AAAAAA CGGCAGGGAGATC       TTTTTACTAATCATA  84 87
   Dhaf_4035 NONE
   Dhaf_4034 4282654 .. 4282680 -  -2.3  -2.65993   AGTATACGTACAGCA         TCCCTATTG CCTCATTAC CAATGGGGA         TGCCGAGTGAGTTCT  40 40
   Dhaf_4033 4282318 .. 4282342 - -12.9  -3.79747   TTACCTATGACCAAA          TGGGAGCGAAT CTG ATTCGCACCCA          AACGCTGGCCGACGG  93 239
   Dhaf_4030 NONE
   Dhaf_4029 4278625 .. 4278640 -  -6.1  -5.06585   GAAATCAGAGAAAAA              GGAGC TTAAAC GCTCC               CCACCGGCGTGAAAT  84 15
   Dhaf_4028 4277485 .. 4277499 - -12.8   -5.3167   TAAAAATAAAGAAAA               CCCGCC TCA GGCGGG               TTGCTCTCTTCTTTA 100 52
   Dhaf_4027 4276568 .. 4276578 -  -2.4  -2.62983   TTTAGGCTCAGACCA                 TGCC TTG GGCG                 GACTTTTGGGCCTGC  40 7
   Dhaf_4026 4275570 .. 4275595 - -11.9  -4.70659   CCGGATAGGGAAAAA         GCCGGCAAACT CTAT AGTTCACCGGC          TTTTGCCTTTCGCGA 100 70
   Dhaf_4025 NONE
   Dhaf_4024 NONE
   Dhaf_4023 NONE
   Dhaf_4022 NONE
   Dhaf_4021 4271376 .. 4271395 -   -10  -5.36441   TCGGCATATAAAAAA            CTGTCCGC CACA GCAGACAG             TTTACCCTACTTCTT 100 195
   Dhaf_4020 4270655 .. 4270677 - -14.2  -5.55769   CCTGATAACAAAAAA           TCCCCTTGCC AAA GGCAAGAGGA           TATAAGGATACAAAG 100 142
        pyrB 4269648 .. 4269659 -  -3.6  -2.53382   AGCATTTTTAATCCA                CCAC ATGA GCGG                 TTCCTCCTCCTAATA  44 6
   Dhaf_4018 4268332 .. 4268343 -  -2.2  -3.03348   TGCAATACGAGAAAC                GCCA TGCT TAGC                 CCTCCTTAAATTTCA  42 31
   Dhaf_4017 NONE
   Dhaf_4016 NONE
   Dhaf_4015 NONE
   Dhaf_4014 4262052 .. 4262064 -  -3.3  -4.11216   TCGCTACTCCCAAAA                GGCGA TAT TCTCC                GAAAATGCTCGTCCG  58 122
   Dhaf_4013 NONE
        pyrE 4260478 .. 4260534 - -16.1   -5.1675   GGACGTACTAAAAAA CATGCTCCCGTTAAGGCAGACAGGCC ATAAAA AACCTGTC-ACCCTAACGGGAGCATC TATTCTCTATCTACA 100 114
   Dhaf_4011 4259104 .. 4259139 - -10.8  -2.80895   TGCAACACATATAAT    GATTTTGATTATATAT TTGC ATATATCATCAAAATC     TTCAATAAGTATCTA  77 27
   Dhaf_4010 4258234 .. 4258246 -  -6.3  -2.78384   CTCCGCGCCATGACA                GCAAA TTC TTTGC                AACCAATTTCATTTA  55 184
   Dhaf_4009 NONE
   Dhaf_4008 4255333 .. 4255350 -  -9.1  -3.39327   CCCCCATACTCAGAA             GTCGCCA TAAA CGGCGAC              TCTTTAATCATCTTT  71 88
   Dhaf_4007 4254362 .. 4254405 - -27.8  -4.59773   CCTCATCCTCAAAAA GGGCTGTCCGAAATAAGTAC GCGC GTACCTATTTCGGACAGCCC TTCTCCTTTGCACAG 100 82
   Dhaf_4006 4253558 .. 4253599 - -21.1  -4.21319   AGCAAGCTCAATAAA CATGTCCCCAAATGCGACA ACGT TGTCGCATTTGGGGACAAA  CCTCCTTAGTCACAC 100 31
   Dhaf_4005 4252481 .. 4252495 -    -5  -2.97721   CAAAATCCTACAAAC               GTGTAA AAA TCACAC               CAATTCCTAATCCGC  50 515
   Dhaf_4003 4251903 .. 4251919 -  -6.7   -4.0641   CTTGAGTTATATAAA              GATTTTT GTC AAAAATC              AGGAGTATCCTTGAC  68 428
   Dhaf_4000 4250821 .. 4250835 -  -4.3   -3.6217   ATTTACGATATATAA               GACTA GTGGA TAGTC               GCAACCACTTTTTGA  54 120
   Dhaf_3999 4249416 .. 4249444 -  -3.2  -3.85698   TCGCTTGCGGATAAA       GTCCTG-CCCAAAT CGA AATTGGGTCAGG-C       GTTGAGTTATGCCTT  53 355
   Dhaf_3994 4245957 .. 4245974 -  -9.1  -3.91897   CCCCCTAGCCAGAAA             GCCGCCA TGGA TAGCGGC              TCCCTTAAAGATTGT  80 45
   Dhaf_3993 NONE
   Dhaf_3992 NONE
   Dhaf_3991 NONE
   Dhaf_3990 4242695 .. 4242705 -  -3.2  -3.01712   GGCTTTCGTCTAACA                 TCCC GCG GAGA                 GCCGCCATGGACGGC  44 132
   Dhaf_3989 NONE
   Dhaf_3988 NONE
   Dhaf_3987 NONE
   Dhaf_3986 4240058 .. 4240069 -  -4.4  -3.14013   CAAGGATATTGAAGA                TCAC ATTC GTGA                 TATTTACGGCAGCGG  49 389
   Dhaf_3985 4239381 .. 4239415 -  -3.5  -4.56597   TGCTGTTTTGAAAAA    TGCAGAGGAGCTGCCA AACA TGTTTGC-CCTCTGCA     TTTTTTATAAATCTT  65 322
   Dhaf_3984 NONE
   Dhaf_3983 4237169 .. 4237192 -  -6.7  -3.41795   AAACGGCTATTATAA          GGAGTCATG TTCGCG CATGGCTCC           TCTTTGGTTTTAGTA  63 116
   Dhaf_3978 4229340 .. 4229359 -  -4.9  -4.06055   AGGGCCTAAATGAAA            GAGCCGC AACAAG GGGGCTC             ACTCTCAAAATAAGT  61 137
   Dhaf_3977 NONE
   Dhaf_3976 NONE
   Dhaf_3975 NONE
   Dhaf_3974 NONE
   Dhaf_3973 NONE
   Dhaf_3972 NONE
   Dhaf_3971 4222281 .. 4222296 -  -5.4  -3.60098   ATCGCTCAGGGCAAA              CATGCC CTTC AGCATG               ACCTTACCTCCCCTC  59 18
   Dhaf_3970 4220549 .. 4220573 -  -2.8  -5.40072   TTTTCTTTAAAAAAA         TTGGCC-CTGC CCCG GCAAAGGCCTA          AATTTGCTGAAGAGA  76 23
   Dhaf_3969 NONE
   Dhaf_3968 NONE
   Dhaf_3967 NONE
   Dhaf_3966 NONE
   Dhaf_3965 4207997 .. 4208015 -  -2.4  -3.12395   CGTACCACCTAAAAC             CCCTATAC GGT GCATAGAA             TCGCCTCTTCTCTTT  43 40
   Dhaf_3964 NONE
   Dhaf_3963 4206061 .. 4206092 - -18.8  -4.15222   ACCTGCTTTAACAAA      GCCCATGTGTCGGG CGGG CTCGACACATGGGC       TTCGCCTTTGGGCTT 100 105
   Dhaf_3962 4204245 .. 4204267 -  -6.3  -3.14132   GGTGGCGGCGATCAA           CCGGAAAAA GGGCT TTCTCCCGG           ACTGCGGGGTGGAGC  57 405
   Dhaf_3960 4201929 .. 4201963 - -10.7  -2.69869   ATCATACCAAAGCCA     CGGGGCAAGCCCG GATAATAAA CGGACTTGCCCTG     CACTTTTTGGCATTG  76 79
   Dhaf_3959 NONE
   Dhaf_3958 NONE
   Dhaf_3957 4200498 .. 4200541 - -25.6   -5.1675   TCATTGAGGAAAAAA GGTCTGTCCGAAATAGGTAC GCGC GTACCAATTTCGGACAGACC TTTTTTCATAGAGTC 100 119
   Dhaf_3956 NONE
   Dhaf_3955 NONE
   Dhaf_3954 NONE
   Dhaf_3953 4193213 .. 4193238 - -10.4  -4.18018   TGCTTGTAGCTAAAA         CAGGGCTGCG CTTTTC CGAAGCCCTG          GCCCTAACGCCTAAA  85 513
   Dhaf_3949 4190148 .. 4190175 -  -6.4  -2.53701   TAAAGATTCAGTAAG        GATTTTAATCTG TTTT CAGTTTAAAACC         GATCCCCCATACCGC  53 2
   Dhaf_3948 NONE
   Dhaf_3947 NONE
   Dhaf_3946 4187239 .. 4187252 -  -4.5  -3.14931   GGTACTGCCGATTAA               CCAGG TTAT CCTGA                ATTCTCCTTCAGGCA  51 135
   Dhaf_3945 4186480 .. 4186497 -  -6.3  -2.66634   GACGCCACCACATCA             TCCCACA AGGA TGTGGAA              AAGCAGAAATATACA  54 157
   Dhaf_3944 4185444 .. 4185487 - -11.8  -4.03234   CCTTTTGGAGAGAAA CCATGTCCCCAAACACGACA ACGT TGTCGCATTTGGGGACAAAC CCGGTTTCCGGCATT 100 65
   Dhaf_3943 4184699 .. 4184721 -  -3.4  -3.13164   TTCTCAACTATCCAA           CTATCCCG AATCAGA CAGGACAG           GACCTTGATTCTTTT  46 40
   Dhaf_3942 4183653 .. 4183696 -   -30  -4.25283   ACTTTGCCAGGAAAA GGTCTGTCCGAAATAGGTAC GCGC GTACCTATTTCGGACAGACC CAACGGCGATGTTTA 100 41
   Dhaf_3941 NONE
   Dhaf_3940 4178134 .. 4178169 - -18.6  -3.34988   CTACTGAGAAATACA    GAAAACAAGGACAGGT TTTT ACCTATCCTTGTTTTC     ATTCGACTAAATAAT 100 82
   Dhaf_3939 NONE
   Dhaf_3938 NONE
   Dhaf_3937 4173881 .. 4173894 -  -5.9  -3.73783   TAGGTAAGCTAACAA               CCGGC GGGA ACCGG                GGCTGCTTTTTTATT  61 460
   Dhaf_3936 NONE
   Dhaf_3934 4171245 .. 4171260 -    -6  -3.54424   GGCCAGCCCCTGAAA              CCCCGC CCTC GCCGGG               TGGCAGCAGAACAGT  59 147
   Dhaf_3933 NONE
   Dhaf_3932 4167549 .. 4167574 -  -5.4  -4.08767   TCCATTTTCGCAAAA         CCAAGTGCTG TTAACT CAACCCTTGG          CAGCACTATGCACAC  65 44
   Dhaf_3931 NONE
   Dhaf_3930 4165693 .. 4165708 -  -3.2  -2.96329   GTAAGCTAACAACCA              TCCTTG AGGT CACGGA               GTTTTTGAGTCATGT  44 482
   Dhaf_3928 NONE
   Dhaf_3927 4163040 .. 4163057 - -10.5  -4.25104   TGCCGTGCACGAAAA             GCCGCCC CTAA GGACGGC              CTCTGGTCATGGTTT 100 183
   Dhaf_3926 NONE
   Dhaf_3925 NONE
   Dhaf_3924 4161053 .. 4161064 -  -7.2  -2.82516   GCTGGTATTATGACA                CGGC CCTG GCCG                 CCGGAACCGAGGAGG  57 336
   Dhaf_3922 4160155 .. 4160167 -  -2.7  -2.91383   ACGGGTAGGTACATA                CATAT TAA ACATG                ATTATTTCCTCCTGT  43 17
   Dhaf_3921 NONE
   Dhaf_3920 4158130 .. 4158162 - -14.2  -4.50976   TGGCACATCACAAAA      GCCTGCAGAATCCA AAACA TGGAGCCTGCAGGC      TTTTTCCATTCATTT 100 40
   Dhaf_3918 4155709 .. 4155742 - -13.2  -3.72453   ACTAAGAACGCGAAA     GCCTGCAGAATCCA AAAGTA TGGAGCCTGCAGGC      TTTCATTTCTCATCA 100 98
   Dhaf_3915 4150283 .. 4150336 -  -3.5  -5.75342   GTTGTTGAAAAAAAA TAATAAACGGTGCTC-AAAAC--TGG TCAAG CCAATGTTTTTGAGCACCGTTTGTTC TGTTATCATGTTAGT  91 88
   Dhaf_3913 4148889 .. 4148923 - -14.5  -3.53779   CCCGCAAAATATTAA    GTCCGCAAACCCT-TA TAAT TACAGGGCTTGCGGAC     CATTTTCTTCTTCTT 100 113
   Dhaf_3912 NONE
   Dhaf_3911 NONE
   Dhaf_3910 NONE
   Dhaf_3909 4145239 .. 4145274 -  -4.1   -3.5861   ATGGACAATAAGGAA   CGACCTTATCTTACCAC AAAA GCGGG--GATAAGGTCG    TTTTCCCTTAATGAT  54 52
   Dhaf_3908 NONE
   Dhaf_3907 4143845 .. 4143891 - -18.3  -3.02144   GTATCCCCGGCAATA TGC-CAAGATGGACTGCCTCAT CCCC ATGAAGCAGTCCATCTTGTGCT TTAATTCAATACAAA 100 141
   Dhaf_3902 NONE
   Dhaf_3901 NONE
   Dhaf_3900 NONE
   Dhaf_3899 NONE
   Dhaf_3898 NONE
   Dhaf_3897 4130357 .. 4130398 -  -9.5  -4.88067   ATCTACCTATAAAAA GTTCGTGCCAAATTCCCAA GCGC TTGGGAATTTGGCACAGGT  TTCAATCTTTCTTTC 100 27
   Dhaf_3896 NONE
   Dhaf_3895 NONE
         gmk NONE
   Dhaf_3893 NONE
   Dhaf_3892 NONE
   Dhaf_3891 4125510 .. 4125561 -   -24  -3.55444   GTTCTATCTTCTAAA CCAATCAGGCCGGAGGATTGTTCC TATT GAAACAATCCTCCGGCCTGATCCA TCTGCTTTTGAAATT 100 47
   Dhaf_3890 NONE
   Dhaf_3889 NONE
   Dhaf_3888 NONE
   Dhaf_3887 NONE
   Dhaf_3886 NONE
   Dhaf_3885 NONE
   Dhaf_3884 4118937 .. 4118958 - -11.6  -4.36914   CCTTTTGTTACAAAA           GGGGCTGT TTAGCC ACAGCCCC            TTTGTTTTTGTTTTT 100 53
   Dhaf_3883 NONE
   Dhaf_3882 4117363 .. 4117378 -  -4.7  -3.60792   TTGTCAATTTTTAAA              GGGAA TGGGTC TTCCC               TCAATACCTGCAGGT  57 40
   Dhaf_3881 NONE
   Dhaf_3880 4115883 .. 4115903 -  -6.9  -4.54727   TTGTGTAAAGCAAAA            CTGCATC GTAGATT GATGCAG            CTCATTAAATCAGCA  76 44
   Dhaf_3879 NONE
   Dhaf_3878 4113218 .. 4113254 - -12.3  -3.01906   TCAACAAAGATCAGA    GAACCCTGGCCCCTC GATTGAT GAGTGGTCAGGGTTC    CTTGCTGCCCTCAGC  93 36
   Dhaf_3874 NONE
   Dhaf_3873 4111721 .. 4111773 - -24.6  -4.57516   ATAGCTAAATGAAAA TTCGGCCGTTTTGCGATGGATTCAT CTAG ATGAGTCCATC-CAAAACGGCCGAA TTTTTAAGCAAAGAA 100 67
   Dhaf_3869 NONE
   Dhaf_3868 4106981 .. 4107039 -   -13    -3.737   TAAGCCTGGACTAAA TGAATTTGGCCGTTTTG-GATTGACTCAT CCAG ATGAGTCGATCTCAAAACGGCCAAATT-- TTATCCCCCCTAGGA 100 35
   Dhaf_3866 NONE
   Dhaf_3865 NONE
   Dhaf_3864 4102955 .. 4102981 -  -2.3  -3.01924   GACTTTTTTCCAACA         GAGTGATGA GCTGTCTCG TCTTCACTC         CTTCACCCCCTTCTT  42 20
   Dhaf_3863 NONE
   Dhaf_3862 NONE
   Dhaf_3861 4100890 .. 4100909 -  -5.6  -2.84015   AAACCGGGATAATGA            CGGAGATC ATAC GCCCTCCG             TAGCCCCGCCGCAGC  53 12
   Dhaf_3860 NONE
   Dhaf_3859 4099367 .. 4099415 - -24.3   -3.5882   GAGACCACCCTTAAA TGCCAAAGCCTTAGAGAGACTG ACATTA CAGTC-CTCTAAGGCTTTGGCA TTTATAATTTTCCAT 100 168
   Dhaf_3855 4096417 .. 4096441 -   -10  -4.70266   AACATGATCCAAAAA          GGGATGCCGG CTTTT CCAACATCCC          CGAACCTTTCATCTA 100 53
   Dhaf_3854 4093826 .. 4093846 -  -2.5   -2.7898   TCCAATATTGAACGA            GACCCCATT CAG AAGGAGATC            CAACACCCACTGAAG  42 96
         def 4093141 .. 4093151 -  -3.2  -3.01712   GTCGCTTTCTTAACA                 TAGC GCA GCCA                 CGGTTCACATGCAGA  44 172
   Dhaf_3852 NONE
   Dhaf_3851 NONE
   Dhaf_3850 NONE
   Dhaf_3849 NONE
   Dhaf_3848 NONE
   Dhaf_3847 4087282 .. 4087294 -  -4.8  -3.03124   TGTCACTCCGTAATA                CAGC ATAAA GCTG                TAAAATTATCGGGTG  50 0
   Dhaf_3846 NONE
   Dhaf_3845 NONE
   Dhaf_3844 NONE
   Dhaf_3843 NONE
   Dhaf_3842 NONE
   Dhaf_3841 NONE
   Dhaf_3840 4079272 .. 4079283 -  -5.8  -4.12942   GTAAATCCCGGAAAA                GCTC CTTA GAGC                 GACCCAAAGAACCCA  68 346
   Dhaf_3838 4077917 .. 4077940 -  -8.2  -3.16881   TATGGACTCGACTAA          CCTTCAGTGG TCCC CCACTGAAAA           GTTGGCTTCGTTCAA  67 37
   Dhaf_3837 4076088 .. 4076111 - -12.4  -4.62783   TATTGATTGTAAAAA          CCCCTCCGGA TGGC TCCGGAGGGT           ATCGTTCATTGCCTA 100 41
   Dhaf_3836 NONE
   Dhaf_3835 4074475 .. 4074491 -  -5.2  -3.40403   GGTTGCCGATCATAA              GAATTC CGCCT GAATTC              TCTGCCCGGTTGGGG  55 3
   Dhaf_3834 NONE
   Dhaf_3833 4071753 .. 4071773 - -11.2  -4.06864   TTTATACAACAAGAA            GAGAGCGA TGACC TCGCTCTC            TTTTGGCTGAATCCA  90 45
   Dhaf_3832 4070642 .. 4070660 -  -8.8  -2.58999   CTCCGATACAGGAAT             TTCACCGG GAG CCGGTGTA             GGAAACCACCGCACG  61 374
   Dhaf_3830 NONE
   Dhaf_3829 4068633 .. 4068645 -  -7.7   -2.9924   GAAACAAGTGAGATA                GTTCC ACC GGAAC                CAGCGGGAATCAAGA  62 35
   Dhaf_3827 4066367 .. 4066380 -  -3.1  -4.62085   ACTTTTAAAAAATAA               CACAA AATT TCGTG                TGAATCTCTCTTTCT  65 98
   Dhaf_3826 NONE
   Dhaf_3825 NONE
        rpmF 4064228 .. 4064244 -    -8  -5.95539   TTTGAAATAAAAAAA              GAAGCC CTTCC GGCTTC              TTTCTCTTGACCTTA 100 38
   Dhaf_3823 4062322 .. 4062341 -  -8.6  -5.28315   AGAAAATGCAAAAAA            GCACAGTC AAAC GACTATGC             CTTAAAATCCAATTT 100 162
   Dhaf_3822 NONE
   Dhaf_3821 NONE
   Dhaf_3820 NONE
   Dhaf_3819 NONE
   Dhaf_3818 NONE
   Dhaf_3817 4056895 .. 4056905 -    -4  -3.53761   CAAGGTTCGCTGAAA                 CTAT TAC ATAG                 CCATGCCGCCGTCTA  52 18
        acpP 4056578 .. 4056607 - -15.1  -3.60948   GAAGAGAGCTTTAAA       GAAAGTCCCGCAG TATT CTACGGGACTCTC        TATGTACTTAGGGGA 100 50
   Dhaf_3815 NONE
   Dhaf_3814 NONE
   Dhaf_3813 4053334 .. 4053365 -    -5  -3.94438   GATTTCAAGAAAACA      GGGAGAGTATCGGC TTTA GCCATTGTTCTCCC       CCCCAAACTCATCTA  61 9
   Dhaf_3812 4049648 .. 4049672 -  -5.8   -4.4874   TTTAAAAAGCCAAAA         GATGC-CCTCT TTAA AGAGAAGCATC          CTCTTCAACTTAACT  73 113
   Dhaf_3811 NONE
   Dhaf_3810 4047715 .. 4047754 - -10.2  -2.86164   AGGAGTAAGGAACCA  TGAGAAAAGCAGGAGC GCATCAAA ACTCCTGCTTTTCTGA   ATTGTATTTTCTAAA  75 47
   Dhaf_3808 NONE
   Dhaf_3807 4044419 .. 4044439 - -13.3  -4.27316   GCGCTCAACCTAAAA            GCAGGGTGA AAA TCACCCCGC            TTTTATTTCACCTTA 100 255
   Dhaf_3806 4043630 .. 4043643 -  -3.9  -2.56122   CTCTACTATAAAATT               CTTTA AGGT TAAAG                TCCTTGTAACTCCGG  44 145
   Dhaf_3805 4041842 .. 4041855 -  -3.9  -2.62425   AATTAACCTCACAAC               TTCTT ACTT AAGAA                TAAGGACAGGATATC  44 195
   Dhaf_3804 NONE
   Dhaf_3803 NONE
   Dhaf_3802 NONE
   Dhaf_3801 NONE
   Dhaf_3799 4035318 .. 4035345 -    -2   -2.5071   GCAACAAGAAATCAT        CTCATTCCCA AACTATCG TGGGAAAAAG         TTACAAAAATGGAGT  39 56
   Dhaf_3798 4034194 .. 4034235 -  -8.9   -5.0133   TATTGCTTGAAAAAA TCAAAGGATACCTCTCTTT ACAA AAAGAGGAGTATCCTTCTA  TCTACCTTATCCCTA 100 38
   Dhaf_3796 4031825 .. 4031866 - -11.5  -4.13945   ATCCTTACCGCAAAA TCGAGAACTCCGCGCCGCA ATGC TGCGGCACGGAGTTTGCAC  GGCAATCCATGACTT 100 60
   Dhaf_3795 NONE
   Dhaf_3794 4030160 .. 4030198 - -14.8   -3.9941   GCCCTCATAAGCAAA  CAGAGTCCTGAATAGCC GGAGGT GGCC-TTCAGGACTCTG   TCTTATCTCCATTCT 100 28
   Dhaf_3788 NONE
   Dhaf_3787 4022406 .. 4022430 - -10.1  -5.38321   AAATATCAGAAAAAA          CTCAAACATCC TGT GGATATCTGAG          TTTTCCTTTAATCAT 100 123
   Dhaf_3786 NONE
   Dhaf_3785 NONE
   Dhaf_3784 NONE
   Dhaf_3783 4017512 .. 4017554 - -16.5  -3.54575   GTGAAAAAAGCAACA TAAAAGACCGCCGAGCAAC CAAAC GTTGCGCAGCGATCTTTTA AAAACCACCTTGATT 100 39
   Dhaf_3782 4015154 .. 4015168 -  -8.5  -5.32944   TCCAGAATGAAAAAA               GCGGC TGTCT GCCGC               TTTTCTATTCTATCG 100 111
   Dhaf_3777 4011873 .. 4011902 -  -9.1  -3.99374   GTGCACCAACAACAA       GACGGCTTCAGGC ATCT GCCGGTCGCCGTC        TGCCAAAGATCGATA  80 74
   Dhaf_3776 4011129 .. 4011149 -  -2.5  -5.13354   TGTACAAAAAAGAAA            CGTTCAG CAAAAGC CTGACCG            TTATTCAAGTCTATG  73 42
   Dhaf_3775 NONE
   Dhaf_3774 4008693 .. 4008726 - -18.3  -3.92324   CCCCGGAACAGCAAA     GGGGCGTTTCCTGCA GTTA TACAGAAAACGCCCC      CGTAAGGTGAGTGGT 100 47
   Dhaf_3773 NONE
   Dhaf_3772 NONE
   Dhaf_3771 4005926 .. 4005971 - -17.9  -2.57132   TGTTTCCGTCACAAT CAAGGACAGAT-CTTAGCTGCT TTC AGCAGCAAAGGATCTGTCCTTA CATTTTCTATAACTG 100 52
   Dhaf_3769 NONE
   Dhaf_3768 4002312 .. 4002342 -  -7.7  -4.40173   AGTATAAATTGAAAA       GAGCTATATTCCA ACAAA TAGAATACAGCCC       CTTTATTCTTCTAAT  79 91
   Dhaf_3767 NONE
   Dhaf_3766 NONE
   Dhaf_3765 NONE
   Dhaf_3764 3998765 .. 3998795 -  -9.1  -2.87274   CCTTACAACCAATGA       TTTAGACCCCCAA TCCAT TTGGAGGTCTAAT       AGCACTAAGCTCGTT  67 30
   Dhaf_3763 3997420 .. 3997430 -  -2.6  -3.55043   TAATGAAGGAAAAAT                 TATA TTT TATA                 GAATTTAAAAAATCT  48 39
   Dhaf_3762 NONE
   Dhaf_3761 3995470 .. 3995492 -  -2.7  -2.82516   CTCCTCACCAGGATA           CTTATCACC TTGCG GAAGATAAG           CGAACTAGAAAATTA  42 38
        rpsP 3995174 .. 3995190 -  -2.3  -3.63991   GAGCACCCCCAATAA              TCCAA TTACTTC TTGGA              CTCATGGTACTTAGC  49 14
   Dhaf_3759 3994902 .. 3994914 -  -9.1  -4.67234   ACCTAACGTCAAAAA                GGGCT TAA AGCCC                TTCTCAACACATCAC 100 37
   Dhaf_3758 NONE
        trmD NONE
   Dhaf_3756 3992185 .. 3992196 -  -2.2  -4.17309   TATCACAAACAATAA                GCTG AGTG CAAC                 TTTAAAAATTAAAAA  55 105
        rplS 3991697 .. 3991716 - -11.4  -4.84311   TTGTATATAATAAAA            GGGCCGGA TAGC TCCAGCCC             ATCTTATTGCTAGCG 100 35
   Dhaf_3754 NONE
   Dhaf_3753 3989901 .. 3989912 -  -4.4  -2.74853   GAAATTTAAATCAAC                TCTC ATTT GAGA                 TTATTATAAGCTATT  46 36
        rnhB NONE
   Dhaf_3751 NONE
   Dhaf_3750 NONE
   Dhaf_3749 NONE
   Dhaf_3748 NONE
   Dhaf_3747 NONE
   Dhaf_3746 NONE
   Dhaf_3745 NONE
   Dhaf_3744 NONE
   Dhaf_3743 NONE
   Dhaf_3742 NONE
   Dhaf_3741 3979042 .. 3979065 - -13.2  -4.25104   GGCCCCTTACGAAAA          GAGCCTCAGC ATAA GCTGAGACTC           TCTTAAAAGACATTA 100 48
   Dhaf_3740 3977799 .. 3977813 -  -2.9   -3.9777   TTTAACAGCCAGAAA               TGTAA TCAGG TTACA               GAGTACTAGATACCG  54 31
   Dhaf_3739 NONE
   Dhaf_3738 NONE
   Dhaf_3737 NONE
   Dhaf_3736 3973034 .. 3973049 -  -3.3  -3.96483   AGCGCACGCAAAGAA              GAAAG ACCGTA CTTTC               ACAATCCCTCCTTTT  56 212
   Dhaf_3735 NONE
   Dhaf_3734 3969354 .. 3969402 -  -8.8  -3.06046   ATGACAAGCAGAAAT TGCAGACGGCTGAAGAATAGGG TCATC CCCTGCTCTCCAGCCGTTTGTT TTTTGCCTATCTCTT  68 53
   Dhaf_3731 NONE
   Dhaf_3730 NONE
   Dhaf_3729 3964219 .. 3964270 -  -4.6  -6.11243   ATTTAATAAAAAAAA TGCTCCGCCAACC-CAGTCAGGTT AGTAAA AACCC-ACTGCAGTCAGAGGAGCA CATCTCTATCCAATA 100 85
   Dhaf_3728 NONE
   Dhaf_3727 NONE
   Dhaf_3726 NONE
   Dhaf_3725 3960021 .. 3960062 - -23.3  -2.74488   CAAGGACGGTAATGA GGGCTCGTAAGATTCGAAT CCAG ATTCGAATCTTGCGAGCCC  CTTTCTAAATGCCGG 100 45
   Dhaf_3723 3958474 .. 3958484 -  -6.8  -3.09831   GGTATTTTAAAAGCA                 CTGG GGG CCAG                 AAAAAAGGATATTAC  57 302
   Dhaf_3721 3955346 .. 3955358 -  -2.7  -4.52949   TGGCCAAAAAAAACA                CTTGT TAG ACAAA                TTTCTGCCATACAAG  61 266
   Dhaf_3720 3954527 .. 3954541 -  -2.8  -3.39187   AATATTTAATAGTAA               GCTAAA TTA TTTGGC               AGCTTTTGCAGCATC  46 17
   Dhaf_3719 NONE
   Dhaf_3718 NONE
   Dhaf_3717 NONE
   Dhaf_3716 3948444 .. 3948468 - -13.7  -3.89346   CCTGCAGCGGAGAAA          GGTTGGAAACA GGA CGTTTCCAACC          CGCCACTGAGCAGGA 100 150
   Dhaf_3715 NONE
   Dhaf_3713 NONE
        hslU 3942812 .. 3942828 -  -2.3  -2.76696   GTTTTTTCCAATAAG              TTTTTCA TGG TGAAAAT              TCCTCCTATTATTTA  41 62
   Dhaf_3711 NONE
   Dhaf_3710 NONE
        rpsB 3940569 .. 3940584 -  -3.2  -2.52775   TTTACATAAAAGGAG              CAGGAT GAGC ATCCGG               GAAGCTTAACCAACC  42 93
         tsf 3939822 .. 3939841 -  -8.6  -4.58395   CTGACGGTGTAAAAA            GAGAACAC CTAA GTGTCCTC             TAATTGCTTACCTTA  91 38
        pyrH NONE
         frr 3938418 .. 3938442 - -11.5  -3.65425   CTTAGAGAGGGTAAA          GACCCCCTT ATGTTTA AAGGGGGTC          AGAGCCACTGGAAAT  90 40
   Dhaf_3705 NONE
   Dhaf_3704 NONE
   Dhaf_3703 NONE
   Dhaf_3702 3934520 .. 3934538 -  -5.3  -3.21934   TCTTCTTTAGAAAAG             CAATGCG TACTC CACATTG             AATGTCCGTCGCTTC  53 40
   Dhaf_3701 NONE
   Dhaf_3700 NONE
   Dhaf_3699 3930464 .. 3930492 - -10.2  -4.85782   TGGTTGAAAAATAAA        CCGGGAGATGCC TTTAC AGCTCCTCCCGG        TCATACCGCTCATAT 100 60
   Dhaf_3698 NONE
   Dhaf_3697 3929723 .. 3929742 -  -2.8  -5.14163   ACCTACCAATAAAAA            TCATCAGC TATT GCTGATAT             CTACATGCAAGCAAA  73 155
   Dhaf_3696 3929068 .. 3929090 -  -6.2  -3.68798   TTTTAAAATAATCAA           GGCAGCGCAA GAA TTGATCTGCC           CCTGCCTTTTTGATC  63 76
   Dhaf_3695 NONE
   Dhaf_3694 3926694 .. 3926731 -   -23  -3.81488   TTTGCTTAAATATAA   TAGAACCCCCTGCCAT TCATTG ATGGCAGGGGGTTCTA    AACCAACCGTTAAAA 100 156
   Dhaf_3693 3926004 .. 3926029 - -12.1  -3.93963   AGCAGCATTTACAAA         GAAATTACCAA CCAA TTGGTAATTTC          GCCACTTCATTCTCC 100 32
   Dhaf_3692 3924433 .. 3924462 - -14.5  -4.08706   CGCCGACGACATAAA       CTCAAATGGTGCA CCGT TGCACCATTTGAA        CTACAGGCACATGGT 100 139
   Dhaf_3691 3924192 .. 3924221 -  -2.1  -3.53444   GCACCCCGGCTGAAA       GATATGGAAAGTA TCTA TTCTTTCCCTTTC        TTACCCTTTAAAAAA  47 10
   Dhaf_3690 3923381 .. 3923405 -  -8.5  -5.47399   TCAATGGTAAAAAAA          CAATCCGCCCC GTT GGAGCGGATAA          CAGTTTATTTCATTG 100 138
   Dhaf_3689 NONE
   Dhaf_3688 NONE
   Dhaf_3687 3921331 .. 3921343 -  -5.5  -3.13511   AATATGAGCTAAAAG                CGTCC CCA GGACA                ATTATTCCGGTCTGT  53 72
   Dhaf_3686 3919981 .. 3920011 -    -4  -4.08767   TCTAGCCCTTCAAAA       GCAAGCAATTTTCC ATA AGAACATCGCTTGT       AGAGAAAATCAGCAA  61 339
   Dhaf_3685 NONE
   Dhaf_3684 3918332 .. 3918375 - -24.2  -4.87052   GAGAAAGTAACAAAA GTACTTTCCCACTGTCACCC TAAA AGGTAACAGTGGGAAAGTAC TTTGCGCGCCCTATA 100 79
   Dhaf_3682 3916944 .. 3916974 -  -4.8   -3.4529   ACATCATCATTATAA       GCTTTTTTGATCTA TAG TAAAACACAAAAGC       CGCAAGGCCAATTAA  55 81
   Dhaf_3681 3915688 .. 3915708 - -11.2  -4.33487   ACAAAACAAAGGAAA            GAGTGGGT TCAAG ACCCACTC            CTCTTCGGCTGCAAT 100 115
   Dhaf_3680 3915130 .. 3915141 -    -3  -2.62184   TTCCCCCTTATATTA                TGTT CCAA AACA                 TATCACTACACTAGA  42 36
   Dhaf_3679 NONE
   Dhaf_3678 NONE
   Dhaf_3677 NONE
   Dhaf_3676 NONE
        rbfA NONE
   Dhaf_3674 NONE
   Dhaf_3673 NONE
   Dhaf_3672 3906798 .. 3906809 -  -3.6  -3.24245   CGACGGAGAACGCAA                GCCC GAGC GAGC                 GGTTCTCATGTATTT  49 71
        rpsO 3906411 .. 3906435 - -10.1  -5.29782   GATACGTATAAAAAA          GAGAGACAG GAATAGT CTGTCTCTC          TTTTCTCTCCATTTT 100 58
   Dhaf_3670 3903960 .. 3904011 -  -8.3  -3.94933   GGAATTTTAAAAACA TACATTCGTCTACCCCCTTCCAT TTAGATGT ATGCAAGGGGG--GACGAATGCA GAATAATTGAGGCTA  77 48
   Dhaf_3669 NONE
   Dhaf_3668 NONE
   Dhaf_3667 NONE
   Dhaf_3666 NONE
   Dhaf_3665 NONE
   Dhaf_3664 3899614 .. 3899641 - -15.8  -3.69333   GATAAGTCAGCTAAA        CTGTAGATAGAG GCCG CTCTATCTACAG         TAAGCTTCCTTTATT 100 20
   Dhaf_3663 NONE
   Dhaf_3662 NONE
      spoVFB 3897015 .. 3897046 - -10.2   -3.3341   ATAAAATACTAGGAA      TATGGTGCTAAGCC TGAA AGCACAGCACCATA       TCCACCTAACTGATC  78 53
   Dhaf_3660 NONE
   Dhaf_3659 NONE
   Dhaf_3658 3893634 .. 3893667 - -12.7  -5.09685   CAAGAGATAGAAAAA     GCAGAAATTCAATCT AAAA AAATTGAATCTCTGC      CTTTCAATAATTACC 100 76
   Dhaf_3657 3891614 .. 3891658 -  -8.8  -4.93547   GTAATTAATTAAAAA CGAAGTGTTG-CAATCTACCC GTCA AAGTAGTTTGGCAACACTTCA TTTTAGCAATGGATC 100 41
   Dhaf_3656 3889513 .. 3889546 - -16.9  -3.32022   GGGGGCACACAGCAA     GAGGCGTATCGAAAC CTTA GTCTCAATACGCCTC      TTAATATAAAGTATT 100 47
   Dhaf_3655 3887858 .. 3887869 -    -3  -3.54424   TGCTATCCTTGTAAA                GTTT TTTT AAAC                 ATTGGCACTCACAAT  49 20
   Dhaf_3654 NONE
   Dhaf_3653 NONE
   Dhaf_3652 3883075 .. 3883089 -  -5.7  -3.04144   TTTTTATTTCCAATA               GAACG GACTT CGTTC               AGCGGAATACTCTGC  54 59
   Dhaf_3651 3882118 .. 3882159 - -18.2  -3.01791   ACTTGTCCTTGAACA CCTCTGCTTCAGATGGAG TTTAAG CTCCATCTGAAGCAAGGG  TACGGATTTCCAGAG 100 50
   Dhaf_3650 NONE
   Dhaf_3649 NONE
   Dhaf_3648 NONE
   Dhaf_3647 NONE
   Dhaf_3646 3876981 .. 3876995 -  -8.5  -3.07443   CGAGATTCCATTCAA               GGGGG ATTCG CCCCC               CACTGATGATGAGCT  67 70
   Dhaf_3645 3875572 .. 3875613 -  -8.2  -4.23758   ATCTGAGACTTAAAA GAGAGTGCCGAAAAAGCTAT TTTA ATAGCTTG--CGGCACTCCC TTACTTTCAGCAACT  79 150
   Dhaf_3644 NONE
   Dhaf_3643 NONE
   Dhaf_3642 NONE
   Dhaf_3641 NONE
   Dhaf_3640 3865825 .. 3865856 -  -7.2  -4.53439   TTAAACGCAAATAAA      GCAGGCGACCTGTT AAAT ACCAGGCAACCTGC       TTATCCTGTACCATT  78 75
   Dhaf_3639 3864516 .. 3864558 -  -9.3  -5.27938   ACGGTTAAAGAAAAA CTCCCCTGATCGTAGTAAGA ATCC TCTTGCTACT-TCAAGGGAG TCTGGATTGCCAAAT 100 55
   Dhaf_3638 3862656 .. 3862689 - -21.3  -3.38768   GGAGAGCACTTACAA     GGAAAAGAAGCGAGT TGTC ACTCGCTTCTTTTCC      TTAACCTGTCAAAAT 100 54
   Dhaf_3636 3859742 .. 3859754 -  -3.4  -2.73275   TAGCTATACACATTA                TGAG CACCT CTCA                TTCCCTATCAATATT  42 10
   Dhaf_3635 NONE
   Dhaf_3634 NONE
   Dhaf_3633 NONE
   Dhaf_3632 3856879 .. 3856911 - -16.4  -4.19336   AATCATTGCAACAAA     GGGAGGCCGC-AACT GCTT AGTCAGCGGCCTCCC      TTATTACTTCCTTAC 100 51
   Dhaf_3629 3853947 .. 3853978 - -15.3  -4.92812   CTATAAGAAAACAAA      GAGTTCTGCACCG ATGACA CAGTGCAGAACTC       TTGATCACTGAAAGA 100 79
   Dhaf_3628 3852720 .. 3852760 -  -2.6  -4.14004   TAATATAAGCATAAA CGCCTTCCTTTC-TCTCTT GATT AAGATTCGACAGGAAGACG  ATTTATTCCTTGTGG  57 86
        ruvC NONE
   Dhaf_3626 3851584 .. 3851599 -    -4  -3.56092   TCATCATCCTTCAAA              GGGCATG CCT CAT-CCC              TCAAAGGGCGCTATA  52 43
        ruvB 3850387 .. 3850445 -  -3.3  -3.94812   CTTTACGGAAAAAGA CAATCTGTCTGACAAAGGCAGCAAATT CAACC ACCTCACTACTCTTTTCAAACAGATTG CCCGTTTCAGGTTTT  56 84
   Dhaf_3624 3848970 .. 3848989 -  -2.2  -4.13767   TCGGGCAGCTCAAAA            TCGAAATC TTCT AATTTCAA             AATGATTCTCCTTTT  55 67
        queA NONE
   Dhaf_3622 3846829 .. 3846839 -  -2.6  -2.62192   GCTTATTGAACGAAT                 TATT TCA AATA                 TCCATACTCATAGAA  41 14
   Dhaf_3621 3846305 .. 3846332 -   -10  -4.01419   TAGCAACCAATGAAA        TAAGCAAGCAGA TACT TCCACTTGCTTA         TTCGTTCCTCTATAT  86 76
   Dhaf_3620 NONE
   Dhaf_3619 3844787 .. 3844799 -  -4.1  -3.57462   TATCGTAGTTTTAAA                GAAGC TTA ACTTC                ATTGATTTTAAGTTC  54 8
   Dhaf_3618 3842414 .. 3842433 -  -9.3  -5.06414   CCGGTGTAATAAAAA            TTCCGGG AGCCAG CCCGGAA             TTTTTAGGTTTATAT 100 63
   Dhaf_3617 NONE
        ilvH 3840051 .. 3840080 - -16.7  -4.70659   TCCGACATTTAAAAA       GCCAAATTACCAA CCGA TTGGTAATTTGGC        TTAACTATCATTCCG 100 43
   Dhaf_3615 NONE
   Dhaf_3614 3838742 .. 3838752 -  -2.6  -2.64155   CCTCCTTTAAATTCA                 TAAA ATC TTTA                 GAATACGATACCCAT  41 23
   Dhaf_3613 3838540 .. 3838559 - -11.4  -4.64657   GCAAAGTGCGAAAAA            GCCCCCTC GAAT GAGGAGGC             TCACTGTGCAGATCT 100 48
   Dhaf_3612 3837568 .. 3837586 -  -8.9  -4.99638   ATAGTGATATAAAAA             GGACTTC CCAGT GAAGTCC             TCCATCCGAGCCGCT 100 122
   Dhaf_3611 NONE
   Dhaf_3610 NONE
   Dhaf_3609 NONE
   Dhaf_3608 NONE
   Dhaf_3607 3831124 .. 3831135 -  -7.2  -4.62069   TTTTCATTGCAAAAA                CGGG TTTT CCCG                 CTTTTCCCTCCCGAT  81 2
   Dhaf_3606 NONE
   Dhaf_3605 3828017 .. 3828053 -  -4.6    -4.386   TAATTGCGCATAAAA   GCGTGTTG-GGAT TGCATAGTGAGT ATCCGCAACACGC    TTTTACCATACGGCA  66 91
   Dhaf_3603 NONE
   Dhaf_3602 3824212 .. 3824222 -  -2.6  -3.32348   AAGTTCAGATAAAAG                 TTTT ATT AAAA                 TTCAAGCCGTTACAA  46 35
   Dhaf_3601 3823529 .. 3823547 - -13.2  -5.40072   GTGGTTGCAAAAAAA             GCTCCTGA AAA TCAGGAGC             TCTCCGGCAGGTCTT 100 18
   Dhaf_3600 3822649 .. 3822670 - -12.3  -4.56597   TGCTGCGTCCAAAAA           CAGGCAGCC CTAA AGCTGCCTG            TCCAATCATAATTCT 100 69
   Dhaf_3599 3822084 .. 3822117 - -19.1  -4.80882   AGTGCATATGAAAAA     CAACCGCTGCCCTGAA TGA TTCAGGGCAG-GGTTG     TCTGGCCGTTTATAT 100 128
   Dhaf_3598 NONE
   Dhaf_3597 3819934 .. 3819970 -  -3.8  -4.99035   TTAGTGATACAAAAA   GAGACAT-CCATGAGGAG TTC CACC-CATAGTATGCCTC   TATAATTACCAATTT  73 116
   Dhaf_3596 NONE
   Dhaf_3595 NONE
   Dhaf_3594 3816162 .. 3816200 - -12.5   -4.4078   CTCTGCTAATCAAAA  GAACCCCCGCC-CTTGCC CTAA GGCAAGAGGTGAAGGTTC   TCTACTCTTGATTCT 100 58
   Dhaf_3593 NONE
   Dhaf_3592 NONE
   Dhaf_3591 3812803 .. 3812831 -  -7.6  -5.74122   CACTATACAAAAAAA       GATCGGA--GTACC CTC GGTACCCTCCGATC       TTTTTTTGTATGCCT 100 263
   Dhaf_3590 NONE
   Dhaf_3589 3811914 .. 3811938 - -15.9  -4.93547   GCAACGAAGCAAAAA          TAAGATCGGAG CAG CTCCGATCTTA          TTTTTTCATATTAAG 100 51
   Dhaf_3587 NONE
        aspS 3808070 .. 3808096 -  -3.8  -3.10597   TTTGCTATTTAAAAT         TCAGATGGAA TGTATTG TTCCATTTGA         TATCATTATATTATT  48 36
   Dhaf_3585 NONE
   Dhaf_3584 3807235 .. 3807252 - -12.7   -5.1244   TGATTAATACAAAAA             CGGTGCC GAAT GGCACCG              TTTTGATCTTCCTTA 100 73
   Dhaf_3582 NONE
   Dhaf_3581 NONE
   Dhaf_3580 NONE
        mnmA 3802219 .. 3802236 -  -8.5  -4.72272   GTTCTTTATCAAAAA             TACCGTT GAAT AACGGTA              CCTGTCCCTGTTATT  91 40
   Dhaf_3578 NONE
   Dhaf_3577 NONE
   Dhaf_3576 3801165 .. 3801200 - -15.6  -3.80733   CCGACTGTACAAGAA    GAGCGTAAGCCCGGCAT GCC AT-CCGTGCTTACGCTC    TTATCTTTCCCTGAA 100 84
   Dhaf_3575 3799902 .. 3799946 - -11.6  -4.36914   TTTCCTCCCACAAAA TCCAAAACCTCCCTATACCTT CAAT ATGGTGCAGGGAGG-TTTGGA TTTCATTTCATCTCA 100 28
   Dhaf_3571 NONE
   Dhaf_3570 NONE
   Dhaf_3569 3796046 .. 3796083 - -15.3  -3.26042   TGAGTTAAAAATAAG   CAAAATTAAATGCTAGT TGTA ACTAGCATTTAATTTTA    TGATTGATGATTAGC 100 41
   Dhaf_3568 3794568 .. 3794581 -  -2.3  -2.98607   TCCAAAGAAAGACCA               GGCAA CAGA TAGCC                CTTTTCCACATTTTT  42 53
   Dhaf_3567 3793557 .. 3793570 -  -4.5  -3.84719   AGGGTTAAAGCCAAA               GACGA ATCA TCGCC                GACCCCGATTTCGCT  59 291
   Dhaf_3566 3790536 .. 3790577 - -15.3  -4.14739   TCATTCACTCCAAAA CCTGTCCAAGAACACGACA ACGT TGTCGCGTTCTTGGACATC  CTTTGTGTACGGCCC 100 41
        alaS NONE
   Dhaf_3564 3787158 .. 3787185 -   -15  -2.87132   TCCCTTTCTCACACA        GAAACCCTCACC TTGA AGTGAGGGTTTC         CTAAAAATTACTTCT 100 33
   Dhaf_3563 NONE
   Dhaf_3562 NONE
   Dhaf_3561 3785272 .. 3785304 -  -7.8  -5.95286   AGCAAAAATAAAAAA     GCAGCCG-ATTCGAT ATTC ACCGAACCCGACTGC      TTTAAACAGCTGGTT 100 42
   Dhaf_3560 3783778 .. 3783809 - -20.3  -3.17212   TTATCACTGGATTAA      CCTTCAGTGGGGG GTGAAT CCCCCACTGAAGG       ACGTTCCGTTCAATG 100 91
   Dhaf_3559 3782568 .. 3782580 -  -3.4  -2.79273   TTGCTCTAACATAAC                GGTT CTTTC AACC                TCTCTGTATTCAATT  43 153
   Dhaf_3558 NONE
   Dhaf_3557 3780928 .. 3780939 -  -4.4  -3.20573   CCATTCACATTAATA                GTAC ATTT GTAC                 TTATTCTAAGTCAAT  49 70
   Dhaf_3556 3780297 .. 3780317 - -10.5   -4.4891   GCCAGTATGACAAAA            GGGTGTTTA GCG CAAACACCC            TCTTGTCACGATATC 100 48
   Dhaf_3555 3778423 .. 3778433 -  -3.2  -2.78798   ACTTTGTACTTAAAC                 CGCA TCT TGCA                 CCCCCCGCAAGGAGG  43 63
   Dhaf_3554 NONE
   Dhaf_3553 NONE
   Dhaf_3552 NONE
   Dhaf_3551 NONE
   Dhaf_3550 NONE
   Dhaf_3549 NONE
   Dhaf_3548 NONE
   Dhaf_3547 3772120 .. 3772134 -  -4.2  -6.22802   CGCTACAAAAAAAAA               TGACCC TTC AGGCCA               TTTTTCAATGCAAAT 100 58
   Dhaf_3546 3771126 .. 3771147 -  -4.3  -5.36441   TTTTTATATAAAAAA           GCCCTCAGA AAAT TCTTTGGGC            TCATTTGTCTTTATA  81 90
   Dhaf_3545 NONE
   Dhaf_3544 NONE
   Dhaf_3543 3767679 .. 3767701 -  -9.1  -4.51743   CTATCATTAAAGAAA           GCTGCCCTA AATCA TCGGGCAGC           TTTATGCTTTACAGG  93 89
   Dhaf_3542 NONE
   Dhaf_3541 NONE
   Dhaf_3540 3765820 .. 3765830 -  -2.4  -5.24129   TTTTCGGAGAAAAAA                 TCGG TGT CCGC                 CATAAGGGCCGATAA  71 78
   Dhaf_3538 NONE
   Dhaf_3537 NONE
   Dhaf_3536 NONE
   Dhaf_3535 NONE
   Dhaf_3534 NONE
   Dhaf_3533 3759922 .. 3759940 -   -11  -5.77988   AGAGATATAAAAAAA             CCACGACT CAT AGCCGTGG             TTTTCCCTTAATTTG 100 53
   Dhaf_3532 3759355 .. 3759371 -  -2.9  -2.78463   ACCCTTTTCATTATA              GTCATTC ATG GGACGAC              TTTGCCTCCCTCATC  42 14
   Dhaf_3531 NONE
   Dhaf_3530 3758418 .. 3758430 -  -7.7  -3.22756   GAATAAGGATTAAGA                GGGTA ATA TACCC                TGATTCACCCCGCCC  63 7
   Dhaf_3529 NONE
   Dhaf_3528 NONE
   Dhaf_3527 NONE
   Dhaf_3526 NONE
   Dhaf_3525 NONE
   Dhaf_3524 NONE
   Dhaf_3523 NONE
   Dhaf_3522 NONE
   Dhaf_3521 3750006 .. 3750026 -  -7.6   -5.9873   TCACGACAAAAAAAA            CGTAGAGA TTAGC CCTCTACG            GTGGTCTTTCCCTAC 100 110
   Dhaf_3520 3749443 .. 3749456 -  -6.7  -3.10905   GGATAAGTCAGCTAA               GCTTG TGAA CAAGC                AAGCTTCCTATATAA  59 51
   Dhaf_3519 3748694 .. 3748739 -    -7  -5.60689   TCATACAATAAAAAA CCCCCTCT-GGTACACCTTTT CTAAC AAAAGGTTTCCCTAAAGGAGG CATTATGATTCGGGA 100 62
   Dhaf_3518 3746924 .. 3746958 -  -2.1  -4.57275   GAAAAAAAGTTAAAA    GAGACCCGAC-CGCCC ATTT AAGCTTATCGAGTCTC     TTACTTATCACAACA  60 91
   Dhaf_3517 3746721 .. 3746737 -  -2.9  -3.65902   TTTATGGGATGTAAA              GTATAGC GCA GCGACAC              GGCATTGTCCCCCTT  50 71
   Dhaf_3516 NONE
   Dhaf_3515 NONE
   Dhaf_3514 NONE
   Dhaf_3513 NONE
   Dhaf_3512 NONE
   Dhaf_3511 NONE
   Dhaf_3510 3742128 .. 3742140 -  -3.3  -2.63102   ATGACTTTCATAGTA                CCCCT CCC ATGGG                CTGAACATTGATCTT  42 5
   Dhaf_3509 3741448 .. 3741458 -  -2.6  -2.77787   AATATCACGCCAAAG                 TATA CAG TATA                 ACCTTCGAGATCGGA  42 121
   Dhaf_3508 NONE
   Dhaf_3507 3738041 .. 3738063 -  -8.6  -2.86806   ATTAATCCATAAGTA           TCTTTTGTCA TTA TAACAAAAGA           AGACCATGCTGGCAA  64 56
   Dhaf_3506 NONE
   Dhaf_3505 NONE
   Dhaf_3504 NONE
   Dhaf_3503 NONE
   Dhaf_3502 NONE
   Dhaf_3501 3733154 .. 3733195 - -14.7  -3.66178   TTGGGGAATTTGAAA CAAAGCAAGCCT-CCGGAGA GCT TCTCCAACAGGCTTGCTTTA TTTCTGGCCTACTAT 100 74
   Dhaf_3497 NONE
   Dhaf_3496 NONE
   Dhaf_3495 3728209 .. 3728257 -  -6.8  -4.26019   CAACCATACTTAAAA TGGGAGCGTCAC-CGGCTGCTTT AAAT AAAACAGTTTTGTGACACTCCCA TGCTTAAACAACTAT  74 123
   Dhaf_3494 3726955 .. 3726969 -  -9.2   -5.1166   GAGGAAAAGCAAAAA               GGGAGG TCT CCCCCC               CTATCAGAACATTTT 100 29
   Dhaf_3493 NONE
   Dhaf_3492 3725406 .. 3725418 -  -3.4  -3.04755   TGAAACATCAAATCA                TCCT TCCAC AGGA                AAATCGGCCGGGCGT  44 10
   Dhaf_3491 NONE
   Dhaf_3490 3724056 .. 3724067 -  -2.2  -3.07962   GCTTATATCCCAACA                GTGA CCCT CCAC                 ATCATGACCTTACAT  43 35
   Dhaf_3489 NONE
   Dhaf_3488 NONE
   Dhaf_3487 NONE
   Dhaf_3486 NONE
   Dhaf_3485 NONE
   Dhaf_3484 NONE
   Dhaf_3483 3717177 .. 3717199 -  -5.6  -5.99154   TACCAAATAAAAAAA           TAGAAGGCCA AAT TCACCTTCTA           TTCTATAAAATCTCC 100 65
   Dhaf_3482 3715717 .. 3715750 - -15.5  -4.44448   ATTATTTTAAAGAAA     GACTTCCATTGAGAC CGCC GTCTCAATGGAAGTG      CCAAAACTCATTGTT 100 48
   Dhaf_3481 3714613 .. 3714650 -  -9.3  -4.98255   TTTTAACCATAAAAA   CACCCTCCCAATCAATA GTCT TATTGATAAAAAGGGTG    ATTTATTTACAGCAT 100 32
   Dhaf_3480 NONE
   Dhaf_3479 3713221 .. 3713245 - -15.1  -5.21709   CGGGACAGGAAAAAA          CGGTGGCTTCA ATC TGAAACCACCG          TCAAACTATGCTGCT 100 41
   Dhaf_3478 NONE
   Dhaf_3477 3710512 .. 3710542 - -14.1  -4.40963   ATCGGGCAAAAAGAA       GCAGCCCAAGG TTCAAATGC CCTTGGGCTGC       ACTTCTGTACAGGAC 100 63
   Dhaf_3474 NONE
   Dhaf_3473 NONE
   Dhaf_3472 NONE
   Dhaf_3471 NONE
   Dhaf_3470 NONE
   Dhaf_3469 3702814 .. 3702862 -   -17  -3.71848   TTGTCTTATTAATAA CAATAACCAACAACCAAGAAGG TGTTC CCTTCAGAGTTGTTGGTTATTG CTTTATTATTTTGCC 100 51
   Dhaf_3466 NONE
   Dhaf_3465 3697689 .. 3697710 - -15.1  -5.68023   TTATAAGCAAAAAAA           GCGGACGGC TGCA GCCGCCCGC            GCAAACGTTCCTATC 100 40
   Dhaf_3464 NONE
   Dhaf_3463 3695762 .. 3695798 -  -2.2  -2.65815   TCTATAGCCACACCA   TGGCTCCCGGCACACTG GAAT CA-TGTGCCGACATCCT    CTATAGACATCCTAT  40 49
   Dhaf_3462 3695046 .. 3695058 -  -4.8  -6.41881   CACAATAAAAAAAAA                TGCC GGGAA GGCA                GCCGACCTGTATCCC 100 101
   Dhaf_3461 NONE
   Dhaf_3460 3694297 .. 3694312 -    -4  -4.56597   TCCTCCTTCTAAAAA              GTTAGC ATCA ACTAAC               TATGGGTCAAAAAAA  66 52
   Dhaf_3459 NONE
   Dhaf_3458 3691847 .. 3691872 - -11.2  -4.78107   TAGCATTATGAAAAA         GCCGCTGACTG ATACA CAG-CAGCGGC         TTTCGTTATAATGTT 100 60
   Dhaf_3457 3691274 .. 3691317 - -26.2   -4.2803   GATGTTAATTTAAAA GGGCCGCTGCTCAACGAACT ATAC AGTTCATTGGGCAGCGGCCC TTTGTACACACAACA 100 48
   Dhaf_3456 NONE
   Dhaf_3455 NONE
   Dhaf_3454 NONE
   Dhaf_3453 NONE
   Dhaf_3452 NONE
   Dhaf_3451 3684507 .. 3684519 -  -6.3  -2.54015   AAAGTTCTACAAGAG                GGAAA GGT TTTCC                TGCGGGTTTAAACCG  53 49
   Dhaf_3450 3683509 .. 3683522 -  -5.2  -2.74741   ATCACATCTTAATCA               GCCC GGGGAT GGGC                TTTGCGGAATACTTC  50 5
   Dhaf_3449 3682060 .. 3682082 - -11.4  -4.40358   ACGCAGCGGAGAAAA           GTTGGAAACA GGA CGTTTCCAAC           CGGCTATGAGAACAA 100 184
   Dhaf_3448 3680482 .. 3680495 -  -4.5  -3.02144   GTATGTTCCTGAAGA               GCAGC CAAA ACTGC                CCAAAGCTCCCCATA  50 60
   Dhaf_3447 3679093 .. 3679122 - -20.1  -3.62032   ACAGGAACTTGCAAA       GAACCCTGGCCAC AGTC GCGGCCAGGGTTC        TCTCGTTTATACTTA 100 64
   Dhaf_3444 3677646 .. 3677691 -   -15   -4.2408   TTATAAAATTATAAA GAAAATAGCCACAACCTGGT GCTGTT ACCAAGTCATGGCTATCTTC TTTTTTTCAGTTGCT 100 54
   Dhaf_3443 3676175 .. 3676203 -  -3.8  -4.07568   CGGTTGGTTTGAAAA        GATTGCCCTGAA AGAGG TTCTGGACAAAC        TCCCTGAACGGGAAA  60 186
   Dhaf_3439 NONE
   Dhaf_3438 NONE
   Dhaf_3437 NONE
   Dhaf_3436 NONE
   Dhaf_3435 NONE
   Dhaf_3434 NONE
   Dhaf_3433 3667462 .. 3667496 -  -4.1  -4.82667   CTATGACATGAAAAA     GGCTTGGGCATGGTT TTCTT ATCCCAGCACAAGCC     ACTCTCTCTACTTCG  71 439
   Dhaf_3430 NONE
   Dhaf_3429 3665141 .. 3665170 - -17.3  -3.43618   AAGGAACACCCATAA       GCAAAGCACCTCG CGAA CGAAGTGCTTTGC        AGATTTCCTGTGTAT 100 40
   Dhaf_3428 NONE
   Dhaf_3427 NONE
   Dhaf_3426 NONE
   Dhaf_3425 NONE
   Dhaf_3424 3659352 .. 3659393 -  -4.6  -4.92314   ACGAATTTAGAAAAA GGAGTATCGC--CACTACAT AAAA ACGTAGTTTTGCGACACTCC CTTGTTACTCACAAT  77 30
   Dhaf_3423 NONE
   Dhaf_3422 3657893 .. 3657934 - -19.7  -4.42788   TTCAACTTCATAAAA GGCCTGTTCAAAATCGACA ACGT CGCCGATTTTAAACAGGCC  CAACCGTATTGGGTT 100 151
   Dhaf_3421 NONE
   Dhaf_3420 3656299 .. 3656321 -  -9.2  -5.56263   AGGATAAAACAAAAA           GACGTTCCCA TCA TAGAAACGTC           TCAACCTGCAGGCAA 100 71
   Dhaf_3419 NONE
   Dhaf_3418 3653308 .. 3653324 -  -5.1  -4.13246   CATCCGAGATATAAA              CGGTATG GGC CATACAG              TTTTCCTGCCTTTCC  65 133
   Dhaf_3417 NONE
   Dhaf_3416 3651549 .. 3651560 -  -5.8  -4.00469   TCAAGATGAATCAAA                GGGA CAGG TCCC                 GTTTTTCACATGTGC  66 223
   Dhaf_3415 NONE
   Dhaf_3414 3650314 .. 3650347 -  -6.9  -5.29716   GCAACACAACAAAAA     GCATACTAAGG CCTCCTTATCCT CCTTAGTATGC      TCATGAACCGCTTTA  89 38
   Dhaf_3413 NONE
   Dhaf_3412 NONE
   Dhaf_3411 3647196 .. 3647215 -  -7.9  -3.70511   AATATGAGGTAAGAA            CAGGACA TTTTCT TGTCCTG             ATCACCACCGAGCAG  68 160
   Dhaf_3409 3646058 .. 3646082 -  -7.9  -5.54264   AAATAGGCAAAAAAA          TAAACCCAGTC CTC AACTGGGTTTT          AATTTACTGAAAGCG 100 29
   Dhaf_3408 3644225 .. 3644246 - -14.5  -4.66537   GTTCTCAACAGAAAA           GGAAGGGGA TGGC TCCCCTTCC            CTTCAGGCAATCTTG 100 66
   Dhaf_3406 3640577 .. 3640605 - -13.3   -3.6393   TCCACTATAGAAAGA        GATGGGAAGTAGT TTA ACTACTTCCCATT        ATTGATTCATAATAT 100 93
   Dhaf_3405 3639842 .. 3639859 -  -5.7  -2.87881   TAATTTCCCTACACA             TTATTAC TGGA GTAATAA              TTCATAAGCCGTCTC  53 1
   Dhaf_3404 3638892 .. 3638916 -  -9.3  -4.79683   AACTGAGAAAAGAAA          GAACAGAGCCT TTT ACGCTCTGTCC          CAATACTTTCCTGTC 100 52
   Dhaf_3403 3637763 .. 3637777 -  -2.7  -4.25325   ATACAACAAAGCAAA               GACCC TATAC GGGGC               TAAGCATTAAAGATG  59 25
   Dhaf_3399 3635131 .. 3635179 -  -5.4  -2.80873   ACTTACTAAAAAATT GCCACCGACGCATAAACT TCACCTCATCACC AGTTTATGCAACCGTGGC GGAACTAAGACATGA  50 82
   Dhaf_3398 3634335 .. 3634362 - -10.7  -5.07941   AAAAGCATACAAAAA        GAGAGTAGTCC AAAAAG GAACTACTCTC         CCCTAAGAAGTTCTA 100 237
   Dhaf_3397 3632799 .. 3632813 -   -10  -5.95449   AAAGAAAACAAAAAA               GACACC TAC GGTGTC               TAATTCACTAAATCA 100 236
   Dhaf_3396 NONE
   Dhaf_3395 NONE
   Dhaf_3394 NONE
   Dhaf_3393 NONE
   Dhaf_3392 3628376 .. 3628400 -  -7.2   -5.4148   GAAACAAGCAAAAAA          GAACCGCTTA TATGC TAAGCAGTCC          TTTTTGCACTGTCAG  91 182
   Dhaf_3391 3625836 .. 3625882 - -22.5  -2.60244   TGGCCAATGAATCTA CGGCAAAAGACGGCTTCTGGC TGAAT GCCAGAAGCCGTCTTTTGCTT GTTTTCAGTCTGTCT 100 73
   Dhaf_3390 3623563 .. 3623595 - -13.6  -5.60993   GTGCTGAGAAAAAAA     GAATGGCTGGCAGCA TAAA TGCT-CCAGCCATCC      CTGAACTTGCTTAGT 100 58
   Dhaf_3388 3622358 .. 3622370 -  -5.5    -3.484   TTTATTATACCATAA                TGGCC CCT GACCA                ACAATCCGTTCTTCA  57 49
   Dhaf_3387 NONE
   Dhaf_3386 3620992 .. 3621017 -  -4.7  -5.93809   CTCTGAGAAAAAAAA         TTCATTGTCCG TTTA CGGACAAATAA          TCTAGGCTTTTAATT 100 27
   Dhaf_3385 3618856 .. 3618883 - -13.6  -3.84825   TCTACGGACAGCAAA        TGACTTCCTGCA ACCT TGCAAGAAGTCA         TACATGCCAAATGAT 100 54
   Dhaf_3384 3617574 .. 3617612 -  -5.4  -3.54543   AGCCACTCTCCTAAA   GGAAAAACCAAGCCCA TCCCTCC TATGCTTGACTTTTCC   TATTATTCCCGCAAA  57 28
   Dhaf_3383 3616938 .. 3616948 -  -5.4  -2.90227   CCGCAACGACTAAAC                 CTTG TGC CAAG                 TTAGTCATCCTTTCT  50 26
   Dhaf_3382 NONE
        engA NONE
   Dhaf_3380 NONE
        gpsA 3612558 .. 3612599 -  -8.2  -5.42862   ATATCTGCAAAAAAA GAGCACCGCCA-ACCCTTT ATTAA AAAGAGTCTGACGATACTC CCGACATTTTCCATC 100 58
   Dhaf_3378 3610661 .. 3610714 - -38.7  -3.21062   TATAGCAAGAGTGAA TCAAGGGGACAGGTCCCGTTTTTCA TGAA TGAAAAACGGGACCTGTCCCCTTGA TTCACTTTTGGGCTA 100 38
   Dhaf_3377 3609899 .. 3609929 -  -2.7  -3.95873   CGGGTATAAAAAAAC      CCGCAAATCTTTGCC TGG AGCA-AG-TTTACGG      ATTTCTCTAATTTCG  54 215
   Dhaf_3376 3608645 .. 3608691 -   -25  -3.86015   CACTCTCCTTATAAA TATACCTTGATCATCTATGTAC ATT ATACATAGATGATCAAGGTATA GCAAGAAGATTTAAT 100 57
   Dhaf_3375 NONE
   Dhaf_3374 NONE
   Dhaf_3373 NONE
   Dhaf_3372 3606666 .. 3606706 - -17.9  -2.79915   ATGCAGCCTAGTATA CATAAAGGAAGCGTGTCC TGCCCT GG-CACGCTTCCTTTATG  CCTTATTTGCCAACC 100 57
   Dhaf_3370 3605161 .. 3605178 - -11.3  -3.23899   GGTTAATGAAGTTAA             GGGACAC CGAA GTGTCCC              CTGCTTGTTTCTAGC  86 36
   Dhaf_3366 3600079 .. 3600089 -    -4  -4.21812   TCCTATCGAAAACAA                 TTGT AGC ACAA                 TGTGGCCGCTTGTCA  61 175
   Dhaf_3365 3599532 .. 3599569 -   -13  -3.70902   TTTCTGACAGCGAAA   CAATAGACCTTGTAAC TTTCCC GTCACAAGGTCTATTA    TGCCAGCCTTATCTC 100 67
   Dhaf_3364 3598467 .. 3598487 -  -3.4  -3.10012   AATTTTAGCACGGAA           TTG-CTTTG CTGA CAAAGACAA            CCCTGTTTGCTATCT  46 35
   Dhaf_3363 NONE
   Dhaf_3362 3597148 .. 3597168 -  -4.7   -3.3422   GATTTGGTTAAAAAG            CCAAAGTTG TTT CAATCTTGG            TTCACCTGCTTGCAC  53 42
   Dhaf_3361 3596093 .. 3596131 -  -4.5  -4.22346   TAAACCTATCGAAAA   GACCGAAGTCCATCAGC TCCAG GCTGATTTCTTTCGGTC   TCAGTATTCATTGGG  63 88
   Dhaf_3360 NONE
   Dhaf_3359 3594147 .. 3594196 - -11.6  -5.07107   TAAAGTGTCAAAAAA GGAGGCAAAGCTCTTCAAC-CCTG ATCA CCGGCATTGC-GAGCTTTGCCTCC CTATTCTATTCCCAA 100 56
   Dhaf_3358 NONE
   Dhaf_3357 NONE
   Dhaf_3356 NONE
        hemA NONE
        hemC NONE
   Dhaf_3353 NONE
   Dhaf_3352 3586002 .. 3586017 -  -4.7  -2.85351   TTTCCCTACACTATA              CCGAT CTCTTC ATCGG               TCAAGTAGCAGGCTG  49 0
   Dhaf_3351 3584985 .. 3584996 -    -3  -2.79796   TGGTATTCCAGGATA                CAAT CATG ATTG                 TTCCTCCTTTATCCA  43 17
   Dhaf_3350 NONE
   Dhaf_3349 NONE
   Dhaf_3348 NONE
   Dhaf_3347 3581284 .. 3581307 - -15.3  -3.63515   GCCCATGCCCAAGAA          GCCGCCGGT CATTGC ACCGGCGGC           TTCTTGGGGCTTATC 100 85
   Dhaf_3346 3580379 .. 3580396 -  -7.7  -4.95758   AGTAGATGAGAAAAA             GAGCCTG AATT CAGACTC              TATCTCCACTATCGC  95 18
   Dhaf_3345 3579702 .. 3579714 -  -4.9  -3.75153   CCTTTTTAATCCAAA                TACAT ATT ATGTA                TAAAAATGTATAACT  59 329
   Dhaf_3343 3577236 .. 3577248 -  -2.6  -3.62849   GGGAGCAAACCAGAA                GGCC GTCGA AGCC                CTTGGCCAGTATGGC  51 416
   Dhaf_3341 3575667 .. 3575702 -  -6.4  -5.40072   GCTTTTTCAAAAAAA    GAGGAT-ATATGCTC TTCTCTT GAACATATCATCCTC    TCCCTAAACCTGAAA  89 61
   Dhaf_3339 NONE
   Dhaf_3338 3573630 .. 3573649 - -12.2  -5.51046   GAAAGATACAAAAAA            GCCCTATC TGCT GATAGGGC             TACATATTAATAATC 100 42
   Dhaf_3336 3571718 .. 3571759 -  -2.3  -4.68424   TAATCCACGCAAAAA GAAGCAAAGCCGGGC ATACTATACCCA ATCCGGTTTTGCTTC  TTTATTTCATCTTTA  63 52
   Dhaf_3333 3568077 .. 3568095 -  -4.4  -3.18389   CCAACAGGAAAACCA             GGCTGCTC ATT GTGCACCC             CCTTGAAGCTGTCCT  49 13
   Dhaf_3332 3566369 .. 3566384 -  -5.4   -3.1875   TATATTTCAATGGAA              CGTGCT GTGA AACACG               TCATTTCATGCGGCG  53 138
   Dhaf_3330 NONE
   Dhaf_3329 3564037 .. 3564078 -  -2.3  -4.99043   TTTTCATAAATAAAA CCCTCCTGAGTTTTTCTCGT AAA AAGAGACAA-CCAAGGAAGG TTTTTGCAACAGATT  68 63
   Dhaf_3328 NONE
   Dhaf_3327 3562847 .. 3562879 -  -9.9  -5.29445   TTGCAACAAGAAAAA      GCTGGCTCCCCCTTA ATC TAAGGATAAACCAGC      CAAGATCACATAAGA 100 53
   Dhaf_3325 3561433 .. 3561443 -  -2.4  -5.04385   GAGACCGCCAAAAAA                 GGGG ACG CCTC                 GGCCGGCAAAATCGC  73 274
   Dhaf_3321 NONE
   Dhaf_3320 NONE
   Dhaf_3319 NONE
   Dhaf_3318 3556134 .. 3556146 -  -4.1  -3.10894   AGCAGCACTATTCAA                GTAGC ACT ACTAC                TATATTTCGTCATCA  49 131
   Dhaf_3317 NONE
   Dhaf_3316 3554384 .. 3554396 -  -7.7  -3.56862   AGAAACCCTTTGAAA                TCAGG CAA CCTGA                GGATCATCAATCCTG  66 403
   Dhaf_3314 3551280 .. 3551301 - -14.5  -3.95073   GTGCACATTGATAAA           GGTGCGGAA AATT TTCCGCACC            TTTGGTTGGCCTGAC 100 40
   Dhaf_3311 3546680 .. 3546694 -  -6.4   -3.3341   AAAAACTTCTTAGAA               CAAGAG CTC CCCTTG               TTTATTTCCCCGCTT  59 27
   Dhaf_3310 3544711 .. 3544743 - -14.9  -4.07568   TTTCCCCTGCCAAAA      TACAGGGGACTGCCA CTG CGACAGTCCCCTGTG      TGCTACTTTTCAAAT 100 28
   Dhaf_3309 3542726 .. 3542758 - -18.5  -4.15854   AAATCCAGCCCAAAA      TACAGGGGACTGCCA CTG CGGCAGTCCCCTGTG      TTCAACAAGTCATAT 100 27
   Dhaf_3308 NONE
   Dhaf_3307 NONE
   Dhaf_3306 NONE
   Dhaf_3305 NONE
   Dhaf_3304 NONE
   Dhaf_3303 NONE
   Dhaf_3302 3534693 .. 3534729 - -18.9   -3.0634   AATCCCAGCCCAATA    TACACAGGAGACTGTCA CTG TGGCAGTCCCCTGTGTA    TTACTTTTCAAATGA 100 83
   Dhaf_3301 NONE
   Dhaf_3300 3533844 .. 3533863 - -11.4  -3.70773   CTCTATATCGAATAA            GCCGCCAC TCCT GTGACGGC             TAAACAATCCTTGAT  90 42
   Dhaf_3299 3532670 .. 3532715 - -32.9  -3.65313   TAATGACATTCTAAA GGGCGTGTCGCCCTACGTTTA TGTG TAAACGCAGGGCGACACGCCC TTTCAATAAGATTAG 100 244
   Dhaf_3291 3521532 .. 3521544 -  -3.5  -3.08991   ATTCTTTTAATAAAT                TAATT TTA AATTA                GTTAACGATTTAAGT  48 139
   Dhaf_3290 3519980 .. 3520000 -  -4.6  -4.93877   CCCTATCAAATAAAA            GACCCCCC CGTTT GGAGGGTT            AGTCCGCTATGATAT  77 24
   Dhaf_3289 3519338 .. 3519348 -  -5.4  -3.21807   CGATTAAATTTAATA                 GGTA ATA TACC                 TGAATCAGTATTTCT  53 40
   Dhaf_3288 3518052 .. 3518088 -    -3  -4.11183   TCTGACGACAAAGAA    GCCGTTGCCCAA GGAACTGTAAAGT TCGTGCAACGGC    ATTTTTGCTTTCAGT  58 78
   Dhaf_3284 3513636 .. 3513654 - -10.2   -5.4505   GGGCGCAAGAAAAAA             GCCGGCCC CCT AAGCCGGC             TATCCAAAACTATTG 100 35
   Dhaf_3283 NONE
   Dhaf_3282 NONE
   Dhaf_3281 3509665 .. 3509675 -  -2.4  -3.24232   TCGTTTTCAAACACA                 GGTG TTC CTCC                 TCGTCAATTCGTGGA  45 102
   Dhaf_3280 NONE
   Dhaf_3279 3507961 .. 3507976 -  -4.8  -3.13309   TATAATTACTTAAGA              TATACT ATAG AGTATA               ACTAAATAGGTCGTC  51 103
   Dhaf_3278 3507458 .. 3507476 -  -3.8  -3.22774   GAGAGCGACCAGGAA             CAATGCAG CAA CTACTTTG             GCAATGCTCCACACT  48 92
   Dhaf_3277 NONE
   Dhaf_3276 3505186 .. 3505231 - -17.9  -4.92363   AAACAGGGAGAAAAA CAGGGACAGGTACCATTATTCA TAC TGAATA-TGGTACCTGTCCCCT TTTTTCACGTTAGCG 100 35
   Dhaf_3273 NONE
   Dhaf_3272 3501893 .. 3501905 -  -4.9  -2.52795   AATTTTTTTAATTTA                TGTTA AAA TAACA                CGTCCAAAATAAAAT  47 366
   Dhaf_3271 NONE
   Dhaf_3270 NONE
   Dhaf_3269 3498239 .. 3498275 - -23.9   -5.4505   TTCGTCAACAAAAAA    GTCGTCCTCCCCCCACT ATC AGTGGAGAGAGGACGAC    TTTGGCTATTGGCCT 100 135
   Dhaf_3265 NONE
   Dhaf_3264 3495486 .. 3495516 - -18.5  -2.90219   CATAATCTTGACAGA       TGCAAGTCGGTAC AATTA GTACCGACTTGCA       TTTACCTTCCAATCT 100 76
   Dhaf_3263 3495198 .. 3495223 - -14.1  -4.98857   ATTGAACCAGAAAAA         GACCCACCTAA AGCA TCAGGTGGGTC          CCTGCCAAAGCATCC 100 55
   Dhaf_3262 3494441 .. 3494480 - -10.8   -5.1383   AAGAATATACAAAAA  CAGGGCGGGAACTCAA CTTAACCC TTGAGTTCCCGCCTTT   CTTTAATAACACATC 100 79
   Dhaf_3257 3490916 .. 3490940 -   -13  -3.13164   GTGCTAATGATGCAA          TAAAGAGCGG TTATC CCGCTCTTTA          TTCTTTAGTATTTAG  95 37
   Dhaf_3254 3488096 .. 3488144 -  -6.5  -4.87786   GTAAGTTCATAAAAA GGGAGCATCGCCGGGCTACTGCA AAA CGTAGCTTTCAGGCAATGCTCCC TTTGCTTAAAAAGAG  80 87
   Dhaf_3250 3482961 .. 3482980 -  -4.2   -3.8211   GGTGATTGAGAAGAA            CCCTCAGG TTAT CCTGAGCA             CCTACTCCTACTACA  57 422
   Dhaf_3248 NONE
   Dhaf_3247 3479788 .. 3479804 -    -3  -4.18668   GCAAAAAAGACCAAA             CTTGGCA TGCC TGCCA-G              TGCTCTGTAACACTT  58 54
   Dhaf_3246 NONE
   Dhaf_3245 NONE
   Dhaf_3244 3478120 .. 3478145 - -10.5  -3.84825   GCTACTCATAGCAAA         GGTGGTTCC GTCTTATG GGAACCACC          TTTTTACACAGATTC  86 86
   Dhaf_3243 3476176 .. 3476206 - -13.4  -4.59089   TAATTCATAAAGAAA       GATAGGGCACCT GGCTGAA AGGCGCCCTATC       TTTTTTGTTTTACTC 100 47
   Dhaf_3241 3473770 .. 3473788 - -11.8  -2.78863   GAAATTAAATAAGAG             TTCAGGGA AAA TCCCTGAA             ACAAATTTTAAATAC  83 333
   Dhaf_3237 NONE
   Dhaf_3236 3469280 .. 3469294 -  -9.2  -3.29013   ATTGTAATAACTTAA               CCGGGC TTT GCCCGA               TCATTGTTCTCGAAC  74 7
   Dhaf_3235 3468287 .. 3468303 - -10.9  -5.98675   TATAAAAAGAAAAAA              GATGCAG CAG CTGCATC              TTCTCCATTCATTGA 100 34
   Dhaf_3234 NONE
   Dhaf_3233 NONE
   Dhaf_3232 3463408 .. 3463457 - -19.5  -4.15833   AGGAGTAGGTCAAAA CAAAAAGCCGCTGCCCGAGGAACA TAT TGTTC-TCCGGCGGCGGCTTTCTG TCTGGTAAGCTTCTA 100 38
   Dhaf_3230 3459947 .. 3459979 - -12.8  -2.85069   AAGTCCTAAAGATGA      CGAAGCGCAGCAAT CTGCC ACTGCTGCGCTTCC      TTGTGTCTTTTATTG  91 43
   Dhaf_3228 3454807 .. 3454840 -   -16  -3.77721   AAGCAAGTAAGAGAA     CCCCGCCCAGTCGT CAGAAT ATGACCGGGCGGGG      TTTCTGCTTGCGAAA 100 66
   Dhaf_3226 3452858 .. 3452875 -  -5.5  -5.18726   CGGGCATAAGAAAAA             GCACCCC GGTG AGAGTGC              TTGTATGTTATAATT  81 360
   Dhaf_3225 3451823 .. 3451862 - -17.4  -3.21276   GCCCTTCTTACAATA  TAAAACCGCGTGAAATCA TCGT TGATCTCACGCGGTTTTT   TCAACTCATGGTTTT 100 102
   Dhaf_3223 NONE
   Dhaf_3222 3447028 .. 3447060 -  -9.1  -5.09173   GAATACGCGAAAAAA      GCAGACCGGCTCCGT TAT AGGGAGTCGATCTAC      TCTAACAATAATCTT 100 344
   Dhaf_3220 NONE
   Dhaf_3219 3444603 .. 3444617 -  -2.8  -3.42346   AATATGCTAGTACAA               TGAGCA TGA TACCCA               CTCCTCCATTTTTCT  48 88
   Dhaf_3218 NONE
   Dhaf_3217 NONE
   Dhaf_3216 NONE
   Dhaf_3215 3442296 .. 3442313 -  -2.1  -3.31001   CTGCATAAAAACAAG             TACTTTT TCGA AAAAATA              TCATTATCCCTGCAG  45 29
   Dhaf_3214 3440667 .. 3440698 - -14.6  -4.96848   CCCTTTACATAAAAA      CGAACTTCGGATAA TCAG CCATCCGAAGTTCG       TTGCCGAAATTACTC 100 44
   Dhaf_3213 3440102 .. 3440123 -  -8.7  -4.46976   AGCAATAAACACAAA           GAGAGCCCC ACAT AGAGCTCTC            TTCACATCTCATGCA  93 51
   Dhaf_3212 NONE
   Dhaf_3211 3437352 .. 3437377 -    -4   -4.7078   TTAACCATGGAAAAA         GCCGTAGAAC ACTAAA ATTCTAGGGC          TTTTCTCCTTTACTT  68 119
   Dhaf_3210 3436190 .. 3436231 - -18.1   -4.1891   TGTTCTTAACACAAA GGCCCCTCTATCTACCGGC AGAA ACCAGCAGATAGAGGGGTC  CTGAAAATTCACCCT 100 79
   Dhaf_3209 NONE
   Dhaf_3208 3435018 .. 3435037 -  -4.3  -2.60909   AAATTCATAGAATAT            CCTCAGCC GTCTT GG-TGAGG            GGAGTTTTGGCTTAA  45 8
   Dhaf_3207 NONE
   Dhaf_3206 NONE
   Dhaf_3205 NONE
   Dhaf_3204 3433117 .. 3433155 -   -14  -3.01712   GGCTTGGCTGCAACA   CAAAAGCCTAATACCTGC TGG ACAGGAATCAGGCCTTTG   CCACGGTTCTTTTTT 100 89
   Dhaf_3203 NONE
   Dhaf_3202 3428467 .. 3428508 - -16.7  -4.29106   CTGTACATGAAGAAA GAGCACCGCCGGACTACTTT TGT AGAGTAG-CCGGCGCTGCTC TTTTTCTTTATGCCT 100 148
   Dhaf_3200 NONE
   Dhaf_3199 NONE
        glgC NONE
   Dhaf_3197 NONE
   Dhaf_3196 NONE
   Dhaf_3195 3415726 .. 3415737 -  -3.6   -3.6579   AAGTTACTCCAATAA                GGCC CGAA AGCC                 GACCCAAGGATTTTG  53 106
         pgi 3413974 .. 3413994 -  -9.7  -2.77994   CACAAACTTGAACGA            GGCACTTCA TTG CGAAGCGCC            TCGTTTTTCATTCCA  72 49
   Dhaf_3192 3413502 .. 3413514 -  -3.4   -3.3422   CATCCCCTTAAAAAT                CTTC GATAT GAAG                TTGACCCGTCATATG  47 44
   Dhaf_3191 NONE
   Dhaf_3190 3410931 .. 3410962 -  -3.7  -5.40474   AGTTTGGCAAAAAAA      GGAGGAGTTTAGA CAACTC TCTATAATCCCCC       TTTTTGACGCACGCC  80 246
   Dhaf_3189 NONE
   Dhaf_3188 NONE
   Dhaf_3187 NONE
   Dhaf_3186 3409720 .. 3409767 - -21.6  -4.24606   AACCGATACGGAAAA GCAAAGAGATAGGCACTACCTCT TGC AG-GGCAGCGCCTACCTCTTTGC GAATTCTTTGAACAT 100 53
   Dhaf_3185 NONE
   Dhaf_3184 NONE
   Dhaf_3183 NONE
   Dhaf_3182 3407080 .. 3407131 - -16.9  -4.12532   TTTTGCATAGAGAAA CCTCCATAATAGATTCGTCTTGGT TAATC ACCA-GACGTCTCTATTATGGAGG AATAAACAAAATGTT 100 359
   Dhaf_3181 NONE
   Dhaf_3180 3405961 .. 3405989 -    -4   -2.6563   CCTTCTAATAATTGA       GTGACGATATTCT TTCA AGA-TATTGTCAC        CTTTCAAAATACATT  45 59
   Dhaf_3179 3405020 .. 3405032 -  -3.3  -4.02108   CTTATGATAACCAAA                GCAGG GGG CCTGA                CCGTGTCAGAAGCGT  58 325
   Dhaf_3175 3400706 .. 3400719 -  -2.4  -3.30124   CCTTATGTCTCAGAA               CAGT TTAAAG ACTG                TTCTGCTGCCACCCG  45 158
   Dhaf_3172 3398044 .. 3398062 - -10.4  -3.05715   AAGCCCTCGACGGAA             TCTGTACA CTC TGTACAGA             AACATTGGAGCTCTT  72 352
   Dhaf_3170 NONE
   Dhaf_3168 3392460 .. 3392474 -  -6.4  -3.68908   AAATAGCTATTGAAA               CCCTTG AAG CAAAGG               ACTATTCTGAGTAGT  63 77
        trmB 3391451 .. 3391484 -  -7.6  -5.00616   TTTGCTTTGAAAAAA     CGGTTTGAACAA AAAATAGAAA TCGTTCAAACCG      TTGCTATGATTAGGT  95 305
   Dhaf_3165 NONE
   Dhaf_3164 NONE
   Dhaf_3163 3380927 .. 3380984 - -22.5  -3.71991   GACAAACCTTAAGAA TATCCCCGGAAATAACAAAAGACGGC TTCCTGT GCCGTCTTTTGTTATTTCCGGGC-TA TACTATTGTGGTGTG 100 71
   Dhaf_3162 NONE
   Dhaf_3161 3379460 .. 3379499 -  -6.4   -5.0925   CTGGAAAATTAAAAA  GAGGGTGTCGCGAAAC AATTTGCA GCTTCACGGCACCCTT   GCTTTTCTACCATTA  87 42
   Dhaf_3160 NONE
   Dhaf_3159 3376891 .. 3376916 - -10.5  -3.99805   CGCTAAAAATTCAAA         TGGGCTATGCA ATAC TGCATAGCCTA          TTAAGCTTATTTGTG  89 32
   Dhaf_3158 3376012 .. 3376055 - -13.2  -4.20042   ATTAAGATCCTAAAA GGTGTCTTCCGCTCAGCC TTTTCTCT GGCTAATCGGAGGACACC TTCATCAAAAACCCT 100 52
   Dhaf_3157 NONE
   Dhaf_3156 3374427 .. 3374451 - -10.1  -3.85698   CCTTTCTGGGACAAA          GGGCTATCT AACTAAG AGATAGCCC          TTTGTTCTCAGATTT  84 40
   Dhaf_3155 NONE
   Dhaf_3154 3372657 .. 3372667 -  -3.2   -4.1822   CTGGACTCTAACAAA                 TGCC ACA GACA                 ATTCCCCCTTTTGCT  58 7
   Dhaf_3153 NONE
   Dhaf_3152 3369775 .. 3369800 -  -8.3  -4.49756   CGCCAAACATTAAAA         CAGCAGG-TGCC GCT GCCAGCCTGCTG         TATTTTCCAATGCTT  87 237
   Dhaf_3147 3365546 .. 3365559 -  -3.8  -3.61244   GATCTGAGAAATCAA               GGAG TTTAAT CTCC                ACTATTCGTTCTTTG  53 65
   Dhaf_3146 3362592 .. 3362639 - -15.6  -2.77013   GACCGTGTGAAGAAG GGCCGCTGCAAACCTTACCGGC CTGA ACCGGCCAGGTTTGCAACAGCA TCGCATACTCATGGG 100 80
   Dhaf_3145 NONE
   Dhaf_3144 NONE
   Dhaf_3143 NONE
   Dhaf_3142 3358853 .. 3358875 -  -2.7  -2.78384   GCTGCGTGTATCAGA           GATCATCGT ACTGG ACAATGTTC           AGCCTCCTTTTCTGC  42 5
   Dhaf_3141 NONE
   Dhaf_3140 NONE
   Dhaf_3139 NONE
   Dhaf_3138 NONE
   Dhaf_3137 3353189 .. 3353221 -  -7.8  -4.07859   CGAAGAAACAGCAAA     GAGCCGCAGCAAATC ATAA GATTT-CCACGGCCC      TCATACCTGCTCTTA  76 58
   Dhaf_3136 NONE
   Dhaf_3135 3350462 .. 3350496 - -17.3  -3.99957   CTAAACACCCAGAAA     CGCCCTAATCTCACC ATAAA AGTGAGACTAGGGCG     TCTTTCATTAAGGGT 100 63
   Dhaf_3133 3348405 .. 3348424 -    -5  -5.60993   TTGCTCATAAAAAAA            TGCAGG TCACTCTT CCTGCA             CAATTTCACCTTCCT  91 31
   Dhaf_3132 3347584 .. 3347599 -    -9  -5.23316   TAGTATAGCAAAAAA              TCGGCT CTTC AGCCGA               TTTTATTGTAAATTT 100 39
   Dhaf_3131 NONE
   Dhaf_3130 NONE
   Dhaf_3129 NONE
   Dhaf_3128 3342325 .. 3342354 -  -9.9  -3.19889   CATGAATATATTCAA       CCAGCCTCAAGCC TCAA GGCAGGAGGCTGA        TTTGATTTGCGCTGT  74 9
   Dhaf_3127 3341768 .. 3341785 - -11.3  -5.00138   TAGTGAAATCAAAAA             CTCCCAC AAGT GTGGGAG              GTGTGAATGTCTTTA 100 38
   Dhaf_3126 3339418 .. 3339429 -  -4.4  -4.47271   GAAATGGAAGCAAAA                GGAA TACT TTCC                 ATGGCTTTCTCCTGG  65 412
   Dhaf_3124 NONE
   Dhaf_3123 3336944 .. 3336978 -    -8  -4.88293   AAGCTTAAAAATAAA     GAACAGAATCCTCC GTTTTCT GGAAAACTCTGTTC     ATTATTATAGGTTTT  91 39
   Dhaf_3122 3336107 .. 3336132 -  -5.5  -2.70932   CCTCCTTCCCAACTA         TCACTGAAAGA AGTC TCGTTCAATGA          TTCATGCCTGTATAA  49 19
   Dhaf_3121 3334534 .. 3334584 - -13.5  -4.43477   TTTAGGCAAGTAAAA GACCTTCAAATCTTATGCAGTCC GATTA GAACTGTCTAAGAATTGAAGGTC AAATTGTTTAGGAAT 100 44
   Dhaf_3120 3333780 .. 3333810 - -11.3  -4.77165   TTCTGCATAAGAAAA       GACATAGCTTTCC TCAGT GGAAAACTATGCC       TCTTTGAAGTAATCA 100 73
   Dhaf_3119 3332288 .. 3332298 -  -2.6  -3.05463   ACGTTCTGCACTCAA                 TTAA TAG TTAA                 CCCCTTTCGCTATTC  43 22
   Dhaf_3118 3330643 .. 3330684 - -12.3  -5.18726   GCTGGACAACAAAAA GGCCCCTGTTCAACGAACT TTAC AGTCCGTTTGACAGCGGCC  TTTTGTTTCTTTATC 100 36
   Dhaf_3117 NONE
   Dhaf_3116 3329852 .. 3329866 -  -2.8  -3.11359   TCCCCAAAATCAAAG               GTTCGA ATT TCCAAC               TATCTGAGAAGATTT  44 64
   Dhaf_3115 3329327 .. 3329361 -  -5.9  -4.20806   GAGCCCAAAATCAAA    CAGGACTGTCTTTCAC TTCC GTAAAA-ACAACCCTG     TTTCTTTAGAGTCAT  68 89
   Dhaf_3114 NONE
   Dhaf_3113 3327728 .. 3327779 - -13.8  -3.09635   AGTTGCATCAGGGAA CAAAAAGCCGCTGCTCAACGAACT TTAC AGTCCGTTTGACAGCGGCCTATTG ACTATTTTTGCGGAG 100 65
   Dhaf_3112 3326904 .. 3326962 - -18.3  -3.30173   AAAAACAGATGAATA TCGATAAAGAAAAAACCGGGAGGGTGC CCTGC GCGCCCTCCCGGTTTTTTCTTTGCCCG GATCCCCGGAATATA 100 61
   Dhaf_3111 3326318 .. 3326336 -  -3.9  -3.08522   GATTCAGTTGAAAAT            CTGCAGAC AACA GTCTG-AG             TGATAAATAAATCTG  48 105
   Dhaf_3110 NONE
   Dhaf_3109 3324323 .. 3324353 -  -4.9  -4.16943   CTGCACAGTTGAAAA      GAAGTCGA-T-CCAT TTT ACGGAAATCGACTTC      TTTCAATAAGAACTT  63 78
   Dhaf_3108 3323739 .. 3323749 -    -4  -3.76224   CTTGCAGCCATCAAA                 GTAA AGA TTAC                 AGATCTGCCAAGTAG  57 22
   Dhaf_3107 3322773 .. 3322786 -  -3.1  -5.31275   TTTCATCACAAAAAA               CAAAC ATTT GTTCG                ATTTCCATTATACTT  79 131
   Dhaf_3106 NONE
   Dhaf_3105 3321168 .. 3321188 - -11.2  -4.53685   AAACTATAAGGAAAA            CAGGAAGG ACTCG CCTTCCTG            TTACTCCTTCGCTAT 100 26
   Dhaf_3104 3319232 .. 3319256 - -12.2   -4.2408   TTATAAAATTATAAA          GGACAGGCGA TGTTC TCACCTGTCC          GCAATGTTCAAGATT 100 55
   Dhaf_3103 NONE
   Dhaf_3102 NONE
   Dhaf_3101 3317246 .. 3317271 -  -6.9  -4.12397   TTACACAATCAGAAA         CACCTGCC-GCT TTA AGCCAACAGGTG         TCCTGCTTTAAAACC  71 78
   Dhaf_3100 NONE
   Dhaf_3099 NONE
   Dhaf_3098 NONE
   Dhaf_3097 3313810 .. 3313839 -    -8  -4.49937   TCAAGAATAGCAAAA       GAGAAGGCTT CTTAAATTTT AAGCCTTCTC        TTTGTATTCCTCAAT  82 14
   Dhaf_3095 3312317 .. 3312343 -  -5.7  -2.64616   GCTCCATTTATACCA         CCCCCTGACAC TTTAT GCGTCCTGGGG         GATAGATTAGTACTA  52 38
   Dhaf_3094 NONE
   Dhaf_3093 3309860 .. 3309904 - -19.6  -3.46602   TTCGCCATAGCATAA GTGCAGAACCCCCTGATGT TTATCGGT ACA-CAGGGGGTTCTGCAC TGTTATTAGTAGCCT 100 59
   Dhaf_3092 3309229 .. 3309245 -  -2.9  -2.80443   TGATACTCGACGACA              GTGGAAC CTT GTCACAC              CGCTCCGCCCGGGGA  42 74
   Dhaf_3089 NONE
   Dhaf_3088 NONE
   Dhaf_3087 3304971 .. 3304985 -  -7.8  -3.52652   GCCACTGAATCAGAA               CGCCAC TCA GTGACG               CTAAGTCATCGAATA  68 121
   Dhaf_3086 3303887 .. 3303915 - -13.2  -3.07013   CAGTTCTTCAATATA       GGC-GGCCGCTTC CTGA GAAGCGACCCGCC        CTATTCAAATCTACG  95 66
   Dhaf_3085 3302460 .. 3302496 - -23.9  -5.36441   TTTGCATATAAAAAA    GCGGGGAAGAGATGGTT TGA AGCCATCTCTTCCCCGC    TCAAAGGTTTTTGGA 100 44
   Dhaf_3084 NONE
   Dhaf_3083 3299516 .. 3299544 - -13.2  -2.78237   TAAATAATAATTAAG        GGAAGCACGGCT ACGAG AGCAGTGCTTCC        TTTTATCTTTCCCTT  91 60
   Dhaf_3082 NONE
   Dhaf_3081 NONE
   Dhaf_3080 3297949 .. 3297966 -  -9.9  -5.15117   TAAAATTGCAAAAAA             CCTGTCA AATG TGACAGG              TTTTTTATACGGGAA 100 43
   Dhaf_3072 3288474 .. 3288496 - -12.1  -3.71527   GCGGAAGTACTTAAA           GAAAGCACC CTCCT GGTGCTTTC           CAATCAGGGCATGGT  88 363
   Dhaf_3070 3287644 .. 3287660 -  -8.7  -5.30155   GTACGAATTAAAAAA              CCACACC GAA GATGTGG              TGCAGCATGTCCTCA  95 287
   Dhaf_3068 3286386 .. 3286398 -  -3.4   -3.2614   TAGCCTCCACAGCAA                TCCT TCATT AGGA                TTGTAATGGATTATC  47 51
   Dhaf_3067 NONE
   Dhaf_3066 NONE
   Dhaf_3065 3284485 .. 3284526 - -11.5  -5.63504   AATTTGAGAAAAAAA GACCGCAGCCCCATGAACC TTAA AGTTCATTGGACAGCGGAC  ACAAGGTGTTCCCTA 100 3
   Dhaf_3064 3284077 .. 3284103 - -13.1  -5.06816   AGCGGGCAACAAAAA         TAGACCGTCCT TTGGG AGGACGGCCTA         TGCCTATTTTTTCAG 100 48
   Dhaf_3063 NONE
   Dhaf_3062 3281570 .. 3281580 -  -5.4  -3.54459   TCAATCCTTCCTAAA                 TTCC CCT GGAA                 CAGGTAGATTTTCAT  57 0
   Dhaf_3061 NONE
   Dhaf_3060 3279555 .. 3279573 - -10.2  -4.02206   AACCTAAACATTAAA             GCCGCTCA CAA TGGGCGGC             TTTTGTATCATTAAC  89 56
   Dhaf_3058 3277191 .. 3277207 -  -8.1  -4.35483   CTTTATCATAATAAA              GCTAAAA ATA TTTTAGC              TACCTGCCATATCTT  78 423
   Dhaf_3056 NONE
   Dhaf_3055 3275765 .. 3275777 -  -3.3  -3.76224   GCGGGATCTACTAAA                GCGGT TCA ATCGC                TTTTATCCCCGATCT  53 18
   Dhaf_3053 3272656 .. 3272677 -  -9.5  -5.07011   TAGAGAAAGTAAAAA           GGGCTTATC TGGT GATAAACCC            CGAAAATGCCAACAA 100 72
   Dhaf_3052 3271646 .. 3271658 -  -4.9  -3.47349   CGCCGAAATCTATAA                TTTAC ACT GTAAA                TCGGAAAAAATTCAG  55 382
   Dhaf_3050 3268563 .. 3268587 - -13.7  -3.86015   CACGCTGCGGAGAAA          GGTTGGAAACA GGA CGTTTCCAACC          CGCCATTGAGCAGGA 100 190
   Dhaf_3049 NONE
   Dhaf_3048 3265692 .. 3265720 -  -8.2  -5.38549   TTTAAACAACAAAAA        GGTCCTCATGAC TGTTG ATCATCAGGACC        TGAATATTGAATTGT 100 56
   Dhaf_3047 NONE
   Dhaf_3046 NONE
   Dhaf_3045 NONE
   Dhaf_3044 3263062 .. 3263078 -    -8  -5.25805   AACAAATTCAAAAAA              GAGAGC TTTGC GCTCTC              TTTTTGGCTTATTAA 100 70
   Dhaf_3043 3261150 .. 3261193 - -17.8  -4.70659   TGGGAGAGCTAAAAA GGAGTATCA-CTCACTGCTTT AAA AAAGCAATGAGGCGATACTCC TTCAGTATATTCCCC 100 77
   Dhaf_3040 3258395 .. 3258405 -  -3.2  -2.94708   CACCCTTTAAATAAT                 CCAC CCT ATGG                 CGTCGCCAGGCTCTC  44 39
   Dhaf_3038 3257273 .. 3257288 -  -4.7  -5.38326   TCAATCAAATAAAAA              GCATC GCCACA GATGC               CCAAGGAGCCTTTTC  82 170
   Dhaf_3037 NONE
   Dhaf_3036 NONE
   Dhaf_3035 NONE
   Dhaf_3034 3253037 .. 3253083 - -19.9  -3.21912   TTTTCAACTCATGAA TATAAGGGCATACAATCAG AATTACGAA CTGATTGTATGCCCTTATA CGCATCTTCCTCAAC 100 36
   Dhaf_3032 3252105 .. 3252134 -  -9.5  -3.39327   CCCTGATAGGTATAA       GAAAAGGAGAT CCTGCTCT ATCTCCTTTTC        TGCCTTCAACCTTTT  74 56
   Dhaf_3031 3251258 .. 3251286 - -12.6  -4.65895   CGGCCCACTGAAAAA       CAAGAAGCTCGCT TGAC AGCG-GCTTCTTG        TTGTCTTTATAGATC 100 55
   Dhaf_3029 NONE
   Dhaf_3028 3246841 .. 3246865 - -11.5  -5.82388   AAAGGTGAAAAAAAA          GGATACAGAGC AAT ACTCTGTACCC          GCATAAGATCAAACA 100 74
   Dhaf_3027 3246315 .. 3246332 -  -4.1  -3.14344   TACCTTGCGGAGGAA             GCTGAGT ACGA ACTCAGG              CAGACGGACATAGTA  49 105
   Dhaf_3026 3245728 .. 3245743 -  -7.5  -5.88565   CTGACAATAAAAAAA              CGCGC TCCAAG GCGCG               TAAGTTATTGAAGAG 100 30
   Dhaf_3025 NONE
   Dhaf_3024 3244421 .. 3244449 - -21.1  -2.84634   CTCTATACTATCACA        GGGGGGCGTATCA CTT CGATACGCCCCCC        TGGTATTTTGCTCAT 100 63
   Dhaf_3022 3243632 .. 3243646 -  -4.3  -5.17353   ATACTTATTAAAAAA               TGATC TGCAT GATCA               TGACATCCAAACATT  78 3
   Dhaf_3021 3242457 .. 3242486 - -13.1   -5.0133   GAGGGTTGGAAAAAA       GCACTCCTA-TCAA TGA TTGAATAGGAGTGC       TTCGGACAAAAAGCC 100 50
   Dhaf_3020 NONE
   Dhaf_3019 NONE
   Dhaf_3018 NONE
   Dhaf_3017 NONE
   Dhaf_3016 3236388 .. 3236400 -  -3.4  -3.15364   ATATGATTAAAATCA                GAGT TCTTT ACTC                CACGATGTCAGCGTA  46 20
   Dhaf_3015 3235431 .. 3235450 -   -10  -5.28481   TATGCAATGAAAAAA            CGCCGCAA TCCC TTGCGACG             TCATTGTAACATATG 100 193
   Dhaf_3014 NONE
   Dhaf_3013 3233010 .. 3233023 -  -2.4  -4.37886   TTACCGGTCAGAAAA               TCTC CTTGCT GAGA                CCACCTAACGGGGCT  61 405
   Dhaf_3010 3230758 .. 3230768 -  -5.4   -3.4398   TTCTAACCGAAAAAT                 GGAA TCT TTCC                 TAGTATTCCGGCACA  57 46
   Dhaf_3009 NONE
   Dhaf_3008 3229571 .. 3229600 -  -3.7  -3.38564   TAAATCTAGTCATAA       TTATAGGTAATTT TCTC AAATTTCCGATAA        TTAATCAAATAGAAT  49 63
   Dhaf_3007 3229206 .. 3229233 -  -4.1  -5.46706   AGGGCAAAATAAAAA        CGCCTGCGG CTTTTCAGCT CCACAAGCG         TTAATCACAAACTTA  85 70
   Dhaf_3006 NONE
   Dhaf_3005 NONE
   Dhaf_3004 3224415 .. 3224427 -  -7.7  -2.71712   GTTTGGCGGCGAAAG                TGTCC AGT GGACA                GTTTCGCTCAAGGCG  60 198
   Dhaf_3002 3223129 .. 3223153 -    -5  -3.67597   GGTCGTACTGAAGAA         TGGATA-GGGG AATG CCCCATCTCCA          ACATCGCCGGGAAGC  57 128
   Dhaf_2997 3219441 .. 3219472 - -13.8  -3.52079   GAACATTTTACAGAA      GGAAAAAGAGGGGG TATT CCCTCTCCTTTTCC       ATGTCATGCTTATGT 100 49
   Dhaf_2996 NONE
   Dhaf_2995 3217414 .. 3217427 -  -6.7  -2.87132   TCTTTTGCTCAGATA               GCCAA TTGA TTGGC                CAGATCATAGAGAAC  57 5
   Dhaf_2994 NONE
   Dhaf_2993 3214737 .. 3214781 - -20.9  -3.93026   AATAGCTTAAGGAAA GAGGCTGTTGCTTAACGAACG TAC CGTTCATTTTGCAACAGCCTC TTCTTTTCCTTGCGC 100 41
   Dhaf_2990 3212847 .. 3212873 - -10.2  -5.26119   GCCTCAAAAATAAAA         CAATGGTAGGGA AAC TCCCTACCATCC         CCGCCTTGCCGTAAA 100 249
   Dhaf_2989 3212004 .. 3212041 -   -15  -4.11938   GAAATGAAGCAGAAA   TACGACCCTC-CCCCTA AAACA TCGGGGCGAGGGTCGTA   TTTTTATAAGCTCTT 100 94
   Dhaf_2986 3207690 .. 3207704 -  -3.6  -2.61264   TTTGGCAGTTAGAAT               TCAAAA ACA TCTTGA               TAGACTTCTTTATAG  44 4
   Dhaf_2985 3207341 .. 3207365 -  -9.4  -4.86731   GTTGCCTAAATAAAA         GAGGGACGTGT CTGC ACAC-TCCCTC          ACTAATGGGCTATTA 100 38
   Dhaf_2983 NONE
   Dhaf_2982 3202195 .. 3202213 -  -7.4   -5.2112   AAGATCAGCAAAAAA             GCACGTCA GTC CAACGTGC             TTTTGCATTTATTGC  90 12
   Dhaf_2981 NONE
   Dhaf_2980 NONE
   Dhaf_2979 NONE
        surE 3199122 .. 3199147 - -14.9  -4.21462   AGCTACCATGGAAAA         TAGGAGTACAG TGCG CTGTACTCCTA          TTTATTTGGATTCTC 100 23
   Dhaf_2976 3198212 .. 3198226 -   -10  -4.45068   ACTCCGAAGAAGAAA               CCTTCC GGT GGAAGG               TTTTAGGATTCACGC 100 297
   Dhaf_2973 3194755 .. 3194769 -  -2.9  -2.74605   CCTCCTTAAAATGTA               TTAGA AAAGG TCTAA               CCTTTGACTAATCGT  42 22
   Dhaf_2972 3192661 .. 3192682 - -10.9  -5.69976   ACAAAAAAAAGAAAA           CAGCCAGGT AACT ACCTGACTG            TTGATTAAGCGCTAT 100 51
   Dhaf_2971 NONE
   Dhaf_2970 3190643 .. 3190663 - -10.5  -5.93252   TCGAAAAACAAAAAA            TCCCTGCAA ACC TTGCAGAGA            GCGGATTTCATATTG 100 279
   Dhaf_2969 3189083 .. 3189110 -  -5.6  -5.88565   CTGACAATAAAAAAA        GA-ACCCCGGC TCTAACT GCCAGGGTGTC        TGCTCCTGCTGAAAA 100 156
   Dhaf_2967 NONE
   Dhaf_2966 3187186 .. 3187232 - -10.2  -5.37865   TCAATAAGTAAAAAA CGGATAGTGAATCCGGTGTT CAACTAC ATCACCAGAAACACTATCCG CTTAGAAAAATGGCT 100 46
   Dhaf_2964 3184508 .. 3184530 -  -7.8  -5.84381   TCATTAATAAAAAAA           TGCAACATAT CAG AAATGTTGCA           TTTTACTCAATATTT 100 131
   Dhaf_2963 NONE
   Dhaf_2962 NONE
   Dhaf_2961 3181556 .. 3181572 -  -2.2   -3.5525   AGACACTTTTTCAAA              CCGTAT AAAAG ATTCGG              CAAAATGCATTCATC  47 39
   Dhaf_2960 NONE
   Dhaf_2959 3178550 .. 3178589 -  -8.7   -2.9294   CAGACCATTGATATA GGGGCCG-GACTTAAGATC AGAA GA-CTTCAGTCACAGCCCC  AACCGGGTTCTTTGC  68 62
   Dhaf_2958 3176804 .. 3176835 -  -5.9  -4.88258   AAAAGCATAATAAAA      GGGAC-GGCTTCTC TAAAT AAGAAGTCTGTCCC      CCTTGATGTTCTAAT  78 103
   Dhaf_2957 3175865 .. 3175877 -  -4.8   -2.8541   AGTAAATAAATCAAC                CCAG TCTTT CTGG                CTTTCTAAAAATCAA  49 30
   Dhaf_2956 3174781 .. 3174825 - -11.6  -4.62783   CAGCTAGGTCAAAAA TTACCCCAGTGCCATCCCGAA AAAA TTCAGAACAGCACCGGGG-AA TATTCCTGCACTATG 100 98
   Dhaf_2955 3173628 .. 3173657 -  -8.7  -5.65177   ATATGTATAAAAAAA       CACAGACTCTTCCA CGC CGGAA-AGCCTGTG       CTCCTTATATCTATT 100 40
   Dhaf_2954 3170847 .. 3170871 - -11.5  -5.50774   TACAACAAACAAAAA          GGAAGACTCCT TTT AAGAGCCTTCC          TTTTGATCAGTTAAC 100 59
   Dhaf_2953 3170330 .. 3170352 -    -7  -4.84527   CTTATATAGCAAAAA           GCTCGCCT ATGGATA AGGCAAGC           TTTTTGGCAGTAAAG  82 62
   Dhaf_2952 3169748 .. 3169762 -  -2.2   -3.5511   TGGCATCCATAAAGA               TATACT TTT AATATA               TGTATTCTCGTCTCA  47 54
   Dhaf_2951 NONE
   Dhaf_2950 NONE
   Dhaf_2949 3167248 .. 3167273 - -13.3  -3.95435   CTGTGCAAAAGATAA         TGACGGCCGCC TTAC GGCAACCGTCA          ACCTTAAAAGAGCTC 100 29
   Dhaf_2948 NONE
   Dhaf_2947 NONE
   Dhaf_2946 NONE
   Dhaf_2945 NONE
   Dhaf_2944 3161321 .. 3161338 -  -6.9  -3.54414   ACCCCCAACTAAATA             GCCCACC CTAT GGCAGGC              TCAACACTTTCAGTC  63 35
   Dhaf_2943 NONE
   Dhaf_2942 NONE
   Dhaf_2941 3157839 .. 3157877 - -29.2  -3.62597   GGTAGCTCTTAATAA   GCAAGATAAACCCGGGAG AGA CTCCCGGGTTTATCTTGC   TTCAAAAAAACTCAT 100 147
   Dhaf_2940 NONE
   Dhaf_2939 NONE
   Dhaf_2938 3153503 .. 3153538 -  -7.7  -5.54079   TTAAAAATGAAAAAA    GCCTTTCCGGATCATG TTCTT CATTACCCG-AAAGGC    CTATTCAACGCATCT 100 39
   Dhaf_2937 NONE
   Dhaf_2936 3152378 .. 3152389 -  -5.8  -3.29511   TGGACTTTTCCAGAA                TCCG CACT CGGA                 ATTCTCCTGGCCACC  57 131
   Dhaf_2935 NONE
   Dhaf_2934 3150714 .. 3150745 - -10.3  -5.95539   CCGTAAATAAAAAAA      CCAGATAATGCAA ATTTAA CTGCACTATCTGG       CTAATGCTTCACCCT 100 78
   Dhaf_2933 3146072 .. 3146105 -  -7.7  -4.63218   CCTCCTTTAAGAAAA     GGCTGTTCTATTAT CACGAGT ATAA-AGAACAGCC     TTTTGATTGATAACC  86 52
   Dhaf_2932 NONE
   Dhaf_2931 NONE
   Dhaf_2930 3143766 .. 3143777 -  -4.4  -3.34192   AAGGGCGTTAAGTAA                TTGG TCAT CCAA                 GATTAATCCCTCCAT  51 18
   Dhaf_2929 NONE
   Dhaf_2928 3140878 .. 3140902 - -15.9  -4.21142   ATCGCAACAGAGAAA          GGTTGGAAACA GGA TGTTTCCAACC          AGCCAATCCGCTCCA 100 62
   Dhaf_2927 3139349 .. 3139374 - -10.5  -5.03145   TAATTCCGTAAAAAA         GCCCCCTATGA CTTC TCATAAGGAGC          TTCTAAGAATTACTT 100 35
   Dhaf_2926 3138394 .. 3138424 -  -9.2  -4.56093   AAGCCAAGCATAAAA      GGGCTCTTTGAAA TTTAAC TTTCAA-GAGCCC       TTTCTCGTCAACAGG  95 16
   Dhaf_2924 3135779 .. 3135795 -  -9.4  -3.48144   AATAATAAAAGCGAA              GCCGGA ATGAA TCCGGC              TAAATGCTGAAACGA  76 25
   Dhaf_2923 3134342 .. 3134372 - -19.8  -3.58305   AATGAAGCCCCTAAA       GGAGCTGCCGGAGT CCC ACTCCGGCAGCTCA       AGCTATTTTGCGCTA 100 42
   Dhaf_2922 NONE
   Dhaf_2921 3132856 .. 3132873 -  -5.7  -3.08046   CTGTCACCTTAAAAT             TCTTTTT TGTC AAAAAGA              TAGTAGGCTCCTGTA  55 1
   Dhaf_2920 3131261 .. 3131274 -  -4.5  -3.55444   GCGGCATCGGCGAAA               GCTGC CGAA ACAGC                CTTATCCATCAACGC  55 151
   Dhaf_2919 NONE
   Dhaf_2918 3128264 .. 3128291 - -12.2  -5.64274   TCATGGACAAAAAAA        GAACTATAAACC CACC GGTTTATAGTCC         TCATGTAAAAAAAGC 100 338
   Dhaf_2916 NONE
   Dhaf_2915 NONE
   Dhaf_2914 NONE
   Dhaf_2913 3124062 .. 3124098 - -13.1  -5.54079   TTAAAAATTAAAAAA    TAGAAGAGACAGCTCAT CGT ATGAGCCGCCCCTTCTG    ACATTTCTCCAATCA 100 57
   Dhaf_2912 3123205 .. 3123219 -  -2.9  -3.06696   CCTTTTTTCAACACA               TAAAG TATAG CTTTA               TTTTTTAATGTACAT  43 40
   Dhaf_2911 NONE
   Dhaf_2910 3120731 .. 3120787 -   -25  -2.65126   TAGAAGTCCAAACAT GCAAAA-AGAATCCCCTTGGATTATGG CATT CCATAATCCAAGGGGATTTTCTTTTGC TATCAGATTTCCTGT 100 65
        trkA NONE
   Dhaf_2906 3115372 .. 3115385 -  -6.7   -3.1855   TCGCTTAAGACTCAA               GAGGT CAAA ACCTC                TACCAAACCTTTCCC  59 25
   Dhaf_2905 NONE
   Dhaf_2904 3112413 .. 3112449 -  -5.8  -4.44301   AGCCAAAACAAACAA   CGGCAGACGCCTGTCCC TTAG AGGAT-GGTATCTGCCG    TTCTCTTATGTCAAA  73 157
   Dhaf_2901 NONE
   Dhaf_2900 NONE
   Dhaf_2899 NONE
   Dhaf_2898 3107133 .. 3107158 -  -3.2  -5.52384   CCGGTATGAAAAAAA         GCGCCCAAGT TTTTAC ACTCAGGCGA          TTAATCCCCAATCTT  82 77
   Dhaf_2897 3105640 .. 3105653 -  -4.5  -3.54543   AGCGAGGTGGGGAAA               GGATC AGAT GACCC                TTTCCTACAGCCTTT  55 111
   Dhaf_2896 3104641 .. 3104666 -  -9.1   -5.1356   CTTTATTAATAAAAA         CAGATCAGGAGC CAG GC-CCTAATCTG         TTTCACCGCCAATAT 100 58
   Dhaf_2895 3103175 .. 3103187 -  -4.7  -3.07344   TTACCGGGCAAGACA                TGGGG ACC CCCCT                CCTTATCGATTAGTA  51 58
   Dhaf_2894 NONE
   Dhaf_2893 NONE
   Dhaf_2892 3100633 .. 3100651 -  -4.6  -3.14931   TTTACTTTTTATCAA             GAACAATG ACA CATTATCC             AAATACTGGACACTA  51 38
   Dhaf_2891 NONE
   Dhaf_2890 NONE
   Dhaf_2889 3098301 .. 3098311 -  -6.8  -2.83208   AAACCATAAAAGGTA                 TCCC AGT GGGA                 ACTATCTGATAACGA  57 228
   Dhaf_2888 3097733 .. 3097761 -  -4.6  -5.53288   TTTAATGTAAAAAAA        GGCATACCATCC ACGCG GAATGATATGTC        TTTTTGAAGCAATAG  87 84
   Dhaf_2887 3097127 .. 3097152 - -14.9  -5.58209   TGAAATCGAAAAAAA         TTTAGCGTGCT CATG AGCACGCTAAA          GGGCAGATTGTATTG 100 75
   Dhaf_2886 NONE
   Dhaf_2885 3095470 .. 3095497 -   -15  -3.66803   TGCCAATATCCTAAA        GAAAGCATCCCC GATC GGAGATGCTTTC         CCTATATGATCATTC 100 44
   Dhaf_2884 NONE
   Dhaf_2883 3093525 .. 3093546 -  -8.7  -4.65933   CATTTTGAAAATAAA           GCAGGACCA TGTC TGTTCCTGC            TTCACTCAATTTAAT 100 52
   Dhaf_2882 NONE
   Dhaf_2881 3092350 .. 3092360 -  -3.2  -3.24924   TCTCCATGTACAACA                 CCTC ACT AAGG                 TACCTATTCCTAATG  47 58
   Dhaf_2880 3091839 .. 3091851 -  -3.3   -3.8211   GTCCATGGATAAGAA                GGGAG AAT CTCCT                GCTTCGCTCAAGGGA  55 399
   Dhaf_2878 3090047 .. 3090057 -    -4  -4.53034   CTTAGACAATGAAAA                 CAAT CTG ATTG                 CTGGAATGGCTGCTA  66 79
   Dhaf_2877 NONE
   Dhaf_2876 3087956 .. 3087995 - -14.2  -3.20896   TAACTAAGTAATACA  GCCCGCCTGTAGCCTTCC TTTT GATCGGCCACAGGCAGGC   ATTGCTCTATGAAGC 100 122
   Dhaf_2874 3087330 .. 3087346 -  -4.5  -3.57462   GATTCTATTTCTAAA              TATTTCG AGG CAAAATA              AGTACCCTTGAATTC  57 39
   Dhaf_2873 NONE
   Dhaf_2872 3086282 .. 3086320 - -12.5   -4.4846   CAAGTGAAGAAGAAA   CGCATCCCCTGCAAGAT TAAAT ACCTTGTAGGGGATGCT   CAATTTAATCCATAT 100 115
   Dhaf_2870 3085587 .. 3085618 - -18.8  -5.36441   TTTGTACACAAAAAA      GCCGTTGTCAGCAG ACAA CAGCTGACAACGGC       TTAAAAAGCAAATTA 100 124
   Dhaf_2869 NONE
   Dhaf_2868 NONE
   Dhaf_2867 3083969 .. 3084007 - -19.1  -3.71917   ATTGGAAATGGGAAA  GAAGAA-TCCCGCTGCCG CCCA CGGCAGCGGAAATTCTTC   TATTCTCCCTTCACC 100 53
   Dhaf_2866 3081633 .. 3081648 -  -6.8  -5.75822   GAGAAATTAAAAAAA              GGCTGG AATT CCAACC               TTTTAACTCCCTATG 100 103
   Dhaf_2865 3080202 .. 3080214 -  -3.4  -2.66216   TCCGATGATCATAAT                CGTT TTCAT AACG                TTCTCCTCTCCATGT  42 18
   Dhaf_2864 3079338 .. 3079368 -  -2.1  -3.01924   CATTTTTTCTGAATA      TCTCTA-ACCT-TTC ATT GAATAGGTGTAGAAA      CCTTAATAAGTGTAG  42 28
   Dhaf_2863 NONE
   Dhaf_2862 NONE
   Dhaf_2861 NONE
   Dhaf_2860 NONE
   Dhaf_2859 3073292 .. 3073303 -  -4.4  -3.48276   TTCTCCCTTAGACAA                CCAA CTGG TTGG                 TTGTTTAAACGCTCC  52 93
   Dhaf_2858 NONE
   Dhaf_2857 NONE
   Dhaf_2856 3069812 .. 3069829 -  -8.4  -4.92812   CTATAAGAAAATAAA             CCCAGG TCGTGC CCTGGG              TTAGTATTCTATAGA 100 89
   Dhaf_2855 3068578 .. 3068591 -  -4.5  -2.58686   ATCCGACAGAAAAGG               GCCTG AATT CAAGC                TTTTATCTCTAAACT  48 34
   Dhaf_2854 NONE
   Dhaf_2853 3066746 .. 3066784 -   -16  -3.72241   CATGAATTAGCCAAA   GGCGTCCTCCCTTCACTA TAA TAGTGGGGGCAGGACGCC   TTTATTAGTGATTAT 100 37
   Dhaf_2850 3065703 .. 3065725 -    -7  -5.00642   TAATGCATATAAAAA           CACCTGCC GTCCATA AGCAGGTG           TTTTTCCATTGTTCG  86 133
   Dhaf_2849 NONE
   Dhaf_2848 3061911 .. 3061962 -   -30   -3.7956   TAAAGAAGGTAATAA TGCAAAGTAAAAAGCAACTCCGTC TAAA GACAGAGTTGCTTTTTACTTTGCA AAGGAAGTGCCCACC 100 54
   Dhaf_2846 3060323 .. 3060342 -    -7  -3.34192   AAGGCGGTCAAGCAA            GGGGCCGG ATAT CCAGCCGC             GGTAATGACTGATTT  61 145
   Dhaf_2842 3058561 .. 3058606 -  -9.1   -5.1971   ATCAAAAAGGAAAAA GGGCTGTTGTACAAATGAACC CTAA AGTTCCTTGATACAACAGCCT CTTCTGGTCGCCTTA 100 91
   Dhaf_2841 3057961 .. 3057971 -  -3.2  -3.65529   ATATCCTTACTGAAA                 GACC AAA AGTC                 CAAAGACCATGGATA  51 6
   Dhaf_2840 3057360 .. 3057380 - -11.9   -5.9873   GTATGACAAAAAAAA            GCAGCTTCA ATG CGAAGCTGC            TTTTTAAAGCTTAAT 100 36
   Dhaf_2839 3055811 .. 3055837 -  -8.8  -4.72007   CCCCACTAAAAGAAA         GAAATCCTGCCT ATA AGACAGAATTCC         AGCAATGGTCTGTAA 100 57
   Dhaf_2838 NONE
   Dhaf_2837 3053849 .. 3053870 -  -9.5  -5.45802   TCTCTAAAACAAAAA           GCTTACGCA CCTA TACGTAAGC            TCTTTACATTGATCC 100 44
   Dhaf_2836 3052522 .. 3052534 -  -3.3  -4.14598   CTTAATCAAATTAAA                TGGCC AAT GGCAA                ATAGACGGCCATGAT  58 68
   Dhaf_2833 NONE
   Dhaf_2832 3043591 .. 3043613 - -10.6  -3.17763   GTGAGATCCGATGAA           GAAAGCCTCC AGT GGAGGGTTTC           AGGAGCTCACGCCCG  77 89
   Dhaf_2827 3037254 .. 3037298 - -12.4  -4.80167   TACCAAAAAGTAAAA TAACCAAACGATTCCCA-GCC GCTT AGCTTGGAAACCGTTTGGTCA AATTGATCAGGGAAA 100 45
   Dhaf_2826 3033878 .. 3033920 - -10.8  -3.00797   GTTAAAGTCATAAAT CAGTGCCTCTGC-AAGC ACGAGTTTTA GCTTTACAGAGGCACTG TGAGTTCTTAACTTA  79 298
   Dhaf_2824 3031088 .. 3031121 - -15.5  -3.14344   TACTGGGCGCACCAA     GAAAAGGCCTTCGAA AAAC TTCGAAGGTCTTTTC      GAATTGAACACTTCA 100 156
   Dhaf_2822 NONE
   Dhaf_2821 3029398 .. 3029419 - -15.9  -4.26292   AAGATCAAAATCAAA           GAGCGTCCC CACA GGGACGCTC            AGGAGAAGCATTGAT 100 40
   Dhaf_2820 NONE
   Dhaf_2819 NONE
   Dhaf_2818 3027092 .. 3027120 -  -5.4  -4.53036   CCATAAATAGTAAAA       GCGAGTTGCCT ACTCGATG AGG-AACTCGC        TTTACCTGGGTGCAC  70 126
   Dhaf_2817 3026306 .. 3026318 -  -3.3  -3.33696   TTTCCCGGGAATTAA                TTGGC TCC GCCAT                ACGCAAATATCCTTT  47 148
   Dhaf_2816 3025384 .. 3025405 -  -9.5  -4.19577   TAAGGTGCAAAAGAA           GCTCACAGA GCAA TCTGTAAGC            TTATCTTACTTGGAA  85 57
   Dhaf_2815 3023566 .. 3023591 -  -7.5  -4.61231   TTATATGTTGAAAAA         CCCCCTAAGCC TAAC AGCCCAGAGGG          TAAAAAGATTTCTTA  81 59
   Dhaf_2814 NONE
   Dhaf_2813 3020419 .. 3020460 - -18.9  -3.25491   AATCCAGATCATTAA GAAATCCCCGGAAATGAAC CAAC GAACATTTCCGGGGATTTC  TTCTTGCTTTATTGC 100 50
   Dhaf_2804 NONE
   Dhaf_2803 NONE
   Dhaf_2802 3010425 .. 3010459 - -14.4  -4.88918   CCAGTGCAAAGAAAA     CCCGGCAGCTCATTAT CAA AGAATAAGCTGCCGGA     ACTTTTTAAATTATT 100 36
   Dhaf_2801 3009259 .. 3009292 -  -3.2  -2.77899   TCTTCCCACCAATTA     TTCTGCCTATACTT GACTTA AAGTATTGGCAATA      TACAGTCAATTTCCA  43 91
   Dhaf_2800 3008956 .. 3008981 - -15.5  -4.21343   CGCAATATATACAAA         GTCTCAGCCCA AGGG CGGGCTGAGAC          TAATCACTGTCCATT 100 65
   Dhaf_2799 NONE
   Dhaf_2798 NONE
   Dhaf_2797 3003561 .. 3003573 -  -7.7  -2.89564   TTCTCACCGGAGACA                GAGCA TAA TGCTC                TGTCTCCAACATTTA  61 43
   Dhaf_2796 NONE
   Dhaf_2795 NONE
   Dhaf_2794 NONE
   Dhaf_2793 2998436 .. 2998446 -  -3.2  -3.12351   TCCTTTCATATTTAA                 GAGA TAA TCCC                 TGTCGGCCGGATAGA  46 54
   Dhaf_2792 2997534 .. 2997571 - -17.9   -4.9792   CAGCGCACACAAAAA   GGAGAGCCCTGCTCACCT TAA ACGTGAG-AGGGCTCTCC   CAGGCGTGCCGTTGA 100 70
   Dhaf_2791 NONE
   Dhaf_2790 NONE
   Dhaf_2789 2993487 .. 2993517 -  -3.4  -3.14211   ACTTTGCTTTATGAA      CGTTCAATCCGGA GCTTAA TCCAG-TTGAACA       AGTTTAAGTTTCACT  46 10
   Dhaf_2788 2991624 .. 2991657 -  -7.6  -4.25104   CGGCTGGCAGTAAAA    CGCCG-AGAGGAGATC TTAA GAT-TCCTCTCCGGCA     TCAGGAAACAAACTG  75 74
   Dhaf_2786 NONE
   Dhaf_2785 2989203 .. 2989232 - -14.5  -4.72272   CTTCTCTATGAAAAA       GTATGCATGTCCT GAAG AAGACATGCATAC        TTTCTTTAACTTATT 100 43
   Dhaf_2784 2988428 .. 2988450 - -11.4  -5.28414   GAAGAAATAGAAAAA           GAGGTACAAA TTT TTTGCACCTC           AACAATTTTTTTATA 100 174
   Dhaf_2783 2987566 .. 2987578 -  -7.7  -2.56475   CAATTCTACACTAAT                TTCGC GGA GCGAA                CAAATTACGGAGAGC  60 30
   Dhaf_2782 2986824 .. 2986837 -  -8.1  -4.89852   CCAGATCTAGAAAAA               GAGCC GTCA GGCTC                TTTTTTTAACTCTTT  91 57
   Dhaf_2780 2985084 .. 2985108 -  -9.3  -4.74706   CTGAACAGCTAAAAA          CAAGCCGCAGT TTC AATGCGGCTTA          AGTAGAATGCTTATC 100 127
   Dhaf_2779 NONE
   Dhaf_2778 2982586 .. 2982609 - -12.5  -3.58343   CCCATGATTGCCAAA          GGCGGAAGA TGTTAT TCTTCCGCC           TTTTAGCTTATTGCA 100 33
   Dhaf_2776 NONE
   Dhaf_2775 NONE
   Dhaf_2774 NONE
   Dhaf_2773 2975631 .. 2975668 - -13.5  -4.07568   GGGGGTTTGTCAAAA   TAGTAGAGGAGCAGCGGA AAT TCCGCTGCCCCCCT-CTT   TATACCCACTAAAAA 100 55
   Dhaf_2772 2974436 .. 2974456 -  -6.9  -2.68259   AACACTATTATATCA            CTCTTTACT GAG AGTTAAGAG            ATTATTTAGCAAAGA  56 155
   Dhaf_2771 NONE
   Dhaf_2770 2970666 .. 2970677 -  -4.4   -3.4096   AAGAGACCCGAAAGA                CGTA GCTT TACG                 TACAAAAGCGGACGG  52 228
   Dhaf_2769 NONE
   Dhaf_2768 NONE
   Dhaf_2767 NONE
   Dhaf_2766 2966906 .. 2966953 -   -15  -4.11751   AGGAATCCTTTAAAA GCAAAAGCCGGACTCCCTCC TAAGCAGC AGTGGGAATCCGGCTTTTAC GTTTTCTCTGATCCA 100 84
   Dhaf_2764 2964976 .. 2964995 -  -8.6  -5.27938   AGCGGCAAATAAAAA            GCATAGCC ATTT GACTATGC             TTAAAATGTCATTTG 100 47
   Dhaf_2763 2964206 .. 2964226 -  -3.3  -5.35222   AAAATGGAGAAAAAA            CAAATCACC ATC AGCGATTTA            GAGCAACTGAGGAGC  79 75
   Dhaf_2761 2962113 .. 2962164 -   -24  -5.03747   AAAGGTTGTAAAAAA GGGAGCCTCGC-CAACTGCTTTAAA TTA CCTAAAGCCGTTGGGCGAGGCTCCC TTACCTTGCACTATC 100 124
   Dhaf_2758 2958898 .. 2958922 - -12.9  -5.37345   TCGAATGATAAAAAA          GAGGGAACAGT TGG ACTGTCCCCCC          ATGGTTTACGGATGC 100 260
   Dhaf_2757 2957625 .. 2957645 -  -5.4  -3.85748   GCAGGGTAAAAAAAT            TGCACAGC CTGTT GCTCTGCA            TTAAAGTCTTCTCCC  61 83
   Dhaf_2756 NONE
   Dhaf_2755 2954563 .. 2954611 - -15.4  -2.81547   TTTCCAGATCAACGA TGCTCCCTCCAGGTCAGCTGTTT GACA AAGCAGCGG-CCTTGAGGGAGCA TTTGTATAGATTGCC 100 85
   Dhaf_2752 2952383 .. 2952408 - -11.3  -5.41746   AATTGGGTAAAAAAA         TAGACACCTCA TTTT TGAAGTGTCTA          CCTTTTACATATTAG 100 60
   Dhaf_2751 2950165 .. 2950188 -  -2.5  -2.80859   CTAAAAGATATATTA          CTCAACT TTCGCACCCC AGTTGAG           GGAATAGAGCCTTGA  42 3
   Dhaf_2749 2948936 .. 2948962 - -18.2  -3.65902   GGGATGTGATGTAAA         CAAAAAGCGCCA CCA TGGCGCTTTTTG         TTTGCCGTAAAAATA 100 117
   Dhaf_2748 2948306 .. 2948350 -  -8.7   -4.8622   CGGCTCAATTAAAAA GGGAGCATCGTC-ACTACTT ATACTG AAGTAGTTGGCGACACCCCC AACCAAGCGGTAGAT 100 45
   Dhaf_2747 2947976 .. 2947993 -  -9.1  -5.39721   TTATTATACAAAAAA             GCCCACA TTTA CGTGGGC              TTATCCTATTTTATG 100 66
   Dhaf_2746 NONE
   Dhaf_2745 2945715 .. 2945745 - -12.1   -5.4505   TTTGTTAACAAAAAA       TGAGAGTATCTCA TTTTT TGAAATACTCTCA       TCGGCGCTGGCATCT 100 23
   Dhaf_2744 2944147 .. 2944160 -  -2.3  -2.98607   TCCAAAGAAAGACCA               GGCAA CAGA TAGCC                CTTTTCCACATTTTT  42 53
   Dhaf_2743 NONE
   Dhaf_2742 NONE
   Dhaf_2741 2940530 .. 2940545 -  -2.4   -3.4811   TTTTCTACAATAATA              CGCGGC TCAG GCTGCA               CCGTCAAGGGCAGGG  47 41
   Dhaf_2740 2939925 .. 2939947 - -17.8  -3.35015   TTAAGCATGTGATAA           GGGAACCGGA AAA TCCGGTTCCC           TTTAGTAATTTTTTA 100 69
   Dhaf_2738 NONE
   Dhaf_2737 2937633 .. 2937654 - -13.1  -3.63627   GGCGTATATTCTAAA           GGGAAGAGT GTAC ACTCTTCCC            TTGCTGCGCCCAATC 100 82
   Dhaf_2736 NONE
   Dhaf_2735 NONE
   Dhaf_2734 NONE
   Dhaf_2733 NONE
   Dhaf_2732 NONE
   Dhaf_2731 2927852 .. 2927864 -  -3.4  -2.54955   ACAATGATGATCAAG                GGTT TCATG AACC                GGCTCCTTCTTTGTG  42 17
   Dhaf_2730 NONE
   Dhaf_2729 2926587 .. 2926604 -  -9.9  -5.24989   TGACACACGAAAAAA             GCCTGAT GGGA ATCAGGC              TTTACTGATGCGATG 100 50
   Dhaf_2727 2925883 .. 2925901 -  -4.4   -2.7641   AAAAAGGTCTGAAAG             CTCGGGGC TCT GGGCCGAG             TCTCCAGGATTTTGC  46 56
   Dhaf_2726 2923855 .. 2923865 -  -3.2  -3.31144   TGCGTATTCCCATAA                 GATG TGA CACC                 TCCCGTCTTTACTAC  47 80
   Dhaf_2725 NONE
   Dhaf_2724 NONE
   Dhaf_2723 NONE
   Dhaf_2722 NONE
         ddl 2918041 .. 2918073 -  -8.4  -4.53475   ATGGTATAAAAATAA      CCCTGAACTCCGCT GACTA AACGGCTTTCAGGG      CTGTATACCGATATA  87 41
   Dhaf_2718 NONE
   Dhaf_2717 2914977 .. 2915006 - -10.9  -3.81689   AAGACCATCATGAAA       TTACCAACCAATT GGCA ATTTGGTTGGTAA        TAGGGTTGTTCTGCT  88 42
   Dhaf_2716 2913801 .. 2913814 -  -6.7  -4.16842   CCCATGTTTAATAAA               CTGAC CCTA GTCAG                CTTAGACTACGGTAC  71 32
   Dhaf_2715 2913457 .. 2913469 -  -4.1  -6.09196   CCCAAAATAAAAAAA                GAAAG ACC CTTCC                CTTAGCTGAGTTCCT 100 100
   Dhaf_2699 2904917 .. 2904942 -  -4.7  -2.57876   AAAAGTGATAAAAGC         CTGAGAGATGC ATAA GTATCTTTCAG          TTTTTTTATTTTTAG  48 143
   Dhaf_2674 2874934 .. 2874959 -  -9.8  -5.30616   TGAGGGAAACAAAAA         GAAGCATGCC GGCTTG AGCATGCTTC          TTTTCAGTTGATAGG 100 60
   Dhaf_2673 2874059 .. 2874069 -  -5.4  -3.04122   GGGGATTATAAAGGA                 CCTT ACT AAGG                 AGAGAAAACCATGAG  52 371
   Dhaf_2666 2868587 .. 2868622 -  -6.2  -4.99043   GCGGCATAAAGAAAA    GCGCCTTTCTC-CAC TGTTATG GTGCGAAAAGGGCGC    TTCTTTTATAACAAG  84 64
   Dhaf_2654 2857817 .. 2857832 -  -6.8  -3.79864   TTTAGATAAGAAATA              CAGGGA ACCG CCCCTG               TGCCTTCCGGAAAGG  67 88
   Dhaf_2646 2848146 .. 2848159 -  -3.1   -4.6038   TATAGGAAATCAAAA               TCCGA AGAA TCAGA                AGCGATTCGTTTAAG  65 457
   Dhaf_2638 2842048 .. 2842077 - -12.1  -3.43151   CTAATCACGAATTAA       GGGGATTCTTGCC TGAA GGCTGGAATCCCC        TTGATTTTGTGATTA  91 38
   Dhaf_2625 2826469 .. 2826513 - -26.8  -3.63627   TCTGGAGAGTCCAAA CTACCAAAGCCGGCCCTTGAT AGAA ATCAAGGGCCGGCTTTGGT-G CGTAAAACACGATTT 100 39
   Dhaf_2610 NONE
   Dhaf_2609 NONE
   Dhaf_2608 2807158 .. 2807178 -  -2.5  -3.50111   TACTAAAAAGCAATA            CGGTGCT GAATTCA AGCATCG            CTCAAGAAGCTTTAG  48 41
   Dhaf_2606 NONE
   Dhaf_2605 2806033 .. 2806055 - -13.6   -4.5852   GAAGCCAAATTAAAA           TTAGGGTACA ATT TGTACCCTAA           CTGCTATGACCGCAT 100 138
   Dhaf_2600 2801995 .. 2802014 - -12.2  -3.70676   CATAGTTAAAACGAA            CCGTACTG ATGC CAGTACGG             TTTTTTGCTGCTTAT  93 66
   Dhaf_2597 2796423 .. 2796435 -  -3.3  -3.01712   CTTTTTGGTTGAACA                CAGCC TTT GTCTG                GATCGATATGGTCGG  45 90
   Dhaf_2593 2792351 .. 2792384 - -15.3  -3.62054   AGCCCAAATAATTAA     GCCAGGAGCTTGTCC TAGC GGAACAGCTCCTGGC      TTTTAGCAATTTAAA 100 52
   Dhaf_2579 2780049 .. 2780063 -  -7.1  -3.53811   GGCATGGTCGTCAAA               GCGGA TATTT TCCGC               TTTATGATTCAGCCT  64 243
   Dhaf_2577 2778552 .. 2778564 -  -3.3   -3.7791   GAATCACTGATCAAA                CAGGG CAT CCGTG                TCAACGGCGTAGCAC  53 366
   Dhaf_2566 2769535 .. 2769576 - -19.1   -4.2828   CCGGATTGATTAAAA TACAAAGGCTTAGAAATGA TTGT TCATTTCTAAGCCTTTGTC  ATGTGGAATCCTTCT 100 45
   Dhaf_2556 2759233 .. 2759281 -  -5.5   -3.2218   CGGAAGATTTATGAA TAAAAAAACCGAGGCACATTA ATATGTA CATTGTGTCTTGGTTTTTTTA TTTCATAGCCCCCCT  52 120
   Dhaf_2541 2746059 .. 2746099 - -11.4  -4.13728   TATATATGGGCAAAA CAGAGTCAGGACTATCTCCA AAA TGGAGAT-G-CCTCACTCTG TTTTTGTTTCTCATT 100 86
   Dhaf_2537 2741234 .. 2741247 -  -6.7  -4.84359   CGATCCGCAGAAAAA               TCCAG TAAA CTGGA                ATTTCCGGACTGAGG  82 495
   Dhaf_2534 2737945 .. 2737964 -  -2.8  -4.57073   CATGGCGCGGAAAAA            CAGCTCTCT CTA AGAG-GCAG            GAATGGACAGAAAAG  65 460
   Dhaf_2504 2704798 .. 2704823 - -20.5  -4.89063   TCAGTTAAAAAGAAA         GGGCTGCCGCA ACGT TGCGGCAGCCC          CAAGTGGTTAGTTGT 100 49
   Dhaf_2503 2704021 .. 2704076 - -13.6  -3.42702   TATCATGGAAGAATA GCCAGCGAAGAGAAGCAGGTGTGTCA CACCCC TTACACACCTGCTTCTCT-C-CTGTC TTTAGCACTCTTTCC 100 71
   Dhaf_2499 NONE
   Dhaf_2498 NONE
   Dhaf_2497 2694859 .. 2694885 -  -3.6  -5.60556   AAGAGAAAAGAAAAA         GATCCAGTGACC TAG GACGGCTGGATC         TCCAGAATATTATCG  89 107
   Dhaf_2496 NONE
   Dhaf_2495 2693992 .. 2694036 - -18.1  -4.20367   TGGGGGAACAAAGAA GCACCTCCCAGTCTGTGACA GTGGTA TG-CACAGACCAGGAGGTGC TCAGCGTTAATCTTT 100 32
   Dhaf_2494 2692556 .. 2692604 - -14.8  -3.20901   ACCCCATGAATGTAA CAGACAGCAAAACAGCCTAACCA AAAC CGGCCAGGCTGTTTTGCTGTA-G AAATATTTCTTTAAT 100 158
   Dhaf_2489 NONE
   Dhaf_2488 2687122 .. 2687146 - -14.3  -3.60296   TATGCTCACCGCAAA          GCCCCAGGG TCATTAT CCCTGGGGC          TTTCGTTTACCCCGG 100 81
   Dhaf_2479 NONE
   Dhaf_2478 2675100 .. 2675139 - -16.6  -4.89477   TGCCCAATAAGAAAA  GGCAGTTGCCAAGAAACT TTAA AGTTCACTGGCAACTGCC   TTTCTTCTCAGGCAC 100 90
   Dhaf_2474 2671757 .. 2671778 - -12.3  -4.59773   CTTTATGGTGAAAAA           CCACGCCTC AAAT GAAGCGTGG            TTTTTTGCTGGATGA 100 47
   Dhaf_2467 NONE
   Dhaf_2466 NONE
   Dhaf_2465 2661144 .. 2661154 -  -8.2  -3.21276   CCTCCGGGGAGAAGA                 GCCG GTA CGGC                 GCTTTTTAGAGAGTT  64 305
   Dhaf_2463 2660198 .. 2660235 - -19.5  -3.90588   TAGGGTTCAATTAAA   TAGGGTATCAGAACCTA TTCT TAAGTTCTGATACCCTA    TTTGTCTACAGTCTG 100 108
   Dhaf_2426 NONE
   Dhaf_2425 NONE
   Dhaf_2424 2615419 .. 2615468 - -15.8  -3.58305   AAGCAATGCTGGAAA CCGCCCCGCAAGACCTCTCACT GGAGGA AGCGATAGACCTTGCGGAGCAG GTTCCCAATTTTCGG 100 506
   Dhaf_2415 2607725 .. 2607745 - -11.2  -3.39352   CAATCGAAAAGCCAA            TCCCTGCA GACAT TGCAGGGA            TTTTTTATTTCTTCG  81 304
   Dhaf_2404 NONE
   Dhaf_2403 2594777 .. 2594828 - -19.1  -4.63486   AGCTCCTCAATAAAA CTACGCTGGAATGTA-CCAAGAAC GCGAT GTTCCTGGGTATATTCCAGCGTAG TTTGCTTTATACAGT 100 56
   Dhaf_2390 2582168 .. 2582184 -  -9.3  -3.12338   AACTAACGCGAAAAG              CCCGCCG CTC CGTCGGG              TGCCCGGCCAAATCG  72 399
   Dhaf_2386 2577888 .. 2577907 -  -4.3  -3.08032   GGTTCTGGAAAACTA            TCCCGAT GCCCAG ATCGAGA             TCATTGATTCCCGCT  47 516
   Dhaf_2384 2576230 .. 2576262 -    -5  -5.63517   TCTGTAAACAAAAAA     GAACAG-GATTGTGA TTAA CCACAATTTCTGTTC      TTTTGGCTTTTAAGG  91 69
   Dhaf_2381 NONE
   Dhaf_2380 2570157 .. 2570208 - -17.5  -3.86781   AAATAATAGTAATAA GTAGGAGCCTCCCGGCACAAGAAA AGAAA TATCTTGTACCGGGAGGCTC-TGC GGTTTATAGCGTTTA 100 109
   Dhaf_2376 NONE
   Dhaf_2375 NONE
   Dhaf_2374 2563666 .. 2563678 -  -2.7  -4.75518   TATAGAAAATTAAAA                GAACA TAA TATTC                ACTATTAATAAACCA  67 149
   Dhaf_2363 2551753 .. 2551793 - -20.6  -4.72272   TGCGGTTATGAAAAA  GAGCCGGTCACCACAAGA TATTC TCTTAGGGTGACCGGCTC  TGTGTCTTAGAGGTC 100 32
   Dhaf_2361 2550493 .. 2550503 -    -4  -3.66908   GTTCTTCAAAAGCAA                 TCAA AAG TTGA                 GGACTGATTCTGGCT  54 56
   Dhaf_2360 2549723 .. 2549742 -  -7.1  -3.29649   ATGGGACTATAGTAA            TGCGGAC TGTATG GCCCGCA             TAAATCAATCTGTAC  64 60
   Dhaf_2359 NONE
   Dhaf_2358 NONE
   Dhaf_2357 2545236 .. 2545267 - -11.7  -3.67517   CATTAAGACGTGAAA      CGACCTCTTTACT CAAAAC AGTAAGGAGGTCG       TTTTAGGCTTTACCC  90 60
   Dhaf_2355 NONE
   Dhaf_2354 2543584 .. 2543607 -  -6.6  -5.67063   TTGAGGAGAAAAAAA          GGACCGAGGC CGCA GCCTCGGTTT           TCCTTATAGGCTATA 100 63
   Dhaf_2346 NONE
   Dhaf_2345 NONE
   Dhaf_2344 2532242 .. 2532274 - -16.4  -3.64703   TTTTGGGTAGCGAAA      TCCTCTTCCCGCCC GTAAA AAGCGGGAAGAGGA      AAATAAAGCGGAAGA 100 49
   Dhaf_2343 NONE
   Dhaf_2342 NONE
   Dhaf_2341 2529352 .. 2529363 -  -3.6  -2.81547   TTGCCATAGCAAGCA                CCGC CTTT ACGG                 ATTTTTGGGTTAAGA  45 53
   Dhaf_2340 2528602 .. 2528623 -  -8.7  -4.99035   GTACCTATAGAAAAA           GCCTACCAC CGGG GCGGTAAGC            TTAAGAATGGGTTAT 100 56
   Dhaf_2338 NONE
   Dhaf_2337 NONE
   Dhaf_2336 2522672 .. 2522713 - -17.5  -3.18582   TACGTTATTTAGGAA TCTAAGTCCCTTCCTGC AGGTTCAA GCAGGAGGGGACTTAGA  TTTATGGTAGAGGAG 100 81
   Dhaf_2331 NONE
   Dhaf_2330 NONE
   Dhaf_2329 2516002 .. 2516034 -  -6.2  -4.90381   GGGAAGATAACAAAA      GACGGCGGCTGG TTTAAAATG CCAGAAGCCGTC      TTTTCTGTAAACAGG  80 132
   Dhaf_2326 2512435 .. 2512447 -  -7.7  -2.64258   AGGAATTCAATCAAG                CTTCC AAA GGAAG                TTTCAGAGAAGCTGA  60 280
   Dhaf_2323 NONE
   Dhaf_2322 2508692 .. 2508706 -  -2.7   -4.3014   ATATACGCACTAAAA               TCGGC AAACA GCCGG               GGGATACCATCAGGG  59 82
   Dhaf_2318 NONE
   Dhaf_2310 NONE
   Dhaf_2309 NONE
   Dhaf_2308 2492365 .. 2492413 -  -5.4  -4.20084   ATTAGCTAGTTAAAA CCCCCTG-GGCTATCCCGGTGCA TTGCAC TGGAG-GGGAT-GCCGCAGGGGG TTTTTAACTTCCTAT  65 37
   Dhaf_2299 2482622 .. 2482656 - -13.1  -2.93492   GACTAGATATGAAAG    CACCCTCAAGACTTTA CTGC CAAAG-CTTGAGGGTG     TTTTTTGCCCTAACG  95 35
   Dhaf_2295 2479038 .. 2479068 - -11.1  -4.52415   ATGGATAATAATAAA      GCACGAGTCCCCCC TGGC GGGCGG-CCCGTGC       TTATTGGTAAAGCCG 100 49
   Dhaf_2294 2477350 .. 2477375 -  -5.5  -2.77899   CCCTTGCACCAATCA         CTTCTCTGATT AGCA AATCTGAGAAA          GCACGGGTAAAATTA  49 510
   Dhaf_2288 2471057 .. 2471092 - -16.2  -2.98491   AAGGCACATTATACA    GGCAGGCTGTAAGGGC ATAG GTCCTTACAGCCTGCT     TTAATTTAATGTAAC 100 63
   Dhaf_2286 NONE
   Dhaf_2285 2468146 .. 2468160 -  -2.2  -3.80746   TTTCCAAAAATAATA               TTTCAA GAC TTAAAA               GTATGGGTTCAGCTC  51 69
   Dhaf_2284 2467408 .. 2467418 -  -3.2  -2.85216   TACTATTCATAATTA                 CCCT CCC AGGA                 TTAGTTTGATAGTTA  43 56
   Dhaf_2283 2466738 .. 2466766 -   -11  -4.20531   CATATGCATGCAAAA        GGAGCCGCGACA GCAGT TGTTGCAGCTCC        TTTATTCATATCTCA  93 62
   Dhaf_2260 2439596 .. 2439633 -  -4.3  -5.83211   GAGCAAAAGAAAAAA   GAAGGCA-GGAGTATC GTTGATG AATACTTCATGCCTTC   TTCAATTAATTAGAG  93 35
   Dhaf_2259 2438143 .. 2438166 - -16.8  -3.97308   TGTAAATAGAGGAAA          GGGGAAAGGG TAGT CCCTTTCCCC           GATCAAGTGCTGTTT 100 44
   Dhaf_2258 NONE
   Dhaf_2257 2435319 .. 2435331 -  -4.1  -3.63298   CTGAACCAAATAATA                TACGG TAT CCATA                ATTACGCCTCCTCCT  54 27
   Dhaf_2256 NONE
   Dhaf_2255 2433917 .. 2433942 - -16.1  -4.78077   TTTAAGCAAAATAAA         TCCCCGGCTGC TTGT GCAGCCGGGGT          CAGACGCTAAATCTT 100 99
   Dhaf_2254 NONE
   Dhaf_2253 NONE
   Dhaf_2250 NONE
   Dhaf_2249 2428375 .. 2428409 - -15.1  -3.29511   CTCATTGCTTGATAA     GCCTAAAGAGCAGCC GGTGG GGCTGCCCTTTAGGT     ATTATGAAGGATTTA 100 38
   Dhaf_2248 NONE
   Dhaf_2247 2426050 .. 2426068 -  -3.1  -5.17786   CAATAAAATCAAAAA            GGAG-GAC TTGC GCCGCTCC             TTAGGTATCGTGCTC  74 524
   Dhaf_2243 2421602 .. 2421647 - -13.5  -2.91334   CATAGCAGATAATTA CAAAGAGTTGCCTTGAATTGG TTGT CCAATTCAAGGCATTTTTTTG CGCTAAATACCCCGC 100 150
   Dhaf_2239 2417038 .. 2417056 -  -5.2  -2.76815   ATTTCCCTGAACAAT             GGCTGAAC AGC ATTCCGCC             CCAGCGGCGCCAAGC  49 219
   Dhaf_2233 2412740 .. 2412756 - -12.3  -3.58766   AATTATAGCATACAA              GCACTCC ATC GGAGTGC              TTTTTCTTATGTCAA 100 110
   Dhaf_2232 NONE
   Dhaf_2231 NONE
   Dhaf_2230 2409280 .. 2409323 - -13.4  -3.53012   CTTCTTTTGCTTAAA GAAGCGGCCTATATTTCAC GATAAAA GTGGAATA-AGGCCGCTTC ATATTTACCCTTTGT 100 30
   Dhaf_2219 2396812 .. 2396827 -  -6.8  -4.73614   CAGCAGGAAAATAAA              GCCCTC AAAA AAGGGC               TGGAGGGGATCAACA  80 421
   Dhaf_2216 2394887 .. 2394911 - -17.1  -5.10163   AATTTGAAAAGAAAA          GCCGGCCAGGG AGT CCCTGGCCGGG          TATGTATTACATAGC 100 53
   Dhaf_2215 2394210 .. 2394250 - -22.8  -4.00756   CAGTGTATTAAACAA  CAGCAAGACGGCCTGG CTAAAATGC CCAGGCCGTCTTGCTG  TACGCTCTTATTGGG 100 115
   Dhaf_2214 2392644 .. 2392672 -  -5.4  -3.36968   GAGTTAATTTCATAA        TGTTAGTCCG AAAATAAAA CAGACTAACA        GAATTTCGGAATTTC  55 55
   Dhaf_2213 NONE
   Dhaf_2212 2388961 .. 2388975 -  -4.2  -2.75081   TAGCCTTAAAATTCA               TACCCT ATA AGGGTG               ATATTGACTGTTCCT  46 1
   Dhaf_2211 2387957 .. 2387971 -    -5  -2.73619   AAGTATCGGCTAAAT               TCACCA GTG TGATGA               TTAAACAGGATGACA  49 102
   Dhaf_2209 2386364 .. 2386386 -  -5.6  -3.59279   CAGGATAAGAATGAA           CTTCATGGCA TTT TTCCATAAAG           AGACGATGCATATCG  61 234
   Dhaf_2206 2385166 .. 2385176 -    -4  -3.57825   TTTATAAAAGATTAA                 TGAT ACG ATCA                 TTGACGTCTACTTGG  54 1
   Dhaf_2205 2384340 .. 2384391 - -22.8  -3.48684   CTATAATGATTAGAA TAGAAGACAGAAAAGGCTGTGAG TTGACTG CTC-CAGCCTTTTCTGTCTTCTA CGCCAAGCGCTTATT 100 91
   Dhaf_2202 2381060 .. 2381089 -  -7.7  -4.14013   GAAAAGGCGGCAAAA       GACGACAACCGGC GGAA GCTGGAAGTCGTC        TTTTGCTTAAAAGAA  76 51
   Dhaf_2191 NONE
   Dhaf_2190 2365927 .. 2365956 - -12.3  -2.84504   ATCTCTGAAATATGA       TAGAGGATGCC AGATAAAA GGCATCCTCTA        ACTTTCGCATTGCGA  89 44
   Dhaf_2182 2352985 .. 2353018 -   -17  -4.45544   GCTTATGAAGTAAAA     TTTCAGCACAGACT GCAGTT AGTCTGTGCTGAAA      TCTATCTCTTGAAGT 100 249
   Dhaf_2178 2349272 .. 2349304 - -22.1  -3.04144   CCTTGATTTCTAATA      CAAAGCCGGCCTGGG ATC CCCAGGTCGGCTTTG      TATTACATAGCTATT 100 28
   Dhaf_2171 NONE
   Dhaf_2170 2338260 .. 2338279 -  -2.8  -3.98606   CAAGACGGAAAAAGA            TATCCAGA AAGC TCTGGTCA             GCCTCATGCAGAACC  56 198
   Dhaf_2159 NONE
   Dhaf_2158 2322935 .. 2322945 -  -5.4  -2.59055   GAAAGTTTCTACAAT                 TTCG CCT CGAA                 TCTTGATGATCTGGA  48 445
   Dhaf_2154 2318768 .. 2318787 -    -8  -4.86001   ATCATCGCATAAAAA            CAGATAAT GGCC ATTATCTG             TGCTATCACGTTATG  86 241
   Dhaf_2152 2316711 .. 2316746 - -19.9  -2.90496   CCTTTTGCGAAAGTA    GAAGCAGGCCGGC-GT TTTGC ACTGCCGGCCTGCTTC    ATTATACTACTTTTT 100 97
   Dhaf_2151 NONE
   Dhaf_2126 2292357 .. 2292381 -  -8.5  -5.38321   AAATACCATAAAAAA          TCGCCTTCTGC CGA GCATGAGGCGA          TTTTTTATGGTGCGC 100 108
   Dhaf_2124 2290570 .. 2290602 - -14.4  -3.79473   AGCATAAGACTTAAA     GAGACCATC-CAACA ATAC TGTTGAGATGGTCTC      TAACTTATACATTGA 100 30
   Dhaf_2119 2286556 .. 2286593 -   -15   -4.4261   CTCTTAATAGTAAAA   CAAACGGCGGACCGG ACTGTTGAA CCGG-CCGCCGTTTG   TTAATGGTCTGCTTA 100 78
   Dhaf_2117 NONE
   Dhaf_2116 2283629 .. 2283659 - -14.1  -3.01924   CACTTGTTCTCAATA       GCGGGTTGGAAAC GTCCT GTTTCCAACCCGA       CTCCGCTGCGTGCTT 100 330
   Dhaf_2115 2282366 .. 2282402 - -15.2  -4.13945   AGTCTGATCGCAAAA    GAGGAAGACCTGCTCT GTTTA AGGGCGGGTCTTCCTC    TTTTTACATTGTCAG 100 140
   Dhaf_2110 2276077 .. 2276096 -  -2.1  -2.87319   TTGAATCTAGGAAAG            CCGGATT ACTGGG AATCGGG             ATTCGGGTAGAAGGC  41 11
   Dhaf_2109 2275055 .. 2275079 -  -6.4  -5.49569   GATTAATAGAAAAAA         CCCGGCTCGAC GAAA GTTGAG-CGGG          TTTTTTTCAGGTTGA  91 49
   Dhaf_2105 2269069 .. 2269105 - -17.4   -4.8543   CAAGGCTGACAAAAA    GCGCCTTTATCCCACC ATAAA AGTGGGATAAGGGCGC    TTTTGAGTTAAATAA 100 33
   Dhaf_2101 2264617 .. 2264633 -  -2.1  -3.76125   TGATCTGAATTTAAA              CGCAGGT GTA ACCGCCG              TCAATGGGTAGAATG  51 4
   Dhaf_2100 2263221 .. 2263231 -  -3.2  -3.70674   GGATGAGTGAAAAGA                 CTCC CGT GGAA                 GAACGCATTGCCTCC  53 303
   Dhaf_2096 2257444 .. 2257473 - -15.2  -4.10925   ACAGATCGCCCAAAA       GAAATAACCGCC CCAGAT GGCGGTTATTTC        AGATCTAATCTGCTG 100 46
   Dhaf_2095 2255638 .. 2255661 -  -5.2  -4.70117   AAGCCAAGAAACAAA          TCCCGGAAGC CTCC GATTCCGCGA           ATTGGCCAAAGCGGG  75 381
   Dhaf_2093 NONE
   Dhaf_2092 2253868 .. 2253878 -  -2.4  -3.86524   ATAGCGGGTTACAAA                 GGGC CTT GCCG                 GCTGGAGCAGCTTTC  52 58
   Dhaf_2089 2252329 .. 2252354 -  -7.7  -4.80167   TATCAAAAAGCAAAA         TCCCTCAAAACA CTG CGTT-TGAGGGA         TTTTCTGCTCCAAAT  91 56
   Dhaf_2081 2243889 .. 2243909 -  -5.3  -4.25104   GGCTGCTGATGAAAA            GCCTGATCC TCC GGAGCAGCC            GCAATGCTCATTAAA  66 490
   Dhaf_2070 NONE
   Dhaf_2069 2231872 .. 2231915 -    -6  -4.89477   CCTGCAATAAGAAAA GGACCTGTGGAAA-CCCTTGC GGA GAAGGGGCTTTCTACAGGTCT TTTTGAGTTTGTTTC  78 64
   Dhaf_2046 NONE
   Dhaf_2045 2205397 .. 2205439 -  -5.6  -2.97188   TTAGAGCACGAGAGA CTGCGAGAGCACGAGAGTCC GTGTG GGACCC-CGTGCTCTAGG-G CGCTTAGATCAATCG  54 34
   Dhaf_2043 NONE
   Dhaf_2042 NONE
   Dhaf_2041 2200587 .. 2200599 -  -5.5  -4.26903   GGCAGGGCATCAAAA                TGCCC TGC AGGCA                ATGAAGATCTGTCAG  66 49
   Dhaf_2022 2173698 .. 2173723 -  -9.1  -5.72254   CTAAATAATAAAAAA         TGAAGCAGGTT GTTT AACTTGCTTCA          TTTTTTTAGACCTTT 100 23
   Dhaf_1989 NONE
   Dhaf_1963 2113820 .. 2113853 - -15.4  -2.70003   GGATTAGAATAATAG     GGAAGACCTGCTCT TTTTGG AGGGCAGGTCTTCC      TTTGTACACATGCCC 100 79
   Dhaf_1956 NONE
   Dhaf_1955 NONE
   Dhaf_1954 2102310 .. 2102355 - -24.4  -3.41745   TTTGCATAAGATCAA GATAAGGCCCTTGACACTTCC TGCCG GGAAG-GTCAAGGGCCTTATC GTTTACTTGGGCACG 100 63
   Dhaf_1952 2100287 .. 2100298 -    -3  -4.64676   CTATGTGGAACAAAA                GATA AAGA TATC                 AGTAGCGTTGCATTG  65 195
   Dhaf_1950 NONE
   Dhaf_1949 NONE
   Dhaf_1948 2093818 .. 2093856 - -14.7   -5.1615   GGAATATGCAAAAAA  GCCTGCCCATGA-TACGG ATAC CCGTAATCAAGGACAGGC   TTATACCTGCGGTGC 100 362
   Dhaf_1947 NONE
   Dhaf_1946 NONE
   Dhaf_1945 2090685 .. 2090702 -  -4.8  -4.72986   GATTGCCATGAAAAA             CGGCGCG GATAT CGC-CCG             GGATATCGCCGATGT  73 368
   Dhaf_1942 2087394 .. 2087436 - -23.7  -3.36671   AGGGGAATGTGACAA CCAAAGACGGACTATCGGC GTAAA GCTGATAGTCCGTCTTTGG CATTTTGAGGGGCAA 100 58
   Dhaf_1938 2081962 .. 2081997 - -16.2  -4.91084   CATCTAATAATAAAA    GCACTCCCTGTCCGCT CAAA ACCGGATAGGGAGTGC     TTGCTTACAGGTAAC 100 40
   Dhaf_1935 NONE
   Dhaf_1934 2070387 .. 2070399 - -10.5  -2.92389   TAATGTATCTATATA                GGCGC ACG GCGCC                GGCTGTTTACAGTTC  76 32
   Dhaf_1933 2069363 .. 2069401 - -19.1  -5.10154   AGTGAAAAGGAAAAA   TTGAAGCCTAAGATCGG TTTTC CCGTTCTTAGGCTTCAA   TTTTTCCTGAATTAT 100 397
   Dhaf_1929 2065978 .. 2065993 -  -7.5  -3.53563   ACATTGGTGCGGAAA              CGGGG GTCAAT CCCCG               GGATACTGCGGCGGA  66 113
   Dhaf_1903 2040030 .. 2040069 - -21.1   -3.5394   AAACCCGTGCCGAAA  GAAAGAGACGCAACAAA ACAAGG TTTGTTGCGTCTCTTTC   TTTCGTATTATTTAT 100 78
   Dhaf_1899 2033680 .. 2033726 -  -6.8  -2.63301   CAGATTCGGATAGTA TCCTCCTTTGCCTAAGCCTCACC GGAA AACG-GGC-T-GGCAAAGGAGGA TTTTCCCGAACATGC  56 61
   Dhaf_1898 NONE
   Dhaf_1897 NONE
   Dhaf_1896 NONE
   Dhaf_1895 2029379 .. 2029428 - -12.9  -3.99592   AGGCAGGAGGAGAAA CCAGGGGCCGTTGCTTACGAACT AACC AGTTCGTGAACAACGGCCCTTTT TTGCTTGTTTATGGG 100 109
   Dhaf_1867 1993957 .. 1993986 - -17.9  -3.86935   TAAGTATTACAATAA       GGCTGCCGACCAA TTAC CCGGTCGGCAGCC        TATGCTTGTTCGCCC 100 59
   Dhaf_1866 NONE
   Dhaf_1865 1991113 .. 1991137 -  -8.4  -3.64915   GTGGATAAAGGAGAA          CGGGTGGGCC TTGTG GGCCCCTCCG          GCTATGGTAAAAGCA  71 525
   Dhaf_1854 1978478 .. 1978507 -  -3.7   -4.4767   CTACTTATTATAAAA       GAAACTATCGGACT AAC AATTCGA-AGTTTC       TTTTTTTTATTTTAT  65 253
   Dhaf_1851 1975981 .. 1976006 -  -6.9  -4.79352   GCACCGACAAGAAAA         TAATGAACGCA AATT TGCGCTCGTTA          TCGGTTTAGTCGATA  82 524
   Dhaf_1843 1970377 .. 1970414 - -14.2  -3.12327   TCGTTATACTCAACA   GGAAACACCTGCGGCA GAATTA TACCGCAGGCGTATCC    GCTGATGGTTTACTT 100 35
   Dhaf_1842 1968440 .. 1968466 - -12.4  -2.81936   ACAGGAGAAAATGGA         GGCTATGGAC TGGGTTT GTCCATAGCC         CAAACCATCATCCGC  80 387
   Dhaf_1831 1959394 .. 1959424 -  -2.8  -5.63517   CCTTGAAACAAAAAA      GCTGAAAACTTTAC TTGGG GTAA-G-TTTCAGC      TTTTTTATTGTTGGA  84 105
   Dhaf_1830 1958316 .. 1958333 -  -4.1   -3.4285   GGAGCTAATCTACAA             CTCTACG CGTA CGCAGAA              CAGTAAACATGGCTG  52 443
   Dhaf_1826 1954900 .. 1954929 -  -7.9  -4.67038   TCTGGAAAATCAAAA       GAAGCCC-CTAGCA TCC TGCTGGCAGGCTTC       TTTGTCGTGCATCTG  86 51
   Dhaf_1801 1927173 .. 1927209 -  -7.2  -3.83026   CCTGCCGATATGAAA    CTTCAGAGCGGATGCC TGCGC GGCATCCGCTCTTTCA    ATAAAAAGCTTAAAA  70 35
   Dhaf_1792 NONE
   Dhaf_1791 NONE
   Dhaf_1790 1914431 .. 1914476 - -15.6  -2.62668   TATCACTGAACTAAT CCGCCC-TAAGACCC-CTGCCT CTAT AGGCAGCGGGTTTCAAGGGCGG TAAGTCCAGTATAGA 100 46
   Dhaf_1789 1913454 .. 1913473 -  -7.8   -4.7497   GCCATCCAGGAAAAA            GCGGGG CTGAACTC CCCCGC             CAACGGTATTTGCTT  85 343
   Dhaf_1784 NONE
   Dhaf_1783 NONE
   Dhaf_1782 NONE
   Dhaf_1781 1907110 .. 1907128 -  -2.2  -3.53224   GACCGGCTGCGGAAA             CTCCCCGG CCT CCGGCACG             ACCGCAGAACCTACC  47 352
   Dhaf_1778 1904211 .. 1904221 -  -3.2   -2.8806   AAATTCTTTCACATA                 GTAG TGT CCAC                 AGTCTTCAGCAGGTA  43 8
   Dhaf_1777 1903298 .. 1903312 -  -4.3   -3.4529   ACAGTATGACCAGAA               TGTAC AGAAG GTACA               ACCATCACTTAAAGA  52 34
   Dhaf_1776 1902821 .. 1902836 -  -4.6  -3.34962   TGCCATAGTTTATAA              CCCTGC CAGC GCACGG               ATTTCATCATCGTTT  53 4
   Dhaf_1775 1902539 .. 1902554 -  -6.1  -5.58454   GGCAGAGCAAAAAAA              CAGCC GGTTAG GGCTG               CTTTGGATGATACAT 100 58
   Dhaf_1769 NONE
   Dhaf_1768 1897733 .. 1897746 -  -4.5  -3.25942   ACCTCCTTACAGGAA               CTGCC CCGT GGCAA                AATAAACCCCAAAGC  53 3
   Dhaf_1767 1896213 .. 1896236 -   -14  -3.31157   GAATTATTAGATTAA          GCACTGAACA ACTG TGTTCAGTGC           TTGTTTGCAATTTGA 100 19
   Dhaf_1765 1894146 .. 1894160 -  -2.8  -3.21276   CTCTGCCGGATAAGA               CCTTTT CGA AAGAGG               AGCGGCGCTATTTAG  45 207
   Dhaf_1748 1875469 .. 1875479 -  -5.4  -3.09288   CAGTGCTGAAGAAAG                 GGAA ATC TTCC                 GAAAGGTCCTGGAGC  51 261
   Dhaf_1723 1847725 .. 1847736 -  -5.8  -3.55444   GCTTTAGCCGCCAAA                GCAG GGGG CTGC                 GTCATGAGTGTTCCC  59 179
   Dhaf_1718 1841471 .. 1841501 - -15.6  -4.95155   CGTATATGATAAAAA       GTCATGACAGTGGC CTA ACCACTATCATGAC       TTTATTTACTAAAAG 100 46
   Dhaf_1717 1839927 .. 1839937 -  -6.8   -3.5882   GACAGTATCCTGAAA                 TCCG TGG CGGA                 ATGCATCAGGTGCAG  65 316
   Dhaf_1713 1833021 .. 1833059 - -19.6  -4.88388   ATAAGTTGACAAAAA   GACTGCCGCCAAGGCCCT ATT AAGGCTTAGGCGGCAGTC   TTTGTATCTTAAGAA 100 60
   Dhaf_1711 1830015 .. 1830032 - -10.5  -3.67634   CAGCACTCCAAAACA             GCCGCCG CTTC CGGCAGC              CCCTGCCCATCGAAG  79 415
   Dhaf_1709 1824815 .. 1824830 -    -6  -5.27023   AGGGGAAAAATAAAA              CCGTCC CAGG GGCCGG               GGCTTGTGGTTGCTT  89 516
   Dhaf_1696 1808417 .. 1808455 - -13.2  -4.36554   GAGGATTACAATAAA   GAGCCTCTCATCGTAG TCTAATT CTGCGATGAGGGGCTC   TTTTTAAAATCTGCT 100 76
   Dhaf_1695 1807373 .. 1807396 - -15.3  -4.74132   ATAGTGGAGGAAAAA          GAGCGCCGG GGAAGT CCGGCGCTC           TTTTTAAAGGGGAAC 100 40
   Dhaf_1686 1799185 .. 1799235 -  -4.1  -5.32565   TAAGTAATTAAAAAA CACAAAGGCATTGATAAACTC TGGAATAAG GCGTTCAGCGATACCTTTGTG TTTTTTATAGTCCGA  81 43
   Dhaf_1677 1792458 .. 1792468 -  -2.4  -4.41844   AAAATGCCTAGAAAA                 GCCG TCA CGGA                 AAATAAATACGTCAT  60 496
   Dhaf_1660 1774865 .. 1774902 - -22.1  -4.15669   AATTTAGAAACTAAA   GACTGCCGCCAAAGCCC ATCA AGGCTTAGGCGGCAGTC    TTTGTGTCCTTAAAG 100 93
   Dhaf_1657 1769277 .. 1769305 - -12.5    -4.386   GAATCGTTGACAAAA        GGCATCGGAACCT AAA AAGTTCTGATGCC        TTAGTTGTTTTTCCT 100 67
   Dhaf_1654 1767249 .. 1767279 -  -2.6  -5.07971   GAAAATAAGCAAAAA       CAAGGCCGAA GAAGTGCAGAT TTTGGCCTTG       TTTTTTATCTGATTC  70 78
   Dhaf_1647 1760531 .. 1760548 - -12.7  -4.11371   GAACAGTGCTGAAAA             GGCAGCG AATC CGCTGCC              TTTAAACACTATCCT 100 40
   Dhaf_1646 1758333 .. 1758388 - -13.6  -5.18357   GAACGGAGCAAAAAA TAAGGGACCGCAGCG-TCT-TCAGAT TGTCTT ATCTGATAGAGCGCTGGGGTCCCTTT TGGATTATTTTAGTG 100 35
   Dhaf_1645 1757236 .. 1757251 -  -6.2   -5.0538   TGGGATGTGAAAAAA              TCTATG TCAA CATAGA               TTATGTAAAACCAGG  85 476
   Dhaf_1628 NONE
   Dhaf_1627 NONE
   Dhaf_1626 1737441 .. 1737469 - -11.2  -4.26076   CTATCCTGATCAAAA        CCAGATCCTTAT AAGGA ATAAAGATCTGG        TTTTCAATATTAATG 100 51
   Dhaf_1623 NONE
   Dhaf_1622 1731789 .. 1731846 - -24.2   -2.6621   ACTACAGGGAAACAG TATACTATTTTAAAACACAGTTC-TCC ATGTA GGATGAACTGTGTTTTAAAATAGTATA CTGGGATTCAAAAAT 100 86
   Dhaf_1621 NONE
   Dhaf_1620 1729257 .. 1729267 -  -5.4  -2.57132   TGTCTGCGGCACAAG                 GCAA ACG TTGC                 AGACAGCTTTGCATC  48 398
   Dhaf_1618 1726733 .. 1726791 - -24.5  -3.83502   TATCTCCACAGTAAA GGAACGACGGTATGAGACCTGAACATTTC ATC AAAATGTTCAGGTCTCATACCGTCGTT-- TTATGCTCAAACCGA 100 60
   Dhaf_1616 NONE
   Dhaf_1612 NONE
   Dhaf_1611 NONE
   Dhaf_1610 1717429 .. 1717460 - -20.3  -3.67026   AAAAATGAGTGTAAA      GGCACCCTACGCT GAATGA AGCGTAGGGTGCC       TGATTTGTTTTCGGC 100 41
   Dhaf_1607 1716005 .. 1716060 -  -2.1  -3.29406   CAAAATAAAAAATAG GAAAAGACATTAGCGTGAGTTGATACC GGGA GGTAAAGA-TG-CGCTAATGTCTTTTC TTTTTATAAAGCTGA  45 124
   Dhaf_1596 1703935 .. 1703955 -  -8.3   -5.1675   TCACGCACGAAAAAA            GCACCGA AAACTAA TCGGTGC            CTGTCACATCTATGG 100 296
   Dhaf_1582 1689445 .. 1689475 -  -7.7  -4.56133   TCTGAATAATTAAAA       GCCCCGATTTT TCAAGACAG AAAATCGGGAC       TCTAGTGTTTCTGTT  82 490
   Dhaf_1571 1678161 .. 1678177 -  -2.1  -4.13767   TCGGCTATTTTAAAA              TTCGCCG TTT CGGGGAT              GGACTCATCTAGATG  55 175
   Dhaf_1549 1653134 .. 1653159 - -15.5  -3.81488   TCCCTGGAAAGAGAA         CAGGCCAGGAA ACGG CTCCTGGCCTG          TAGGGATTCAATTAA 100 111
   Dhaf_1547 1651974 .. 1652005 - -13.8   -4.6644   AATAGAGCGTAAAAA      TACTAAAGGCCAGC GTTT GCTGGCCTTTAGCG       GCAGTTATTTATCGT 100 34
   Dhaf_1546 1650071 .. 1650089 -  -3.7   -3.6363   ATCACCAGAAAGGAA             CCCCCGG CGACT CCGGATG             TGGATGTCTATGCCA  53 113
   Dhaf_1516 1614481 .. 1614501 -  -6.1  -3.21276   CTCTCCTGTACAATA            CAAAGCTGA ATG CCTGCTTTG            AAAGGCATGAAAGCT  57 102
   Dhaf_1506 NONE
   Dhaf_1505 1600202 .. 1600236 - -12.3  -3.66643   GAAAGCAAATGACAA    CAAGAGGGCATCTCAA TAAT TGGAGA-GCCCTCTTG     TTCTTTAAGGGAAAT 100 77
   Dhaf_1487 1582556 .. 1582566 -    -4  -3.04715   GAGGGTTGGTAAAAT                 CAAA CAT TTTG                 GATCACCTCCACTTT  47 14
   Dhaf_1486 NONE
   Dhaf_1485 1580803 .. 1580825 -  -7.7  -4.57209   ATAGCAATGAGAAAA          GCCGC-CCTC AGCT GAGGAACGGC           TCTTTCTTTATGAGT  82 55
   Dhaf_1483 1579230 .. 1579246 -  -5.8  -2.79796   CTTTATCCTACCAGA             GC-CCGG GGCA CCGGTGC              CGGTTGGGCCGCCGG  52 207
   Dhaf_1470 1561639 .. 1561678 -  -4.3  -2.90941   TATGAACGAGGAAAT  TTTAGGGCTCCTTAACAC GGATT GTGT-AAGGAGCCCTTTG  GTTTATTCTGTGGGG  47 28
   Dhaf_1468 1559432 .. 1559467 - -14.2  -4.87291   GACCCGAATGAAAAA    GCGGTTAGGACTTCAT GCTA ATGAAATCTTAACCGC     TTAAATTTTTGTAAT 100 51
   Dhaf_1451 1545673 .. 1545700 -  -9.2  -3.04144   TTTTTAGGGGGAATA        GCGGGGACTA TTGGAGTG TAATCCCCGC         TTGCTTCAATATGGA  71 5
   Dhaf_1450 1545216 .. 1545232 - -10.1  -5.52079   ATAGGAAAAGAAAAA              GCAGCCC TTA GGACTGC              TTTACTGAATACCAA 100 27
   Dhaf_1449 1543301 .. 1543335 -  -5.1  -4.36863   TGAATACAAAAAATA    TCTTAA-CGTGTCTGC CGAA GCAGCCACGATTAATA     CCGATAAATTGAAGC  69 404
   Dhaf_1444 1539874 .. 1539889 -    -6  -3.54424   GGCCAGCCCCTGAAA              CCCCGC CCTC GCCGGG               TGGCAGCAGAACAGT  59 147
   Dhaf_1435 1532378 .. 1532421 -  -7.6  -5.36441   TTTTTATAGAAAAAA GATTGG-CCCACATGTGTA TCTAATC TACACGTGTGTGTCCAATC TTTCAAATGGTCAAG 100 36
   Dhaf_1407 1514309 .. 1514360 -  -8.9  -2.94976   AATGCCTGAAATAAG TGAGACTCGTGTT-GC-GATGTGGC TATA GCCAATTTTGCTAACACGAGTCTCA ATTTTTAGAGGTTTC  68 85
   Dhaf_1383 1488349 .. 1488360 -  -2.2  -4.30719   GGGTTTTATAAGAAA                TCCG TTGG CGAA                 GATGCCTAAAGCATC  58 40
   Dhaf_1368 1475640 .. 1475669 -  -5.8  -4.86385   ATCGGTAAAAATAAA       GAAGACC-CAAGC CGTTT GCTTTCGGTCTTC       TTAGTTTTCAGGCCT  78 33
   Dhaf_1367 NONE
   Dhaf_1366 NONE
   Dhaf_1365 1472988 .. 1473031 -  -5.6   -5.0916   TTTCTAATATAAAAA TTATAG-CATGGTTATTTTAA TTT TCAAAACTACCATGGCTACAA TTTTTACATAATCAG  85 85
   Dhaf_1364 1472541 .. 1472574 -  -2.5   -4.9934   ATAATATGAGAAAAA    TGGCA-G-CTACCCT GGTGTA AGGGTGGTCGTGCCA     TCTTTAATAGATTAG  70 93
   Dhaf_1363 1471736 .. 1471768 -  -9.8  -2.90913   AATCTATAAATATGA      GCGTCTGCCCCA ACCAAGTCA CGGGGCAGGCGC      TTTTTCTATCGGCAA  73 31
   Dhaf_1361 1468516 .. 1468561 - -32.3  -2.71731   GGCAGGGGTGAATCA GGGGGACAGGTACCATTATTC ATCT GAATAATGGTACCTGTCCCCC TGATTCACTTATTGA 100 34
   Dhaf_1343 1450655 .. 1450671 -  -2.2  -4.26903   TGGATGTCACGAAAA              TACCGG AGGTG CAGGTA              GGGGATGTGGTTACC  57 349
   Dhaf_1337 NONE
   Dhaf_1336 1443290 .. 1443311 -  -9.5  -3.85698   GCTCCGCCGCAGAAA           CATACGGGT CTGT ACCCATATG            ATTTATGGGCTGCCG  79 473
   Dhaf_1331 NONE
   Dhaf_1330 1439600 .. 1439639 -  -9.5  -4.30844   ATTGCACTATGAAAA TGCTCCCT-GAGAA-GAGG TAAA CCTGATTCTCCAGGGAGCA  TTGTTTGTTATCAGC  88 47
   Dhaf_1327 1434157 .. 1434174 - -10.5  -5.75538   CCTAAAAAAGAAAAA             GCCGGCG ATTT CGCCGAC              TGAGTAAAGGTATAA 100 48
   Dhaf_1326 1432352 .. 1432386 -   -19  -5.48213   TATCTAAAATAAAAA     TGTGATAAGAAAAGTT GAC AACTTTTCTTATCACA     TGGTGAAAAATTTTT 100 65
   Dhaf_1325 NONE
        tnaA 1429246 .. 1429294 - -18.1   -4.4078   GTTTGTCAATGAAAA GGAGGGAAGCCCGGAGCCCTATC GAC AATGGGGTTCCGGGCTTCCCGCT CAGTATATTACTCGA 100 33
   Dhaf_1323 1428680 .. 1428706 - -12.3   -5.5112   TGCATTAATAAAAAA         CAGCCGCGACT AAAAA AGTCGTGGCTG         CTGTTTCCTATGTTA 100 38
   Dhaf_1322 1427161 .. 1427179 - -11.7  -3.18869   GAAGAAACTAGTTAA             GGAGGGG GATTG CCCCTCC             TTTTTTCTGTCTAAA  84 64
   Dhaf_1320 NONE
   Dhaf_1315 1417852 .. 1417898 - -10.4  -4.53648   GATACAAAACAGAAA CTCCCGATGGAAA-GGTCTATG TGAGT CACAGACCATTTTCA-CGGGAG TTTTAATCTACCTTA 100 81
   Dhaf_1291 1389122 .. 1389175 - -18.5    -2.924   TAAGTGTTTATAAAC TCAAACAGGAGCTTTTCAGCAGATC CACG AAGATGCTGAAAAGCTCCTGTTTAA TTCTACATCAATGGG 100 28
   Dhaf_1240 NONE
   Dhaf_1239 1333156 .. 1333169 -  -8.1  -3.81958   AGTGGTAAACAAAGA               CCGCT GATA AGCGG                TGGGAGGAAGATTCT  72 142
   Dhaf_1235 1329638 .. 1329671 - -21.8  -4.93296   GGATGAGCAGAAAAA     CACCCCGCTCCCGG GCTGGA CCAGGAGCGGGGTG      TTGAGCAGCTTGGGC 100 76
   Dhaf_1232 NONE
   Dhaf_1231 NONE
   Dhaf_1230 1324805 .. 1324828 - -13.2  -6.38492   AGTAATAAAAAAAAA          CGAATAGGGG AAAA CCCCTACTCG           TTAAAGTATAAATTA 100 68
   Dhaf_1229 1323608 .. 1323623 -  -3.2  -3.14878   TTTTCTAATCGAATA              TTGGAC AACT GACCAA               ACGCTTTAATTACAG  46 101
   Dhaf_1228 NONE
   Dhaf_1227 1320282 .. 1320299 - -14.1  -3.77196   CGAGTATTTAGCAAA             CGGGCCG TAGT CGGCCCG              TTTGCAGTTTTGATG 100 56
   Dhaf_1226 1319540 .. 1319554 -  -4.2  -4.29073   GAAGAATTGAAGAAA               GCCGAA AAT TTCTGC               ATTGCCTGAAACACC  63 125
   Dhaf_1225 1318405 .. 1318434 - -15.1  -3.72141   ATAGTCATATGCAAA       GACCGAAACGGGT AAGT ACTCGTTTCGGTC        TTAAGGTTACAATTA 100 109
   Dhaf_1224 1317897 .. 1317909 -  -3.3  -3.14564   CCATTGGTTGATTAA                TCCTC TTT GAGGT                TACAGCACGCATTCA  46 9
   Dhaf_1223 NONE
   Dhaf_1222 NONE
   Dhaf_1221 1316374 .. 1316404 - -14.2  -2.68532   TGTAAACGGATATGA       GAAAAGAGACCG TACACAC CGGTCTCTTTTC       AGTAAAGGCTATGAC  95 69
   Dhaf_1199 1296557 .. 1296576 -   -10  -4.41047   AGCTTGTAAGTAAAA            GGAGACCC ACTT AGGTCTCC             TTTTATCAAGAAGTG  93 63
   Dhaf_1191 NONE
   Dhaf_1190 1286991 .. 1287005 -  -7.1  -3.89226   GAGATAAAAAGAAGA               GAGGG GCAGT CCCTC               ATATAGCTAAAGTCA  70 69
   Dhaf_1189 1285168 .. 1285180 -  -3.4  -4.46212   CTGTTGATTAGAAAA                CGAA TGTTT TTCG                TTTAAAGCTCAAGGA  63 27
   Dhaf_1188 1284358 .. 1284396 - -14.8  -3.45571   CTCCGGAAATAGTAA   TCCCCCTGGATTGA CTCTTGTCTGC TCAATCCAGGGGGA   TTTTTGTTTTTTATG 100 56
   Dhaf_1178 NONE
   Dhaf_1177 NONE
   Dhaf_1176 1271209 .. 1271236 - -17.1  -5.79526   ACAGTGTAAAAAAAA        CTGCTTCCGGC CATGGT GCCGGAAGCAG         TTTTCAATAAATTCA 100 60
   Dhaf_1175 NONE
   Dhaf_1174 1267901 .. 1267925 - -13.7  -3.89346   CCTGCAGCGGAGAAA          GGTTGGAAACA GGA CGTTTCCAACC          CGCCATTGAGAACAA 100 252
        garR 1266010 .. 1266039 -  -4.4  -4.62904   AAATAGGGCGAAAAA       TCCAGAATCTGA GACGTT TCAGATTTTGAA        GAAAGTGAAAAGGCC  68 227
   Dhaf_1171 1264893 .. 1264945 - -21.7  -4.84527   TTCACAGATCAAAAA TTCGGCCGTTTTG-GATTGACTCA TCTAGC TGAGTCGATCTCAAAACGGCCGAA TTTTCATTTAGTCCA 100 63
   Dhaf_1165 1258292 .. 1258304 -  -5.5  -2.75294   TCAAACCGTTCAAAG                CCGCT GGG AGCAG                ATTACCAAGGAATCT  49 417
   Dhaf_1163 NONE
   Dhaf_1162 NONE
   Dhaf_1161 NONE
   Dhaf_1160 NONE
   Dhaf_1159 NONE
   Dhaf_1158 NONE
   Dhaf_1157 1251997 .. 1252052 -    -7  -4.66833   TTTCAACTGGAAAAA GAAAAGCAACCTTGGTCCCACTCAA TTAATGT TTAAGTGGT-CCGTGGTTGCCTTTC AGGTTTTGAACAAGA  79 57
   Dhaf_1156 1250327 .. 1250357 -   -12  -5.12707   TGAAAGTTGAAAAAA      GCGGCTGGTCACA ATCCAA TGTGAC-AGCCGC       TTTTTCGGTTAATTT 100 49
   Dhaf_1154 NONE
   Dhaf_1153 1246915 .. 1246927 -  -3.4  -3.42231   AAATAAAATCATGAA                CCTT TAAGC AAGG                GGGACTGAGAGCAGG  49 67
   Dhaf_1147 1240674 .. 1240727 - -11.7  -2.74246   TAAGGAAAGAAAATT GCCCCTGTGCAAATCTGTAATGGTA GATA TACCCTTGCAGAGAGACACAGGGGC GTTCCTTATGAATTG  81 53
   Dhaf_1141 1235341 .. 1235366 - -11.3  -5.02502   GATAGTATATAAAAA         GAACTCTGAGT AATG ACTCAAAGTTC          TTCATTGACGATGTA 100 50
   Dhaf_1125 1218456 .. 1218477 -  -9.5   -4.2243   ATAAACAGGCGAAAA           CGCATCCGCA ATT TG-GGATGCG           TTTTTGTTTGGAAAC  85 96
   Dhaf_1118 NONE
   Dhaf_1117 1210486 .. 1210497 -  -2.2  -3.75051   TACCAATGGAAAACA                TGCC AAAG AGCA                 AGCCTATAAAGCCAA  51 58
   Dhaf_1116 1208917 .. 1208927 -  -6.8   -3.6268   GAACTGAAATCAGAA                 GCCT TTC AGGC                 ATTTAGTATTGATGG  63 292
   Dhaf_1109 1199577 .. 1199616 - -10.2  -4.94168   ATAGAATAAAAGAAA  TATGCCCGGAAAATCGAAG CAA CATCAAT-TTCCAGGCATA  TTTTTATGTCAGGTT 100 60
   Dhaf_1108 1198466 .. 1198480 -  -2.1  -2.55585   TTTTAAAATATATAT              CCG-CA TTCA TGTCGG               TTATTTTTTTTGACC  39 26
   Dhaf_1107 1197682 .. 1197729 - -16.6  -3.33395   GCATACAACAATACA GTCCCGGAAAAATCA-GACTAAG AAC CTAAGTCACAATTTTTCCGGGAC ATACGAGATTAAGGG 100 96
   Dhaf_1106 NONE
   Dhaf_1105 1196529 .. 1196560 -  -2.4  -4.65895   TGCTGTATCTAAAAA      GTGTGC-AAATAG GGATAAT CTATTTCGCACTC      AGCCAGTTTTTTTAT  63 37
   Dhaf_1104 1195374 .. 1195386 -  -2.7  -3.08032   CTCCTTGTAAAATGA                CTCAT TGA ATAAG                CGCCTCCTTAAATCT  44 207
   Dhaf_1103 NONE
   Dhaf_1102 NONE
   Dhaf_1101 NONE
   Dhaf_1100 1190404 .. 1190444 - -13.3  -3.29147   CCTAATACAATTTAA  TGAGCGGCAGATTGAATCC TTT GGGCTCAGTTTGCCGCTCA  TCGTCTTTGTTCCTC 100 83
   Dhaf_1099 1189534 .. 1189545 -  -2.2  -4.20932   AATATTGACTGAAAA                CG-GC CAT GCTCG                TCCCCTCCTCCTTCG  55 62
   Dhaf_1098 1188722 .. 1188733 -  -2.2  -3.16742   GGTAAGGTTCAGGAA                GCTA TGAG CAGC                 AGGCCGCCGGATAAT  43 77
   Dhaf_1097 1187821 .. 1187835 -  -2.8  -3.10464   TCATTAACTCTAACA               CTCG TGTCAAC CGAG               AAACGGTCAACTTCT  44 50
   Dhaf_1096 1186560 .. 1186574 -    -5  -3.23393   TCTCATTGCAGAATA               TAACCC TTA AGGTTA               ATCGCGGCGAAAAGA  50 444
   Dhaf_1091 NONE
   Dhaf_1090 1182577 .. 1182613 - -17.5  -3.98842   CATAACAGTTATAAA   GGGAGCAAGC-CTTGC CTATGT GCAAGTGCTTGCTCCC    TTTGCGTGTTTTTGC 100 63
   Dhaf_1084 1176914 .. 1176945 -  -8.1  -5.20216   TACACTATTAAAAAA      TGCTAAAGGCACTC GTTTA GAGTGCCTTT-GCT      AGTTTTCTTTGTATG  95 10
   Dhaf_1076 1168851 .. 1168863 -  -2.6    -3.737   GAAGCTCGCATGAAA                GAGC TTGAC GCCC                TGTATGTGAATGAGC  51 206
   Dhaf_1071 1166289 .. 1166322 - -12.5   -4.7629   CCATTAATGTAAAAA     CGGCTGAACACGTTCC AAT GAACCGTGT-CAGCCG     TTGTGTTCTCCACTT 100 49
   Dhaf_1070 1164847 .. 1164875 -   -19  -3.86524   ATACCCTTTTATAAA        GCCCTCTTCAGG TTTTT CCTGAAGAGGGC        TCTTTTCGGGTCATA 100 55
   Dhaf_1062 1156086 .. 1156105 -  -3.6  -3.94877   ACTGCTGAAGAAGAA            GAGATG GGCCTGGA CATCTC             CCTCCATGGCGAAGA  55 311
   Dhaf_1046 1139646 .. 1139662 -  -7.2  -3.04792   GCACTATCTGTAATA              GCCCGC AATCA GCAGGC              CAGGTCGGCAATGCA  61 122
   Dhaf_1037 1132727 .. 1132769 -   -18  -4.73448   ATAGATAGTCAAAAA TAGTACAGCCAGCAGATC GATTAAA GATTTGCTGGCTGTACTA TTTTATTTCCTATGT 100 28
   Dhaf_1035 NONE
   Dhaf_1034 1130686 .. 1130717 - -14.6  -3.32343   GGCACATGTTTAGAA      GGCTCTAAAAGCTT CGTA ATGCTTTTAGAGCC       TTCATATTTCTATAA 100 52
   Dhaf_1032 1129088 .. 1129125 - -13.3  -2.94924   CTTTCAGTGATAAAG   TCAGCCCGCCGGGTCCC CAAA AGGAAGCGGCGGGCTGC    TTGTTGTGCCTGGGC 100 63
   Dhaf_1030 1126525 .. 1126556 -   -16   -2.9732   GTTTAATGCAAATGA      GACCGTT-CCCGGTA TTC CACCGGGGAACGGTC      GTTTCTTTCGGACAG 100 98
   Dhaf_1014 1105839 .. 1105852 -  -3.1  -3.46285   AAAGATAAAAGCCAA               GGTAA CATT TCACC                CTATAGCGTAAGCGG  49 61
   Dhaf_1011 1098175 .. 1098210 - -16.4  -4.31688   AATATTAATCTAAAA    TTGCCTGGA-TCTTCGC TCA GCAAAGATTCCAGGCAA    TTTTTTTAACTGATT 100 43
   Dhaf_1003 1089819 .. 1089841 -  -9.2  -4.65895   TCTTTCAGTGAAAAA           GGACTGTC TGGTCAG GACAGTCC           TTTTGGGCTAAAGAT 100 77
   Dhaf_0998 1085047 .. 1085060 -  -2.3  -2.71712   CCCCCTGCTTCAAAT               CGGCT TTAA AGCAG                GGGTTAGCTATATAA  40 140
   Dhaf_0997 1084523 .. 1084580 - -12.2   -3.2032   CCCTCATAGCAAAAG GGTTTGGCCTAAATGCTCC--CCCTCCC TTTA GGGAAAGTCGGATCATCTGGGCCAAACC CTTGACATTCTGGAT  86 73
   Dhaf_0996 1082914 .. 1082946 - -11.3  -4.12188   CGAGCATGCTTAAAA      GGAGAAACCCGCGTC ATC AACGATGGTTTCTCC      TTTTATACCGTAATC 100 70
   Dhaf_0993 1078675 .. 1078714 - -16.5  -4.84529   GGATAAAGCCAAAAA  GGAGTATCGCCCTGCTC GATCAT GAGCAGGGCGATGCTCT   TTTTTATGCCTTGCC 100 68
   Dhaf_0978 1066984 .. 1067020 -  -8.8  -5.64421   ATGCTAAAGAAAAAA   CAGGTCTAAAGGCGGGA AGTA TCCCGCCTTTAG-CTTT    CTATCCGGTGGTGTT 100 158
   Dhaf_0971 1061407 .. 1061419 -  -4.1  -3.34895   TGGAGTTTGAATGAA                CCCTA TGG TAGAG                GAGGGGACCGATTAT  51 430
   Dhaf_0953 1047772 .. 1047787 -    -6  -3.54424   GGCCAGCCCCTGAAA              CCCCGC CCTC GCCGGG               TGGCAGCAGAACAGT  59 147
   Dhaf_0944 NONE
   Dhaf_0943 1035219 .. 1035242 -    -6  -2.85699   AGTGAGTTACCAAAC          CACAGCTGAA CAGC TTCAACAGTG           CATTCAATCTTTACG  52 350
   Dhaf_0939 1030736 .. 1030765 - -12.3  -5.48514   AGGAATAAACAAAAA       GCTGCAAACCGCCT AAA AAG-GGTTTGCAGC       TTTCGTATTTAAGAG 100 108
   Dhaf_0934 1027721 .. 1027756 -  -7.7  -4.20531   TATAGCCATCGAAAA    GCACAATAACATCACC ATTGG GGTGGTGT-ATCGTGC    AGTCAATTCCCAAAC  75 108
   Dhaf_0924 1017250 .. 1017262 -  -3.3  -4.63928   AGACTATGTTAAAAA                GTAGC TTT GCGAC                ACTCCTTTATTTAGA  65 59
   Dhaf_0923 1015869 .. 1015904 - -10.5  -4.25566   AAGAAGCATGGAAAA    GGCCACTGATACATC TTTGTG GATGTATTGGTGGCC     TTCTTTTCGATTGCG 100 131
   Dhaf_0911 NONE
   Dhaf_0910 NONE
   Dhaf_0909 NONE
   Dhaf_0908 1000534 .. 1000551 - -14.1  -5.37593   TCGTAAATGAAAAAA             CGCGGCC ATCG GGCCGCG              TTTGGTTTGACAGAA 100 74
   Dhaf_0907 NONE
   Dhaf_0906 NONE
   Dhaf_0905  997908 ..  997955 -  -9.1  -2.98823   CTTTGGGGAGATAGA GCGTAAGCGTCCTCACCCCGCC GTTAT GGCGAAGAGAGGACGCTTT-GA ATTAGTATCGGTACC  68 45
   Dhaf_0903  994529 ..  994576 - -17.9  -4.70266   AAGATGAGGCAAAAA GGGAGCTGTTGCACTGTGAAC AAAATA GTTCGCAATGTAACAGCTCCC TTTAAATTGAGAGAA 100 202
   Dhaf_0900  990849 ..  990885 - -11.1  -4.17186   TAAAACAAAAGAGAA    GTAGAGTTTAAGTTC GTCAGTT GAACATAAACTCTAC    TTTTTAGGCTTAAGC  93 64
   Dhaf_0898  988938 ..  988996 - -16.4  -3.09635   ATCTTTATCAGCTAA TTACAATAAAAGTACGGGACAAAGGT TTATTGT ACCTTGCTCCCGTACTTTTATTGTGA TTAAGAAAAGGTAGG 100 65
   Dhaf_0891  981226 ..  981236 -  -6.8  -3.87815   CCCTATCTTGAGAAA                 GCCA GGT TGGC                 TACCTCCTTTTTACC  66 435
   Dhaf_0889  979844 ..  979867 - -11.6  -5.26316   CTATCCCATAAAAAA          GGGGCCGGCC TGTG GGGCAGCCCC           TTAGGGTCAAAACTA 100 46
   Dhaf_0870  962176 ..  962186 -  -5.4  -2.66964   TTATTCATTACACCA                 TCCT CTA AGGA                 ACTATGGTCACAGGG  49 19
   Dhaf_0869  961213 ..  961240 - -16.4  -4.42653   AGTTTATTTATAAAA        GATGGCACACCC TATG GGGTGTACCATC         ATAGTTATGTCCATA 100 30
   Dhaf_0868  960041 ..  960084 - -11.8  -4.31164   GTTATATAAGACAAA TGTAGGGAATGACCCTGTGT TCTT ACGCAAGGGTATTCCCTACA TTCTCAATTTATCGG 100 65
   Dhaf_0867  959132 ..  959154 -    -7   -3.4252   CGTTATGCAGCACAA           CCCTTTCTTC TGG GAAGTAAGAG           GCAGCCATTTCGTCT  62 401
   Dhaf_0861  953455 ..  953506 -    -9  -3.56837   TTGTAAAGACTACAA CTAAGTGGTAGAG-A-GGATTTCC CGGAAC GGATATCCATACTCTACCACTTGG TTTTTTATGAGGGAA  73 55
   Dhaf_0858  950563 ..  950591 -  -7.6   -4.2803   CATCTCAACTCAAAA       GACCGATT-AGAA ATTA CTCTTAATCGGTC        TTTGCTCATTATCGA  79 58
   Dhaf_0856  949799 ..  949826 -  -4.2  -4.00526   AAGGGCATAAGCAAA        CCCTGAA-GAC GTCTTTA GTCATCCAGGG        TTTTGGGCTTTTAAG  59 69
   Dhaf_0855 NONE
   Dhaf_0854 NONE
   Dhaf_0853 NONE
   Dhaf_0852  947196 ..  947230 -  -3.8  -4.98531   CGTTGAAATTAAAAA   GAGGCAC-A--CTTTCC TGAG GGAAAGACTTGTGCCTC    TTTTTAATGATTTAA  73 37
   Dhaf_0846 NONE
   Dhaf_0845 NONE
   Dhaf_0844 NONE
   Dhaf_0843  937904 ..  937920 -  -2.3  -2.53213   TAATTGGCCAAGCGA              TAATAAC GTA GATATTA              ACTATGCAGGAACAG  39 202
   Dhaf_0839  934835 ..  934872 -  -5.5  -6.04953   ATAGAAATAAAAAAA   CCGTGGCGCTAACAG GGAGAAAT CCGATAGCATCACGG    GCTTATTTAACTATA 100 162
   Dhaf_0838  933767 ..  933814 -  -9.2  -3.09772   CTAAATGTTCAAAAT GGAACCCGTGGCA-GAATCGG CAGTGAT CCGGTTAATGCCACGGGTTTC TATATGCTTTCTGGC  72 40
   Dhaf_0831  923368 ..  923396 -  -3.3  -3.36968   GAGTTAATTTCATAA        TGTTAGTCT GAAAATAGAAT AGACTAACA        GAATTTCGGAGCATA  47 53
   Dhaf_0830  922854 ..  922876 -  -9.9    -5.243   TAAACGATCAAAAAA          GGCC-CGAGA TCGA TCTCGAGGCC           TGCATTCGCTGTTTC 100 132
   Dhaf_0828  920604 ..  920631 - -10.6  -4.69214   TATGTAAGAAATAAA        GAAGGCGTAACC ATGA GGTCACGCCTTT         ACTAATTTCGAGGGG 100 69
   Dhaf_0827 NONE
   Dhaf_0826 NONE
   Dhaf_0825 NONE
   Dhaf_0824 NONE
   Dhaf_0823  915852 ..  915879 -  -5.6  -4.72556   CGAAAAATTATAAAA        GACGAGACTT CCATCCTT ACGTCTCGTC         TTTCTACTTCATTAT  75 64
   Dhaf_0818  911204 ..  911215 -  -4.4  -2.78384   CCCTCTTCCACCAGA                GCTT AGAC AAGC                 TCTGATATTTTTTTA  46 16
   Dhaf_0817  909659 ..  909670 -  -4.4  -5.88197   GCAAATAGAAAAAAA                TCTC TTGA GAGA                 AGCCGAAGCAACCGC 100 329
   Dhaf_0814  906059 ..  906078 -  -3.4  -3.90291   ATGGGGGGAACGAAA            CGCTCGGC GCTT GCCAGGCA             AACTCTCTTTAATAT  53 204
   Dhaf_0813  904529 ..  904539 -  -3.2  -4.63184   AATTTACTTTAAAAA                 TCCC GTT GGAA                 AATTGCCGCAGACTC  65 8
   Dhaf_0812  903398 ..  903419 - -13.1  -4.67038   TCGTGAAAATGAAAA           GAATCCCCA CGTC TGGGGATTC            TTCATTGCGCAAGCC 100 494
   Dhaf_0810 NONE
   Dhaf_0809  899308 ..  899339 - -11.9  -4.43351   ATATGTGAAAAATAA      TATAAACACAAGA TAAGCT TCTTGTGTTTATA       CAGAGCACTGATGAT 100 63
   Dhaf_0808  897645 ..  897656 -  -4.4  -3.63991   CACGAGCCTTAATAA                GAGT TAAA ACTC                 ATGAAGATAAGTCCG  54 78
   Dhaf_0807  896116 ..  896151 - -14.8  -4.90266   GTTATGAATTAAAAA    CCGCTGTCCAATGAAC TTAA GTCCCTTGAACAGCGG     TCTTTTTAATGTTTA 100 42
   Dhaf_0806 NONE
   Dhaf_0805 NONE
   Dhaf_0804  892632 ..  892650 -  -5.3  -5.73339   ATAAGGATAAAAAAA             GTTCCCT TAAGT AAGGAAC             TTTTTTTGTTTGCCT  91 61
   Dhaf_0802  890476 ..  890509 -  -6.7  -4.25681   AGGCAATGTAAGAAA     GCCCTGAAATACAGC AAAT ACTGTGATTCAAGGC      TAAGGAATCTAAAAC  74 91
   Dhaf_0801  889973 ..  889999 - -12.3  -4.68593   GTCACTATGTAAAAA         GGAATGGCCTC TATAT GGGGCCATTCC         TTAGTTTTTCGAACC 100 43
   Dhaf_0793  880706 ..  880747 - -21.1  -4.27316   TCGGTCAATGGAAAA GGCCGTTGTTCACTGAACG CTAA CATTTAGTGAACAACGGCC  TCTTTTGATGCAAGG 100 57
   Dhaf_0792  879170 ..  879199 - -10.8  -4.66953   GGAACATGTTAAAAA       GCACGATAATGG ATTGAG CCATTGTCGTGC        TTTTTAATATTCAGG 100 496
   Dhaf_0789  876263 ..  876274 -  -4.4  -3.20723   TTGTTACGAATGCAA                TGCA ACGC TGCA                 CTGAATAAAGCTACA  49 124
   Dhaf_0788  875797 ..  875850 - -18.4   -4.9792   GAGGGGACATAAAAA GAGGAGACAGGTACCATGATTCAA CTTAAT TTGAATCACGGTACCTGTCCCCAT TTTTCACTTTTAACC 100 35
   Dhaf_0786 NONE
   Dhaf_0785 NONE
   Dhaf_0784  871750 ..  871802 - -33.9  -3.77832   GTGCAAAGTTAATAA GCAAATAAGCCAGGGGGCGTTCA TGTGTGG TGAACGCCCCCTGGCTTATTTGC TGAGGAAAACCGATT 100 121
   Dhaf_0782  869500 ..  869523 -  -2.5  -3.61398   CCGGCTTTTTAATAA          CTCAACT TTCGCACCCC AGTTGAG           GGAATAGAGCCTTGA  50 3
   Dhaf_0780  868986 ..  869012 - -17.4  -4.10331   GTAAGGAAGTATAAA         GGGAGCACATCA TGG CGATGTGCTCCC         TTTTCATGGAATCAA 100 45
   Dhaf_0773  859548 ..  859562 -    -7  -3.67141   ATAAGCGGAGTTAAA               CGGCAG TTT CAGCCG               CGGCATTTTGTCCGG  65 6
   Dhaf_0768 NONE
   Dhaf_0767  853229 ..  853280 -  -9.9   -4.0274   TTCAGCATGAAACAA GACGGTTGATATTTG-GA-CATT TCACAAAG AATGTTCTCAAACATCAACCGTC ATTCAATTGGTGAAA  86 70
   Dhaf_0766 NONE
   Dhaf_0765 NONE
   Dhaf_0764  851025 ..  851044 -  -5.1  -3.16191   GTATAGTCCGACTAA            TATGACA ACAGTG TGTCATA             TTAAGAATAGTTTTT  53 26
   Dhaf_0763 NONE
   Dhaf_0762 NONE
   Dhaf_0761  848720 ..  848757 - -17.9  -3.88787   CTATATCTCGATAAA   CAAAGAGGCCGATTTGT GTAA ACAAGCCGGCCTCTTTG    CTATTCGGGGCCATT 100 172
   Dhaf_0752  837057 ..  837083 -   -21  -4.43208   ATAGTTCCAAACAAA         TAGTCCTCGGGG CCA CCCCGAGGACTA         TTTTAATTAGTGTAT 100 47
   Dhaf_0750  835298 ..  835327 - -14.5  -2.54999   AGTAAATCGATGAAT       CAAAAAACCAGGCC TCA GGCCTGGTTTTT-G       CATAGTTTCTTTTAT 100 42
   Dhaf_0732  817396 ..  817412 -  -7.9   -3.2964   AAAGTTTCCGGAGAA              GATCGCC GGA GGCGCTC              TGGACACGCAAAAAT  64 506
   Dhaf_0729  813555 ..  813572 -  -8.3  -3.26596   CCGAAAGCAATTGAA             TGCCCCG GTTG CGGGGCC              AAGAATTTAGTCGCC  64 513
   Dhaf_0724  810765 ..  810811 - -15.5  -4.11371   GAAGACTCGCCAAAA GCAAGATGATCACGCTGCGTAT CAGG ATATA-AGCGTGATCATCTTGC TTTTGGCATATCGGG 100 72
   Dhaf_0705  791598 ..  791622 -  -2.2  -3.90464   TTGGAAACAACACAA         GCGG-TTTTAA GATG TTAATAGCCGC          TGTTATCTTCTTTGT  52 131
   Dhaf_0703  789635 ..  789661 -  -8.8   -4.7657   GAAAAAGGTGAAAAA        CACCTGCCGCA AAAGAA TG-GGCAGGTG         TTGGTGTGCATGATA 100 121
   Dhaf_0702  788735 ..  788758 -  -3.1  -4.09117   CCGATCCATAAAGAA          GCCGCCA GGAGCACGAT TGACGGC           TTAGTCGCCGCGCTT  56 71
   Dhaf_0685  771069 ..  771101 - -19.3   -3.4072   GACTGCGGACCACAA      GACCCCGGAGAGA TGTTTGC TCTCTCCGGGGTC      TTGTTTGCGGTCTTG 100 49
   Dhaf_0681  765880 ..  765893 -  -5.9  -4.99043   TGCCTATAAAGAAAA               CCCGG TTCG CCGAG                CTTTACATTTTACGC  82 129
   Dhaf_0678  764024 ..  764057 -   -19  -3.67864   CAATTGAACTTTAAA     GGCTTCCCCAAGAG TTATTT CTCTCGGGGAAGCC      TTTGCTTCATTGAAG 100 69
   Dhaf_0675  761751 ..  761783 - -12.8  -4.06361   TCATATATAAGGAAA     GGCTTCCCG-GGAGT ATGC ACTCTTCGGGAAGCC      TTTTTTGCTCAGTTA 100 34
   Dhaf_0667  747163 ..  747201 -  -3.6  -3.53298   ATGAGGCCAAAGGAA   CGGCGTGGACGAAAATGT ACG ACGTCAGCGACTACGCCG   ACTATTACCGCGCCG  50 404
   Dhaf_0664  744244 ..  744260 -  -5.1  -2.59748   CATCCTGATAATCGA              TCACTTC TGC GATGTGA              ATATTCTCCTGCTGG  49 136
   Dhaf_0663 NONE
   Dhaf_0662 NONE
   Dhaf_0661  740534 ..  740573 - -13.6  -2.92444   ATATGGAAAAAAAGC  TTGTCCAGGACCGCGACA ACGT TGTCGTGTTCCTGGACAT   TGTTTAGGCGGCGGT 100 110
   Dhaf_0660 NONE
   Dhaf_0659  739842 ..  739883 - -13.7  -4.27297   TGAATAAGAAAAAGA CAATGGACCGCCGGCCAAG TGAC CTTAGCCGGCAATCCAAGG  GATTTATTTAAGGCT 100 61
   Dhaf_0656  737990 ..  738027 - -14.3   -4.4891   GTCATCAGCATAAAA   GAGATAGGCGTCATCCC TTTT AGAACAACGCCTATCTC    TTGCCTTTCCGTACC 100 180
   Dhaf_0620  681438 ..  681477 - -13.7  -3.01422   CATGCTGACAAAGGA  TTTGCCGGAAGTGCTTC GCAAAA GAAGTGCTTCCGGCAAA   CTATGTTTGTATCCA 100 46
   Dhaf_0616  675066 ..  675089 - -18.2  -3.92373   TACCGCAGCCATAAA          GAACCCCGCG CAAC CGCGGGGTTC           ATTTTCGTGGCGCAC 100 89
   Dhaf_0605  663120 ..  663153 - -14.7  -3.37765   AAGAACAAGAAGAGA     GGACCGTGTGAAAAT CTTA ATTTTCTCACGGCCC      TTTATCATTAAGGGG 100 109
   Dhaf_0603 NONE
   Dhaf_0602  658528 ..  658583 - -12.3  -3.93638   AATCAACTGGATAAA GGAACACATTAGAGAATAAGACTTGG TTATG CCAAGTCTTATTCTCTAAT-TATAAC GAAACTGCTGCTCGG 100 122
   Dhaf_0599  657445 ..  657497 -  -2.8  -4.81644   GAAAGAAAATGAAAA GAAAAGAACCGTCAAGGCAGAGGCG AATA CCTCTGTGCTTTAACGGTT-TTTCC TTTTGCCGCTTATCC  67 46
   Dhaf_0598 NONE
   Dhaf_0597  656604 ..  656641 - -11.3  -5.24003   AATAAAAACTAAAAA   CCGCCAAGGCAGAGACG AATA CCTCTGTGCCTTAACGG    TTTTTCCTTAACTAA 100 89
   Dhaf_0596 NONE
   Dhaf_0595  654684 ..  654697 -  -2.3  -5.06223   ACAAAGTAAATAAAA               GGAGC ATCA GCTAC                TTCGCTTAAATTATG  68 117
   Dhaf_0594 NONE
   Dhaf_0593  654096 ..  654117 -  -7.3  -5.08178   ATAGACACAGAAAAA           GCCATTGAT GAAA ATCAGTGGC            TTTAAAATGACTTAA  90 73
   Dhaf_0589  651026 ..  651036 -  -8.2   -3.4252   CCTTACTTATCATAA                 GGGG CTG CCCC                 ATGGACTGGCGAATA  66 352
   Dhaf_0577 NONE
   Dhaf_0576  636424 ..  636454 -  -7.7   -3.1372   CATCTTCCATCAAGA      CGCCTG-AAATAAC CGCC GTTATTTCCTGGCG       GGGTACCTGATACAC  63 70
   Dhaf_0575  636263 ..  636303 - -14.9  -3.98113   TAATGACCAATTAAA  GACCAAACCGCTTTCAAAC AAG ACTTAGAAGCGGTTTGGTC  TTTCTTCTTTTTGAT 100 9
   Dhaf_0573  633163 ..  633174 -    -3  -3.92324   CCTTGTAAGATGAAA                GATA GGGG TATC                 AACCAAAGGTTGCCG  56 46
   Dhaf_0572  632014 ..  632031 -  -9.1  -3.10493   TTGCCAATATAGACA             CCAGCGG TAAT CCACTGG              GCTAAATTCCTGGAT  69 240
   Dhaf_0567  625516 ..  625552 - -18.3   -3.9642   AAAGACTTAATTAAA    CAAAATCAACATACCCC TTG GGGGTATGTTGATTTTT    TATTCGTTCACCATT 100 97
   Dhaf_0563 NONE
   Dhaf_0562  621939 ..  621983 -   -11  -5.42862   ATAGCCGTAAAAAAA TACACAACAATAAGGACAAT GTAAA ATTGCCCATATCATTGTGTA ATATCCTTGCATAGA 100 214
   Dhaf_0561 NONE
   Dhaf_0560  620111 ..  620137 -  -7.2  -3.78679   AAAATACGAAGAGAA         TTGCACCGGAGC CTG GCCCTGTTGCAA         TATCCAACAACTGGA  67 103
   Dhaf_0552  610568 ..  610602 - -10.2  -5.09259   GAGGCCAAAACAAAA    GCCCAG-TCTTTGTA GAAAAT TACAAAGAACCGGGC     TTTTTTTTGTAGATA 100 140
   Dhaf_0541 NONE
   Dhaf_0540 NONE
   Dhaf_0539 NONE
   Dhaf_0538 NONE
   Dhaf_0537 NONE
   Dhaf_0536 NONE
   Dhaf_0535 NONE
   Dhaf_0534 NONE
   Dhaf_0533  587902 ..  587923 -  -9.5  -2.98823   CCCTTTTTAGATATA           TCGGAAAAG ACAA CCTTTCCGA            CGTTAAATTGTGAAT  71 171
   Dhaf_0532  586559 ..  586574 -  -6.8  -3.13403   TGTTCCCCATCAACA              TCCCGC CGTT ACGGGA               CCGAAAGGGGGATAT  57 470
   Dhaf_0530  583286 ..  583327 -   -14  -4.83593   AATAAGGACTAAAAA CAAGAATAGACAAGGTGA TTTTTT TCTCCTTGTCTATTCTTA  TTGATTCGTTACTTG 100 68
   Dhaf_0529  580934 ..  580967 - -13.3  -3.98826   GCAGGAAGTCAGAAA     GACAGATACCACG TTTTCCGG CGTGGCATCTGTC      TTTTGCTGCACAAGG 100 80
   Dhaf_0520  571835 ..  571856 -  -7.3  -3.18264   GGCTTCAGCCAGCAA           CTCTATGTC TTGC GGCATAGAG            GCCAGGTTCATGGCG  62 58
   Dhaf_0518  570592 ..  570610 -  -3.2   -2.5632   CAATATATTAGGAAT             TTTATGAG TGA CTAATAAA             TTTAATAGTAACTAT  42 37
   Dhaf_0517  570145 ..  570180 - -11.8  -3.22314   GCCAAAGGAAAATTA    GCCTGCCGCCAAACGT TTTA ACGTCGAGAGGCAGGC     TTTTGGTTCTATACA  86 56
   Dhaf_0514  564280 ..  564318 -   -22  -3.53091   ACTGTCTTCTCGAAA   GATCAAAACAGCGGGG TATCAAG CCCCGCTGTTTTGATC   TTTATGCACTTCCGA 100 120
   Dhaf_0512  563448 ..  563475 -  -4.8  -2.63723   CGTTCAGCAATGAAG        CGTG-CGCTGGAC TGC GTGCAGAGGCACG        AAAGCCATTTATGCC  48 34
   Dhaf_0511  563076 ..  563087 -  -4.4  -4.10331   GGAATGAAGGAGAAA                CTCT AGAG AGAG                 CCGGTTTGTTTCCCT  61 144
   Dhaf_0508  560717 ..  560745 - -12.5  -3.27525   TTCGTTGAAAGCGAA        CGCCTGAGGAA GTCAATT CTCCTCAGGCG        TTTACACTTCACTGT  95 61
   Dhaf_0506  559983 ..  560005 - -11.2   -5.0538   TTGTACGGCAAAAAA           CCGGCGGGAA GAT TCCCCGCTGG           TTTTTATATACCCTA 100 38
   Dhaf_0492 NONE
   Dhaf_0491 NONE
   Dhaf_0490  534659 ..  534689 - -14.1  -3.28712   GCCCTCCTTCTATAA       TGAAAACGGCGGC GGAAG GCCGTCGTTTTCA       TATGCAAATGCTTCT 100 73
   Dhaf_0488  528416 ..  528435 -  -3.4  -3.90291   ATGGGGGGAACGAAA            CGCTCGGC GCTT GCCAGGCA             AACTCTCTTTAATAT  53 204
   Dhaf_0475  513413 ..  513433 -  -3.2  -3.68662   AGATAACAGTCCAAA           GGGGC-CTT ATCC AGGTGCCCC            GGGGCCCGGGCTTAG  53 132
   Dhaf_0467  503042 ..  503061 -   -15  -4.43208   ATATGGTTAAAGAAA            GGCCAGGG GAAT CCCTGGCC             TCATAGTAGTGAGGG 100 62
   Dhaf_0466  501459 ..  501491 - -19.3   -5.2291   AGAGCATAAGAAAAA      CGTAAAGACCTCTGG TAG CCAGTGGTCTTTACG      TTAAGCTTAACCGCC 100 116
   Dhaf_0465  499566 ..  499598 - -12.2  -5.28176   TGGATGCATAAAAAA     CAGGGCATTATCAGC AAGA ACTGATAA-GCCCTG      TTTTCTATTGACAGA 100 120
   Dhaf_0462  495527 ..  495549 - -13.5  -5.31519   ATAGTGAAACAAAAA           GCCAGGTCA TGAAT TGACCTGGC           TTTGCTGTAAAGAGT 100 45
   Dhaf_0461  494609 ..  494622 -  -3.1  -4.03234   TTCGCCTGACATAAA               GTTCC TCCC GAAAC                CAAGATAATTTGTCG  56 128
   Dhaf_0460  493919 ..  493938 -  -4.4  -2.55583   TCAAAATCAACATAG            CTAAAAAG TTAT CTTTTTAA             ATTTAATTTAATAAA  45 33
   Dhaf_0459 NONE
   Dhaf_0458  491771 ..  491824 - -19.3  -3.69605   CTTATCGAAAATCAA TAAAGAAAGATGACCTTAGCCTGCA TTAT TGTAAGATAAGGTCATCTTTCTTTA TTGTGGAATATCATA 100 23
   Dhaf_0411 NONE
   Dhaf_0410  448910 ..  448954 - -21.6  -3.57883   ATAATAGTGCTTAAA GAAGGCGCCCTTCTC-CACCC ATAA AGGTGAGAGGAGGGCGCCTTC TTTGGTTTAATCCAT 100 32
   Dhaf_0391  434103 ..  434123 -  -9.7  -4.38744   ATGGATATAAAATAA            GCCGCATCC TGA AGATACGGC            TGTAACAGATTTTTC  93 109
   Dhaf_0383  424812 ..  424824 -  -2.6  -3.22223   GAAGCTCACCATCAA                GAGC GTTAT GCCC                GCTTGGCCGCTGAAT  45 377
   Dhaf_0381 NONE
   Dhaf_0380  422252 ..  422284 - -11.5  -4.29326   GCTAAAGCTAAGAAA     GCAGCATGGCCATT TTTTCT AATGGC-ATGCTGC      TTTTGTTATTCCTGC 100 31
   Dhaf_0378  418512 ..  418537 -    -9  -4.15543   CAAACATGGGGAAAA         GACTTGGGTC AAAAGA GACCCCAGTC          TATTAACCTGGGAAG  80 402
   Dhaf_0375  415780 ..  415790 -  -2.6  -3.55761   GAGCGACGGGTGAAA                 TTTT GCT AAAA                 TCCCTTTAATTTTTA  48 255
   Dhaf_0371  412079 ..  412123 - -13.7  -3.54721   CAAAAGGGTATAGAA CAGCTCAGTCTGTTCCAGG AAGAGAG CGAGGAACAAACTGAGCTG GATCGAACGGTGGAT  91 213
   Dhaf_0364  401109 ..  401121 -  -3.3  -2.66435   ACGGCCAGCACAGTA                TAGGC TGT GCCGA                GATCAACACTGTGTA  42 187
   Dhaf_0363  400384 ..  400403 -  -6.4  -4.56607   GGATTAAGGATAAAA            CAGCTCAA GGGT TTGAGCAG             GTTTTGGCTGCTGCT  74 10
   Dhaf_0362 NONE
   Dhaf_0361  398704 ..  398719 -    -4  -3.73775   TTGACTTCCACTAAA              CCGATGG ATT CCAT-GG              CTGTGTTTCACTTCC  54 5
   Dhaf_0360 NONE
   Dhaf_0359 NONE
   Dhaf_0358 NONE
   Dhaf_0357 NONE
   Dhaf_0356  395352 ..  395368 -  -9.5  -2.57974   ATGATGACTAACCGA              TCTTCAG TTG CTGAAGA              ACCTGTTTAACCACA  68 1
   Dhaf_0355  394542 ..  394577 -  -9.8  -4.66609   GACGGTATGCAAAAA    GGGGGCGTGT-GGAA AGCTTGG TTCCGACACGCCCCT    CCTTTATGCGGCGAA 100 106
   Dhaf_0354 NONE
        carB  388686 ..  388709 -  -9.6  -5.28942   CATCCGAAACAAAAA          CTTCCCGACA GAGA TGCCGAGAAG           CTAAAAACAACATGC 100 473
   Dhaf_0351 NONE
   Dhaf_0350  385604 ..  385630 -  -4.4  -3.61103   GAACCTGATTGGAAA         CGACGGATAAAG CGG CTATATCCATGG         GCAATCCCTCCTCTG  54 125
   Dhaf_0349  385353 ..  385392 - -14.3   -4.3534   TCGTAAGTACGAAAA  GGCCCCTTGCCAGGGAA AATGAG TTCACCGGCAAGGGGTC   TTTTTAGCTTATAGA 100 64
   Dhaf_0331  366361 ..  366373 -  -3.3  -3.04715   TATCTCCCCCAAAAG                TGCGG TAA CCGGA                AAGACCTCTCGATGT  44 43
   Dhaf_0330 NONE
   Dhaf_0329 NONE
   Dhaf_0328  363683 ..  363704 - -11.6  -3.79533   CAAATTAGTAAAATA           GGCGCTGT GTGAAA ACAGCGCC            TGTGAGCATATGCGT  95 189
   Dhaf_0326  362205 ..  362249 -    -8   -3.5764   AAGCTTATTTTCAAA TCCCTCACTAC-TGGATAAAC GGGT GTTTATCTATGTTGGGAGGGA TTTTTTTGTTCATTT  70 160
   Dhaf_0307  343854 ..  343885 - -10.3  -4.46112   CGTGATTGAAATAAA     GCATCCCAGGAGCCC CGCA GGG-TC-TGGGATGC      TTTTAACGTCAGGAA 100 49
   Dhaf_0305  340003 ..  340020 -  -3.5  -4.08767   TGTACCGGCCCAAAA             CATCG-TA CAG TACCGATG             GTATGCTTTTATTGT  60 163
   Dhaf_0304  338633 ..  338672 -  -9.2  -4.64992   CTGAAAAAATATAAA  GGGAGGAGAGTTCCGGGA TTTG CCCCGAAGCTATCCTCCT   TTAGGCTTCTGGTTT 100 60
   Dhaf_0303  337763 ..  337775 -  -4.8  -2.81133   GACCGACGTACGACA                GTCG CTTGT CGAC                AATATTTGATATAAT  49 112
   Dhaf_0302  336900 ..  336922 - -12.8  -4.72986   TAGGTGCATGAAAAA           GGCGAATTCC TGA AGAATTCGCC           TTTTTCATTGGAACA 100 46
   Dhaf_0293  328335 ..  328345 -  -8.2  -3.96867   GAAAAATAAAAGGAA                 CCCC GGT GGGG                 GTTTTAAGAATTACT  77 36
   Dhaf_0291 NONE
   Dhaf_0290 NONE
   Dhaf_0289 NONE
   Dhaf_0288  320646 ..  320678 - -14.9  -4.78237   TAGTTGATAACAAAA      GGAACTGTCCTGGCT GAG AGGCCGGACAGTTCC      TTCTTTTGGTGCGCC 100 69
   Dhaf_0279 NONE
   Dhaf_0278  310816 ..  310829 -  -6.7   -2.8294   TATTTTTGAGAATGA               GCCTT TAGA AAGGC                AAGCAGGGCTTGTGG  54 487
   Dhaf_0273  307317 ..  307338 - -13.7  -4.90013   TAATTCAATCAAAAA           CTGCGGGCC GGAG AGCCCGCAG            TTAAGTTAAATCCGT 100 31
   Dhaf_0271  304670 ..  304686 -  -2.3  -3.25072   TGCATGACAACGGAA              GAAGTAT ATC ATATTTC              TAAATGCTAGAGAAG  45 56
   Dhaf_0270  303644 ..  303655 -  -2.2  -3.51924   CTTTCATGGATACAA                CCAT TAAT ACGG                 ATAAGGAAGCAGATT  47 87
   Dhaf_0269  303180 ..  303220 - -18.3  -4.55798   TATTGTAAAGGAAAA  GGGCATACCCATCTTGTGC ATA GCACTTGTTGGGTATGCCC  TTCCACTAGGACCAT 100 60
   Dhaf_0265  296917 ..  296960 - -17.6  -3.49618   GGCTGATATAATCAA GGAGCTGCGGAGAGA-GAACC TTA AGTTCACCTTTCCGCAGCTCC TTCGTTTTTTGGACC 100 53
   Dhaf_0247 NONE
   Dhaf_0246  277409 ..  277455 - -16.7  -3.77831   GGATGAATAGGTAAA GGGAGTACCGCCAAACTACTT TGCTC AAGCAGTGGGGCGATACTCCC TTATTACTTTTCAGG 100 54
   Dhaf_0242  274594 ..  274614 - -14.1  -5.07053   AATGATTTTAAAAAA            CACCTTGGA AGT TCCAAGGTG            TTTTTGATCGTGAGG 100 90
   Dhaf_0236  261833 ..  261852 -  -6.5   -3.8505   ACGAACATGATGAAA            GTACACT GTTTAA AGTGTAC             TTTGTCACAGCAGAA  65 247
   Dhaf_0235  259078 ..  259107 - -15.2  -5.28826   AAAGCCCATAAAAAA       GTCCGTGTGAAA ACCAAA TTTCACACGGAC        TTTTTTATGGGCTTT 100 39
   Dhaf_0224 NONE
   Dhaf_0223  242307 ..  242337 - -13.5  -5.64873   CTGAAGAACAAAAAA       GAAGAAGAACCAG ACCTG CTGATTCTTCTTC       ATGTCAAATCACTGT 100 44
   Dhaf_0199  222474 ..  222496 -  -8.5  -5.60993   TGGCGGACAAAAAAA           GATTCTCCC TGAGC AGGAGAATC           TGGGAGCCTTTTCTT 100 202
   Dhaf_0188  208433 ..  208461 -  -5.4  -3.36968   GAGTTAATTTCATAA        TGTTAGTCCG AAAATAAAA CAGACTAACA        GAATTTCGGAATTTC  55 55
   Dhaf_0187  207060 ..  207079 - -10.8  -5.88565   GTGACAAGAAAAAAA            GGTATCTC CCGG GAGATACC             ACTGAAAGAACTCGG 100 305
   Dhaf_0174  191649 ..  191674 - -12.1  -5.63236   AGGTAAAAATAAAAA         TGCAACAAAAT CACA ATTTTGTTGCA          TTTTTTATTTTAATA 100 119
   Dhaf_0170  184114 ..  184150 -  -4.5  -5.46706   ATTTGAAAAGAAAAA   GCCCTAAG-GCAGCAT ATTAAA ATGCTTTGCTTAGGGC    TTTTTAGATCTCTGT  87 46
   Dhaf_0164  177257 ..  177280 - -15.4  -3.61178   GCCAGGTAGTGCAAA          GAGACCATCG ATTA CGATGGTCTC           TTTGCTTTGGGGCAA 100 393
   Dhaf_0126  131366 ..  131412 -   -14  -3.17194   ATGGTCTGAAGTGAA GAAAAGCGCCCTTATCTC-CC GTGTAT GGTGAGATAAGGGCACTTTTT TAGGGGGGGTCTTTC 100 52
   Dhaf_0124  128393 ..  128428 - -10.4  -3.07655   GCCTGTAAAAAAGAG    GGCCTCGCCGACTGTT TTTG AATACTCGGCGAGGCT     TTTGATTAAGCGAAG  77 48
   Dhaf_0118  124071 ..  124122 - -14.7  -3.67052   AGATGGTGAAGACAA CACTCCCCTGC-CTGTTAGCGT GTTTTGAGT ACACTAATAGGGCAGGGGAGTG GTTAAATTTAAATAC 100 112
   Dhaf_0117  123150 ..  123166 -    -8  -2.55545   CTTCCAAGAAGACAG              GGGTGA CAAGT TCACCC              TCCCCATTCGCAGGT  60 20
   Dhaf_0116  122788 ..  122812 - -17.9  -3.14931   GGTAGGCTTTACGAA          GCTGCCGGCAA AAT CTGCCGGCAGC          TTCGCTGTTCAAGCC 100 64
   Dhaf_0109  112039 ..  112065 - -13.8  -4.75174   TACCCAATTTAAAAA         GGAAAGTCGTTC TCT GGACGACTTTCC         TTTCATGTATGATGT 100 41
   Dhaf_0101  103795 ..  103825 -  -2.4  -4.53703   AAAATAATAGGAAAA       TCCCTCTGCGGTAA AAG TGAAAGCAGGGGGA       TTTTTTTAGATGGTA  60 91
   Dhaf_0093   95735 ..   95767 -  -9.2  -5.71712   TTTTAGACAAAAAAA      TCAGAAGTGAGGGA TGAGG TCCCTTCCTTCTGA      TTTTTTGCGTGGATT 100 80
   Dhaf_0083   84558 ..   84569 -  -2.2  -4.07568   CCTCCTCGCCCAAAA                GGAC GTTG ATCC                 ATGCTTTTGATCCGG  55 246
   Dhaf_0081   82893 ..   82903 -  -5.4  -2.60512   CCCAACACCAAGGGA                 CTTG CCT CAAG                 AATATCCGCCCAACC  49 21
   Dhaf_0080   81596 ..   81607 -  -4.4  -3.73224   GGATCGCCGATCAAA                CCAA TCTT TTGG                 CTCTCAATGCCGCCA  55 518
   Dhaf_0077   76267 ..   76292 -  -9.8   -4.9792   TATGTTATACAAAAA         GCAGCAAACC GCTAAG GATTTGCTGC          TTTATTACTAAGTTC 100 66
   Dhaf_0065   65149 ..   65165 -    -8  -4.55887   GCCTAAAAAGAGAAA              GAAGGC TTTAC GCCTTC              TATTATGTAGAATTA  82 82
   Dhaf_0041 NONE
   Dhaf_0040   37931 ..   37957 - -13.8  -3.30159   GTAATCTTTGGACAA         GAGGATGGCC TGAAATT GGCCATCCTC         TTTATGCCGCACTTA 100 38
   Dhaf_0029   27788 ..   27832 - -21.8  -3.55966   GCAGCAAAACACCAA TAAACGGACTTTTCCTATGC ATCCG GCATAGGGAAAGTCCGTTTA TTTTTTCACTGGTGC 100 72
   Dhaf_0028   26565 ..   26587 -  -6.3  -4.11216   TCTTGATTTGCAAAA           GCAGCTG GAGCTGTGT CAGCTGC           TGCAGAGAGTAGTGG  68 329
   Dhaf_0018   17324 ..   17337 -  -3.9  -3.33696   CTGGGGCTCAACGAA               CTATA ATCG TATAG                TTTTCGTTTTGCATC  49 74
   Dhaf_0013   14338 ..   14384 - -21.3  -3.54051   ATAAAGTCGATATAA GAAAAGAGGAGGATAACAC AAGGTATCA GTGTTATCCTCCTCTTTTC TGGCAGGTAATGCCT 100 42
   Dhaf_0011   12559 ..   12600 -  -8.2   -5.5112   TTGATTAACAAAAAA GA-GGAACCATGCA-TCCTC TGGA GAGAATTGCCTGGTTCCATC TTAACGCTTATTTTT 100 33
