aaeA	SSF111369	HlyD-like secretion proteins
aaeR	SSF46785	"Winged helix" DNA-binding domain
aaeR	SSF53850	Periplasmic binding protein-like II
aas	SSF56801	Acetyl-CoA synthetase-like
aas	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
aat	SSF55729	Acyl-CoA N-acyltransferases (Nat)
abgA	SSF53187	Zn-dependent exopeptidases
abgA	SSF55031	Bacterial exopeptidase dimerisation domain
abgB	SSF53187	Zn-dependent exopeptidases
abgB	SSF55031	Bacterial exopeptidase dimerisation domain
abgR	SSF46785	"Winged helix" DNA-binding domain
abgR	SSF53850	Periplasmic binding protein-like II
accA	SSF52096	ClpP/crotonase
accB	SSF51230	Single hybrid motif
accC	SSF51246	Rudiment single hybrid motif
accC	SSF52440	PreATP-grasp domain
accC	SSF56059	Glutathione synthetase ATP-binding domain-like
accD	SSF52096	ClpP/crotonase
aceA	SSF51621	Phosphoenolpyruvate/pyruvate domain
aceB	SSF51645	Malate synthase G
aceE	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
aceE	SSF52922	TK C-terminal domain-like
aceF	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
aceF	SSF51230	Single hybrid motif
aceF	SSF52777	CoA-dependent acyltransferases
ackA	SSF53067	Actin-like ATPase domain
acnA	SSF52016	LeuD/IlvD-like
acnA	SSF53732	Aconitase iron-sulfur domain
acnB	SSF52016	LeuD/IlvD-like
acnB	SSF53732	Aconitase iron-sulfur domain
acnB	SSF74778	Aconitase B, N-terminal domain
acpP	SSF47336	ACP-like
acpS	SSF56214	4'-phosphopantetheinyl transferase
acpT	SSF56214	4'-phosphopantetheinyl transferase
acrA	SSF111369	HlyD-like secretion proteins
acrB	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
acrB	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
acrB	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
acrD	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
acrD	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
acrD	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
acrE	SSF111369	HlyD-like secretion proteins
acrF	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
acrF	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
acrF	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
acrR	SSF46689	Homeodomain-like
acrR	SSF48498	Tetracyclin repressor-like, C-terminal domain
acs	SSF56801	Acetyl-CoA synthetase-like
ada	SSF46689	Homeodomain-like
ada	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
ada	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
ada	SSF57884	Ada DNA repair protein, N-terminal domain (N-Ada 10)
add	SSF51556	Metallo-dependent hydrolases
ade	SSF51338	Composite domain of metallo-dependent hydrolases
ade	SSF51556	Metallo-dependent hydrolases
adhE	SSF53720	ALDH-like
adhE	SSF56796	Dehydroquinate synthase-like
adhP	SSF50129	GroES-like
adhP	SSF51735	NAD(P)-binding Rossmann-fold domains
adiA	SSF53383	PLP-dependent transferases
adiA	SSF55904	Ornithine decarboxylase C-terminal domain
adiY	SSF46689	Homeodomain-like
adk	SSF52540	P-loop containing nucleoside triphosphate hydrolases
aegA	SSF51971	Nucleotide-binding domain
aegA	SSF54862	4Fe-4S ferredoxins
aer	SSF55785	PYP-like sensor domain (PAS domain)
aer	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
aes	SSF53474	alpha/beta-Hydrolases
afuB	SSF161098	MetI-like
afuC	SSF50331	MOP-like
afuC	SSF52540	P-loop containing nucleoside triphosphate hydrolases
agaA	SSF51556	Metallo-dependent hydrolases
agaB	SSF52728	PTS IIb component
agaI	SSF100950	NagB/RpiA/CoA transferase-like
agaR	SSF100950	NagB/RpiA/CoA transferase-like
agaR	SSF46785	"Winged helix" DNA-binding domain
agaS	SSF53697	SIS domain
agaV	SSF52728	PTS IIb component
agp	SSF53254	Phosphoglycerate mutase-like
ahpC	SSF52833	Thioredoxin-like
ahpF	SSF51905	FAD/NAD(P)-binding domain
ahpF	SSF52833	Thioredoxin-like
aidB	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
aidB	SSF56645	Acyl-CoA dehydrogenase NM domain-like
ais	SSF53254	Phosphoglycerate mutase-like
alaS	SSF101353	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
alaS	SSF50447	Translation proteins
alaS	SSF55186	ThrRS/AlaRS common domain
alaS	SSF55681	Class II aaRS and biotin synthetases
aldA	SSF53720	ALDH-like
aldB	SSF53720	ALDH-like
alkA	SSF48150	DNA-glycosylase
alkA	SSF55945	TATA-box binding protein-like
alkB	SSF51197	Clavaminate synthase-like
allA	SSF51182	RmlC-like cupins
allB	SSF51338	Composite domain of metallo-dependent hydrolases
allB	SSF51556	Metallo-dependent hydrolases
allC	SSF53187	Zn-dependent exopeptidases
allC	SSF55031	Bacterial exopeptidase dimerisation domain
allD	SSF89733	L-sulfolactate dehydrogenase-like
allR	SSF46785	"Winged helix" DNA-binding domain
allR	SSF55781	GAF domain-like
alr	SSF50621	Alanine racemase C-terminal domain-like
alr	SSF51419	PLP-binding barrel
alsA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
alsB	SSF53822	Periplasmic binding protein-like I
alsE	SSF51366	Ribulose-phoshate binding barrel
alsK	SSF53067	Actin-like ATPase domain
amiA	SSF53187	Zn-dependent exopeptidases
amiB	SSF53187	Zn-dependent exopeptidases
amiC	SSF53187	Zn-dependent exopeptidases
amn	SSF53167	Purine and uridine phosphorylases
ampC	SSF56601	beta-lactamase/transpeptidase-like
ampD	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
ampG	SSF103473	MFS general substrate transporter
ampH	SSF56601	beta-lactamase/transpeptidase-like
amtB	SSF111352	Ammonium transporter
amyA	SSF51011	Glycosyl hydrolase domain
amyA	SSF51445	(Trans)glycosidases
ansA	SSF53774	Glutaminase/Asparaginase
ansB	SSF53774	Glutaminase/Asparaginase
apaG	SSF110069	ApaG-like
apaH	SSF56300	Metallo-dependent phosphatases
aphA	SSF56784	HAD-like
appA	SSF53254	Phosphoglycerate mutase-like
appY	SSF46689	Homeodomain-like
apt	SSF53271	PRTase-like
aqpZ	SSF81338	Aquaporin-like
araA	SSF50443	FucI/AraA C-terminal domain-like
araA	SSF53743	FucI/AraA N-terminal and middle domains
araB	SSF53067	Actin-like ATPase domain
araC	SSF46689	Homeodomain-like
araC	SSF51215	Regulatory protein AraC
araD	SSF53639	AraD/HMP-PK domain-like
araE	SSF103473	MFS general substrate transporter
araF	SSF53822	Periplasmic binding protein-like I
araG	SSF52540	P-loop containing nucleoside triphosphate hydrolases
araJ	SSF103473	MFS general substrate transporter
arcA	SSF46894	C-terminal effector domain of the bipartite response regulators
arcA	SSF52172	CheY-like
arcB	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
arcB	SSF47384	Homodimeric domain of signal transducing histidine kinase
arcB	SSF52172	CheY-like
arcB	SSF55785	PYP-like sensor domain (PAS domain)
arcB	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
argA	SSF53633	Carbamate kinase-like
argA	SSF55729	Acyl-CoA N-acyltransferases (Nat)
argB	SSF53633	Carbamate kinase-like
argC	SSF51735	NAD(P)-binding Rossmann-fold domains
argC	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
argD	SSF53383	PLP-dependent transferases
argE	SSF53187	Zn-dependent exopeptidases
argE	SSF55031	Bacterial exopeptidase dimerisation domain
argF	SSF53671	Aspartate/ornithine carbamoyltransferase
argG	SSF52402	Adenine nucleotide alpha hydrolases-like
argG	SSF69864	Argininosuccinate synthetase, C-terminal domain
argH	SSF48557	L-aspartase-like
argI	SSF53671	Aspartate/ornithine carbamoyltransferase
argK	SSF52540	P-loop containing nucleoside triphosphate hydrolases
argP	SSF46785	"Winged helix" DNA-binding domain
argP	SSF53850	Periplasmic binding protein-like II
argR	SSF46785	"Winged helix" DNA-binding domain
argR	SSF55252	C-terminal domain of arginine repressor
argS	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
argS	SSF52374	Nucleotidylyl transferase
argS	SSF55190	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
argT	SSF53850	Periplasmic binding protein-like II
aroA	SSF55205	EPT/RTPC-like
aroB	SSF56796	Dehydroquinate synthase-like
aroC	SSF103263	Chorismate synthase, AroC
aroD	SSF51569	Aldolase
aroE	SSF51735	NAD(P)-binding Rossmann-fold domains
aroE	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
aroF	SSF51569	Aldolase
aroG	SSF51569	Aldolase
aroH	SSF51569	Aldolase
aroK	SSF52540	P-loop containing nucleoside triphosphate hydrolases
aroL	SSF52540	P-loop containing nucleoside triphosphate hydrolases
arpA	SSF48403	Ankyrin repeat
arsC	SSF52833	Thioredoxin-like
arsR	SSF46785	"Winged helix" DNA-binding domain
artI	SSF53850	Periplasmic binding protein-like II
artJ	SSF53850	Periplasmic binding protein-like II
artM	SSF161098	MetI-like
artP	SSF52540	P-loop containing nucleoside triphosphate hydrolases
artQ	SSF161098	MetI-like
ascB	SSF51445	(Trans)glycosidases
ascF	SSF55604	Glucose permease domain IIB
ascG	SSF47413	lambda repressor-like DNA-binding domains
ascG	SSF53822	Periplasmic binding protein-like I
asd	SSF51735	NAD(P)-binding Rossmann-fold domains
asd	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
aslA	SSF53649	Alkaline phosphatase-like
aslB	SSF102114	Radical SAM enzymes
asnA	SSF55681	Class II aaRS and biotin synthetases
asnB	SSF52402	Adenine nucleotide alpha hydrolases-like
asnB	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
asnC	SSF46785	"Winged helix" DNA-binding domain
asnC	SSF54909	Dimeric alpha+beta barrel
asnS	SSF50249	Nucleic acid-binding proteins
asnS	SSF55681	Class II aaRS and biotin synthetases
aspA	SSF48557	L-aspartase-like
aspC	SSF53383	PLP-dependent transferases
aspS	SSF50249	Nucleic acid-binding proteins
aspS	SSF55261	GAD domain-like
aspS	SSF55681	Class II aaRS and biotin synthetases
astA	SSF55729	Acyl-CoA N-acyltransferases (Nat)
astB	SSF55909	Pentein
astC	SSF53383	PLP-dependent transferases
astD	SSF53720	ALDH-like
astE	SSF53187	Zn-dependent exopeptidases
atoA	SSF100950	NagB/RpiA/CoA transferase-like
atoB	SSF53901	Thiolase-like
atoC	SSF46689	Homeodomain-like
atoC	SSF52172	CheY-like
atoC	SSF52540	P-loop containing nucleoside triphosphate hydrolases
atoD	SSF100950	NagB/RpiA/CoA transferase-like
atoS	SSF47384	Homodimeric domain of signal transducing histidine kinase
atoS	SSF55785	PYP-like sensor domain (PAS domain)
atoS	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
atpA	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
atpA	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
atpA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
atpB	SSF81336	F1F0 ATP synthase subunit A
atpC	SSF46604	Epsilon subunit of F1F0-ATP synthase C-terminal domain
atpC	SSF51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain
atpD	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
atpD	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
atpD	SSF52540	P-loop containing nucleoside triphosphate hydrolases
atpE	SSF81333	F1F0 ATP synthase subunit C
atpF	SSF81573	F1F0 ATP synthase subunit B, membrane domain
atpG	SSF52943	ATP synthase (F1-ATPase), gamma subunit
atpH	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase
avtA	SSF53383	PLP-dependent transferases
azoR	SSF52218	Flavoproteins
baeR	SSF46894	C-terminal effector domain of the bipartite response regulators
baeR	SSF52172	CheY-like
baeS	SSF158472	HAMP domain-like
baeS	SSF47384	Homodimeric domain of signal transducing histidine kinase
baeS	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
barA	SSF158472	HAMP domain-like
barA	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
barA	SSF47384	Homodimeric domain of signal transducing histidine kinase
barA	SSF52172	CheY-like
barA	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
basR	SSF46894	C-terminal effector domain of the bipartite response regulators
basR	SSF52172	CheY-like
basS	SSF47384	Homodimeric domain of signal transducing histidine kinase
basS	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
bcp	SSF52833	Thioredoxin-like
bcr	SSF103473	MFS general substrate transporter
bcsA	SSF141371	PilZ domain-like
bcsA	SSF53448	Nucleotide-diphospho-sugar transferases
bcsC	SSF48452	TPR-like
bcsZ	SSF48208	Six-hairpin glycosidases
betA	SSF51905	FAD/NAD(P)-binding domain
betA	SSF54373	FAD-linked reductases, C-terminal domain
betB	SSF53720	ALDH-like
betI	SSF46689	Homeodomain-like
betI	SSF48498	Tetracyclin repressor-like, C-terminal domain
bfr	SSF47240	Ferritin-like
bglA	SSF51445	(Trans)glycosidases
bglB	SSF51445	(Trans)glycosidases
bglF	SSF51261	Duplicated hybrid motif
bglF	SSF55604	Glucose permease domain IIB
bglG	SSF50151	SacY-like RNA-binding domain
bglG	SSF63520	PTS-regulatory domain, PRD
bglH	SSF56935	Porins
bglJ	SSF46894	C-terminal effector domain of the bipartite response regulators
bglX	SSF51445	(Trans)glycosidases
bglX	SSF52279	Beta-D-glucan exohydrolase, C-terminal domain
bioA	SSF53383	PLP-dependent transferases
bioB	SSF102114	Radical SAM enzymes
bioC	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
bioD	SSF52540	P-loop containing nucleoside triphosphate hydrolases
bioF	SSF53383	PLP-dependent transferases
bioH	SSF53474	alpha/beta-Hydrolases
bipA	SSF50447	Translation proteins
bipA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
bipA	SSF54980	EF-G C-terminal domain-like
birA	SSF46785	"Winged helix" DNA-binding domain
birA	SSF50037	C-terminal domain of transcriptional repressors
birA	SSF55681	Class II aaRS and biotin synthetases
bisC	SSF50692	ADC-like
bisC	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
blc	SSF50814	Lipocalins
bolA	SSF82657	BolA-like
btuB	SSF56935	Porins
btuC	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
btuD	SSF52540	P-loop containing nucleoside triphosphate hydrolases
btuE	SSF52833	Thioredoxin-like
btuF	SSF53807	"Helical backbone" metal receptor
btuR	SSF52540	P-loop containing nucleoside triphosphate hydrolases
cadA	SSF53383	PLP-dependent transferases
cadA	SSF55904	Ornithine decarboxylase C-terminal domain
cadC	SSF46894	C-terminal effector domain of the bipartite response regulators
caiA	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
caiA	SSF56645	Acyl-CoA dehydrogenase NM domain-like
caiB	SSF89796	CoA-transferase family III (CaiB/BaiF)
caiC	SSF56801	Acetyl-CoA synthetase-like
caiD	SSF52096	ClpP/crotonase
caiE	SSF51161	Trimeric LpxA-like enzymes
can	SSF53056	beta-carbonic anhydrase, cab
carA	SSF52021	Carbamoyl phosphate synthetase, small subunit N-terminal domain
carA	SSF52317	Class I glutamine amidotransferase-like
carB	SSF48108	Carbamoyl phosphate synthetase, large subunit connection domain
carB	SSF52335	Methylglyoxal synthase-like
carB	SSF52440	PreATP-grasp domain
carB	SSF56059	Glutathione synthetase ATP-binding domain-like
cbl	SSF46785	"Winged helix" DNA-binding domain
cbl	SSF53850	Periplasmic binding protein-like II
cbpA	SSF46565	Chaperone J-domain
cbpA	SSF49493	HSP40/DnaJ peptide-binding domain
cbrA	SSF51905	FAD/NAD(P)-binding domain
cca	SSF81301	Nucleotidyltransferase
cca	SSF81891	Poly A polymerase C-terminal region-like
cchA	SSF143414	CcmK-like
cchB	SSF159133	EutN/CcmL-like
ccmA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ccmE	SSF82093	Heme chaperone CcmE
ccmG	SSF52833	Thioredoxin-like
ccmH	SSF48452	TPR-like
cdd	SSF53927	Cytidine deaminase-like
cdh	SSF54197	HIT-like
cfa	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
chaB	SSF140376	ChaB-like
chaC	SSF110857	Gamma-glutamyl cyclotransferase-like
chbA	SSF46973	Enzyme IIa from lactose specific PTS, IIa-lac
chbB	SSF52794	PTS system IIB component-like
chbF	SSF51735	NAD(P)-binding Rossmann-fold domains
chbF	SSF56327	LDH C-terminal domain-like
chbG	SSF88713	Glycoside hydrolase/deacetylase
chbR	SSF46689	Homeodomain-like
chbR	SSF51182	RmlC-like cupins
cheA	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
cheA	SSF47384	Homodimeric domain of signal transducing histidine kinase
cheA	SSF50341	CheW-like
cheA	SSF55052	CheY-binding domain of CheA
cheA	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
cheB	SSF52172	CheY-like
cheB	SSF52738	Methylesterase CheB, C-terminal domain
cheR	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
cheR	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
cheW	SSF50341	CheW-like
cheY	SSF52172	CheY-like
cheZ	SSF75708	Chemotaxis phosphatase CheZ
chiA	SSF51055	Carbohydrate binding domain
chiA	SSF51445	(Trans)glycosidases
chpA	SSF50118	Cell growth inhibitor/plasmid maintenance toxic component
chpB	SSF50118	Cell growth inhibitor/plasmid maintenance toxic component
chpR	SSF89447	AbrB/MazE/MraZ-like
chpS	SSF89447	AbrB/MazE/MraZ-like
cirA	SSF56935	Porins
citA	SSF103190	Sensory domain-like
citA	SSF55785	PYP-like sensor domain (PAS domain)
citA	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
citA	SSF55890	Sporulation response regulatory protein Spo0B
citB	SSF52172	CheY-like
citC	SSF52374	Nucleotidylyl transferase
citC	SSF55729	Acyl-CoA N-acyltransferases (Nat)
citE	SSF51621	Phosphoenolpyruvate/pyruvate domain
citF	SSF100950	NagB/RpiA/CoA transferase-like
clcA	SSF81340	Clc chloride channel
clcB	SSF81340	Clc chloride channel
cld	SSF160355	Bacterial polysaccharide co-polymerase-like
clpA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
clpA	SSF81923	Double Clp-N motif
clpB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
clpB	SSF81923	Double Clp-N motif
clpP	SSF52096	ClpP/crotonase
clpS	SSF54736	ClpS-like
clpX	SSF52540	P-loop containing nucleoside triphosphate hydrolases
clpX	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
cls	SSF56024	Phospholipase D/nuclease
cmk	SSF52540	P-loop containing nucleoside triphosphate hydrolases
cmr	SSF103473	MFS general substrate transporter
cmtA	SSF52794	PTS system IIB component-like
cmtB	SSF55804	Phoshotransferase/anion transport protein
coaA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
coaD	SSF52374	Nucleotidylyl transferase
coaE	SSF52540	P-loop containing nucleoside triphosphate hydrolases
cobB	SSF52467	DHS-like NAD/FAD-binding domain
cobC	SSF53254	Phosphoglycerate mutase-like
cobT	SSF52733	Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
cobU	SSF52540	P-loop containing nucleoside triphosphate hydrolases
codA	SSF51338	Composite domain of metallo-dependent hydrolases
codA	SSF51556	Metallo-dependent hydrolases
cof	SSF56784	HAD-like
copA	SSF55008	HMA, heavy metal-associated domain
copA	SSF56784	HAD-like
copA	SSF81653	Calcium ATPase, transduction domain A
copA	SSF81665	Calcium ATPase, transmembrane domain M
corA	SSF143865	CorA soluble domain-like
corA	SSF144083	Magnesium transport protein CorA, transmembrane region
cpdA	SSF56300	Metallo-dependent phosphatases
cpdB	SSF55816	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
cpdB	SSF56300	Metallo-dependent phosphatases
cpsB	SSF51182	RmlC-like cupins
cpsB	SSF53448	Nucleotide-diphospho-sugar transferases
cpsG	SSF53738	Phosphoglucomutase, first 3 domains
cpsG	SSF55957	Phosphoglucomutase, C-terminal domain
cpxA	SSF47384	Homodimeric domain of signal transducing histidine kinase
cpxA	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
cpxR	SSF52172	CheY-like
crcA	SSF56925	OMPA-like
creB	SSF46894	C-terminal effector domain of the bipartite response regulators
creB	SSF52172	CheY-like
creC	SSF103190	Sensory domain-like
creC	SSF47384	Homodimeric domain of signal transducing histidine kinase
creC	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
crp	SSF46785	"Winged helix" DNA-binding domain
crp	SSF51206	cAMP-binding domain-like
crr	SSF51261	Duplicated hybrid motif
csdA	SSF53383	PLP-dependent transferases
csgD	SSF46894	C-terminal effector domain of the bipartite response regulators
csiE	SSF63520	PTS-regulatory domain, PRD
csiR	SSF46785	"Winged helix" DNA-binding domain
csiR	SSF48008	GntR ligand-binding domain-like
cspA	SSF50249	Nucleic acid-binding proteins
cspB	SSF50249	Nucleic acid-binding proteins
cspC	SSF50249	Nucleic acid-binding proteins
cspD	SSF50249	Nucleic acid-binding proteins
cspE	SSF50249	Nucleic acid-binding proteins
cspF	SSF50249	Nucleic acid-binding proteins
cspG	SSF50249	Nucleic acid-binding proteins
cspH	SSF50249	Nucleic acid-binding proteins
cspI	SSF50249	Nucleic acid-binding proteins
csrA	SSF117130	CsrA-like
cueO	SSF49503	Cupredoxins
cueR	SSF46955	Putative DNA-binding domain
cusA	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
cusA	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
cusA	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
cusB	SSF111369	HlyD-like secretion proteins
cusC	SSF56954	Outer membrane efflux proteins (OEP)
cusR	SSF46894	C-terminal effector domain of the bipartite response regulators
cusR	SSF52172	CheY-like
cusS	SSF47384	Homodimeric domain of signal transducing histidine kinase
cusS	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
cutA	SSF54913	GlnB-like
cutC	SSF110395	CutC-like
cvrA	SSF116726	TrkA C-terminal domain-like
cvrA	SSF56176	FAD-binding/transporter-associated domain-like
cyaY	SSF55387	Frataxin/Nqo15-like
cybB	SSF81342	Transmembrane di-heme cytochromes
cydC	SSF52540	P-loop containing nucleoside triphosphate hydrolases
cydC	SSF90123	ABC transporter transmembrane region
cydD	SSF52540	P-loop containing nucleoside triphosphate hydrolases
cydD	SSF90123	ABC transporter transmembrane region
cynR	SSF46785	"Winged helix" DNA-binding domain
cynR	SSF53850	Periplasmic binding protein-like II
cynS	SSF47413	lambda repressor-like DNA-binding domains
cynS	SSF55234	Cyanase C-terminal domain
cynT	SSF53056	beta-carbonic anhydrase, cab
cynX	SSF103473	MFS general substrate transporter
cyoA	SSF49503	Cupredoxins
cyoA	SSF81464	Cytochrome c oxidase subunit II-like, transmembrane region
cyoB	SSF81442	Cytochrome c oxidase subunit I-like
cyoC	SSF81452	Cytochrome c oxidase subunit III-like
cysA	SSF50331	MOP-like
cysA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
cysB	SSF46785	"Winged helix" DNA-binding domain
cysB	SSF53850	Periplasmic binding protein-like II
cysC	SSF52540	P-loop containing nucleoside triphosphate hydrolases
cysD	SSF52402	Adenine nucleotide alpha hydrolases-like
cysE	SSF51161	Trimeric LpxA-like enzymes
cysG	SSF51735	NAD(P)-binding Rossmann-fold domains
cysG	SSF53790	Tetrapyrrole methylase
cysG	SSF75615	Siroheme synthase middle domains-like
cysH	SSF52402	Adenine nucleotide alpha hydrolases-like
cysI	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
cysI	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
cysJ	SSF52218	Flavoproteins
cysJ	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
cysJ	SSF63380	Riboflavin synthase domain-like
cysK	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
cysM	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
cysN	SSF50447	Translation proteins
cysN	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
cysN	SSF52540	P-loop containing nucleoside triphosphate hydrolases
cysP	SSF53850	Periplasmic binding protein-like II
cysQ	SSF56655	Carbohydrate phosphatase
cysS	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
cysS	SSF52374	Nucleotidylyl transferase
cysU	SSF161098	MetI-like
cysW	SSF161098	MetI-like
cytR	SSF47413	lambda repressor-like DNA-binding domains
cytR	SSF53822	Periplasmic binding protein-like I
dacA	SSF56601	beta-lactamase/transpeptidase-like
dacA	SSF69189	Penicillin-binding protein associated domain
dacB	SSF56601	beta-lactamase/transpeptidase-like
dacC	SSF56601	beta-lactamase/transpeptidase-like
dacC	SSF69189	Penicillin-binding protein associated domain
dacD	SSF56601	beta-lactamase/transpeptidase-like
dacD	SSF69189	Penicillin-binding protein associated domain
dadA	SSF51905	FAD/NAD(P)-binding domain
dadA	SSF54373	FAD-linked reductases, C-terminal domain
dadX	SSF50621	Alanine racemase C-terminal domain-like
dadX	SSF51419	PLP-binding barrel
dam	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
damX	SSF110997	Sporulation related repeat
dapA	SSF51569	Aldolase
dapB	SSF51735	NAD(P)-binding Rossmann-fold domains
dapB	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
dapD	SSF51161	Trimeric LpxA-like enzymes
dapE	SSF53187	Zn-dependent exopeptidases
dapE	SSF55031	Bacterial exopeptidase dimerisation domain
dapF	SSF54506	Diaminopimelate epimerase-like
dbpA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
dcd	SSF51283	dUTPase-like
dcm	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
dcp	SSF55486	Metalloproteases ("zincins"), catalytic domain
dctA	SSF118215	Proton glutamate symport protein
dcuR	SSF52172	CheY-like
dcuS	SSF103190	Sensory domain-like
dcuS	SSF55785	PYP-like sensor domain (PAS domain)
dcuS	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
dcuS	SSF55890	Sporulation response regulatory protein Spo0B
ddlA	SSF52440	PreATP-grasp domain
ddlA	SSF56059	Glutathione synthetase ATP-binding domain-like
ddlB	SSF52440	PreATP-grasp domain
ddlB	SSF56059	Glutathione synthetase ATP-binding domain-like
ddpA	SSF53850	Periplasmic binding protein-like II
ddpB	SSF161098	MetI-like
ddpC	SSF161098	MetI-like
ddpD	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ddpF	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ddpX	SSF55166	Hedgehog/DD-peptidase
deaD	SSF52540	P-loop containing nucleoside triphosphate hydrolases
dedD	SSF110997	Sporulation related repeat
def	SSF56420	Peptide deformylase
degP	SSF50156	PDZ domain-like
degP	SSF50494	Trypsin-like serine proteases
degQ	SSF50156	PDZ domain-like
degQ	SSF50494	Trypsin-like serine proteases
degS	SSF50156	PDZ domain-like
degS	SSF50494	Trypsin-like serine proteases
deoA	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
deoA	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
deoA	SSF54680	Pyrimidine nucleoside phosphorylase C-terminal domain
deoB	SSF143856	DeoB insert domain-like
deoB	SSF53649	Alkaline phosphatase-like
deoC	SSF51569	Aldolase
deoD	SSF53167	Purine and uridine phosphorylases
deoR	SSF100950	NagB/RpiA/CoA transferase-like
der	SSF52540	P-loop containing nucleoside triphosphate hydrolases
dfp	SSF102645	CoaB-like
dfp	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
dgoA	SSF51569	Aldolase
dgoD	SSF51604	Enolase C-terminal domain-like
dgoD	SSF54826	Enolase N-terminal domain-like
dgoR	SSF46785	"Winged helix" DNA-binding domain
dgoR	SSF48008	GntR ligand-binding domain-like
dgoT	SSF103473	MFS general substrate transporter
dgsA	SSF46785	"Winged helix" DNA-binding domain
dgsA	SSF53067	Actin-like ATPase domain
dgt	SSF109604	HD-domain/PDEase-like
dhaH	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
dhaH	SSF52009	Phosphohistidine domain
dhaH	SSF53062	PTS system fructose IIA component-like
dhaH	SSF55594	HPr-like
dhaK	SSF82549	DAK1/DegV-like
dhaL	SSF101473	DhaL-like
dhaR	SSF46689	Homeodomain-like
dhaR	SSF52540	P-loop containing nucleoside triphosphate hydrolases
dhaR	SSF55785	PYP-like sensor domain (PAS domain)
dicA	SSF47413	lambda repressor-like DNA-binding domains
dicC	SSF47413	lambda repressor-like DNA-binding domains
dinB	SSF100879	Lesion bypass DNA polymerase (Y-family), little finger domain
dinB	SSF56672	DNA/RNA polymerases
dinG	SSF52540	P-loop containing nucleoside triphosphate hydrolases
dinI	SSF54857	DNA damage-inducible protein DinI
dipZ	SSF52833	Thioredoxin-like
dipZ	SSF74863	Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
djlA	SSF46565	Chaperone J-domain
djlB	SSF46565	Chaperone J-domain
djlC	SSF46565	Chaperone J-domain
dkgA	SSF51430	NAD(P)-linked oxidoreductase
dkgB	SSF51430	NAD(P)-linked oxidoreductase
dksA	SSF109635	DnaK suppressor protein DksA, alpha-hairpin domain
dksA	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
dld	SSF55103	FAD-linked oxidases, C-terminal domain
dld	SSF56176	FAD-binding/transporter-associated domain-like
dmsA	SSF50692	ADC-like
dmsA	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
dmsB	SSF54862	4Fe-4S ferredoxins
dmsD	SSF89155	TorD-like
dnaA	SSF48295	TrpR-like
dnaA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
dnaB	SSF48024	N-terminal domain of DnaB helicase
dnaB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
dnaC	SSF52540	P-loop containing nucleoside triphosphate hydrolases
dnaE	SSF89550	PHP domain-like
dnaG	SSF117023	DNA primase DnaG, C-terminal domain
dnaG	SSF56731	DNA primase core
dnaG	SSF57783	Zinc beta-ribbon
dnaJ	SSF46565	Chaperone J-domain
dnaJ	SSF49493	HSP40/DnaJ peptide-binding domain
dnaJ	SSF57938	DnaJ/Hsp40 cysteine-rich domain
dnaK	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
dnaK	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
dnaK	SSF53067	Actin-like ATPase domain
dnaN	SSF55979	DNA clamp
dnaQ	SSF53098	Ribonuclease H-like
dnaX	SSF48019	post-AAA+ oligomerization domain-like
dnaX	SSF52540	P-loop containing nucleoside triphosphate hydrolases
dos	SSF141868	EAL domain-like
dos	SSF55073	Nucleotide cyclase
dos	SSF55785	PYP-like sensor domain (PAS domain)
dppA	SSF53850	Periplasmic binding protein-like II
dppB	SSF161098	MetI-like
dppC	SSF161098	MetI-like
dppD	SSF52540	P-loop containing nucleoside triphosphate hydrolases
dppF	SSF52540	P-loop containing nucleoside triphosphate hydrolases
dps	SSF47240	Ferritin-like
dsbA	SSF52833	Thioredoxin-like
dsbB	SSF158442	DsbB-like
dsbC	SSF52833	Thioredoxin-like
dsbC	SSF54423	DsbC/DsbG N-terminal domain-like
dsbG	SSF52833	Thioredoxin-like
dsbG	SSF54423	DsbC/DsbG N-terminal domain-like
dsdA	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
dsdC	SSF46785	"Winged helix" DNA-binding domain
dsdC	SSF53850	Periplasmic binding protein-like II
dtd	SSF69500	DTD-like
dusB	SSF51395	FMN-linked oxidoreductases
dusC	SSF51395	FMN-linked oxidoreductases
dut	SSF51283	dUTPase-like
dxr	SSF51735	NAD(P)-binding Rossmann-fold domains
dxr	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
dxr	SSF69055	1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
dxs	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
dxs	SSF52922	TK C-terminal domain-like
eamA	SSF103481	Multidrug resistance efflux transporter EmrE
ebgA	SSF49303	beta-Galactosidase/glucuronidase domain
ebgA	SSF49785	Galactose-binding domain-like
ebgA	SSF51445	(Trans)glycosidases
ebgA	SSF74650	Galactose mutarotase-like
ebgC	SSF51197	Clavaminate synthase-like
ebgR	SSF47413	lambda repressor-like DNA-binding domains
ebgR	SSF53822	Periplasmic binding protein-like I
eco	SSF49772	Ecotin, trypsin inhibitor
ecpD	SSF49354	PapD-like
ecpD	SSF49584	Periplasmic chaperone C-domain
eda	SSF51569	Aldolase
edd	SSF143975	IlvD/EDD N-terminal domain-like
edd	SSF52016	LeuD/IlvD-like
efp	SSF50104	Translation proteins SH3-like domain
efp	SSF50249	Nucleic acid-binding proteins
ego	SSF52540	P-loop containing nucleoside triphosphate hydrolases
elaA	SSF55729	Acyl-CoA N-acyltransferases (Nat)
elaC	SSF56281	Metallo-hydrolase/oxidoreductase
elaD	SSF54001	Cysteine proteinases
elbB	SSF52317	Class I glutamine amidotransferase-like
emrA	SSF111369	HlyD-like secretion proteins
emrB	SSF103473	MFS general substrate transporter
emrD	SSF103473	MFS general substrate transporter
emrE	SSF103481	Multidrug resistance efflux transporter EmrE
emrK	SSF111369	HlyD-like secretion proteins
emrY	SSF103473	MFS general substrate transporter
emtA	SSF53955	Lysozyme-like
endA	SSF54060	His-Me finger endonucleases
eno	SSF51604	Enolase C-terminal domain-like
eno	SSF54826	Enolase N-terminal domain-like
entA	SSF51735	NAD(P)-binding Rossmann-fold domains
entB	SSF47336	ACP-like
entB	SSF52499	Isochorismatase-like hydrolases
entC	SSF56322	ADC synthase
entD	SSF56214	4'-phosphopantetheinyl transferase
entE	SSF56801	Acetyl-CoA synthetase-like
entF	SSF47336	ACP-like
entF	SSF52777	CoA-dependent acyltransferases
entF	SSF53474	alpha/beta-Hydrolases
entF	SSF56801	Acetyl-CoA synthetase-like
envC	SSF51261	Duplicated hybrid motif
envR	SSF46689	Homeodomain-like
envR	SSF48498	Tetracyclin repressor-like, C-terminal domain
envY	SSF46689	Homeodomain-like
envZ	SSF47384	Homodimeric domain of signal transducing histidine kinase
envZ	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
epd	SSF51735	NAD(P)-binding Rossmann-fold domains
epd	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
eptA	SSF53649	Alkaline phosphatase-like
eptB	SSF53649	Alkaline phosphatase-like
era	SSF52540	P-loop containing nucleoside triphosphate hydrolases
era	SSF54814	Prokaryotic type KH domain (KH-domain type II)
erfK	SSF141523	L,D-transpeptidase catalytic domain-like
etp	SSF52788	Phosphotyrosine protein phosphatases I
eutA	SSF53067	Actin-like ATPase domain
eutE	SSF53720	ALDH-like
eutG	SSF56796	Dehydroquinate synthase-like
eutI	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
eutJ	SSF53067	Actin-like ATPase domain
eutL	SSF143414	CcmK-like
eutP	SSF52540	P-loop containing nucleoside triphosphate hydrolases
eutQ	SSF51182	RmlC-like cupins
eutT	SSF89028	Cobalamin adenosyltransferase-like
evgA	SSF46894	C-terminal effector domain of the bipartite response regulators
evgA	SSF52172	CheY-like
evgS	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
evgS	SSF47384	Homodimeric domain of signal transducing histidine kinase
evgS	SSF52172	CheY-like
evgS	SSF53850	Periplasmic binding protein-like II
evgS	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
exo	SSF47807	5' to 3' exonuclease, C-terminal subdomain
exo	SSF88723	PIN domain-like
exoX	SSF53098	Ribonuclease H-like
exuR	SSF46785	"Winged helix" DNA-binding domain
exuR	SSF48008	GntR ligand-binding domain-like
exuT	SSF103473	MFS general substrate transporter
fabA	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
fabB	SSF53901	Thiolase-like
fabD	SSF52151	FabD/lysophospholipase-like
fabD	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
fabF	SSF53901	Thiolase-like
fabG	SSF51735	NAD(P)-binding Rossmann-fold domains
fabH	SSF53901	Thiolase-like
fabI	SSF51735	NAD(P)-binding Rossmann-fold domains
fabR	SSF46689	Homeodomain-like
fabZ	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
fadA	SSF53901	Thiolase-like
fadB	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
fadB	SSF51735	NAD(P)-binding Rossmann-fold domains
fadB	SSF52096	ClpP/crotonase
fadD	SSF56801	Acetyl-CoA synthetase-like
fadE	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
fadE	SSF56645	Acyl-CoA dehydrogenase NM domain-like
fadH	SSF51395	FMN-linked oxidoreductases
fadH	SSF51905	FAD/NAD(P)-binding domain
fadH	SSF51971	Nucleotide-binding domain
fadL	SSF56935	Porins
fadR	SSF46785	"Winged helix" DNA-binding domain
fadR	SSF48008	GntR ligand-binding domain-like
fbaA	SSF51569	Aldolase
fbaB	SSF51569	Aldolase
fbp	SSF56655	Carbohydrate phosphatase
fcl	SSF51735	NAD(P)-binding Rossmann-fold domains
fdhD	SSF53927	Cytidine deaminase-like
fdhE	SSF144020	FdhE-like
fdhF	SSF50692	ADC-like
fdhF	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
fdnG	SSF50692	ADC-like
fdnG	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
fdnH	SSF54862	4Fe-4S ferredoxins
fdnI	SSF81342	Transmembrane di-heme cytochromes
fdoG	SSF50692	ADC-like
fdoG	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
fdoH	SSF54862	4Fe-4S ferredoxins
fdoI	SSF81342	Transmembrane di-heme cytochromes
fdrA	SSF52210	Succinyl-CoA synthetase domains
fdx	SSF54292	2Fe-2S ferredoxin-like
feaB	SSF53720	ALDH-like
feaR	SSF46689	Homeodomain-like
feaR	SSF51215	Regulatory protein AraC
fecA	SSF56935	Porins
fecB	SSF53807	"Helical backbone" metal receptor
fecC	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
fecD	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
fecE	SSF52540	P-loop containing nucleoside triphosphate hydrolases
fecI	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
fecI	SSF88946	Sigma2 domain of RNA polymerase sigma factors
feoA	SSF50037	C-terminal domain of transcriptional repressors
feoB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
fepA	SSF56935	Porins
fepB	SSF53807	"Helical backbone" metal receptor
fepC	SSF52540	P-loop containing nucleoside triphosphate hydrolases
fepD	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
fepE	SSF160355	Bacterial polysaccharide co-polymerase-like
fepG	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
fes	SSF53474	alpha/beta-Hydrolases
fes	SSF81296	E set domains
ffh	SSF47446	Signal peptide-binding domain
ffh	SSF52540	P-loop containing nucleoside triphosphate hydrolases
fhlA	SSF46689	Homeodomain-like
fhlA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
fhlA	SSF55781	GAF domain-like
fhuA	SSF56935	Porins
fhuB	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
fhuC	SSF52540	P-loop containing nucleoside triphosphate hydrolases
fhuD	SSF53807	"Helical backbone" metal receptor
fhuE	SSF56935	Porins
fic	SSF140931	Fic-like
fieF	SSF160240	Cation efflux protein cytoplasmic domain-like
fieF	SSF161111	Cation efflux protein transmembrane domain-like
fimA	SSF49401	Bacterial adhesins
fimB	SSF56349	DNA breaking-rejoining enzymes
fimC	SSF49354	PapD-like
fimC	SSF49584	Periplasmic chaperone C-domain
fimD	SSF141729	FimD N-terminal domain-like
fimE	SSF56349	DNA breaking-rejoining enzymes
fimF	SSF49401	Bacterial adhesins
fimG	SSF49401	Bacterial adhesins
fimH	SSF49401	Bacterial adhesins
fimI	SSF49401	Bacterial adhesins
fimZ	SSF46894	C-terminal effector domain of the bipartite response regulators
fimZ	SSF52172	CheY-like
fis	SSF46689	Homeodomain-like
fiu	SSF56935	Porins
fixA	SSF52402	Adenine nucleotide alpha hydrolases-like
fixB	SSF52402	Adenine nucleotide alpha hydrolases-like
fixB	SSF52467	DHS-like NAD/FAD-binding domain
fixC	SSF51905	FAD/NAD(P)-binding domain
fixC	SSF54373	FAD-linked reductases, C-terminal domain
fixX	SSF54862	4Fe-4S ferredoxins
fklB	SSF54534	FKBP-like
fkpA	SSF54534	FKBP-like
fkpB	SSF54534	FKBP-like
fldA	SSF52218	Flavoproteins
fldB	SSF52218	Flavoproteins
flgE	SSF117143	Flagellar hook protein flgE
flgF	SSF117143	Flagellar hook protein flgE
flgG	SSF117143	Flagellar hook protein flgE
flgK	SSF64518	Phase 1 flagellin
flgL	SSF64518	Phase 1 flagellin
flgM	SSF101498	Anti-sigma factor FlgM
flgN	SSF140566	FlgN-like
flhB	SSF160544	EscU C-terminal domain-like
flhC	SSF160930	FlhC-like
flhD	SSF63592	Flagellar transcriptional activator FlhD
fliA	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
fliA	SSF88946	Sigma2 domain of RNA polymerase sigma factors
fliC	SSF64518	Phase 1 flagellin
fliG	SSF48029	FliG
fliI	SSF52540	P-loop containing nucleoside triphosphate hydrolases
fliM	SSF101801	Surface presentation of antigens (SPOA)
fliM	SSF103039	CheC-like
fliN	SSF101801	Surface presentation of antigens (SPOA)
fliS	SSF101116	Flagellar export chaperone FliS
fliY	SSF53850	Periplasmic binding protein-like II
flu	SSF103515	Autotransporter
flu	SSF51126	Pectin lyase-like
fmt	SSF50486	FMT C-terminal domain-like
fmt	SSF53328	Formyltransferase
fnr	SSF46785	"Winged helix" DNA-binding domain
fnr	SSF51206	cAMP-binding domain-like
folA	SSF53597	Dihydrofolate reductase-like
folB	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
folC	SSF53244	MurD-like peptide ligases, peptide-binding domain
folC	SSF53623	MurD-like peptide ligases, catalytic domain
folD	SSF51735	NAD(P)-binding Rossmann-fold domains
folD	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
folE	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
folK	SSF55083	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
folM	SSF51735	NAD(P)-binding Rossmann-fold domains
folP	SSF51717	Dihydropteroate synthetase-like
folX	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
fpr	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
fpr	SSF63380	Riboflavin synthase domain-like
frc	SSF89796	CoA-transferase family III (CaiB/BaiF)
frdA	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
frdA	SSF51905	FAD/NAD(P)-binding domain
frdA	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
frdB	SSF46548	alpha-helical ferredoxin
frdB	SSF54292	2Fe-2S ferredoxin-like
frdC	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
frdD	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
fre	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
fre	SSF63380	Riboflavin synthase domain-like
frlB	SSF53697	SIS domain
frlC	SSF51658	Xylose isomerase-like
frlD	SSF53613	Ribokinase-like
frlR	SSF46785	"Winged helix" DNA-binding domain
frlR	SSF64288	Chorismate lyase-like
frmA	SSF50129	GroES-like
frmA	SSF51735	NAD(P)-binding Rossmann-fold domains
frmB	SSF53474	alpha/beta-Hydrolases
frr	SSF55194	Ribosome recycling factor, RRF
frsA	SSF53474	alpha/beta-Hydrolases
fruA	SSF52794	PTS system IIB component-like
fruB	SSF55594	HPr-like
fruB	SSF55804	Phoshotransferase/anion transport protein
fruK	SSF53613	Ribokinase-like
fruR	SSF47413	lambda repressor-like DNA-binding domains
fruR	SSF53822	Periplasmic binding protein-like I
frvA	SSF55804	Phoshotransferase/anion transport protein
frvB	SSF52794	PTS system IIB component-like
frvR	SSF46785	"Winged helix" DNA-binding domain
frvR	SSF55804	Phoshotransferase/anion transport protein
frvX	SSF101821	Aminopeptidase/glucanase lid domain
frvX	SSF53187	Zn-dependent exopeptidases
frwB	SSF52794	PTS system IIB component-like
frwD	SSF52794	PTS system IIB component-like
fsaA	SSF51569	Aldolase
fsaB	SSF51569	Aldolase
fsr	SSF103473	MFS general substrate transporter
ftn	SSF47240	Ferritin-like
ftsA	SSF53067	Actin-like ATPase domain
ftsE	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ftsH	SSF140990	FtsH protease domain-like
ftsH	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ftsI	SSF56519	Penicillin binding protein dimerisation domain
ftsI	SSF56601	beta-lactamase/transpeptidase-like
ftsK	SSF46785	"Winged helix" DNA-binding domain
ftsK	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ftsN	SSF110997	Sporulation related repeat
ftsY	SSF47364	Domain of the SRP/SRP receptor G-proteins
ftsY	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ftsZ	SSF52490	Tubulin nucleotide-binding domain-like
ftsZ	SSF55307	Tubulin C-terminal domain-like
fucA	SSF53639	AraD/HMP-PK domain-like
fucI	SSF50443	FucI/AraA C-terminal domain-like
fucI	SSF53743	FucI/AraA N-terminal and middle domains
fucK	SSF53067	Actin-like ATPase domain
fucO	SSF56796	Dehydroquinate synthase-like
fucP	SSF103473	MFS general substrate transporter
fucR	SSF100950	NagB/RpiA/CoA transferase-like
fucR	SSF46785	"Winged helix" DNA-binding domain
fucU	SSF102546	RbsD-like
fumA	SSF117457	FumA C-terminal domain-like
fumB	SSF117457	FumA C-terminal domain-like
fumC	SSF48557	L-aspartase-like
fur	SSF46785	"Winged helix" DNA-binding domain
fusA	SSF50447	Translation proteins
fusA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
fusA	SSF54211	Ribosomal protein S5 domain 2-like
fusA	SSF54980	EF-G C-terminal domain-like
gabD	SSF53720	ALDH-like
gabT	SSF53383	PLP-dependent transferases
gadA	SSF53383	PLP-dependent transferases
gadB	SSF53383	PLP-dependent transferases
gadE	SSF46894	C-terminal effector domain of the bipartite response regulators
gadW	SSF46689	Homeodomain-like
gadX	SSF46689	Homeodomain-like
galE	SSF51735	NAD(P)-binding Rossmann-fold domains
galF	SSF53448	Nucleotide-diphospho-sugar transferases
galK	SSF54211	Ribosomal protein S5 domain 2-like
galK	SSF55060	GHMP Kinase, C-terminal domain
galM	SSF74650	Galactose mutarotase-like
galP	SSF103473	MFS general substrate transporter
galR	SSF47413	lambda repressor-like DNA-binding domains
galR	SSF53822	Periplasmic binding protein-like I
galS	SSF47413	lambda repressor-like DNA-binding domains
galS	SSF53822	Periplasmic binding protein-like I
galT	SSF54197	HIT-like
galU	SSF53448	Nucleotide-diphospho-sugar transferases
gapA	SSF51735	NAD(P)-binding Rossmann-fold domains
gapA	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
garK	SSF110738	Glycerate kinase I
garL	SSF51621	Phosphoenolpyruvate/pyruvate domain
garP	SSF103473	MFS general substrate transporter
garR	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
garR	SSF51735	NAD(P)-binding Rossmann-fold domains
gatA	SSF55804	Phoshotransferase/anion transport protein
gatB	SSF52794	PTS system IIB component-like
gatD	SSF50129	GroES-like
gatD	SSF51735	NAD(P)-binding Rossmann-fold domains
gatY	SSF51569	Aldolase
gatZ	SSF51569	Aldolase
gcd	SSF50998	Quinoprotein alcohol dehydrogenase-like
gcl	SSF52467	DHS-like NAD/FAD-binding domain
gcl	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
gcvA	SSF46785	"Winged helix" DNA-binding domain
gcvA	SSF53850	Periplasmic binding protein-like II
gcvH	SSF51230	Single hybrid motif
gcvP	SSF53383	PLP-dependent transferases
gcvR	SSF55021	ACT-like
gcvT	SSF101790	Aminomethyltransferase beta-barrel domain
gcvT	SSF103025	Folate-binding domain
gdhA	SSF51735	NAD(P)-binding Rossmann-fold domains
gdhA	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
ggt	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
gidA	SSF51905	FAD/NAD(P)-binding domain
gidB	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
glcB	SSF51645	Malate synthase G
glcC	SSF46785	"Winged helix" DNA-binding domain
glcC	SSF48008	GntR ligand-binding domain-like
glcD	SSF55103	FAD-linked oxidases, C-terminal domain
glcD	SSF56176	FAD-binding/transporter-associated domain-like
glcE	SSF55103	FAD-linked oxidases, C-terminal domain
glcE	SSF56176	FAD-binding/transporter-associated domain-like
glcF	SSF54862	4Fe-4S ferredoxins
glcG	SSF143744	GlcG-like
gldA	SSF56796	Dehydroquinate synthase-like
glf	SSF51971	Nucleotide-binding domain
glf	SSF54373	FAD-linked reductases, C-terminal domain
glgA	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
glgB	SSF51011	Glycosyl hydrolase domain
glgB	SSF51445	(Trans)glycosidases
glgB	SSF81296	E set domains
glgC	SSF51161	Trimeric LpxA-like enzymes
glgC	SSF53448	Nucleotide-diphospho-sugar transferases
glgP	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
glgS	SSF109747	Glycogen synthesis protein GlgS
glgX	SSF51445	(Trans)glycosidases
glgX	SSF81296	E set domains
glk	SSF53067	Actin-like ATPase domain
glmM	SSF53738	Phosphoglucomutase, first 3 domains
glmM	SSF55957	Phosphoglucomutase, C-terminal domain
glmS	SSF53697	SIS domain
glmS	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
glmU	SSF51161	Trimeric LpxA-like enzymes
glmU	SSF53448	Nucleotide-diphospho-sugar transferases
glnA	SSF54368	Glutamine synthetase, N-terminal domain
glnA	SSF55931	Glutamine synthetase/guanido kinase
glnB	SSF54913	GlnB-like
glnD	SSF109604	HD-domain/PDEase-like
glnD	SSF55021	ACT-like
glnD	SSF81301	Nucleotidyltransferase
glnD	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
glnE	SSF81301	Nucleotidyltransferase
glnE	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
glnG	SSF46689	Homeodomain-like
glnG	SSF52172	CheY-like
glnG	SSF52540	P-loop containing nucleoside triphosphate hydrolases
glnH	SSF53850	Periplasmic binding protein-like II
glnK	SSF54913	GlnB-like
glnL	SSF47384	Homodimeric domain of signal transducing histidine kinase
glnL	SSF55785	PYP-like sensor domain (PAS domain)
glnL	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
glnP	SSF161098	MetI-like
glnQ	SSF52540	P-loop containing nucleoside triphosphate hydrolases
glnS	SSF50715	Ribosomal protein L25-like
glnS	SSF52374	Nucleotidylyl transferase
gloA	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
gloB	SSF56281	Metallo-hydrolase/oxidoreductase
glpA	SSF51905	FAD/NAD(P)-binding domain
glpB	SSF51905	FAD/NAD(P)-binding domain
glpC	SSF46548	alpha-helical ferredoxin
glpD	SSF51905	FAD/NAD(P)-binding domain
glpD	SSF54373	FAD-linked reductases, C-terminal domain
glpE	SSF52821	Rhodanese/Cell cycle control phosphatase
glpF	SSF81338	Aquaporin-like
glpG	SSF144091	Rhomboid-like
glpK	SSF53067	Actin-like ATPase domain
glpQ	SSF51695	PLC-like phosphodiesterases
glpR	SSF100950	NagB/RpiA/CoA transferase-like
glpR	SSF46785	"Winged helix" DNA-binding domain
glpT	SSF103473	MFS general substrate transporter
glpX	SSF56655	Carbohydrate phosphatase
gltA	SSF48256	Citrate synthase
gltB	SSF51395	FMN-linked oxidoreductases
gltB	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
gltB	SSF69336	Alpha subunit of glutamate synthase, C-terminal domain
gltD	SSF46548	alpha-helical ferredoxin
gltD	SSF51971	Nucleotide-binding domain
gltI	SSF53850	Periplasmic binding protein-like II
gltJ	SSF161098	MetI-like
gltK	SSF161098	MetI-like
gltL	SSF52540	P-loop containing nucleoside triphosphate hydrolases
gltP	SSF118215	Proton glutamate symport protein
gltX	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
gltX	SSF52374	Nucleotidylyl transferase
glvB	SSF55604	Glucose permease domain IIB
glxK	SSF110738	Glycerate kinase I
glxR	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
glxR	SSF51735	NAD(P)-binding Rossmann-fold domains
glyA	SSF53383	PLP-dependent transferases
glyQ	SSF55681	Class II aaRS and biotin synthetases
glyS	SSF109604	HD-domain/PDEase-like
gmd	SSF51735	NAD(P)-binding Rossmann-fold domains
gmhB	SSF56784	HAD-like
gmk	SSF52540	P-loop containing nucleoside triphosphate hydrolases
gmr	SSF141868	EAL domain-like
gmr	SSF55073	Nucleotide cyclase
gmr	SSF55785	PYP-like sensor domain (PAS domain)
gnd	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
gnd	SSF51735	NAD(P)-binding Rossmann-fold domains
gntK	SSF52540	P-loop containing nucleoside triphosphate hydrolases
gntR	SSF47413	lambda repressor-like DNA-binding domains
gntR	SSF53822	Periplasmic binding protein-like I
gntX	SSF53271	PRTase-like
gntY	SSF117916	Fe-S cluster assembly (FSCA) domain-like
gntY	SSF89360	HesB-like domain
gor	SSF51905	FAD/NAD(P)-binding domain
gor	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
gph	SSF56784	HAD-like
gpmA	SSF53254	Phosphoglycerate mutase-like
gpmI	SSF53649	Alkaline phosphatase-like
gpmI	SSF64158	2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
gpp	SSF109604	HD-domain/PDEase-like
gpp	SSF53067	Actin-like ATPase domain
gpsA	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
gpsA	SSF51735	NAD(P)-binding Rossmann-fold domains
gpt	SSF53271	PRTase-like
greA	SSF46557	GreA transcript cleavage protein, N-terminal domain
greA	SSF54534	FKBP-like
greB	SSF46557	GreA transcript cleavage protein, N-terminal domain
greB	SSF54534	FKBP-like
groL	SSF48592	GroEL equatorial domain-like
groL	SSF52029	GroEL apical domain-like
groL	SSF54849	GroEL-intermediate domain like
groS	SSF50129	GroES-like
grpE	SSF51064	Head domain of nucleotide exchange factor GrpE
grpE	SSF58014	Coiled-coil domain of nucleotide exchange factor GrpE
grxA	SSF52833	Thioredoxin-like
grxB	SSF47616	GST C-terminal domain-like
grxB	SSF52833	Thioredoxin-like
grxC	SSF52833	Thioredoxin-like
gshA	SSF55931	Glutamine synthetase/guanido kinase
gshB	SSF52440	PreATP-grasp domain
gshB	SSF56059	Glutathione synthetase ATP-binding domain-like
gsk	SSF53613	Ribokinase-like
gspA	SSF47090	PGBD-like
gspA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
gspC	SSF50156	PDZ domain-like
gspE	SSF52540	P-loop containing nucleoside triphosphate hydrolases
gspG	SSF54523	Pili subunits
gspH	SSF54523	Pili subunits
gspI	SSF54523	Pili subunits
gspJ	SSF54523	Pili subunits
gspK	SSF158544	GspK insert domain-like
gspK	SSF54523	Pili subunits
gspL	SSF53067	Actin-like ATPase domain
gspM	SSF103054	General secretion pathway protein M, EpsM
gss	SSF52440	PreATP-grasp domain
gss	SSF54001	Cysteine proteinases
gss	SSF56059	Glutathione synthetase ATP-binding domain-like
gst	SSF47616	GST C-terminal domain-like
gst	SSF52833	Thioredoxin-like
guaA	SSF52317	Class I glutamine amidotransferase-like
guaA	SSF52402	Adenine nucleotide alpha hydrolases-like
guaA	SSF54810	GMP synthetase C-terminal dimerisation domain
guaB	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
guaB	SSF54631	CBS-domain pair
guaC	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
guaD	SSF51338	Composite domain of metallo-dependent hydrolases
guaD	SSF51556	Metallo-dependent hydrolases
gudD	SSF51604	Enolase C-terminal domain-like
gudD	SSF54826	Enolase N-terminal domain-like
gudP	SSF103473	MFS general substrate transporter
gudX	SSF51604	Enolase C-terminal domain-like
gudX	SSF54826	Enolase N-terminal domain-like
gutQ	SSF53697	SIS domain
gutQ	SSF54631	CBS-domain pair
gyrA	SSF101904	GyrA/ParC C-terminal domain-like
gyrA	SSF56719	Type II DNA topoisomerase
gyrB	SSF54211	Ribosomal protein S5 domain 2-like
gyrB	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
gyrB	SSF56719	Type II DNA topoisomerase
hcaB	SSF51735	NAD(P)-binding Rossmann-fold domains
hcaC	SSF50022	ISP domain
hcaD	SSF51905	FAD/NAD(P)-binding domain
hcaD	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
hcaE	SSF50022	ISP domain
hcaE	SSF55961	Bet v1-like
hcaF	SSF54427	NTF2-like
hcaR	SSF46785	"Winged helix" DNA-binding domain
hcaR	SSF53850	Periplasmic binding protein-like II
hcaT	SSF103473	MFS general substrate transporter
hchA	SSF52317	Class I glutamine amidotransferase-like
hcp	SSF56821	Prismane protein-like
hcr	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
hcr	SSF54292	2Fe-2S ferredoxin-like
hcr	SSF63380	Riboflavin synthase domain-like
hda	SSF52540	P-loop containing nucleoside triphosphate hydrolases
hdeA	SSF47752	Protein HNS-dependent expression A; HdeA
hdfR	SSF46785	"Winged helix" DNA-binding domain
hdfR	SSF53850	Periplasmic binding protein-like II
hdhA	SSF51735	NAD(P)-binding Rossmann-fold domains
helD	SSF52540	P-loop containing nucleoside triphosphate hydrolases
hemA	SSF51735	NAD(P)-binding Rossmann-fold domains
hemA	SSF69075	Glutamyl tRNA-reductase dimerization domain
hemA	SSF69742	Glutamyl tRNA-reductase catalytic, N-terminal domain
hemB	SSF51569	Aldolase
hemC	SSF53850	Periplasmic binding protein-like II
hemC	SSF54782	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
hemD	SSF69618	HemD-like
hemE	SSF51726	UROD/MetE-like
hemF	SSF102886	Coproporphyrinogen III oxidase
hemG	SSF52218	Flavoproteins
hemH	SSF53800	Chelatase
hemL	SSF53383	PLP-dependent transferases
hemN	SSF102114	Radical SAM enzymes
hemY	SSF48452	TPR-like
hepA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
hflC	SSF117892	Band 7/SPFH domain
hflD	SSF101322	YcfC-like
hflK	SSF117892	Band 7/SPFH domain
hflX	SSF52540	P-loop containing nucleoside triphosphate hydrolases
hflX	SSF54980	EF-G C-terminal domain-like
hfq	SSF50182	Sm-like ribonucleoproteins
hha	SSF68989	Hemolysin expression modulating protein HHA
hinT	SSF54197	HIT-like
hipB	SSF47413	lambda repressor-like DNA-binding domains
hisA	SSF51366	Ribulose-phoshate binding barrel
hisB	SSF54211	Ribosomal protein S5 domain 2-like
hisB	SSF56784	HAD-like
hisC	SSF53383	PLP-dependent transferases
hisD	SSF53720	ALDH-like
hisF	SSF51366	Ribulose-phoshate binding barrel
hisG	SSF53850	Periplasmic binding protein-like II
hisG	SSF54913	GlnB-like
hisH	SSF52317	Class I glutamine amidotransferase-like
hisI	SSF101386	all-alpha NTP pyrophosphatases
hisI	SSF141734	HisI-like
hisJ	SSF53850	Periplasmic binding protein-like II
hisM	SSF161098	MetI-like
hisP	SSF52540	P-loop containing nucleoside triphosphate hydrolases
hisQ	SSF161098	MetI-like
hisS	SSF52954	Class II aaRS ABD-related
hisS	SSF55681	Class II aaRS and biotin synthetases
hlpA	SSF111384	OmpH-like
hlyE	SSF58100	Bacterial hemolysins
hmp	SSF46458	Globin-like
hmp	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
hmp	SSF63380	Riboflavin synthase domain-like
hns	SSF81273	H-NS histone-like proteins
hofB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
holA	SSF48019	post-AAA+ oligomerization domain-like
holA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
holB	SSF48019	post-AAA+ oligomerization domain-like
holB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
holC	SSF102400	DNA polymerase III chi subunit
holD	SSF102220	DNA polymerase III psi subunit
holE	SSF46575	DNA polymerase III theta subunit-like
hpt	SSF53271	PRTase-like
hrpA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
hrpB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
hscA	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
hscA	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
hscA	SSF53067	Actin-like ATPase domain
hscB	SSF46565	Chaperone J-domain
hscB	SSF47144	HSC20 (HSCB), C-terminal oligomerisation domain
hscC	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
hscC	SSF53067	Actin-like ATPase domain
hsdM	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
hsdR	SSF52540	P-loop containing nucleoside triphosphate hydrolases
hsdS	SSF116734	DNA methylase specificity domain
hslO	SSF118352	HSP33 redox switch-like
hslO	SSF64397	Hsp33 domain
hslR	SSF55174	Alpha-L RNA-binding motif
hslU	SSF52540	P-loop containing nucleoside triphosphate hydrolases
hslV	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
hsrA	SSF103473	MFS general substrate transporter
htpG	SSF110942	HSP90 C-terminal domain
htpG	SSF54211	Ribosomal protein S5 domain 2-like
htpG	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
htrE	SSF141729	FimD N-terminal domain-like
hupA	SSF47729	IHF-like DNA-binding proteins
hupB	SSF47729	IHF-like DNA-binding proteins
hyaA	SSF56770	HydA/Nqo6-like
hyaB	SSF56762	HydB/Nqo4-like
hyaC	SSF81342	Transmembrane di-heme cytochromes
hyaD	SSF53163	HybD-like
hyaE	SSF52833	Thioredoxin-like
hybA	SSF54862	4Fe-4S ferredoxins
hybC	SSF56762	HydB/Nqo4-like
hybD	SSF53163	HybD-like
hybG	SSF159127	HupF/HypC-like
hybO	SSF56770	HydA/Nqo6-like
hycB	SSF54862	4Fe-4S ferredoxins
hycE	SSF143243	Nqo5-like
hycE	SSF56762	HydB/Nqo4-like
hycF	SSF54862	4Fe-4S ferredoxins
hycG	SSF56770	HydA/Nqo6-like
hycI	SSF53163	HybD-like
hydN	SSF54862	4Fe-4S ferredoxins
hyfA	SSF54862	4Fe-4S ferredoxins
hyfG	SSF143243	Nqo5-like
hyfG	SSF56762	HydB/Nqo4-like
hyfH	SSF54862	4Fe-4S ferredoxins
hyfI	SSF56770	HydA/Nqo6-like
hyfR	SSF46689	Homeodomain-like
hyfR	SSF52540	P-loop containing nucleoside triphosphate hydrolases
hyfR	SSF55781	GAF domain-like
hyi	SSF51658	Xylose isomerase-like
hypB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
hypC	SSF159127	HupF/HypC-like
hypE	SSF55326	PurM N-terminal domain-like
hypE	SSF56042	PurM C-terminal domain-like
hypF	SSF54975	Acylphosphatase/BLUF domain-like
hypF	SSF55821	YrdC/RibB
hyuA	SSF51338	Composite domain of metallo-dependent hydrolases
hyuA	SSF51556	Metallo-dependent hydrolases
iaaA	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
iadA	SSF51338	Composite domain of metallo-dependent hydrolases
iadA	SSF51556	Metallo-dependent hydrolases
iap	SSF53187	Zn-dependent exopeptidases
ibpA	SSF49764	HSP20-like chaperones
ibpB	SSF49764	HSP20-like chaperones
icd	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
iclR	SSF46785	"Winged helix" DNA-binding domain
iclR	SSF55781	GAF domain-like
idi	SSF55811	Nudix
idnD	SSF50129	GroES-like
idnD	SSF51735	NAD(P)-binding Rossmann-fold domains
idnK	SSF52540	P-loop containing nucleoside triphosphate hydrolases
idnO	SSF51735	NAD(P)-binding Rossmann-fold domains
idnR	SSF47413	lambda repressor-like DNA-binding domains
idnR	SSF53822	Periplasmic binding protein-like I
ihfA	SSF47729	IHF-like DNA-binding proteins
ihfB	SSF47729	IHF-like DNA-binding proteins
ileS	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
ileS	SSF50677	ValRS/IleRS/LeuRS editing domain
ileS	SSF52374	Nucleotidylyl transferase
ilvA	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
ilvA	SSF55021	ACT-like
ilvB	SSF52467	DHS-like NAD/FAD-binding domain
ilvB	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
ilvC	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
ilvC	SSF51735	NAD(P)-binding Rossmann-fold domains
ilvD	SSF143975	IlvD/EDD N-terminal domain-like
ilvD	SSF52016	LeuD/IlvD-like
ilvE	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
ilvH	SSF55021	ACT-like
ilvI	SSF52467	DHS-like NAD/FAD-binding domain
ilvI	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
ilvM	SSF55021	ACT-like
ilvN	SSF55021	ACT-like
ilvY	SSF46785	"Winged helix" DNA-binding domain
ilvY	SSF53850	Periplasmic binding protein-like II
inaA	SSF56112	Protein kinase-like (PK-like)
infA	SSF50249	Nucleic acid-binding proteins
infB	SSF46955	Putative DNA-binding domain
infB	SSF50447	Translation proteins
infB	SSF52156	Initiation factor IF2/eIF5b, domain 3
infB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
infC	SSF54364	Translation initiation factor IF3, N-terminal domain
infC	SSF55200	Translation initiation factor IF3, C-terminal domain
insC	SSF46689	Homeodomain-like
insD	SSF53098	Ribonuclease H-like
insE	SSF46689	Homeodomain-like
insF	SSF53098	Ribonuclease H-like
insG	SSF53098	Ribonuclease H-like
insI	SSF53098	Ribonuclease H-like
insJ	SSF48295	TrpR-like
insK	SSF53098	Ribonuclease H-like
insL	SSF53098	Ribonuclease H-like
insN	SSF46689	Homeodomain-like
intA	SSF56349	DNA breaking-rejoining enzymes
intB	SSF56349	DNA breaking-rejoining enzymes
intD	SSF56349	DNA breaking-rejoining enzymes
intE	SSF54171	DNA-binding domain
intE	SSF56349	DNA breaking-rejoining enzymes
intF	SSF56349	DNA breaking-rejoining enzymes
intQ	SSF56349	DNA breaking-rejoining enzymes
intR	SSF56349	DNA breaking-rejoining enzymes
intS	SSF56349	DNA breaking-rejoining enzymes
iscA	SSF89360	HesB-like domain
iscR	SSF46785	"Winged helix" DNA-binding domain
iscS	SSF53383	PLP-dependent transferases
iscU	SSF82649	SufE/NifU
ispA	SSF48576	Terpenoid synthases
ispB	SSF48576	Terpenoid synthases
ispD	SSF53448	Nucleotide-diphospho-sugar transferases
ispE	SSF54211	Ribosomal protein S5 domain 2-like
ispE	SSF55060	GHMP Kinase, C-terminal domain
ispF	SSF69765	IpsF-like
ispG	SSF51717	Dihydropteroate synthetase-like
ispG	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
ispU	SSF64005	Undecaprenyl diphosphate synthase
ivy	SSF89872	Inhibitor of vertebrate lysozyme, Ivy
katE	SSF52317	Class I glutamine amidotransferase-like
katE	SSF56634	Heme-dependent catalase-like
katG	SSF48113	Heme-dependent peroxidases
kbaY	SSF51569	Aldolase
kbaZ	SSF51569	Aldolase
kbl	SSF53383	PLP-dependent transferases
kch	SSF51735	NAD(P)-binding Rossmann-fold domains
kch	SSF81324	Voltage-gated potassium channels
kdgK	SSF53613	Ribokinase-like
kdgR	SSF46785	"Winged helix" DNA-binding domain
kdgR	SSF55781	GAF domain-like
kdpB	SSF56784	HAD-like
kdpB	SSF81653	Calcium ATPase, transduction domain A
kdpB	SSF81660	Metal cation-transporting ATPase, ATP-binding domain N
kdpB	SSF81665	Calcium ATPase, transmembrane domain M
kdpD	SSF47384	Homodimeric domain of signal transducing histidine kinase
kdpD	SSF52402	Adenine nucleotide alpha hydrolases-like
kdpD	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
kdpE	SSF52172	CheY-like
kdsA	SSF51569	Aldolase
kdsB	SSF53448	Nucleotide-diphospho-sugar transferases
kdsC	SSF56784	HAD-like
kdsD	SSF53697	SIS domain
kdtA	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
kduD	SSF51735	NAD(P)-binding Rossmann-fold domains
kduI	SSF51182	RmlC-like cupins
kefA	SSF50182	Sm-like ribonucleoproteins
kefA	SSF81665	Calcium ATPase, transmembrane domain M
kefA	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
kefA	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
kefB	SSF51735	NAD(P)-binding Rossmann-fold domains
kefC	SSF51735	NAD(P)-binding Rossmann-fold domains
kefF	SSF52218	Flavoproteins
kefG	SSF52218	Flavoproteins
kgtP	SSF103473	MFS general substrate transporter
kptA	SSF56399	ADP-ribosylation
ksgA	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
lacA	SSF51161	Trimeric LpxA-like enzymes
lacI	SSF47413	lambda repressor-like DNA-binding domains
lacI	SSF53822	Periplasmic binding protein-like I
lacY	SSF103473	MFS general substrate transporter
lacZ	SSF49303	beta-Galactosidase/glucuronidase domain
lacZ	SSF49785	Galactose-binding domain-like
lacZ	SSF51445	(Trans)glycosidases
lacZ	SSF74650	Galactose mutarotase-like
lamB	SSF56935	Porins
ldcA	SSF141986	LD-carboxypeptidase A C-terminal domain-like
ldcA	SSF52317	Class I glutamine amidotransferase-like
ldcC	SSF53383	PLP-dependent transferases
ldcC	SSF55904	Ornithine decarboxylase C-terminal domain
ldhA	SSF51735	NAD(P)-binding Rossmann-fold domains
ldhA	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
lepA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
lepA	SSF54980	EF-G C-terminal domain-like
lepB	SSF51306	LexA/Signal peptidase
leuA	SSF110921	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
leuA	SSF51569	Aldolase
leuB	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
leuC	SSF53732	Aconitase iron-sulfur domain
leuD	SSF52016	LeuD/IlvD-like
leuO	SSF46785	"Winged helix" DNA-binding domain
leuO	SSF53850	Periplasmic binding protein-like II
leuS	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
leuS	SSF50677	ValRS/IleRS/LeuRS editing domain
leuS	SSF52374	Nucleotidylyl transferase
lexA	SSF46785	"Winged helix" DNA-binding domain
lexA	SSF51306	LexA/Signal peptidase
lhr	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ligA	SSF47781	RuvA domain 2-like
ligA	SSF50249	Nucleic acid-binding proteins
ligA	SSF52113	BRCT domain
ligA	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
ligB	SSF47781	RuvA domain 2-like
ligB	SSF50249	Nucleic acid-binding proteins
ligB	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
ligT	SSF55144	LigT-like
lipA	SSF102114	Radical SAM enzymes
lipB	SSF55681	Class II aaRS and biotin synthetases
livF	SSF52540	P-loop containing nucleoside triphosphate hydrolases
livG	SSF52540	P-loop containing nucleoside triphosphate hydrolases
livJ	SSF53822	Periplasmic binding protein-like I
livK	SSF53822	Periplasmic binding protein-like I
lldD	SSF51395	FMN-linked oxidoreductases
lldR	SSF46785	"Winged helix" DNA-binding domain
lldR	SSF48008	GntR ligand-binding domain-like
lnt	SSF56317	Carbon-nitrogen hydrolase
lolA	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
lolB	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
lolD	SSF52540	P-loop containing nucleoside triphosphate hydrolases
lon	SSF52540	P-loop containing nucleoside triphosphate hydrolases
lon	SSF54211	Ribosomal protein S5 domain 2-like
lon	SSF88697	PUA domain-like
lpcA	SSF53697	SIS domain
lpd	SSF51905	FAD/NAD(P)-binding domain
lpd	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
lplA	SSF55681	Class II aaRS and biotin synthetases
lplA	SSF82649	SufE/NifU
lpp	SSF58042	Outer membrane lipoprotein
lpxA	SSF51161	Trimeric LpxA-like enzymes
lpxB	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
lpxC	SSF54211	Ribosomal protein S5 domain 2-like
lpxD	SSF51161	Trimeric LpxA-like enzymes
lpxH	SSF56300	Metallo-dependent phosphatases
lpxK	SSF52540	P-loop containing nucleoside triphosphate hydrolases
lrhA	SSF46785	"Winged helix" DNA-binding domain
lrhA	SSF53850	Periplasmic binding protein-like II
lrp	SSF46785	"Winged helix" DNA-binding domain
lrp	SSF54909	Dimeric alpha+beta barrel
lsrB	SSF53822	Periplasmic binding protein-like I
lsrF	SSF51569	Aldolase
lsrG	SSF54909	Dimeric alpha+beta barrel
ltaE	SSF53383	PLP-dependent transferases
luxS	SSF63411	LuxS/MPP-like metallohydrolase
lysA	SSF50621	Alanine racemase C-terminal domain-like
lysA	SSF51419	PLP-binding barrel
lysC	SSF53633	Carbamate kinase-like
lysC	SSF55021	ACT-like
lysR	SSF46785	"Winged helix" DNA-binding domain
lysR	SSF53850	Periplasmic binding protein-like II
lysS	SSF50249	Nucleic acid-binding proteins
lysS	SSF55681	Class II aaRS and biotin synthetases
lysU	SSF50249	Nucleic acid-binding proteins
lysU	SSF55681	Class II aaRS and biotin synthetases
lyxK	SSF53067	Actin-like ATPase domain
maa	SSF51161	Trimeric LpxA-like enzymes
macA	SSF111369	HlyD-like secretion proteins
macB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
maeB	SSF51735	NAD(P)-binding Rossmann-fold domains
maeB	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
maeB	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
mak	SSF53067	Actin-like ATPase domain
malE	SSF53850	Periplasmic binding protein-like II
malF	SSF160964	MalF N-terminal region-like
malF	SSF161098	MetI-like
malG	SSF161098	MetI-like
malI	SSF47413	lambda repressor-like DNA-binding domains
malI	SSF53822	Periplasmic binding protein-like I
malK	SSF50331	MOP-like
malK	SSF52540	P-loop containing nucleoside triphosphate hydrolases
malP	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
malQ	SSF51445	(Trans)glycosidases
malS	SSF51445	(Trans)glycosidases
malT	SSF46894	C-terminal effector domain of the bipartite response regulators
malT	SSF48452	TPR-like
malT	SSF52540	P-loop containing nucleoside triphosphate hydrolases
malX	SSF55604	Glucose permease domain IIB
malY	SSF53383	PLP-dependent transferases
malZ	SSF51011	Glycosyl hydrolase domain
malZ	SSF51445	(Trans)glycosidases
malZ	SSF81296	E set domains
manA	SSF51182	RmlC-like cupins
manX	SSF52728	PTS IIb component
manX	SSF53062	PTS system fructose IIA component-like
maoC	SSF53720	ALDH-like
maoC	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
map	SSF55920	Creatinase/aminopeptidase
marA	SSF46689	Homeodomain-like
marR	SSF46785	"Winged helix" DNA-binding domain
mazG	SSF101386	all-alpha NTP pyrophosphatases
mcrB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
mdaB	SSF52218	Flavoproteins
mdh	SSF51735	NAD(P)-binding Rossmann-fold domains
mdh	SSF56327	LDH C-terminal domain-like
mdlA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
mdlA	SSF90123	ABC transporter transmembrane region
mdlB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
mdlB	SSF90123	ABC transporter transmembrane region
mdoB	SSF53649	Alkaline phosphatase-like
mdoD	SSF74650	Galactose mutarotase-like
mdoD	SSF81296	E set domains
mdoG	SSF74650	Galactose mutarotase-like
mdoG	SSF81296	E set domains
mdoH	SSF53448	Nucleotide-diphospho-sugar transferases
mdtA	SSF111369	HlyD-like secretion proteins
mdtB	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
mdtB	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
mdtB	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
mdtC	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
mdtC	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
mdtC	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
mdtD	SSF103473	MFS general substrate transporter
mdtE	SSF111369	HlyD-like secretion proteins
mdtF	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
mdtF	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
mdtF	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
mdtG	SSF103473	MFS general substrate transporter
mdtH	SSF103473	MFS general substrate transporter
mdtI	SSF103481	Multidrug resistance efflux transporter EmrE
mdtJ	SSF103481	Multidrug resistance efflux transporter EmrE
mdtL	SSF103473	MFS general substrate transporter
melA	SSF51735	NAD(P)-binding Rossmann-fold domains
melA	SSF56327	LDH C-terminal domain-like
melB	SSF103473	MFS general substrate transporter
melR	SSF46689	Homeodomain-like
melR	SSF47454	A DNA-binding domain in eukaryotic transcription factors
melR	SSF51182	RmlC-like cupins
menB	SSF52096	ClpP/crotonase
menC	SSF51604	Enolase C-terminal domain-like
menC	SSF54826	Enolase N-terminal domain-like
menD	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
menE	SSF56801	Acetyl-CoA synthetase-like
menF	SSF56322	ADC synthase
mepA	SSF55166	Hedgehog/DD-peptidase
metA	SSF52317	Class I glutamine amidotransferase-like
metB	SSF53383	PLP-dependent transferases
metC	SSF53383	PLP-dependent transferases
metE	SSF51726	UROD/MetE-like
metF	SSF51730	FAD-linked oxidoreductase
metG	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
metG	SSF50249	Nucleic acid-binding proteins
metG	SSF52374	Nucleotidylyl transferase
metG	SSF57770	Methionyl-tRNA synthetase (MetRS), Zn-domain
metH	SSF47644	Methionine synthase domain
metH	SSF51717	Dihydropteroate synthetase-like
metH	SSF52242	Cobalamin (vitamin B12)-binding domain
metH	SSF56507	Methionine synthase activation domain-like
metH	SSF82282	Homocysteine S-methyltransferase
metI	SSF161098	MetI-like
metJ	SSF47598	Ribbon-helix-helix
metK	SSF55973	S-adenosylmethionine synthetase
metL	SSF51735	NAD(P)-binding Rossmann-fold domains
metL	SSF53633	Carbamate kinase-like
metL	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
metN	SSF52540	P-loop containing nucleoside triphosphate hydrolases
metN	SSF55021	ACT-like
metQ	SSF53850	Periplasmic binding protein-like II
metR	SSF46785	"Winged helix" DNA-binding domain
metR	SSF53850	Periplasmic binding protein-like II
mfd	SSF141259	CarD-like
mfd	SSF143517	TRCF domain-like
mfd	SSF52540	P-loop containing nucleoside triphosphate hydrolases
mglA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
mglB	SSF53822	Periplasmic binding protein-like I
mgsA	SSF52335	Methylglyoxal synthase-like
mgtA	SSF56784	HAD-like
mgtA	SSF81653	Calcium ATPase, transduction domain A
mgtA	SSF81660	Metal cation-transporting ATPase, ATP-binding domain N
mgtA	SSF81665	Calcium ATPase, transmembrane domain M
mhpA	SSF51905	FAD/NAD(P)-binding domain
mhpB	SSF53213	LigB-like
mhpC	SSF53474	alpha/beta-Hydrolases
mhpD	SSF56529	FAH
mhpE	SSF51569	Aldolase
mhpE	SSF89000	post-HMGL domain-like
mhpF	SSF51735	NAD(P)-binding Rossmann-fold domains
mhpF	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
mhpR	SSF46785	"Winged helix" DNA-binding domain
mhpR	SSF55781	GAF domain-like
mhpT	SSF103473	MFS general substrate transporter
miaA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
miaB	SSF102114	Radical SAM enzymes
minC	SSF63848	Cell-division inhibitor MinC, C-terminal domain
minD	SSF52540	P-loop containing nucleoside triphosphate hydrolases
minE	SSF55229	Cell division protein MinE topological specificity domain
mioC	SSF52218	Flavoproteins
mlrA	SSF46955	Putative DNA-binding domain
mltA	SSF50685	Barwin-like endoglucanases
mltB	SSF53955	Lysozyme-like
mltC	SSF53955	Lysozyme-like
mltD	SSF53955	Lysozyme-like
mltD	SSF54106	LysM domain
mmuM	SSF82282	Homocysteine S-methyltransferase
mngA	SSF52794	PTS system IIB component-like
mngA	SSF55804	Phoshotransferase/anion transport protein
mngB	SSF74650	Galactose mutarotase-like
mngB	SSF88688	Families 57/38 glycoside transferase middle domain
mngB	SSF88713	Glycoside hydrolase/deacetylase
mngR	SSF46785	"Winged helix" DNA-binding domain
mngR	SSF64288	Chorismate lyase-like
mntR	SSF46785	"Winged helix" DNA-binding domain
mntR	SSF47979	Iron-dependent repressor protein, dimerization domain
moaA	SSF102114	Radical SAM enzymes
moaB	SSF53218	Molybdenum cofactor biosynthesis proteins
moaC	SSF55040	Molybdenum cofactor biosynthesis protein C, MoaC
moaD	SSF54285	MoaD/ThiS
moaE	SSF54690	Molybdopterin synthase subunit MoaE
mobA	SSF53448	Nucleotide-diphospho-sugar transferases
mobB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
modA	SSF53850	Periplasmic binding protein-like II
modB	SSF161098	MetI-like
modC	SSF50331	MOP-like
modC	SSF52540	P-loop containing nucleoside triphosphate hydrolases
modE	SSF46785	"Winged helix" DNA-binding domain
modE	SSF50331	MOP-like
modF	SSF52540	P-loop containing nucleoside triphosphate hydrolases
moeA	SSF53218	Molybdenum cofactor biosynthesis proteins
moeA	SSF63867	MoeA C-terminal domain-like
moeA	SSF63882	MoeA N-terminal region -like
moeB	SSF69572	Activating enzymes of the ubiquitin-like proteins
mog	SSF53218	Molybdenum cofactor biosynthesis proteins
motB	SSF103088	OmpA-like
mpaA	SSF53187	Zn-dependent exopeptidases
mpl	SSF51984	MurCD N-terminal domain
mpl	SSF53244	MurD-like peptide ligases, peptide-binding domain
mpl	SSF53623	MurD-like peptide ligases, catalytic domain
mppA	SSF53850	Periplasmic binding protein-like II
mprA	SSF46785	"Winged helix" DNA-binding domain
mqo	SSF51905	FAD/NAD(P)-binding domain
mraW	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
mraW	SSF81799	Putative methyltransferase TM0872, insert domain
mraZ	SSF89447	AbrB/MazE/MraZ-like
mrcA	SSF53955	Lysozyme-like
mrcA	SSF56601	beta-lactamase/transpeptidase-like
mrcB	SSF53955	Lysozyme-like
mrcB	SSF56601	beta-lactamase/transpeptidase-like
mrdA	SSF56519	Penicillin binding protein dimerisation domain
mrdA	SSF56601	beta-lactamase/transpeptidase-like
mreB	SSF53067	Actin-like ATPase domain
mrp	SSF117916	Fe-S cluster assembly (FSCA) domain-like
mrp	SSF52540	P-loop containing nucleoside triphosphate hydrolases
mrr	SSF52980	Restriction endonuclease-like
msbA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
msbA	SSF90123	ABC transporter transmembrane region
mscL	SSF81330	Gated mechanosensitive channel
mscS	SSF50182	Sm-like ribonucleoproteins
mscS	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
mscS	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
msrA	SSF55068	Peptide methionine sulfoxide reductase
mtgA	SSF53955	Lysozyme-like
mtlA	SSF52794	PTS system IIB component-like
mtlA	SSF55804	Phoshotransferase/anion transport protein
mtlD	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
mtlD	SSF51735	NAD(P)-binding Rossmann-fold domains
mtlR	SSF158668	MtlR-like
mukB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
mukF	SSF140570	MukF C-terminal domain-like
mukF	SSF46785	"Winged helix" DNA-binding domain
murA	SSF55205	EPT/RTPC-like
murB	SSF56176	FAD-binding/transporter-associated domain-like
murB	SSF56194	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
murC	SSF51984	MurCD N-terminal domain
murC	SSF53244	MurD-like peptide ligases, peptide-binding domain
murC	SSF53623	MurD-like peptide ligases, catalytic domain
murD	SSF51984	MurCD N-terminal domain
murD	SSF53244	MurD-like peptide ligases, peptide-binding domain
murD	SSF53623	MurD-like peptide ligases, catalytic domain
murE	SSF53244	MurD-like peptide ligases, peptide-binding domain
murE	SSF53623	MurD-like peptide ligases, catalytic domain
murE	SSF63418	MurE/MurF N-terminal domain
murF	SSF53244	MurD-like peptide ligases, peptide-binding domain
murF	SSF53623	MurD-like peptide ligases, catalytic domain
murF	SSF63418	MurE/MurF N-terminal domain
murG	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
murI	SSF53681	Aspartate/glutamate racemase
murP	SSF55604	Glucose permease domain IIB
mutH	SSF52980	Restriction endonuclease-like
mutL	SSF118116	DNA mismatch repair protein MutL
mutL	SSF54211	Ribosomal protein S5 domain 2-like
mutL	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
mutM	SSF46946	S13-like H2TH domain
mutM	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
mutM	SSF81624	N-terminal domain of MutM-like DNA repair proteins
mutS	SSF48334	DNA repair protein MutS, domain III
mutS	SSF52540	P-loop containing nucleoside triphosphate hydrolases
mutS	SSF53150	DNA repair protein MutS, domain II
mutS	SSF55271	DNA repair protein MutS, domain I
mutT	SSF55811	Nudix
mutY	SSF48150	DNA-glycosylase
mutY	SSF55811	Nudix
mviM	SSF51735	NAD(P)-binding Rossmann-fold domains
mviM	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
nac	SSF46785	"Winged helix" DNA-binding domain
nac	SSF53850	Periplasmic binding protein-like II
nadA	SSF142754	NadA-like
nadB	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
nadB	SSF51905	FAD/NAD(P)-binding domain
nadB	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
nadC	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
nadC	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
nadD	SSF52374	Nucleotidylyl transferase
nadE	SSF52402	Adenine nucleotide alpha hydrolases-like
nadR	SSF47413	lambda repressor-like DNA-binding domains
nadR	SSF52374	Nucleotidylyl transferase
nadR	SSF52540	P-loop containing nucleoside triphosphate hydrolases
nagA	SSF51338	Composite domain of metallo-dependent hydrolases
nagA	SSF51556	Metallo-dependent hydrolases
nagB	SSF100950	NagB/RpiA/CoA transferase-like
nagC	SSF46785	"Winged helix" DNA-binding domain
nagC	SSF53067	Actin-like ATPase domain
nagD	SSF56784	HAD-like
nagE	SSF51261	Duplicated hybrid motif
nagE	SSF55604	Glucose permease domain IIB
nagZ	SSF51445	(Trans)glycosidases
nanA	SSF51569	Aldolase
nanE	SSF51366	Ribulose-phoshate binding barrel
nanK	SSF53067	Actin-like ATPase domain
nanR	SSF46785	"Winged helix" DNA-binding domain
nanR	SSF48008	GntR ligand-binding domain-like
nanT	SSF103473	MFS general substrate transporter
napA	SSF50692	ADC-like
napA	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
napB	SSF48695	Multiheme cytochromes
napC	SSF48695	Multiheme cytochromes
napF	SSF54862	4Fe-4S ferredoxins
napG	SSF54862	4Fe-4S ferredoxins
napH	SSF54862	4Fe-4S ferredoxins
narG	SSF50692	ADC-like
narG	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
narH	SSF54862	4Fe-4S ferredoxins
narI	SSF103501	Respiratory nitrate reductase 1 gamma chain
narJ	SSF89155	TorD-like
narK	SSF103473	MFS general substrate transporter
narL	SSF46894	C-terminal effector domain of the bipartite response regulators
narL	SSF52172	CheY-like
narP	SSF46894	C-terminal effector domain of the bipartite response regulators
narP	SSF52172	CheY-like
narQ	SSF158472	HAMP domain-like
narQ	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
narU	SSF103473	MFS general substrate transporter
narV	SSF103501	Respiratory nitrate reductase 1 gamma chain
narW	SSF89155	TorD-like
narX	SSF158472	HAMP domain-like
narX	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
narY	SSF54862	4Fe-4S ferredoxins
narZ	SSF50692	ADC-like
narZ	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
ndh	SSF51905	FAD/NAD(P)-binding domain
ndk	SSF54919	Nucleoside diphosphate kinase, NDK
nei	SSF46946	S13-like H2TH domain
nei	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
nei	SSF81624	N-terminal domain of MutM-like DNA repair proteins
nemA	SSF51395	FMN-linked oxidoreductases
nfnB	SSF55469	FMN-dependent nitroreductase-like
nfo	SSF51658	Xylose isomerase-like
nfrA	SSF48452	TPR-like
nfrB	SSF160246	EspE N-terminal domain-like
nfrB	SSF53448	Nucleotide-diphospho-sugar transferases
nfsA	SSF55469	FMN-dependent nitroreductase-like
nhaR	SSF46785	"Winged helix" DNA-binding domain
nhaR	SSF53850	Periplasmic binding protein-like II
nhoA	SSF54001	Cysteine proteinases
nikA	SSF53850	Periplasmic binding protein-like II
nikB	SSF161098	MetI-like
nikC	SSF161098	MetI-like
nikD	SSF52540	P-loop containing nucleoside triphosphate hydrolases
nikE	SSF52540	P-loop containing nucleoside triphosphate hydrolases
nikR	SSF47598	Ribbon-helix-helix
nikR	SSF55021	ACT-like
nirB	SSF51905	FAD/NAD(P)-binding domain
nirB	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
nirB	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
nirD	SSF50022	ISP domain
nlpA	SSF53850	Periplasmic binding protein-like II
nlpC	SSF54001	Cysteine proteinases
nlpD	SSF51261	Duplicated hybrid motif
nlpI	SSF48452	TPR-like
nohA	SSF46955	Putative DNA-binding domain
nohB	SSF46955	Putative DNA-binding domain
norR	SSF46689	Homeodomain-like
norR	SSF52540	P-loop containing nucleoside triphosphate hydrolases
norR	SSF55781	GAF domain-like
norV	SSF52218	Flavoproteins
norV	SSF56281	Metallo-hydrolase/oxidoreductase
norV	SSF57802	Rubredoxin-like
norW	SSF51905	FAD/NAD(P)-binding domain
npr	SSF55594	HPr-like
nrdA	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
nrdA	SSF51998	PFL-like glycyl radical enzymes
nrdB	SSF47240	Ferritin-like
nrdD	SSF51998	PFL-like glycyl radical enzymes
nrdE	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
nrdE	SSF51998	PFL-like glycyl radical enzymes
nrdF	SSF47240	Ferritin-like
nrdG	SSF102114	Radical SAM enzymes
nrdH	SSF52833	Thioredoxin-like
nrdI	SSF52218	Flavoproteins
nrfA	SSF48695	Multiheme cytochromes
nrfB	SSF48695	Multiheme cytochromes
nrfC	SSF54862	4Fe-4S ferredoxins
nrfG	SSF48452	TPR-like
nth	SSF48150	DNA-glycosylase
nudB	SSF55811	Nudix
nudC	SSF55811	Nudix
nudD	SSF55811	Nudix
nudE	SSF55811	Nudix
nudF	SSF55811	Nudix
nudG	SSF55811	Nudix
nudH	SSF55811	Nudix
nuoB	SSF56770	HydA/Nqo6-like
nuoC	SSF143243	Nqo5-like
nuoC	SSF56762	HydB/Nqo4-like
nuoE	SSF52833	Thioredoxin-like
nuoF	SSF140490	Nqo1C-terminal domain-like
nuoF	SSF142019	Nqo1 FMN-binding domain-like
nuoF	SSF142984	Nqo1 middle domain-like
nuoG	SSF50692	ADC-like
nuoG	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
nuoG	SSF54292	2Fe-2S ferredoxin-like
nuoG	SSF54862	4Fe-4S ferredoxins
nuoI	SSF54862	4Fe-4S ferredoxins
nupG	SSF103473	MFS general substrate transporter
nusA	SSF47794	Rad51 N-terminal domain-like
nusA	SSF50249	Nucleic acid-binding proteins
nusA	SSF54814	Prokaryotic type KH domain (KH-domain type II)
nusA	SSF69705	Transcription factor NusA, N-terminal domain
nusB	SSF48013	NusB-like
nusG	SSF50104	Translation proteins SH3-like domain
nusG	SSF82679	N-utilization substance G protein NusG, N-terminal domain
obgE	SSF52540	P-loop containing nucleoside triphosphate hydrolases
obgE	SSF82051	Obg GTP-binding protein N-terminal domain
ogt	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
ogt	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
ompA	SSF103088	OmpA-like
ompA	SSF56925	OMPA-like
ompC	SSF56935	Porins
ompF	SSF56935	Porins
ompG	SSF56935	Porins
ompL	SSF56935	Porins
ompN	SSF56935	Porins
ompR	SSF46894	C-terminal effector domain of the bipartite response regulators
ompR	SSF52172	CheY-like
ompT	SSF69917	OMPT-like
ompW	SSF56925	OMPA-like
ompX	SSF56925	OMPA-like
oppA	SSF53850	Periplasmic binding protein-like II
oppB	SSF161098	MetI-like
oppC	SSF161098	MetI-like
oppD	SSF52540	P-loop containing nucleoside triphosphate hydrolases
oppF	SSF52540	P-loop containing nucleoside triphosphate hydrolases
orn	SSF53098	Ribonuclease H-like
osmC	SSF82784	OsmC-like
otsA	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
otsB	SSF56784	HAD-like
oxc	SSF52467	DHS-like NAD/FAD-binding domain
oxc	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
oxyR	SSF46785	"Winged helix" DNA-binding domain
oxyR	SSF53850	Periplasmic binding protein-like II
paaA	SSF47240	Ferritin-like
paaC	SSF47240	Ferritin-like
paaD	SSF117916	Fe-S cluster assembly (FSCA) domain-like
paaE	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
paaE	SSF54292	2Fe-2S ferredoxin-like
paaE	SSF63380	Riboflavin synthase domain-like
paaF	SSF52096	ClpP/crotonase
paaG	SSF52096	ClpP/crotonase
paaH	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
paaH	SSF51735	NAD(P)-binding Rossmann-fold domains
paaI	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
paaJ	SSF53901	Thiolase-like
paaK	SSF56801	Acetyl-CoA synthetase-like
paaY	SSF51161	Trimeric LpxA-like enzymes
pabA	SSF52317	Class I glutamine amidotransferase-like
pabB	SSF56322	ADC synthase
pabC	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
pal	SSF103088	OmpA-like
panB	SSF51621	Phosphoenolpyruvate/pyruvate domain
panC	SSF52374	Nucleotidylyl transferase
panD	SSF50692	ADC-like
panE	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
panE	SSF51735	NAD(P)-binding Rossmann-fold domains
parC	SSF101904	GyrA/ParC C-terminal domain-like
parC	SSF56719	Type II DNA topoisomerase
parE	SSF54211	Ribosomal protein S5 domain 2-like
parE	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
parE	SSF56719	Type II DNA topoisomerase
pbpC	SSF53955	Lysozyme-like
pbpC	SSF56601	beta-lactamase/transpeptidase-like
pbpG	SSF56601	beta-lactamase/transpeptidase-like
pck	SSF53795	PEP carboxykinase-like
pck	SSF68923	PEP carboxykinase N-terminal domain
pcm	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
pcnB	SSF81301	Nucleotidyltransferase
pcnB	SSF81891	Poly A polymerase C-terminal region-like
pdhR	SSF46785	"Winged helix" DNA-binding domain
pdhR	SSF48008	GntR ligand-binding domain-like
pdxA	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
pdxB	SSF51735	NAD(P)-binding Rossmann-fold domains
pdxB	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
pdxH	SSF50475	FMN-binding split barrel
pdxJ	SSF63892	Pyridoxine 5'-phosphate synthase
pdxK	SSF53613	Ribokinase-like
pdxY	SSF53613	Ribokinase-like
pepA	SSF52949	Macro domain-like
pepA	SSF53187	Zn-dependent exopeptidases
pepB	SSF53187	Zn-dependent exopeptidases
pepD	SSF53187	Zn-dependent exopeptidases
pepE	SSF52317	Class I glutamine amidotransferase-like
pepN	SSF55486	Metalloproteases ("zincins"), catalytic domain
pepN	SSF63737	Leukotriene A4 hydrolase N-terminal domain
pepP	SSF53092	Creatinase/prolidase N-terminal domain
pepP	SSF55920	Creatinase/aminopeptidase
pepQ	SSF55920	Creatinase/aminopeptidase
pepT	SSF53187	Zn-dependent exopeptidases
pepT	SSF55031	Bacterial exopeptidase dimerisation domain
perR	SSF46785	"Winged helix" DNA-binding domain
perR	SSF53850	Periplasmic binding protein-like II
pfkA	SSF53784	Phosphofructokinase
pfkB	SSF53613	Ribokinase-like
pflA	SSF102114	Radical SAM enzymes
pflB	SSF51998	PFL-like glycyl radical enzymes
pflC	SSF102114	Radical SAM enzymes
pflC	SSF54862	4Fe-4S ferredoxins
pflD	SSF51998	PFL-like glycyl radical enzymes
pfs	SSF53167	Purine and uridine phosphorylases
pgi	SSF53697	SIS domain
pgk	SSF53748	Phosphoglycerate kinase
pgm	SSF53738	Phosphoglucomutase, first 3 domains
pgm	SSF55957	Phosphoglucomutase, C-terminal domain
pgpA	SSF101307	YutG-like
pgpB	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
pheA	SSF48600	Chorismate mutase II
pheA	SSF53850	Periplasmic binding protein-like II
pheA	SSF55021	ACT-like
pheS	SSF46589	tRNA-binding arm
pheS	SSF55681	Class II aaRS and biotin synthetases
pheT	SSF46955	Putative DNA-binding domain
pheT	SSF50249	Nucleic acid-binding proteins
pheT	SSF54991	Anticodon-binding domain of PheRS
pheT	SSF55681	Class II aaRS and biotin synthetases
pheT	SSF56037	PheT/TilS domain
phnA	SSF57783	Zinc beta-ribbon
phnA	SSF82057	Prokaryotic SH3-related domain
phnB	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
phnC	SSF52540	P-loop containing nucleoside triphosphate hydrolases
phnD	SSF53850	Periplasmic binding protein-like II
phnF	SSF46785	"Winged helix" DNA-binding domain
phnF	SSF64288	Chorismate lyase-like
phnH	SSF159709	PhnH-like
phnK	SSF52540	P-loop containing nucleoside triphosphate hydrolases
phnL	SSF52540	P-loop containing nucleoside triphosphate hydrolases
phnM	SSF51338	Composite domain of metallo-dependent hydrolases
phnM	SSF51556	Metallo-dependent hydrolases
phnN	SSF52540	P-loop containing nucleoside triphosphate hydrolases
phnO	SSF55729	Acyl-CoA N-acyltransferases (Nat)
phnP	SSF56281	Metallo-hydrolase/oxidoreductase
phoA	SSF53649	Alkaline phosphatase-like
phoB	SSF52172	CheY-like
phoE	SSF56935	Porins
phoH	SSF52540	P-loop containing nucleoside triphosphate hydrolases
phoP	SSF52172	CheY-like
phoQ	SSF47384	Homodimeric domain of signal transducing histidine kinase
phoQ	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
phoR	SSF47384	Homodimeric domain of signal transducing histidine kinase
phoR	SSF55785	PYP-like sensor domain (PAS domain)
phoR	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
phoU	SSF109755	PhoU-like
php	SSF51556	Metallo-dependent hydrolases
phr	SSF48173	Cryptochrome/photolyase FAD-binding domain
phr	SSF52425	Cryptochrome/photolyase, N-terminal domain
pin	SSF46689	Homeodomain-like
pin	SSF53041	Resolvase-like
pinQ	SSF46689	Homeodomain-like
pinQ	SSF53041	Resolvase-like
pinR	SSF46689	Homeodomain-like
pinR	SSF53041	Resolvase-like
pldA	SSF56931	Outer membrane phospholipase A (OMPLA)
pldB	SSF53474	alpha/beta-Hydrolases
plsB	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
plsC	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
plsX	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
pmbA	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
pncA	SSF52499	Isochorismatase-like hydrolases
pncB	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
pncB	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
pnp	SSF46915	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
pnp	SSF50249	Nucleic acid-binding proteins
pnp	SSF54211	Ribosomal protein S5 domain 2-like
pnp	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
pnp	SSF55666	Ribonuclease PH domain 2-like
pntA	SSF51735	NAD(P)-binding Rossmann-fold domains
pntA	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
pntB	SSF52467	DHS-like NAD/FAD-binding domain
polA	SSF47807	5' to 3' exonuclease, C-terminal subdomain
polA	SSF53098	Ribonuclease H-like
polA	SSF56672	DNA/RNA polymerases
polA	SSF88723	PIN domain-like
polB	SSF53098	Ribonuclease H-like
polB	SSF56672	DNA/RNA polymerases
potA	SSF50331	MOP-like
potA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
potB	SSF161098	MetI-like
potC	SSF161098	MetI-like
potD	SSF53850	Periplasmic binding protein-like II
potF	SSF53850	Periplasmic binding protein-like II
potG	SSF50331	MOP-like
potG	SSF52540	P-loop containing nucleoside triphosphate hydrolases
potH	SSF161098	MetI-like
potI	SSF161098	MetI-like
poxA	SSF55681	Class II aaRS and biotin synthetases
poxB	SSF52467	DHS-like NAD/FAD-binding domain
poxB	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
ppa	SSF50324	Inorganic pyrophosphatase
ppc	SSF51621	Phosphoenolpyruvate/pyruvate domain
ppdA	SSF54523	Pili subunits
ppdD	SSF54523	Pili subunits
pphA	SSF56300	Metallo-dependent phosphatases
pphB	SSF56300	Metallo-dependent phosphatases
ppiA	SSF50891	Cyclophilin-like
ppiB	SSF50891	Cyclophilin-like
ppiC	SSF54534	FKBP-like
ppiD	SSF109998	Triger factor/SurA peptide-binding domain-like
ppiD	SSF54534	FKBP-like
ppk	SSF140356	PPK N-terminal domain-like
ppk	SSF143724	PHP14-like
ppk	SSF56024	Phospholipase D/nuclease
pps	SSF51621	Phosphoenolpyruvate/pyruvate domain
pps	SSF52009	Phosphohistidine domain
pps	SSF56059	Glutathione synthetase ATP-binding domain-like
ppx	SSF109604	HD-domain/PDEase-like
ppx	SSF53067	Actin-like ATPase domain
pqqL	SSF63411	LuxS/MPP-like metallohydrolase
prc	SSF50156	PDZ domain-like
prc	SSF52096	ClpP/crotonase
prfA	SSF75620	Release factor
prfB	SSF75620	Release factor
prfC	SSF50447	Translation proteins
prfC	SSF52540	P-loop containing nucleoside triphosphate hydrolases
prfC	SSF54980	EF-G C-terminal domain-like
prfH	SSF75620	Release factor
priA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
priB	SSF50249	Nucleic acid-binding proteins
prkB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
prlC	SSF55486	Metalloproteases ("zincins"), catalytic domain
prmA	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
prmB	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
prmC	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
proA	SSF53720	ALDH-like
proB	SSF53633	Carbamate kinase-like
proB	SSF88697	PUA domain-like
proC	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
proC	SSF51735	NAD(P)-binding Rossmann-fold domains
proP	SSF103473	MFS general substrate transporter
proP	SSF103661	Proline/betaine transporter ProP, C-terminal cytoplasmic domain
proQ	SSF48657	FinO-like
proS	SSF52954	Class II aaRS ABD-related
proS	SSF55681	Class II aaRS and biotin synthetases
proS	SSF55826	YbaK/ProRS associated domain
proV	SSF52540	P-loop containing nucleoside triphosphate hydrolases
proV	SSF54631	CBS-domain pair
proW	SSF161098	MetI-like
proX	SSF53850	Periplasmic binding protein-like II
prpB	SSF51621	Phosphoenolpyruvate/pyruvate domain
prpC	SSF48256	Citrate synthase
prpD	SSF103378	2-methylcitrate dehydratase PrpD
prpE	SSF56801	Acetyl-CoA synthetase-like
prpR	SSF159800	PrpR receptor domain-like
prpR	SSF46689	Homeodomain-like
prpR	SSF52540	P-loop containing nucleoside triphosphate hydrolases
prsA	SSF53271	PRTase-like
pspE	SSF52821	Rhodanese/Cell cycle control phosphatase
pspF	SSF46689	Homeodomain-like
pspF	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pssA	SSF56024	Phospholipase D/nuclease
pstA	SSF161098	MetI-like
pstB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pstC	SSF161098	MetI-like
pstS	SSF53850	Periplasmic binding protein-like II
pta	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pta	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
pta	SSF75138	HprK N-terminal domain-like
pth	SSF53178	Peptidyl-tRNA hydrolase-like
ptr	SSF63411	LuxS/MPP-like metallohydrolase
ptrB	SSF50993	Peptidase/esterase 'gauge' domain
ptrB	SSF53474	alpha/beta-Hydrolases
ptsA	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
ptsA	SSF51621	Phosphoenolpyruvate/pyruvate domain
ptsA	SSF52009	Phosphohistidine domain
ptsA	SSF55594	HPr-like
ptsA	SSF55804	Phoshotransferase/anion transport protein
ptsG	SSF55604	Glucose permease domain IIB
ptsH	SSF55594	HPr-like
ptsI	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
ptsI	SSF51621	Phosphoenolpyruvate/pyruvate domain
ptsI	SSF52009	Phosphohistidine domain
ptsN	SSF55804	Phoshotransferase/anion transport protein
ptsP	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
ptsP	SSF51621	Phosphoenolpyruvate/pyruvate domain
ptsP	SSF52009	Phosphohistidine domain
ptsP	SSF55781	GAF domain-like
purA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
purB	SSF48557	L-aspartase-like
purC	SSF56104	SAICAR synthase-like
purD	SSF51246	Rudiment single hybrid motif
purD	SSF52440	PreATP-grasp domain
purD	SSF56059	Glutathione synthetase ATP-binding domain-like
purE	SSF52255	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
purF	SSF53271	PRTase-like
purF	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
purH	SSF52335	Methylglyoxal synthase-like
purH	SSF53927	Cytidine deaminase-like
purK	SSF51246	Rudiment single hybrid motif
purK	SSF52440	PreATP-grasp domain
purK	SSF56059	Glutathione synthetase ATP-binding domain-like
purL	SSF109736	FGAM synthase PurL, linker domain
purL	SSF52317	Class I glutamine amidotransferase-like
purL	SSF55326	PurM N-terminal domain-like
purL	SSF56042	PurM C-terminal domain-like
purL	SSF82697	PurS-like
purM	SSF55326	PurM N-terminal domain-like
purM	SSF56042	PurM C-terminal domain-like
purN	SSF53328	Formyltransferase
purR	SSF47413	lambda repressor-like DNA-binding domains
purR	SSF53822	Periplasmic binding protein-like I
purT	SSF51246	Rudiment single hybrid motif
purT	SSF52440	PreATP-grasp domain
purT	SSF56059	Glutathione synthetase ATP-binding domain-like
purU	SSF53328	Formyltransferase
purU	SSF55021	ACT-like
putA	SSF47598	Ribbon-helix-helix
putA	SSF51730	FAD-linked oxidoreductase
putA	SSF53720	ALDH-like
putA	SSF81935	N-terminal domain of bifunctional PutA protein
puuA	SSF54368	Glutamine synthetase, N-terminal domain
puuA	SSF55931	Glutamine synthetase/guanido kinase
puuB	SSF51905	FAD/NAD(P)-binding domain
puuC	SSF53720	ALDH-like
puuD	SSF52317	Class I glutamine amidotransferase-like
puuE	SSF53383	PLP-dependent transferases
puuR	SSF47413	lambda repressor-like DNA-binding domains
puuR	SSF51182	RmlC-like cupins
pykA	SSF50800	PK beta-barrel domain-like
pykA	SSF51621	Phosphoenolpyruvate/pyruvate domain
pykA	SSF52935	PK C-terminal domain-like
pykF	SSF50800	PK beta-barrel domain-like
pykF	SSF51621	Phosphoenolpyruvate/pyruvate domain
pykF	SSF52935	PK C-terminal domain-like
pyrB	SSF53671	Aspartate/ornithine carbamoyltransferase
pyrC	SSF51556	Metallo-dependent hydrolases
pyrD	SSF51395	FMN-linked oxidoreductases
pyrE	SSF53271	PRTase-like
pyrF	SSF51366	Ribulose-phoshate binding barrel
pyrG	SSF52317	Class I glutamine amidotransferase-like
pyrG	SSF52540	P-loop containing nucleoside triphosphate hydrolases
pyrH	SSF53633	Carbamate kinase-like
pyrI	SSF54893	Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
pyrI	SSF57825	Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
qor	SSF50129	GroES-like
qor	SSF51735	NAD(P)-binding Rossmann-fold domains
qseB	SSF52172	CheY-like
qseC	SSF47384	Homodimeric domain of signal transducing histidine kinase
qseC	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
queA	SSF111337	QueA-like
radA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
radA	SSF54211	Ribosomal protein S5 domain 2-like
rarA	SSF53474	alpha/beta-Hydrolases
rarD	SSF103481	Multidrug resistance efflux transporter EmrE
rbbA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
rbfA	SSF89919	Ribosome-binding factor A, RbfA
rbsA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
rbsB	SSF53822	Periplasmic binding protein-like I
rbsD	SSF102546	RbsD-like
rbsK	SSF53613	Ribokinase-like
rbsR	SSF47413	lambda repressor-like DNA-binding domains
rbsR	SSF53822	Periplasmic binding protein-like I
rcsA	SSF46894	C-terminal effector domain of the bipartite response regulators
rcsB	SSF46894	C-terminal effector domain of the bipartite response regulators
rcsB	SSF52172	CheY-like
rcsC	SSF47384	Homodimeric domain of signal transducing histidine kinase
rcsC	SSF52172	CheY-like
rcsC	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
rcsD	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
rcsD	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
recA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
recA	SSF54752	RecA protein, C-terminal domain
recB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
recB	SSF52980	Restriction endonuclease-like
recC	SSF52540	P-loop containing nucleoside triphosphate hydrolases
recC	SSF52980	Restriction endonuclease-like
recD	SSF52540	P-loop containing nucleoside triphosphate hydrolases
recF	SSF52540	P-loop containing nucleoside triphosphate hydrolases
recG	SSF50249	Nucleic acid-binding proteins
recG	SSF52540	P-loop containing nucleoside triphosphate hydrolases
recJ	SSF64182	DHH phosphoesterases
recN	SSF52540	P-loop containing nucleoside triphosphate hydrolases
recO	SSF50249	Nucleic acid-binding proteins
recO	SSF57863	ArfGap/RecO-like zinc finger
recQ	SSF47819	HRDC-like
recQ	SSF52540	P-loop containing nucleoside triphosphate hydrolases
recR	SSF111304	Recombination protein RecR
relA	SSF109604	HD-domain/PDEase-like
relA	SSF55021	ACT-like
relA	SSF81271	TGS-like
relA	SSF81301	Nucleotidyltransferase
relE	SSF143011	RelE-like
rep	SSF52540	P-loop containing nucleoside triphosphate hydrolases
rfaB	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
rfaC	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
rfaD	SSF51735	NAD(P)-binding Rossmann-fold domains
rfaE	SSF52374	Nucleotidylyl transferase
rfaE	SSF53613	Ribokinase-like
rfaF	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
rfaG	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
rfaH	SSF82679	N-utilization substance G protein NusG, N-terminal domain
rfaI	SSF53448	Nucleotide-diphospho-sugar transferases
rfaJ	SSF53448	Nucleotide-diphospho-sugar transferases
rfaK	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
rfaP	SSF56112	Protein kinase-like (PK-like)
rfaQ	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
rfaY	SSF56112	Protein kinase-like (PK-like)
rfbA	SSF53448	Nucleotide-diphospho-sugar transferases
rfbB	SSF51735	NAD(P)-binding Rossmann-fold domains
rfbC	SSF51182	RmlC-like cupins
rfbD	SSF51735	NAD(P)-binding Rossmann-fold domains
rffA	SSF53383	PLP-dependent transferases
rffC	SSF55729	Acyl-CoA N-acyltransferases (Nat)
rffD	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
rffD	SSF51735	NAD(P)-binding Rossmann-fold domains
rffD	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
rffE	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
rffG	SSF51735	NAD(P)-binding Rossmann-fold domains
rffH	SSF53448	Nucleotide-diphospho-sugar transferases
rhaA	SSF51658	Xylose isomerase-like
rhaB	SSF53067	Actin-like ATPase domain
rhaD	SSF53639	AraD/HMP-PK domain-like
rhaR	SSF46689	Homeodomain-like
rhaR	SSF51182	RmlC-like cupins
rhaS	SSF46689	Homeodomain-like
rhaS	SSF51215	Regulatory protein AraC
rhlB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
rhlE	SSF52540	P-loop containing nucleoside triphosphate hydrolases
rho	SSF50249	Nucleic acid-binding proteins
rho	SSF52540	P-loop containing nucleoside triphosphate hydrolases
rho	SSF68912	Rho N-terminal domain-like
rhtA	SSF103481	Multidrug resistance efflux transporter EmrE
ribA	SSF142695	RibA-like
ribB	SSF55821	YrdC/RibB
ribC	SSF63380	Riboflavin synthase domain-like
ribD	SSF53597	Dihydrofolate reductase-like
ribD	SSF53927	Cytidine deaminase-like
ribE	SSF52121	Lumazine synthase
ribF	SSF52374	Nucleotidylyl transferase
ribF	SSF82114	Riboflavin kinase-like
rihA	SSF53590	Nucleoside hydrolase
rihB	SSF53590	Nucleoside hydrolase
rihC	SSF53590	Nucleoside hydrolase
rimI	SSF55729	Acyl-CoA N-acyltransferases (Nat)
rimJ	SSF55729	Acyl-CoA N-acyltransferases (Nat)
rimK	SSF56059	Glutathione synthetase ATP-binding domain-like
rimL	SSF55729	Acyl-CoA N-acyltransferases (Nat)
rimM	SSF50346	PRC-barrel domain
rimM	SSF50447	Translation proteins
rlmB	SSF55315	L30e-like
rlmB	SSF75217	alpha/beta knot
rlpA	SSF110997	Sporulation related repeat
rlpA	SSF50685	Barwin-like endoglucanases
rluA	SSF55120	Pseudouridine synthase
rluB	SSF55120	Pseudouridine synthase
rluB	SSF55174	Alpha-L RNA-binding motif
rluC	SSF55120	Pseudouridine synthase
rluC	SSF55174	Alpha-L RNA-binding motif
rluD	SSF55120	Pseudouridine synthase
rluD	SSF55174	Alpha-L RNA-binding motif
rna	SSF55895	Ribonuclease Rh-like
rnb	SSF50249	Nucleic acid-binding proteins
rnc	SSF54768	dsRNA-binding domain-like
rnc	SSF69065	RNase III domain-like
rnd	SSF47819	HRDC-like
rnd	SSF53098	Ribonuclease H-like
rne	SSF50249	Nucleic acid-binding proteins
rng	SSF50249	Nucleic acid-binding proteins
rnhA	SSF53098	Ribonuclease H-like
rnhB	SSF53098	Ribonuclease H-like
rnk	SSF54534	FKBP-like
rnpA	SSF54211	Ribosomal protein S5 domain 2-like
rnr	SSF50249	Nucleic acid-binding proteins
rnt	SSF53098	Ribonuclease H-like
rob	SSF46689	Homeodomain-like
rob	SSF55136	Probable bacterial effector-binding domain
rof	SSF101744	Rof/RNase P subunit-like
rpe	SSF51366	Ribulose-phoshate binding barrel
rpiA	SSF100950	NagB/RpiA/CoA transferase-like
rpiA	SSF75445	D-ribose-5-phosphate isomerase (RpiA), lid domain
rpiB	SSF89623	Ribose/Galactose isomerase RpiB/AlsB
rpiR	SSF46689	Homeodomain-like
rpiR	SSF53697	SIS domain
rplA	SSF56808	Ribosomal protein L1
rplB	SSF50104	Translation proteins SH3-like domain
rplB	SSF50249	Nucleic acid-binding proteins
rplC	SSF50447	Translation proteins
rplD	SSF52166	Ribosomal protein L4
rplE	SSF55282	RL5-like
rplF	SSF56053	Ribosomal protein L6
rplI	SSF55653	Ribosomal protein L9 C-domain
rplI	SSF55658	L9 N-domain-like
rplJ	SSF160369	Ribosomal protein L10-like
rplK	SSF46906	Ribosomal protein L11, C-terminal domain
rplK	SSF54747	Ribosomal L11/L12e N-terminal domain
rplL	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain
rplL	SSF54736	ClpS-like
rplM	SSF52161	Ribosomal protein L13
rplN	SSF50193	Ribosomal protein L14
rplO	SSF52080	Ribosomal proteins L15p and L18e
rplP	SSF54686	Ribosomal protein L16p/L10e
rplQ	SSF64263	Prokaryotic ribosomal protein L17
rplR	SSF53137	Translational machinery components
rplS	SSF50104	Translation proteins SH3-like domain
rplT	SSF74731	Ribosomal protein L20
rplU	SSF141091	L21p-like
rplV	SSF54843	Ribosomal protein L22
rplW	SSF54189	Ribosomal proteins S24e, L23 and L15e
rplX	SSF50104	Translation proteins SH3-like domain
rplY	SSF50715	Ribosomal protein L25-like
rpmA	SSF110324	Ribosomal L27 protein-like
rpmB	SSF143800	L28p-like
rpmC	SSF46561	Ribosomal protein L29 (L29p)
rpmD	SSF55129	Ribosomal protein L30p/L7e
rpmE	SSF143800	L28p-like
rpmF	SSF57829	Zn-binding ribosomal proteins
rpmG	SSF57829	Zn-binding ribosomal proteins
rpmI	SSF143034	L35p-like
rpmJ	SSF57840	Ribosomal protein L36
rpoA	SSF47789	C-terminal domain of RNA polymerase alpha subunit
rpoA	SSF55257	RBP11-like subunits of RNA polymerase
rpoA	SSF56553	Insert subdomain of RNA polymerase alpha subunit
rpoB	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
rpoC	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
rpoD	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
rpoD	SSF88946	Sigma2 domain of RNA polymerase sigma factors
rpoE	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
rpoE	SSF88946	Sigma2 domain of RNA polymerase sigma factors
rpoH	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
rpoH	SSF88946	Sigma2 domain of RNA polymerase sigma factors
rpoS	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
rpoS	SSF88946	Sigma2 domain of RNA polymerase sigma factors
rpoZ	SSF63562	RPB6/omega subunit-like
rpsA	SSF50249	Nucleic acid-binding proteins
rpsB	SSF52313	Ribosomal protein S2
rpsC	SSF54814	Prokaryotic type KH domain (KH-domain type II)
rpsC	SSF54821	Ribosomal protein S3 C-terminal domain
rpsD	SSF55174	Alpha-L RNA-binding motif
rpsE	SSF54211	Ribosomal protein S5 domain 2-like
rpsE	SSF54768	dsRNA-binding domain-like
rpsF	SSF54995	Ribosomal protein S6
rpsG	SSF47973	Ribosomal protein S7
rpsH	SSF56047	Ribosomal protein S8
rpsI	SSF54211	Ribosomal protein S5 domain 2-like
rpsJ	SSF54999	Ribosomal protein S10
rpsK	SSF53137	Translational machinery components
rpsL	SSF50249	Nucleic acid-binding proteins
rpsM	SSF46946	S13-like H2TH domain
rpsN	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
rpsO	SSF47060	S15/NS1 RNA-binding domain
rpsP	SSF54565	Ribosomal protein S16
rpsQ	SSF50249	Nucleic acid-binding proteins
rpsR	SSF46911	Ribosomal protein S18
rpsS	SSF54570	Ribosomal protein S19
rpsT	SSF46992	Ribosomal protein S20
rraA	SSF89562	RraA-like
rrmA	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
rrmJ	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
rseA	SSF89069	N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
rsgA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
rsmB	SSF48013	NusB-like
rsmB	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
rsmC	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
rspA	SSF51604	Enolase C-terminal domain-like
rspA	SSF54826	Enolase N-terminal domain-like
rspB	SSF50129	GroES-like
rspB	SSF51735	NAD(P)-binding Rossmann-fold domains
rssA	SSF52151	FabD/lysophospholipase-like
rssB	SSF52172	CheY-like
rstA	SSF46894	C-terminal effector domain of the bipartite response regulators
rstA	SSF52172	CheY-like
rstB	SSF47384	Homodimeric domain of signal transducing histidine kinase
rstB	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
rsuA	SSF55120	Pseudouridine synthase
rsuA	SSF55174	Alpha-L RNA-binding motif
rsxB	SSF54862	4Fe-4S ferredoxins
rsxC	SSF142019	Nqo1 FMN-binding domain-like
rsxC	SSF46548	alpha-helical ferredoxin
rtcA	SSF52913	RNA 3'-terminal phosphate cyclase, RPTC, insert domain
rtcA	SSF55205	EPT/RTPC-like
rtcB	SSF103365	Hypothetical protein PH1602
rtcR	SSF52540	P-loop containing nucleoside triphosphate hydrolases
rtn	SSF141868	EAL domain-like
rumA	SSF50249	Nucleic acid-binding proteins
rumA	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
rumB	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
rusA	SSF103084	Holliday junction resolvase RusA
ruvA	SSF46929	DNA helicase RuvA subunit, C-terminal domain
ruvA	SSF47781	RuvA domain 2-like
ruvA	SSF50249	Nucleic acid-binding proteins
ruvB	SSF46785	"Winged helix" DNA-binding domain
ruvB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ruvC	SSF53098	Ribonuclease H-like
sapA	SSF53850	Periplasmic binding protein-like II
sapB	SSF161098	MetI-like
sapC	SSF161098	MetI-like
sapD	SSF52540	P-loop containing nucleoside triphosphate hydrolases
sapF	SSF52540	P-loop containing nucleoside triphosphate hydrolases
sbcB	SSF53098	Ribonuclease H-like
sbcC	SSF52540	P-loop containing nucleoside triphosphate hydrolases
sbcD	SSF56300	Metallo-dependent phosphatases
sbmA	SSF90123	ABC transporter transmembrane region
sbmC	SSF55136	Probable bacterial effector-binding domain
sbp	SSF53850	Periplasmic binding protein-like II
sdaA	SSF143548	Serine metabolism enzymes domain
sdaB	SSF143548	Serine metabolism enzymes domain
sdhA	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
sdhA	SSF51905	FAD/NAD(P)-binding domain
sdhA	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
sdhB	SSF46548	alpha-helical ferredoxin
sdhB	SSF54292	2Fe-2S ferredoxin-like
sdhC	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
sdhD	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
sdiA	SSF46894	C-terminal effector domain of the bipartite response regulators
sdiA	SSF75516	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
secA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
secA	SSF81767	Pre-protein crosslinking domain of SecA
secA	SSF81886	Helical scaffold and wing domains of SecA
secB	SSF54611	SecB-like
secD	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
secF	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
secY	SSF103491	Preprotein translocase SecY subunit
selA	SSF53383	PLP-dependent transferases
selB	SSF46785	"Winged helix" DNA-binding domain
selB	SSF50447	Translation proteins
selB	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
selB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
selD	SSF55326	PurM N-terminal domain-like
selD	SSF56042	PurM C-terminal domain-like
seqA	SSF47598	Ribbon-helix-helix
seqA	SSF82808	Replication modulator SeqA, C-terminal DNA-binding domain
serA	SSF51735	NAD(P)-binding Rossmann-fold domains
serA	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
serA	SSF55021	ACT-like
serB	SSF56784	HAD-like
serC	SSF53383	PLP-dependent transferases
serS	SSF46589	tRNA-binding arm
serS	SSF55681	Class II aaRS and biotin synthetases
setA	SSF103473	MFS general substrate transporter
setB	SSF103473	MFS general substrate transporter
setC	SSF103473	MFS general substrate transporter
sfcA	SSF51735	NAD(P)-binding Rossmann-fold domains
sfcA	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
sfmA	SSF49401	Bacterial adhesins
sfmC	SSF49354	PapD-like
sfmC	SSF49584	Periplasmic chaperone C-domain
sfmD	SSF141729	FimD N-terminal domain-like
sfmF	SSF49401	Bacterial adhesins
sfmH	SSF49401	Bacterial adhesins
sfsB	SSF47413	lambda repressor-like DNA-binding domains
sgbE	SSF53639	AraD/HMP-PK domain-like
sgbH	SSF51366	Ribulose-phoshate binding barrel
sgbU	SSF51658	Xylose isomerase-like
sgcA	SSF55804	Phoshotransferase/anion transport protein
sgcB	SSF52794	PTS system IIB component-like
sgcE	SSF51366	Ribulose-phoshate binding barrel
sgcQ	SSF51366	Ribulose-phoshate binding barrel
sgcR	SSF100950	NagB/RpiA/CoA transferase-like
sgcX	SSF101821	Aminopeptidase/glucanase lid domain
sgcX	SSF53187	Zn-dependent exopeptidases
sgrR	SSF53850	Periplasmic binding protein-like II
shiA	SSF103473	MFS general substrate transporter
sixA	SSF53254	Phosphoglycerate mutase-like
slt	SSF48435	Bacterial muramidases
slt	SSF53955	Lysozyme-like
slyA	SSF46785	"Winged helix" DNA-binding domain
slyD	SSF54534	FKBP-like
smf	SSF102405	MCP/YpsA-like
smpB	SSF74982	Small protein B (SmpB)
smtA	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
sodA	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
sodA	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
sodB	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
sodB	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
sodC	SSF49329	Cu,Zn superoxide dismutase-like
sohA	SSF89447	AbrB/MazE/MraZ-like
sohB	SSF52096	ClpP/crotonase
solA	SSF51905	FAD/NAD(P)-binding domain
solA	SSF54373	FAD-linked reductases, C-terminal domain
soxR	SSF46955	Putative DNA-binding domain
soxS	SSF46689	Homeodomain-like
speA	SSF50621	Alanine racemase C-terminal domain-like
speA	SSF51419	PLP-binding barrel
speB	SSF52768	Arginase/deacetylase
speC	SSF52172	CheY-like
speC	SSF53383	PLP-dependent transferases
speC	SSF55904	Ornithine decarboxylase C-terminal domain
speD	SSF56276	S-adenosylmethionine decarboxylase
speE	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
speF	SSF52172	CheY-like
speF	SSF53383	PLP-dependent transferases
speF	SSF55904	Ornithine decarboxylase C-terminal domain
speG	SSF55729	Acyl-CoA N-acyltransferases (Nat)
spoT	SSF109604	HD-domain/PDEase-like
spoT	SSF55021	ACT-like
spoT	SSF81271	TGS-like
spoT	SSF81301	Nucleotidyltransferase
sppA	SSF52096	ClpP/crotonase
spr	SSF54001	Cysteine proteinases
srlB	SSF141530	PTSIIA/GutA-like
srlD	SSF51735	NAD(P)-binding Rossmann-fold domains
srlR	SSF100950	NagB/RpiA/CoA transferase-like
srlR	SSF46785	"Winged helix" DNA-binding domain
srmB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ssb	SSF50249	Nucleic acid-binding proteins
sseA	SSF52821	Rhodanese/Cell cycle control phosphatase
ssnA	SSF51338	Composite domain of metallo-dependent hydrolases
ssnA	SSF51556	Metallo-dependent hydrolases
sspA	SSF47616	GST C-terminal domain-like
sspA	SSF52833	Thioredoxin-like
sspB	SSF101738	SspB-like
sstT	SSF118215	Proton glutamate symport protein
ssuA	SSF53850	Periplasmic binding protein-like II
ssuB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ssuC	SSF161098	MetI-like
ssuD	SSF51679	Bacterial luciferase-like
ssuE	SSF52218	Flavoproteins
stfQ	SSF88874	Receptor-binding domain of short tail fibre protein gp12
stfR	SSF49464	Carboxypeptidase regulatory domain-like
stfR	SSF88874	Receptor-binding domain of short tail fibre protein gp12
sthA	SSF51905	FAD/NAD(P)-binding domain
sthA	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
stpA	SSF81273	H-NS histone-like proteins
sucA	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
sucB	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
sucB	SSF51230	Single hybrid motif
sucB	SSF52777	CoA-dependent acyltransferases
sucC	SSF52210	Succinyl-CoA synthetase domains
sucC	SSF56059	Glutathione synthetase ATP-binding domain-like
sucD	SSF51735	NAD(P)-binding Rossmann-fold domains
sucD	SSF52210	Succinyl-CoA synthetase domains
sufA	SSF89360	HesB-like domain
sufB	SSF101960	Stabilizer of iron transporter SufD
sufC	SSF52540	P-loop containing nucleoside triphosphate hydrolases
sufD	SSF101960	Stabilizer of iron transporter SufD
sufE	SSF82649	SufE/NifU
sufI	SSF49503	Cupredoxins
sufS	SSF53383	PLP-dependent transferases
sugE	SSF103481	Multidrug resistance efflux transporter EmrE
suhB	SSF56655	Carbohydrate phosphatase
sulA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
surA	SSF109998	Triger factor/SurA peptide-binding domain-like
surA	SSF54534	FKBP-like
surE	SSF64167	SurE-like
tadA	SSF53927	Cytidine deaminase-like
tag	SSF48150	DNA-glycosylase
talA	SSF51569	Aldolase
talB	SSF51569	Aldolase
tam	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
tap	SSF47170	Aspartate receptor, ligand-binding domain
tap	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
tar	SSF47170	Aspartate receptor, ligand-binding domain
tar	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
tas	SSF51430	NAD(P)-linked oxidoreductase
tatD	SSF51556	Metallo-dependent hydrolases
tauA	SSF53850	Periplasmic binding protein-like II
tauB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
tauC	SSF161098	MetI-like
tauD	SSF51197	Clavaminate synthase-like
tbpA	SSF53850	Periplasmic binding protein-like II
tdcA	SSF46785	"Winged helix" DNA-binding domain
tdcA	SSF53850	Periplasmic binding protein-like II
tdcB	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
tdcD	SSF53067	Actin-like ATPase domain
tdcE	SSF51998	PFL-like glycyl radical enzymes
tdcF	SSF55298	YjgF-like
tdcG	SSF143548	Serine metabolism enzymes domain
tdh	SSF50129	GroES-like
tdh	SSF51735	NAD(P)-binding Rossmann-fold domains
tdk	SSF52540	P-loop containing nucleoside triphosphate hydrolases
tdk	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
tehB	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
tesA	SSF52266	SGNH hydrolase
tesB	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
tgt	SSF51713	tRNA-guanine transglycosylase
thiD	SSF53613	Ribokinase-like
thiE	SSF51391	Thiamin phosphate synthase
thiF	SSF69572	Activating enzymes of the ubiquitin-like proteins
thiG	SSF110399	ThiG-like
thiH	SSF102114	Radical SAM enzymes
thiI	SSF143437	THUMP domain-like
thiI	SSF52402	Adenine nucleotide alpha hydrolases-like
thiI	SSF52821	Rhodanese/Cell cycle control phosphatase
thiL	SSF55326	PurM N-terminal domain-like
thiL	SSF56042	PurM C-terminal domain-like
thiM	SSF53613	Ribokinase-like
thiP	SSF161098	MetI-like
thiQ	SSF52540	P-loop containing nucleoside triphosphate hydrolases
thiS	SSF54285	MoaD/ThiS
thrA	SSF51735	NAD(P)-binding Rossmann-fold domains
thrA	SSF53633	Carbamate kinase-like
thrA	SSF55021	ACT-like
thrA	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
thrB	SSF54211	Ribosomal protein S5 domain 2-like
thrB	SSF55060	GHMP Kinase, C-terminal domain
thrC	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
thrS	SSF52954	Class II aaRS ABD-related
thrS	SSF55186	ThrRS/AlaRS common domain
thrS	SSF55681	Class II aaRS and biotin synthetases
thrS	SSF81271	TGS-like
thyA	SSF55831	Thymidylate synthase/dCMP hydroxymethylase
tiaE	SSF51735	NAD(P)-binding Rossmann-fold domains
tiaE	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
tig	SSF102735	Trigger factor ribosome-binding domain
tig	SSF109998	Triger factor/SurA peptide-binding domain-like
tig	SSF54534	FKBP-like
tilS	SSF52402	Adenine nucleotide alpha hydrolases-like
tilS	SSF56037	PheT/TilS domain
tilS	SSF82829	MesJ substrate recognition domain-like
tktA	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
tktA	SSF52922	TK C-terminal domain-like
tktB	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
tktB	SSF52922	TK C-terminal domain-like
tldD	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
tmk	SSF52540	P-loop containing nucleoside triphosphate hydrolases
tnaA	SSF53383	PLP-dependent transferases
tolA	SSF74653	TolA/TonB C-terminal domain
tolB	SSF52964	TolB, N-terminal domain
tolB	SSF69304	Tricorn protease N-terminal domain
tolC	SSF56954	Outer membrane efflux proteins (OEP)
tonB	SSF74653	TolA/TonB C-terminal domain
topA	SSF56712	Prokaryotic type I DNA topoisomerase
topA	SSF57783	Zinc beta-ribbon
topB	SSF56712	Prokaryotic type I DNA topoisomerase
torA	SSF50692	ADC-like
torA	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
torC	SSF48695	Multiheme cytochromes
torD	SSF89155	TorD-like
torR	SSF52172	CheY-like
torS	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
torS	SSF47384	Homodimeric domain of signal transducing histidine kinase
torS	SSF52172	CheY-like
torS	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
torT	SSF53822	Periplasmic binding protein-like I
torY	SSF48695	Multiheme cytochromes
torZ	SSF50692	ADC-like
torZ	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
tpiA	SSF51351	Triosephosphate isomerase (TIM)
tpx	SSF52833	Thioredoxin-like
treA	SSF48208	Six-hairpin glycosidases
treB	SSF55604	Glucose permease domain IIB
treC	SSF51011	Glycosyl hydrolase domain
treC	SSF51445	(Trans)glycosidases
treF	SSF48208	Six-hairpin glycosidases
treR	SSF47413	lambda repressor-like DNA-binding domains
treR	SSF53822	Periplasmic binding protein-like I
trg	SSF47170	Aspartate receptor, ligand-binding domain
trg	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
trkA	SSF116726	TrkA C-terminal domain-like
trkA	SSF51735	NAD(P)-binding Rossmann-fold domains
trmA	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
trmC	SSF51905	FAD/NAD(P)-binding domain
trmD	SSF75217	alpha/beta knot
trmE	SSF116878	TrmE connector domain
trmE	SSF52540	P-loop containing nucleoside triphosphate hydrolases
trmH	SSF75217	alpha/beta knot
trmU	SSF52402	Adenine nucleotide alpha hydrolases-like
trpA	SSF51366	Ribulose-phoshate binding barrel
trpB	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
trpC	SSF51366	Ribulose-phoshate binding barrel
trpD	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
trpD	SSF52317	Class I glutamine amidotransferase-like
trpD	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
trpE	SSF56322	ADC synthase
trpR	SSF48295	TrpR-like
trpS	SSF52374	Nucleotidylyl transferase
truA	SSF55120	Pseudouridine synthase
truB	SSF55120	Pseudouridine synthase
truB	SSF88697	PUA domain-like
truD	SSF55120	Pseudouridine synthase
trxA	SSF52833	Thioredoxin-like
trxB	SSF51905	FAD/NAD(P)-binding domain
trxC	SSF52833	Thioredoxin-like
tsf	SSF46934	UBA-like
tsf	SSF54713	Elongation factor Ts (EF-Ts), dimerisation domain
tsgA	SSF103473	MFS general substrate transporter
tsr	SSF47170	Aspartate receptor, ligand-binding domain
tsr	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
tsx	SSF111364	Tsx-like channel
ttdB	SSF117457	FumA C-terminal domain-like
ttk	SSF46689	Homeodomain-like
ttk	SSF48498	Tetracyclin repressor-like, C-terminal domain
tufA	SSF50447	Translation proteins
tufA	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
tufA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
tufB	SSF50447	Translation proteins
tufB	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
tufB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
tus	SSF56596	Replication terminator protein (Tus)
tynA	SSF49998	Amine oxidase catalytic domain
tynA	SSF54416	Amine oxidase N-terminal region
tynA	SSF55383	Copper amine oxidase, domain N
tyrA	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
tyrA	SSF48600	Chorismate mutase II
tyrA	SSF51735	NAD(P)-binding Rossmann-fold domains
tyrB	SSF53383	PLP-dependent transferases
tyrR	SSF46689	Homeodomain-like
tyrR	SSF52540	P-loop containing nucleoside triphosphate hydrolases
tyrR	SSF55021	ACT-like
tyrR	SSF55785	PYP-like sensor domain (PAS domain)
tyrS	SSF52374	Nucleotidylyl transferase
tyrS	SSF55174	Alpha-L RNA-binding motif
ubiB	SSF56112	Protein kinase-like (PK-like)
ubiC	SSF64288	Chorismate lyase-like
ubiD	SSF143968	UbiD C-terminal domain-like
ubiD	SSF50475	FMN-binding split barrel
ubiE	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
ubiF	SSF51905	FAD/NAD(P)-binding domain
ubiG	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
ubiH	SSF51905	FAD/NAD(P)-binding domain
ubiX	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
ucpA	SSF51735	NAD(P)-binding Rossmann-fold domains
udk	SSF52540	P-loop containing nucleoside triphosphate hydrolases
udp	SSF53167	Purine and uridine phosphorylases
ugd	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
ugd	SSF51735	NAD(P)-binding Rossmann-fold domains
ugd	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
ugpA	SSF161098	MetI-like
ugpB	SSF53850	Periplasmic binding protein-like II
ugpC	SSF50331	MOP-like
ugpC	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ugpE	SSF161098	MetI-like
ugpQ	SSF51695	PLC-like phosphodiesterases
uhpA	SSF46894	C-terminal effector domain of the bipartite response regulators
uhpA	SSF52172	CheY-like
uhpB	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
uhpC	SSF103473	MFS general substrate transporter
uhpT	SSF103473	MFS general substrate transporter
uidA	SSF49303	beta-Galactosidase/glucuronidase domain
uidA	SSF49785	Galactose-binding domain-like
uidA	SSF51445	(Trans)glycosidases
uidB	SSF103473	MFS general substrate transporter
uidR	SSF46689	Homeodomain-like
uidR	SSF48498	Tetracyclin repressor-like, C-terminal domain
ulaB	SSF52794	PTS system IIB component-like
ulaC	SSF55804	Phoshotransferase/anion transport protein
ulaD	SSF51366	Ribulose-phoshate binding barrel
ulaE	SSF51658	Xylose isomerase-like
ulaF	SSF53639	AraD/HMP-PK domain-like
ulaG	SSF56281	Metallo-hydrolase/oxidoreductase
ulaR	SSF100950	NagB/RpiA/CoA transferase-like
ulaR	SSF46785	"Winged helix" DNA-binding domain
umuC	SSF100879	Lesion bypass DNA polymerase (Y-family), little finger domain
umuC	SSF56672	DNA/RNA polymerases
umuD	SSF51306	LexA/Signal peptidase
ung	SSF52141	Uracil-DNA glycosylase-like
upp	SSF53271	PRTase-like
usg	SSF51735	NAD(P)-binding Rossmann-fold domains
usg	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
ushA	SSF55816	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
ushA	SSF56300	Metallo-dependent phosphatases
uspA	SSF52402	Adenine nucleotide alpha hydrolases-like
uspE	SSF52402	Adenine nucleotide alpha hydrolases-like
uspF	SSF52402	Adenine nucleotide alpha hydrolases-like
uspG	SSF52402	Adenine nucleotide alpha hydrolases-like
uup	SSF52540	P-loop containing nucleoside triphosphate hydrolases
uvrA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
uvrB	SSF46600	C-terminal UvrC-binding domain of UvrB
uvrB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
uvrC	SSF46600	C-terminal UvrC-binding domain of UvrB
uvrC	SSF47781	RuvA domain 2-like
uvrC	SSF82771	GIY-YIG endonuclease
uvrD	SSF52540	P-loop containing nucleoside triphosphate hydrolases
uvrY	SSF46894	C-terminal effector domain of the bipartite response regulators
uvrY	SSF52172	CheY-like
uxaB	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
uxaB	SSF51735	NAD(P)-binding Rossmann-fold domains
uxaC	SSF51556	Metallo-dependent hydrolases
uxuA	SSF51658	Xylose isomerase-like
uxuB	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
uxuB	SSF51735	NAD(P)-binding Rossmann-fold domains
uxuR	SSF46785	"Winged helix" DNA-binding domain
uxuR	SSF48008	GntR ligand-binding domain-like
valS	SSF46589	tRNA-binding arm
valS	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
valS	SSF50677	ValRS/IleRS/LeuRS editing domain
valS	SSF52374	Nucleotidylyl transferase
visC	SSF51905	FAD/NAD(P)-binding domain
vsr	SSF52980	Restriction endonuclease-like
wbbJ	SSF51161	Trimeric LpxA-like enzymes
wbbK	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
wcaA	SSF53448	Nucleotide-diphospho-sugar transferases
wcaB	SSF51161	Trimeric LpxA-like enzymes
wcaC	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
wcaE	SSF53448	Nucleotide-diphospho-sugar transferases
wcaF	SSF51161	Trimeric LpxA-like enzymes
wcaI	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
wcaL	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
wcaM	SSF51126	Pectin lyase-like
wrbA	SSF52218	Flavoproteins
wzb	SSF52788	Phosphotyrosine protein phosphatases I
wzc	SSF52540	P-loop containing nucleoside triphosphate hydrolases
wzzE	SSF160355	Bacterial polysaccharide co-polymerase-like
xapA	SSF53167	Purine and uridine phosphorylases
xapB	SSF103473	MFS general substrate transporter
xapR	SSF46785	"Winged helix" DNA-binding domain
xapR	SSF53850	Periplasmic binding protein-like II
xdhA	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
xdhA	SSF56003	Molybdenum cofactor-binding domain
xdhB	SSF55447	CO dehydrogenase flavoprotein C-terminal domain-like
xdhB	SSF56176	FAD-binding/transporter-associated domain-like
xdhC	SSF47741	CO dehydrogenase ISP C-domain like
xdhC	SSF54292	2Fe-2S ferredoxin-like
xdhD	SSF47741	CO dehydrogenase ISP C-domain like
xdhD	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
xdhD	SSF56003	Molybdenum cofactor-binding domain
xerC	SSF47823	lambda integrase-like, N-terminal domain
xerC	SSF56349	DNA breaking-rejoining enzymes
xerD	SSF47823	lambda integrase-like, N-terminal domain
xerD	SSF56349	DNA breaking-rejoining enzymes
xseB	SSF116842	XseB-like
xthA	SSF56219	DNase I-like
xylA	SSF51658	Xylose isomerase-like
xylB	SSF53067	Actin-like ATPase domain
xylE	SSF103473	MFS general substrate transporter
xylF	SSF53822	Periplasmic binding protein-like I
xylG	SSF52540	P-loop containing nucleoside triphosphate hydrolases
xylR	SSF46689	Homeodomain-like
xylR	SSF53822	Periplasmic binding protein-like I
yaaU	SSF103473	MFS general substrate transporter
yacF	SSF160950	YacF-like
yacG	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
yadB	SSF52374	Nucleotidylyl transferase
yadC	SSF49401	Bacterial adhesins
yadE	SSF88713	Glycoside hydrolase/deacetylase
yadG	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yadI	SSF53062	PTS system fructose IIA component-like
yadK	SSF49401	Bacterial adhesins
yadL	SSF49401	Bacterial adhesins
yadM	SSF49401	Bacterial adhesins
yadN	SSF49401	Bacterial adhesins
yadR	SSF89360	HesB-like domain
yaeB	SSF118196	YaeB-like
yaeF	SSF54001	Cysteine proteinases
yaeI	SSF56300	Metallo-dependent phosphatases
yaeJ	SSF75620	Release factor
yaeL	SSF50156	PDZ domain-like
yaeQ	SSF52980	Restriction endonuclease-like
yaeR	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
yafC	SSF46785	"Winged helix" DNA-binding domain
yafC	SSF53850	Periplasmic binding protein-like II
yafD	SSF56219	DNase I-like
yafE	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
yafJ	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
yafK	SSF141523	L,D-transpeptidase catalytic domain-like
yafL	SSF54001	Cysteine proteinases
yafM	SSF143422	Transposase IS200-like
yafN	SSF143120	YefM-like
yafP	SSF55729	Acyl-CoA N-acyltransferases (Nat)
yafQ	SSF143011	RelE-like
yafS	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
yafV	SSF56317	Carbon-nitrogen hydrolase
yafW	SSF143737	YeeU-like
yagA	SSF46689	Homeodomain-like
yagA	SSF53098	Ribonuclease H-like
yagB	SSF143737	YeeU-like
yagE	SSF51569	Aldolase
yagF	SSF143975	IlvD/EDD N-terminal domain-like
yagF	SSF52016	LeuD/IlvD-like
yagG	SSF103473	MFS general substrate transporter
yagH	SSF49899	Concanavalin A-like lectins/glucanases
yagH	SSF75005	Arabinanase/levansucrase/invertase
yagI	SSF46785	"Winged helix" DNA-binding domain
yagI	SSF55781	GAF domain-like
yagL	SSF53041	Resolvase-like
yagP	SSF53850	Periplasmic binding protein-like II
yagR	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
yagR	SSF56003	Molybdenum cofactor-binding domain
yagS	SSF55447	CO dehydrogenase flavoprotein C-terminal domain-like
yagS	SSF56176	FAD-binding/transporter-associated domain-like
yagT	SSF47741	CO dehydrogenase ISP C-domain like
yagT	SSF54292	2Fe-2S ferredoxin-like
yagV	SSF49354	PapD-like
yagX	SSF49464	Carboxypeptidase regulatory domain-like
yagY	SSF49354	PapD-like
yahA	SSF141868	EAL domain-like
yahA	SSF46894	C-terminal effector domain of the bipartite response regulators
yahB	SSF46785	"Winged helix" DNA-binding domain
yahB	SSF53850	Periplasmic binding protein-like II
yahD	SSF48403	Ankyrin repeat
yahF	SSF52210	Succinyl-CoA synthetase domains
yahI	SSF53633	Carbamate kinase-like
yahJ	SSF51338	Composite domain of metallo-dependent hydrolases
yahJ	SSF51556	Metallo-dependent hydrolases
yahK	SSF50129	GroES-like
yahK	SSF51735	NAD(P)-binding Rossmann-fold domains
yahO	SSF159871	YdgH-like
yaiC	SSF55073	Nucleotide cyclase
yaiE	SSF51182	RmlC-like cupins
yaiF	SSF51161	Trimeric LpxA-like enzymes
yaiP	SSF53448	Nucleotide-diphospho-sugar transferases
yaiS	SSF102588	LmbE-like
yaiT	SSF51126	Pectin lyase-like
yaiU	SSF103515	Autotransporter
yaiU	SSF51126	Pectin lyase-like
yaiV	SSF51206	cAMP-binding domain-like
yajL	SSF52317	Class I glutamine amidotransferase-like
yajO	SSF51430	NAD(P)-linked oxidoreductase
yajQ	SSF89963	YajQ-like
yajR	SSF103473	MFS general substrate transporter
ybaA	SSF54909	Dimeric alpha+beta barrel
ybaB	SSF82607	YbaB-like
ybaE	SSF53850	Periplasmic binding protein-like II
ybaK	SSF55826	YbaK/ProRS associated domain
ybaL	SSF51735	NAD(P)-binding Rossmann-fold domains
ybaO	SSF46785	"Winged helix" DNA-binding domain
ybaO	SSF54909	Dimeric alpha+beta barrel
ybaQ	SSF47413	lambda repressor-like DNA-binding domains
ybaS	SSF56601	beta-lactamase/transpeptidase-like
ybaV	SSF47781	RuvA domain 2-like
ybaW	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
ybaX	SSF52402	Adenine nucleotide alpha hydrolases-like
ybaZ	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
ybbA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ybbB	SSF52821	Rhodanese/Cell cycle control phosphatase
ybbJ	SSF141322	NfeD domain-like
ybbK	SSF117892	Band 7/SPFH domain
ybbL	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ybbN	SSF48452	TPR-like
ybbN	SSF52833	Thioredoxin-like
ybbO	SSF51735	NAD(P)-binding Rossmann-fold domains
ybbS	SSF46785	"Winged helix" DNA-binding domain
ybbS	SSF53850	Periplasmic binding protein-like II
ybcC	SSF52980	Restriction endonuclease-like
ybcF	SSF53633	Carbamate kinase-like
ybcJ	SSF55174	Alpha-L RNA-binding motif
ybcK	SSF53041	Resolvase-like
ybcL	SSF49777	PEBP-like
ybcM	SSF46689	Homeodomain-like
ybcN	SSF103370	NinB
ybcS	SSF53955	Lysozyme-like
ybcV	SSF160419	YdfO-like
ybcY	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
ybdA	SSF103473	MFS general substrate transporter
ybdB	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
ybdF	SSF142906	YjbR-like
ybdG	SSF50182	Sm-like ribonucleoproteins
ybdG	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
ybdH	SSF56796	Dehydroquinate synthase-like
ybdK	SSF55931	Glutamine synthetase/guanido kinase
ybdL	SSF53383	PLP-dependent transferases
ybdM	SSF110849	ParB/Sulfiredoxin
ybdN	SSF52402	Adenine nucleotide alpha hydrolases-like
ybdO	SSF46785	"Winged helix" DNA-binding domain
ybdO	SSF53850	Periplasmic binding protein-like II
ybdR	SSF50129	GroES-like
ybdR	SSF51735	NAD(P)-binding Rossmann-fold domains
ybdZ	SSF160582	MbtH-like
ybeA	SSF75217	alpha/beta knot
ybeB	SSF81301	Nucleotidyltransferase
ybeD	SSF117991	YbeD/HP0495-like
ybeF	SSF46785	"Winged helix" DNA-binding domain
ybeF	SSF53850	Periplasmic binding protein-like II
ybeH	SSF56317	Carbon-nitrogen hydrolase
ybeM	SSF56317	Carbon-nitrogen hydrolase
ybeQ	SSF81901	HCP-like
ybeT	SSF81901	HCP-like
ybeX	SSF54631	CBS-domain pair
ybeX	SSF56176	FAD-binding/transporter-associated domain-like
ybeY	SSF55486	Metalloproteases ("zincins"), catalytic domain
ybeZ	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ybfE	SSF47598	Ribbon-helix-helix
ybfF	SSF53474	alpha/beta-Hydrolases
ybgC	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
ybgD	SSF49401	Bacterial adhesins
ybgF	SSF48452	TPR-like
ybgH	SSF103473	MFS general substrate transporter
ybgI	SSF102705	NIF3 (NGG1p interacting factor 3)-like
ybgJ	SSF160467	PH0987 N-terminal domain-like
ybgJ	SSF50891	Cyclophilin-like
ybgK	SSF50891	Cyclophilin-like
ybgL	SSF88713	Glycoside hydrolase/deacetylase
ybgO	SSF49401	Bacterial adhesins
ybgP	SSF49354	PapD-like
ybgP	SSF49584	Periplasmic chaperone C-domain
ybgQ	SSF141729	FimD N-terminal domain-like
ybhA	SSF56784	HAD-like
ybhB	SSF49777	PEBP-like
ybhC	SSF51126	Pectin lyase-like
ybhD	SSF46785	"Winged helix" DNA-binding domain
ybhD	SSF53850	Periplasmic binding protein-like II
ybhE	SSF50974	Nitrous oxide reductase, N-terminal domain
ybhF	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ybhG	SSF111369	HlyD-like secretion proteins
ybhG	SSF56954	Outer membrane efflux proteins (OEP)
ybhH	SSF54506	Diaminopimelate epimerase-like
ybhJ	SSF52016	LeuD/IlvD-like
ybhJ	SSF53732	Aconitase iron-sulfur domain
ybhK	SSF142338	CofD-like
ybhO	SSF56024	Phospholipase D/nuclease
ybhP	SSF56219	DNase I-like
ybiA	SSF143990	YbiA-like
ybiB	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
ybiB	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
ybiC	SSF89733	L-sulfolactate dehydrogenase-like
ybiH	SSF46689	Homeodomain-like
ybiH	SSF48498	Tetracyclin repressor-like, C-terminal domain
ybiI	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
ybiJ	SSF159871	YdgH-like
ybiM	SSF159871	YdgH-like
ybiN	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
ybiO	SSF50182	Sm-like ribonucleoproteins
ybiO	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
ybiO	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
ybiP	SSF53649	Alkaline phosphatase-like
ybiS	SSF141523	L,D-transpeptidase catalytic domain-like
ybiT	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ybiU	SSF51197	Clavaminate synthase-like
ybiV	SSF56784	HAD-like
ybiW	SSF51998	PFL-like glycyl radical enzymes
ybiX	SSF51197	Clavaminate synthase-like
ybiY	SSF102114	Radical SAM enzymes
ybjD	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ybjG	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
ybjI	SSF56784	HAD-like
ybjJ	SSF103473	MFS general substrate transporter
ybjK	SSF46689	Homeodomain-like
ybjK	SSF48498	Tetracyclin repressor-like, C-terminal domain
ybjL	SSF116726	TrkA C-terminal domain-like
ybjQ	SSF117782	YbjQ-like
ybjR	SSF47090	PGBD-like
ybjR	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
ybjS	SSF51735	NAD(P)-binding Rossmann-fold domains
ybjT	SSF51735	NAD(P)-binding Rossmann-fold domains
ycaC	SSF52499	Isochorismatase-like hydrolases
ycaD	SSF103473	MFS general substrate transporter
ycaI	SSF56281	Metallo-hydrolase/oxidoreductase
ycaJ	SSF48019	post-AAA+ oligomerization domain-like
ycaJ	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ycaK	SSF52218	Flavoproteins
ycaN	SSF46785	"Winged helix" DNA-binding domain
ycaN	SSF53850	Periplasmic binding protein-like II
ycaR	SSF158997	Trm112p-like
ycbB	SSF141523	L,D-transpeptidase catalytic domain-like
ycbB	SSF47090	PGBD-like
ycbF	SSF49354	PapD-like
ycbF	SSF49584	Periplasmic chaperone C-domain
ycbJ	SSF56112	Protein kinase-like (PK-like)
ycbK	SSF55166	Hedgehog/DD-peptidase
ycbL	SSF56281	Metallo-hydrolase/oxidoreductase
ycbQ	SSF49401	Bacterial adhesins
ycbR	SSF49354	PapD-like
ycbR	SSF49584	Periplasmic chaperone C-domain
ycbS	SSF141729	FimD N-terminal domain-like
ycbT	SSF49401	Bacterial adhesins
ycbU	SSF49401	Bacterial adhesins
ycbV	SSF49401	Bacterial adhesins
ycbX	SSF141673	MOSC N-terminal domain-like
ycbX	SSF50800	PK beta-barrel domain-like
ycbX	SSF54292	2Fe-2S ferredoxin-like
ycbY	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
ycbZ	SSF54211	Ribosomal protein S5 domain 2-like
yccC	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yccK	SSF69721	DsrC, the gamma subunit of dissimilatory sulfite reductase
yccM	SSF54862	4Fe-4S ferredoxins
yccR	SSF159894	YgaC/TfoX-N like
yccU	SSF51735	NAD(P)-binding Rossmann-fold domains
yccV	SSF141255	YccV-like
yccW	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
yccW	SSF88697	PUA domain-like
yccX	SSF54975	Acylphosphatase/BLUF domain-like
ycdB	SSF54909	Dimeric alpha+beta barrel
ycdC	SSF46689	Homeodomain-like
ycdC	SSF48498	Tetracyclin repressor-like, C-terminal domain
ycdH	SSF50475	FMN-binding split barrel
ycdI	SSF55469	FMN-dependent nitroreductase-like
ycdK	SSF55298	YjgF-like
ycdL	SSF52499	Isochorismatase-like hydrolases
ycdM	SSF51679	Bacterial luciferase-like
ycdO	SSF49503	Cupredoxins
ycdQ	SSF53448	Nucleotide-diphospho-sugar transferases
ycdR	SSF88713	Glycoside hydrolase/deacetylase
ycdS	SSF48452	TPR-like
ycdT	SSF55073	Nucleotide cyclase
ycdW	SSF51735	NAD(P)-binding Rossmann-fold domains
ycdX	SSF89550	PHP domain-like
ycdY	SSF89155	TorD-like
yceA	SSF52821	Rhodanese/Cell cycle control phosphatase
yceF	SSF52972	ITPase-like
yceH	SSF46785	"Winged helix" DNA-binding domain
yceI	SSF101874	YceI-like
yceJ	SSF81342	Transmembrane di-heme cytochromes
ycfD	SSF51197	Clavaminate synthase-like
ycfH	SSF51556	Metallo-dependent hydrolases
ycfN	SSF56112	Protein kinase-like (PK-like)
ycfP	SSF53474	alpha/beta-Hydrolases
ycfQ	SSF46689	Homeodomain-like
ycfQ	SSF48498	Tetracyclin repressor-like, C-terminal domain
ycfR	SSF159871	YdgH-like
ycfS	SSF141523	L,D-transpeptidase catalytic domain-like
ycfX	SSF53067	Actin-like ATPase domain
ycgE	SSF46955	Putative DNA-binding domain
ycgF	SSF141868	EAL domain-like
ycgF	SSF54975	Acylphosphatase/BLUF domain-like
ycgG	SSF141868	EAL domain-like
ycgI	SSF103515	Autotransporter
ycgL	SSF160191	YcgL-like
ycgM	SSF56529	FAH
ycgV	SSF103515	Autotransporter
ycgV	SSF51126	Pectin lyase-like
ycgX	SSF160419	YdfO-like
ychF	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ychF	SSF81271	TGS-like
ychJ	SSF103642	Sec-C motif
ychJ	SSF54427	NTF2-like
ychM	SSF52091	SpoIIaa-like
ychN	SSF75169	DsrEFH-like
yciA	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
yciE	SSF47240	Ferritin-like
yciF	SSF47240	Ferritin-like
yciH	SSF55159	eIF1-like
yciI	SSF54909	Dimeric alpha+beta barrel
yciK	SSF51735	NAD(P)-binding Rossmann-fold domains
yciM	SSF48452	TPR-like
yciO	SSF55821	YrdC/RibB
yciT	SSF100950	NagB/RpiA/CoA transferase-like
yciT	SSF46785	"Winged helix" DNA-binding domain
yciU	SSF102816	Putative dsDNA mimic
yciV	SSF89550	PHP domain-like
yciW	SSF69118	AhpD-like
ycjD	SSF52980	Restriction endonuclease-like
ycjG	SSF51604	Enolase C-terminal domain-like
ycjG	SSF54826	Enolase N-terminal domain-like
ycjM	SSF51445	(Trans)glycosidases
ycjN	SSF53850	Periplasmic binding protein-like II
ycjO	SSF161098	MetI-like
ycjP	SSF161098	MetI-like
ycjQ	SSF50129	GroES-like
ycjQ	SSF51735	NAD(P)-binding Rossmann-fold domains
ycjR	SSF51658	Xylose isomerase-like
ycjS	SSF51735	NAD(P)-binding Rossmann-fold domains
ycjS	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
ycjT	SSF48208	Six-hairpin glycosidases
ycjT	SSF74650	Galactose mutarotase-like
ycjU	SSF56784	HAD-like
ycjV	SSF50331	MOP-like
ycjV	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ycjW	SSF47413	lambda repressor-like DNA-binding domains
ycjW	SSF53822	Periplasmic binding protein-like I
ycjY	SSF53474	alpha/beta-Hydrolases
ycjZ	SSF46785	"Winged helix" DNA-binding domain
ycjZ	SSF53850	Periplasmic binding protein-like II
ydaG	SSF46934	UBA-like
ydaL	SSF160443	SMR domain-like
ydaM	SSF55073	Nucleotide cyclase
ydaM	SSF55785	PYP-like sensor domain (PAS domain)
ydaN	SSF143865	CorA soluble domain-like
ydaN	SSF144083	Magnesium transport protein CorA, transmembrane region
ydaO	SSF52402	Adenine nucleotide alpha hydrolases-like
ydaS	SSF47413	lambda repressor-like DNA-binding domains
ydaV	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ydaW	SSF46785	"Winged helix" DNA-binding domain
ydbC	SSF51430	NAD(P)-linked oxidoreductase
ydbK	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
ydbK	SSF52922	TK C-terminal domain-like
ydbK	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
ydbK	SSF54862	4Fe-4S ferredoxins
ydcE	SSF55331	Tautomerase/MIF
ydcI	SSF46785	"Winged helix" DNA-binding domain
ydcI	SSF53850	Periplasmic binding protein-like II
ydcK	SSF51161	Trimeric LpxA-like enzymes
ydcN	SSF47413	lambda repressor-like DNA-binding domains
ydcN	SSF51182	RmlC-like cupins
ydcQ	SSF143100	TTHA1013/TTHA0281-like
ydcQ	SSF47413	lambda repressor-like DNA-binding domains
ydcR	SSF46785	"Winged helix" DNA-binding domain
ydcR	SSF53383	PLP-dependent transferases
ydcS	SSF53850	Periplasmic binding protein-like II
ydcT	SSF50331	MOP-like
ydcT	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ydcU	SSF161098	MetI-like
ydcV	SSF161098	MetI-like
ydcW	SSF53720	ALDH-like
yddA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yddA	SSF90123	ABC transporter transmembrane region
yddB	SSF56935	Porins
yddE	SSF54506	Diaminopimelate epimerase-like
yddG	SSF103481	Multidrug resistance efflux transporter EmrE
yddH	SSF50475	FMN-binding split barrel
yddK	SSF52058	L domain-like
yddL	SSF56935	Porins
yddM	SSF47413	lambda repressor-like DNA-binding domains
yddV	SSF55073	Nucleotide cyclase
yddW	SSF51445	(Trans)glycosidases
ydeA	SSF103473	MFS general substrate transporter
ydeE	SSF103473	MFS general substrate transporter
ydeH	SSF55073	Nucleotide cyclase
ydeI	SSF101756	Hypothetical protein YgiW
ydeJ	SSF142433	CinA-like
ydeK	SSF51126	Pectin lyase-like
ydeM	SSF102114	Radical SAM enzymes
ydeN	SSF53649	Alkaline phosphatase-like
ydeO	SSF46689	Homeodomain-like
ydeP	SSF50692	ADC-like
ydeP	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
ydeQ	SSF49401	Bacterial adhesins
ydeR	SSF49401	Bacterial adhesins
ydeS	SSF49401	Bacterial adhesins
ydeV	SSF53067	Actin-like ATPase domain
ydeW	SSF100950	NagB/RpiA/CoA transferase-like
ydfG	SSF51735	NAD(P)-binding Rossmann-fold domains
ydfH	SSF46785	"Winged helix" DNA-binding domain
ydfH	SSF48008	GntR ligand-binding domain-like
ydfI	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
ydfI	SSF51735	NAD(P)-binding Rossmann-fold domains
ydfJ	SSF103473	MFS general substrate transporter
ydfO	SSF160419	YdfO-like
ydfQ	SSF53955	Lysozyme-like
ydfT	SSF57938	DnaJ/Hsp40 cysteine-rich domain
ydgD	SSF50494	Trypsin-like serine proteases
ydgH	SSF159871	YdgH-like
ydgJ	SSF51735	NAD(P)-binding Rossmann-fold domains
ydgR	SSF103473	MFS general substrate transporter
ydgT	SSF68989	Hemolysin expression modulating protein HHA
ydhA	SSF141488	YdhA-like
ydhB	SSF46785	"Winged helix" DNA-binding domain
ydhB	SSF53850	Periplasmic binding protein-like II
ydhC	SSF103473	MFS general substrate transporter
ydhD	SSF52833	Thioredoxin-like
ydhF	SSF51430	NAD(P)-linked oxidoreductase
ydhH	SSF53067	Actin-like ATPase domain
ydhJ	SSF111369	HlyD-like secretion proteins
ydhM	SSF46689	Homeodomain-like
ydhM	SSF48498	Tetracyclin repressor-like, C-terminal domain
ydhO	SSF54001	Cysteine proteinases
ydhP	SSF103473	MFS general substrate transporter
ydhQ	SSF51126	Pectin lyase-like
ydhR	SSF54909	Dimeric alpha+beta barrel
ydhS	SSF51905	FAD/NAD(P)-binding domain
ydhU	SSF81342	Transmembrane di-heme cytochromes
ydhV	SSF48310	Aldehyde ferredoxin oxidoreductase, C-terminal domains
ydhV	SSF56228	Aldehyde ferredoxin oxidoreductase, N-terminal domain
ydhX	SSF54862	4Fe-4S ferredoxins
ydhY	SSF54862	4Fe-4S ferredoxins
ydiB	SSF51735	NAD(P)-binding Rossmann-fold domains
ydiB	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
ydiD	SSF56801	Acetyl-CoA synthetase-like
ydiF	SSF100950	NagB/RpiA/CoA transferase-like
ydiI	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
ydiJ	SSF46548	alpha-helical ferredoxin
ydiJ	SSF55103	FAD-linked oxidases, C-terminal domain
ydiJ	SSF56176	FAD-binding/transporter-associated domain-like
ydiL	SSF47413	lambda repressor-like DNA-binding domains
ydiM	SSF103473	MFS general substrate transporter
ydiN	SSF103473	MFS general substrate transporter
ydiO	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
ydiO	SSF56645	Acyl-CoA dehydrogenase NM domain-like
ydiP	SSF46689	Homeodomain-like
ydiP	SSF51182	RmlC-like cupins
ydiQ	SSF52402	Adenine nucleotide alpha hydrolases-like
ydiR	SSF52402	Adenine nucleotide alpha hydrolases-like
ydiR	SSF52467	DHS-like NAD/FAD-binding domain
ydiS	SSF51905	FAD/NAD(P)-binding domain
ydiS	SSF54373	FAD-linked reductases, C-terminal domain
ydiT	SSF54862	4Fe-4S ferredoxins
ydiV	SSF141868	EAL domain-like
ydjA	SSF55469	FMN-dependent nitroreductase-like
ydjE	SSF103473	MFS general substrate transporter
ydjF	SSF100950	NagB/RpiA/CoA transferase-like
ydjF	SSF46785	"Winged helix" DNA-binding domain
ydjG	SSF51430	NAD(P)-linked oxidoreductase
ydjH	SSF53613	Ribokinase-like
ydjI	SSF51569	Aldolase
ydjJ	SSF50129	GroES-like
ydjJ	SSF51735	NAD(P)-binding Rossmann-fold domains
ydjK	SSF103473	MFS general substrate transporter
ydjL	SSF50129	GroES-like
ydjL	SSF51735	NAD(P)-binding Rossmann-fold domains
ydjN	SSF118215	Proton glutamate symport protein
ydjQ	SSF82771	GIY-YIG endonuclease
ydjR	SSF51182	RmlC-like cupins
yeaA	SSF51316	Mss4-like
yeaB	SSF55811	Nudix
yeaD	SSF74650	Galactose mutarotase-like
yeaE	SSF51430	NAD(P)-linked oxidoreductase
yeaG	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yeaI	SSF55073	Nucleotide cyclase
yeaJ	SSF55073	Nucleotide cyclase
yeaK	SSF55826	YbaK/ProRS associated domain
yeaM	SSF46689	Homeodomain-like
yeaM	SSF51182	RmlC-like cupins
yeaN	SSF103473	MFS general substrate transporter
yeaP	SSF55073	Nucleotide cyclase
yeaP	SSF55781	GAF domain-like
yeaR	SSF51197	Clavaminate synthase-like
yeaT	SSF46785	"Winged helix" DNA-binding domain
yeaT	SSF53850	Periplasmic binding protein-like II
yeaU	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
yeaW	SSF50022	ISP domain
yeaW	SSF55961	Bet v1-like
yeaX	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
yeaX	SSF54292	2Fe-2S ferredoxin-like
yeaX	SSF63380	Riboflavin synthase domain-like
yeaZ	SSF53067	Actin-like ATPase domain
yebA	SSF51261	Duplicated hybrid motif
yebA	SSF54106	LysM domain
yebB	SSF54001	Cysteine proteinases
yebC	SSF75625	YebC-like
yebE	SSF158682	TerB-like
yebK	SSF46689	Homeodomain-like
yebK	SSF53697	SIS domain
yebQ	SSF103473	MFS general substrate transporter
yebR	SSF55781	GAF domain-like
yebU	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
yecA	SSF101327	YgfB-like
yecA	SSF103642	Sec-C motif
yecC	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yecD	SSF52499	Isochorismatase-like hydrolases
yecE	SSF117396	TM1631-like
yecG	SSF52402	Adenine nucleotide alpha hydrolases-like
yecI	SSF47240	Ferritin-like
yecM	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
yecN	SSF161084	MAPEG domain-like
yecO	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
yecP	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
yecS	SSF161098	MetI-like
yedA	SSF103481	Multidrug resistance efflux transporter EmrE
yedF	SSF64307	SirA-like
yedJ	SSF109604	HD-domain/PDEase-like
yedK	SSF143081	BB1717-like
yedL	SSF55729	Acyl-CoA N-acyltransferases (Nat)
yedO	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
yedP	SSF56784	HAD-like
yedQ	SSF55073	Nucleotide cyclase
yedV	SSF47384	Homodimeric domain of signal transducing histidine kinase
yedV	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
yedW	SSF46894	C-terminal effector domain of the bipartite response regulators
yedW	SSF52172	CheY-like
yedX	SSF49472	Transthyretin (synonym: prealbumin)
yedY	SSF56524	Oxidoreductase molybdopterin-binding domain
yeeD	SSF64307	SirA-like
yeeI	SSF55486	Metalloproteases ("zincins"), catalytic domain
yeeJ	SSF49373	Invasin/intimin cell-adhesion fragments
yeeN	SSF75625	YebC-like
yeeS	SSF102712	JAB1/MPN domain
yeeU	SSF143737	YeeU-like
yeeY	SSF46785	"Winged helix" DNA-binding domain
yeeY	SSF53850	Periplasmic binding protein-like II
yeeZ	SSF51735	NAD(P)-binding Rossmann-fold domains
yefM	SSF143120	YefM-like
yegD	SSF53067	Actin-like ATPase domain
yegE	SSF141868	EAL domain-like
yegE	SSF55073	Nucleotide cyclase
yegE	SSF55785	PYP-like sensor domain (PAS domain)
yegH	SSF54631	CBS-domain pair
yegH	SSF56176	FAD-binding/transporter-associated domain-like
yegI	SSF56112	Protein kinase-like (PK-like)
yegK	SSF81606	PP2C-like
yegL	SSF53300	vWA-like
yegP	SSF160113	YegP-like
yegS	SSF111331	NAD kinase/diacylglycerol kinase-like
yegT	SSF103473	MFS general substrate transporter
yegU	SSF101478	ADP-ribosylglycohydrolase
yegV	SSF53613	Ribokinase-like
yegW	SSF46785	"Winged helix" DNA-binding domain
yegW	SSF64288	Chorismate lyase-like
yegX	SSF51445	(Trans)glycosidases
yehA	SSF49401	Bacterial adhesins
yehB	SSF141729	FimD N-terminal domain-like
yehC	SSF49354	PapD-like
yehC	SSF49584	Periplasmic chaperone C-domain
yehD	SSF49401	Bacterial adhesins
yehL	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yehP	SSF53300	vWA-like
yehR	SSF160704	YehR-like
yehT	SSF52172	CheY-like
yehU	SSF55781	GAF domain-like
yehU	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
yehW	SSF161098	MetI-like
yehX	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yehX	SSF54631	CBS-domain pair
yehY	SSF161098	MetI-like
yehZ	SSF53850	Periplasmic binding protein-like II
yeiA	SSF51395	FMN-linked oxidoreductases
yeiA	SSF54862	4Fe-4S ferredoxins
yeiC	SSF53613	Ribokinase-like
yeiE	SSF46785	"Winged helix" DNA-binding domain
yeiE	SSF53850	Periplasmic binding protein-like II
yeiG	SSF53474	alpha/beta-Hydrolases
yeiI	SSF46785	"Winged helix" DNA-binding domain
yeiI	SSF53613	Ribokinase-like
yeiL	SSF51206	cAMP-binding domain-like
yeiN	SSF110581	Indigoidine synthase A-like
yeiP	SSF50104	Translation proteins SH3-like domain
yeiP	SSF50249	Nucleic acid-binding proteins
yeiQ	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
yeiQ	SSF51735	NAD(P)-binding Rossmann-fold domains
yeiR	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yeiT	SSF46548	alpha-helical ferredoxin
yeiT	SSF51971	Nucleotide-binding domain
yeiU	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
yejA	SSF53850	Periplasmic binding protein-like II
yejB	SSF161098	MetI-like
yejE	SSF161098	MetI-like
yejF	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yejH	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yejH	SSF57829	Zn-binding ribosomal proteins
yejL	SSF158651	YejL-like
yejM	SSF53649	Alkaline phosphatase-like
yejO	SSF103515	Autotransporter
yejO	SSF51126	Pectin lyase-like
yfaE	SSF54292	2Fe-2S ferredoxin-like
yfaL	SSF103515	Autotransporter
yfaL	SSF51126	Pectin lyase-like
yfaO	SSF55811	Nudix
yfaQ	SSF56601	beta-lactamase/transpeptidase-like
yfaU	SSF51621	Phosphoenolpyruvate/pyruvate domain
yfaV	SSF103473	MFS general substrate transporter
yfaW	SSF51604	Enolase C-terminal domain-like
yfaW	SSF54826	Enolase N-terminal domain-like
yfaX	SSF46785	"Winged helix" DNA-binding domain
yfaX	SSF55781	GAF domain-like
yfaY	SSF142433	CinA-like
yfaY	SSF53218	Molybdenum cofactor biosynthesis proteins
yfaZ	SSF56925	OMPA-like
yfbB	SSF53474	alpha/beta-Hydrolases
yfbE	SSF53383	PLP-dependent transferases
yfbF	SSF53448	Nucleotide-diphospho-sugar transferases
yfbG	SSF50486	FMT C-terminal domain-like
yfbG	SSF51735	NAD(P)-binding Rossmann-fold domains
yfbG	SSF53328	Formyltransferase
yfbH	SSF88713	Glycoside hydrolase/deacetylase
yfbJ	SSF103481	Multidrug resistance efflux transporter EmrE
yfbK	SSF53300	vWA-like
yfbL	SSF53187	Zn-dependent exopeptidases
yfbM	SSF111069	Hypothetical protein yfbM
yfbP	SSF48452	TPR-like
yfbQ	SSF53383	PLP-dependent transferases
yfbR	SSF109604	HD-domain/PDEase-like
yfbS	SSF116726	TrkA C-terminal domain-like
yfbT	SSF56784	HAD-like
yfbU	SSF116960	YfbU-like
yfbW	SSF103481	Multidrug resistance efflux transporter EmrE
yfcD	SSF55811	Nudix
yfcE	SSF56300	Metallo-dependent phosphatases
yfcF	SSF47616	GST C-terminal domain-like
yfcF	SSF52833	Thioredoxin-like
yfcG	SSF47616	GST C-terminal domain-like
yfcG	SSF52833	Thioredoxin-like
yfcH	SSF51735	NAD(P)-binding Rossmann-fold domains
yfcJ	SSF103473	MFS general substrate transporter
yfcN	SSF160443	SMR domain-like
yfcP	SSF49401	Bacterial adhesins
yfcQ	SSF49401	Bacterial adhesins
yfcR	SSF49401	Bacterial adhesins
yfcS	SSF49354	PapD-like
yfcS	SSF49584	Periplasmic chaperone C-domain
yfcU	SSF141729	FimD N-terminal domain-like
yfcV	SSF49401	Bacterial adhesins
yfcX	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
yfcX	SSF51735	NAD(P)-binding Rossmann-fold domains
yfcX	SSF52096	ClpP/crotonase
yfcY	SSF53901	Thiolase-like
yfdE	SSF89796	CoA-transferase family III (CaiB/BaiF)
yfdH	SSF53448	Nucleotide-diphospho-sugar transferases
yfdR	SSF109604	HD-domain/PDEase-like
yfdZ	SSF53383	PLP-dependent transferases
yfeA	SSF141868	EAL domain-like
yfeA	SSF55073	Nucleotide cyclase
yfeC	SSF46955	Putative DNA-binding domain
yfeD	SSF46955	Putative DNA-binding domain
yfeG	SSF46689	Homeodomain-like
yfeN	SSF111364	Tsx-like channel
yfeO	SSF81340	Clc chloride channel
yfeR	SSF46785	"Winged helix" DNA-binding domain
yfeR	SSF53850	Periplasmic binding protein-like II
yfeS	SSF142921	WGR domain-like
yfeT	SSF46689	Homeodomain-like
yfeT	SSF53697	SIS domain
yfeU	SSF53697	SIS domain
yfeW	SSF56601	beta-lactamase/transpeptidase-like
yfeX	SSF54909	Dimeric alpha+beta barrel
yffB	SSF52833	Thioredoxin-like
yffH	SSF55811	Nudix
yffI	SSF143414	CcmK-like
yfgA	SSF47413	lambda repressor-like DNA-binding domains
yfgB	SSF102114	Radical SAM enzymes
yfgC	SSF48452	TPR-like
yfgD	SSF52833	Thioredoxin-like
yfgF	SSF141868	EAL domain-like
yfgJ	SSF161187	YfgJ-like
yfgL	SSF50998	Quinoprotein alcohol dehydrogenase-like
yfgM	SSF48452	TPR-like
yfhA	SSF46689	Homeodomain-like
yfhA	SSF52172	CheY-like
yfhA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yfhB	SSF56784	HAD-like
yfhD	SSF53850	Periplasmic binding protein-like II
yfhD	SSF53955	Lysozyme-like
yfhH	SSF46689	Homeodomain-like
yfhH	SSF53697	SIS domain
yfhJ	SSF140319	IscX-like
yfhK	SSF47384	Homodimeric domain of signal transducing histidine kinase
yfhK	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
yfhL	SSF54862	4Fe-4S ferredoxins
yfhM	SSF48239	Terpenoid cyclases/Protein prenyltransferases
yfhQ	SSF75217	alpha/beta knot
yfhR	SSF53474	alpha/beta-Hydrolases
yfiA	SSF69754	Ribosome binding protein Y (YfiA homologue)
yfiB	SSF103088	OmpA-like
yfiC	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
yfiD	SSF51998	PFL-like glycyl radical enzymes
yfiE	SSF46785	"Winged helix" DNA-binding domain
yfiE	SSF53850	Periplasmic binding protein-like II
yfiF	SSF55315	L30e-like
yfiF	SSF75217	alpha/beta knot
yfiH	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
yfiN	SSF55073	Nucleotide cyclase
yfiO	SSF48452	TPR-like
yfiQ	SSF51735	NAD(P)-binding Rossmann-fold domains
yfiQ	SSF52210	Succinyl-CoA synthetase domains
yfiQ	SSF55729	Acyl-CoA N-acyltransferases (Nat)
yfiQ	SSF56059	Glutathione synthetase ATP-binding domain-like
yfjB	SSF111331	NAD kinase/diacylglycerol kinase-like
yfjD	SSF54631	CBS-domain pair
yfjD	SSF56176	FAD-binding/transporter-associated domain-like
yfjF	SSF54285	MoaD/ThiS
yfjG	SSF55961	Bet v1-like
yfjK	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yfjP	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yfjU	SSF52833	Thioredoxin-like
yfjZ	SSF143737	YeeU-like
ygaC	SSF159894	YgaC/TfoX-N like
ygaD	SSF142433	CinA-like
ygaF	SSF51905	FAD/NAD(P)-binding domain
ygaP	SSF52821	Rhodanese/Cell cycle control phosphatase
ygaR	SSF51445	(Trans)glycosidases
ygaT	SSF51197	Clavaminate synthase-like
ygaU	SSF54106	LysM domain
ygaV	SSF46785	"Winged helix" DNA-binding domain
ygaX	SSF103473	MFS general substrate transporter
ygbI	SSF100950	NagB/RpiA/CoA transferase-like
ygbI	SSF46785	"Winged helix" DNA-binding domain
ygbJ	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
ygbJ	SSF51735	NAD(P)-binding Rossmann-fold domains
ygbK	SSF142764	YgbK-like
ygbL	SSF53639	AraD/HMP-PK domain-like
ygbM	SSF51658	Xylose isomerase-like
ygcB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ygcE	SSF53067	Actin-like ATPase domain
ygcF	SSF102114	Radical SAM enzymes
ygcH	SSF117987	CRISPR-associated protein
ygcM	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
ygcN	SSF51905	FAD/NAD(P)-binding domain
ygcN	SSF54373	FAD-linked reductases, C-terminal domain
ygcO	SSF54862	4Fe-4S ferredoxins
ygcP	SSF110391	GlpP-like
ygcQ	SSF52402	Adenine nucleotide alpha hydrolases-like
ygcQ	SSF52467	DHS-like NAD/FAD-binding domain
ygcR	SSF52402	Adenine nucleotide alpha hydrolases-like
ygcS	SSF103473	MFS general substrate transporter
ygcU	SSF55103	FAD-linked oxidases, C-terminal domain
ygcU	SSF56176	FAD-binding/transporter-associated domain-like
ygcW	SSF51735	NAD(P)-binding Rossmann-fold domains
ygdE	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
ygdH	SSF102405	MCP/YpsA-like
ygdI	SSF50182	Sm-like ribonucleoproteins
ygdK	SSF82649	SufE/NifU
ygdL	SSF69572	Activating enzymes of the ubiquitin-like proteins
ygdR	SSF50182	Sm-like ribonucleoproteins
ygeA	SSF53681	Aspartate/glutamate racemase
ygeD	SSF103473	MFS general substrate transporter
ygeG	SSF48452	TPR-like
ygeH	SSF46894	C-terminal effector domain of the bipartite response regulators
ygeH	SSF48452	TPR-like
ygeK	SSF46894	C-terminal effector domain of the bipartite response regulators
ygeK	SSF52172	CheY-like
ygeQ	SSF48208	Six-hairpin glycosidases
ygeR	SSF51261	Duplicated hybrid motif
ygeV	SSF46689	Homeodomain-like
ygeV	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ygeV	SSF55785	PYP-like sensor domain (PAS domain)
ygeW	SSF53671	Aspartate/ornithine carbamoyltransferase
ygeX	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
ygeY	SSF53187	Zn-dependent exopeptidases
ygeY	SSF55031	Bacterial exopeptidase dimerisation domain
ygfA	SSF100950	NagB/RpiA/CoA transferase-like
ygfB	SSF101327	YgfB-like
ygfF	SSF51735	NAD(P)-binding Rossmann-fold domains
ygfG	SSF52096	ClpP/crotonase
ygfH	SSF100950	NagB/RpiA/CoA transferase-like
ygfI	SSF46785	"Winged helix" DNA-binding domain
ygfI	SSF53850	Periplasmic binding protein-like II
ygfJ	SSF53448	Nucleotide-diphospho-sugar transferases
ygfK	SSF46548	alpha-helical ferredoxin
ygfK	SSF51395	FMN-linked oxidoreductases
ygfK	SSF51971	Nucleotide-binding domain
ygfM	SSF55447	CO dehydrogenase flavoprotein C-terminal domain-like
ygfM	SSF56176	FAD-binding/transporter-associated domain-like
ygfS	SSF54862	4Fe-4S ferredoxins
ygfT	SSF51971	Nucleotide-binding domain
ygfT	SSF54862	4Fe-4S ferredoxins
ygfY	SSF109910	YgfY-like
ygfZ	SSF101790	Aminomethyltransferase beta-barrel domain
ygfZ	SSF103025	Folate-binding domain
yggC	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yggD	SSF158668	MtlR-like
yggF	SSF56655	Carbohydrate phosphatase
yggH	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
yggJ	SSF75217	alpha/beta knot
yggJ	SSF88697	PUA domain-like
yggP	SSF50129	GroES-like
yggP	SSF51735	NAD(P)-binding Rossmann-fold domains
yggR	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yggS	SSF51419	PLP-binding barrel
yggU	SSF69786	YggU-like
yggV	SSF52972	ITPase-like
yggW	SSF102114	Radical SAM enzymes
yggX	SSF111148	YggX-like
yghA	SSF51735	NAD(P)-binding Rossmann-fold domains
yghD	SSF103054	General secretion pathway protein M, EpsM
yghF	SSF50156	PDZ domain-like
yghO	SSF55729	Acyl-CoA N-acyltransferases (Nat)
yghR	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yghS	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yghT	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yghU	SSF47616	GST C-terminal domain-like
yghU	SSF52833	Thioredoxin-like
yghZ	SSF51430	NAD(P)-linked oxidoreductase
ygiC	SSF52440	PreATP-grasp domain
ygiC	SSF56059	Glutathione synthetase ATP-binding domain-like
ygiF	SSF55154	CYTH-like phosphatases
ygiL	SSF49401	Bacterial adhesins
ygiN	SSF54909	Dimeric alpha+beta barrel
ygiP	SSF46785	"Winged helix" DNA-binding domain
ygiP	SSF53850	Periplasmic binding protein-like II
ygiQ	SSF102114	Radical SAM enzymes
ygiS	SSF53850	Periplasmic binding protein-like II
ygiT	SSF47413	lambda repressor-like DNA-binding domains
ygiV	SSF55136	Probable bacterial effector-binding domain
ygiW	SSF101756	Hypothetical protein YgiW
ygjD	SSF53067	Actin-like ATPase domain
ygjF	SSF52141	Uracil-DNA glycosylase-like
ygjG	SSF53383	PLP-dependent transferases
ygjH	SSF50249	Nucleic acid-binding proteins
ygjK	SSF48208	Six-hairpin glycosidases
ygjM	SSF47413	lambda repressor-like DNA-binding domains
ygjO	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
ygjR	SSF51735	NAD(P)-binding Rossmann-fold domains
ygjR	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
yhaC	SSF141571	Pentapeptide repeat-like
yhaJ	SSF46785	"Winged helix" DNA-binding domain
yhaJ	SSF53850	Periplasmic binding protein-like II
yhaK	SSF51182	RmlC-like cupins
yhbC	SSF74942	YhbC-like, C-terminal domain
yhbC	SSF75420	YhbC-like, N-terminal domain
yhbE	SSF103481	Multidrug resistance efflux transporter EmrE
yhbG	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yhbH	SSF69754	Ribosome binding protein Y (YfiA homologue)
yhbJ	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yhbO	SSF52317	Class I glutamine amidotransferase-like
yhbP	SSF50475	FMN-binding split barrel
yhbQ	SSF82771	GIY-YIG endonuclease
yhbS	SSF55729	Acyl-CoA N-acyltransferases (Nat)
yhbT	SSF55718	SCP-like
yhbU	SSF51391	Thiamin phosphate synthase
yhbW	SSF51679	Bacterial luciferase-like
yhbX	SSF53649	Alkaline phosphatase-like
yhbY	SSF75471	YhbY-like
yhcA	SSF49354	PapD-like
yhcA	SSF49584	Periplasmic chaperone C-domain
yhcC	SSF102114	Radical SAM enzymes
yhcD	SSF141729	FimD N-terminal domain-like
yhcH	SSF51197	Clavaminate synthase-like
yhcM	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yhcN	SSF159871	YdgH-like
yhcO	SSF52038	Barstar-related
yhdA	SSF141868	EAL domain-like
yhdA	SSF55073	Nucleotide cyclase
yhdE	SSF52972	ITPase-like
yhdH	SSF50129	GroES-like
yhdH	SSF51735	NAD(P)-binding Rossmann-fold domains
yhdJ	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
yhdW	SSF53850	Periplasmic binding protein-like II
yhdX	SSF161098	MetI-like
yhdY	SSF161098	MetI-like
yhdZ	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yheL	SSF75169	DsrEFH-like
yheM	SSF75169	DsrEFH-like
yheN	SSF75169	DsrEFH-like
yheS	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yheT	SSF53474	alpha/beta-Hydrolases
yheU	SSF118001	YehU-like
yhfA	SSF82784	OsmC-like
yhfS	SSF53383	PLP-dependent transferases
yhfW	SSF53649	Alkaline phosphatase-like
yhfX	SSF51419	PLP-binding barrel
yhfY	SSF63520	PTS-regulatory domain, PRD
yhfZ	SSF53850	Periplasmic binding protein-like II
yhgF	SSF158832	Tex N-terminal region-like
yhgF	SSF47781	RuvA domain 2-like
yhgF	SSF50249	Nucleic acid-binding proteins
yhgF	SSF53098	Ribonuclease H-like
yhgG	SSF46785	"Winged helix" DNA-binding domain
yhhF	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
yhhK	SSF55729	Acyl-CoA N-acyltransferases (Nat)
yhhP	SSF64307	SirA-like
yhhS	SSF103473	MFS general substrate transporter
yhhW	SSF51182	RmlC-like cupins
yhhX	SSF51735	NAD(P)-binding Rossmann-fold domains
yhhX	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
yhhY	SSF55729	Acyl-CoA N-acyltransferases (Nat)
yhhZ	SSF141452	Hcp1-like
yhhZ	SSF54060	His-Me finger endonucleases
yhiF	SSF46894	C-terminal effector domain of the bipartite response regulators
yhiI	SSF111369	HlyD-like secretion proteins
yhiJ	SSF56300	Metallo-dependent phosphatases
yhiL	SSF56300	Metallo-dependent phosphatases
yhiN	SSF160996	HI0933 insert domain-like
yhiN	SSF51905	FAD/NAD(P)-binding domain
yhiP	SSF103473	MFS general substrate transporter
yhiQ	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
yhiR	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
yhiS	SSF141571	Pentapeptide repeat-like
yhjA	SSF46626	Cytochrome c
yhjB	SSF46894	C-terminal effector domain of the bipartite response regulators
yhjC	SSF46785	"Winged helix" DNA-binding domain
yhjC	SSF53850	Periplasmic binding protein-like II
yhjE	SSF103473	MFS general substrate transporter
yhjH	SSF141868	EAL domain-like
yhjJ	SSF63411	LuxS/MPP-like metallohydrolase
yhjK	SSF141868	EAL domain-like
yhjK	SSF55073	Nucleotide cyclase
yhjX	SSF103473	MFS general substrate transporter
yhjY	SSF103515	Autotransporter
yiaC	SSF55729	Acyl-CoA N-acyltransferases (Nat)
yiaD	SSF103088	OmpA-like
yiaG	SSF47413	lambda repressor-like DNA-binding domains
yiaI	SSF54862	4Fe-4S ferredoxins
yiaJ	SSF46785	"Winged helix" DNA-binding domain
yiaJ	SSF55781	GAF domain-like
yiaK	SSF89733	L-sulfolactate dehydrogenase-like
yiaL	SSF51197	Clavaminate synthase-like
yiaO	SSF53850	Periplasmic binding protein-like II
yiaU	SSF46785	"Winged helix" DNA-binding domain
yiaU	SSF53850	Periplasmic binding protein-like II
yiaV	SSF111369	HlyD-like secretion proteins
yiaY	SSF56796	Dehydroquinate synthase-like
yibA	SSF48371	ARM repeat
yibD	SSF53448	Nucleotide-diphospho-sugar transferases
yibF	SSF47616	GST C-terminal domain-like
yibF	SSF52833	Thioredoxin-like
yibG	SSF81901	HCP-like
yibH	SSF111369	HlyD-like secretion proteins
yibK	SSF75217	alpha/beta knot
yibN	SSF52821	Rhodanese/Cell cycle control phosphatase
yibQ	SSF88713	Glycoside hydrolase/deacetylase
yicI	SSF117125	Putative glucosidase YicI, C-terminal domain
yicI	SSF51011	Glycosyl hydrolase domain
yicI	SSF51445	(Trans)glycosidases
yicI	SSF74650	Galactose mutarotase-like
yicJ	SSF103473	MFS general substrate transporter
yicL	SSF103481	Multidrug resistance efflux transporter EmrE
yicM	SSF103473	MFS general substrate transporter
yicR	SSF47781	RuvA domain 2-like
yidA	SSF56784	HAD-like
yidB	SSF140804	YidB-like
yidE	SSF116726	TrkA C-terminal domain-like
yidJ	SSF53649	Alkaline phosphatase-like
yidL	SSF46689	Homeodomain-like
yidL	SSF51215	Regulatory protein AraC
yidP	SSF46785	"Winged helix" DNA-binding domain
yidP	SSF64288	Chorismate lyase-like
yidR	SSF82171	DPP6 N-terminal domain-like
yidZ	SSF46785	"Winged helix" DNA-binding domain
yidZ	SSF53850	Periplasmic binding protein-like II
yieF	SSF52218	Flavoproteins
yieH	SSF56784	HAD-like
yieK	SSF100950	NagB/RpiA/CoA transferase-like
yieL	SSF53474	alpha/beta-Hydrolases
yieL	SSF81296	E set domains
yieM	SSF53300	vWA-like
yieN	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yieP	SSF46785	"Winged helix" DNA-binding domain
yieP	SSF48008	GntR ligand-binding domain-like
yifB	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yifB	SSF54211	Ribosomal protein S5 domain 2-like
yigB	SSF56784	HAD-like
yigI	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
yigL	SSF56784	HAD-like
yigM	SSF103481	Multidrug resistance efflux transporter EmrE
yigP	SSF55718	SCP-like
yigZ	SSF54211	Ribosomal protein S5 domain 2-like
yigZ	SSF54980	EF-G C-terminal domain-like
yihA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yihE	SSF56112	Protein kinase-like (PK-like)
yihG	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
yihL	SSF46785	"Winged helix" DNA-binding domain
yihL	SSF64288	Chorismate lyase-like
yihM	SSF51658	Xylose isomerase-like
yihN	SSF103473	MFS general substrate transporter
yihO	SSF103473	MFS general substrate transporter
yihP	SSF103473	MFS general substrate transporter
yihQ	SSF51011	Glycosyl hydrolase domain
yihQ	SSF51445	(Trans)glycosidases
yihQ	SSF74650	Galactose mutarotase-like
yihR	SSF74650	Galactose mutarotase-like
yihS	SSF48208	Six-hairpin glycosidases
yihT	SSF51569	Aldolase
yihU	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
yihU	SSF51735	NAD(P)-binding Rossmann-fold domains
yihV	SSF53613	Ribokinase-like
yihW	SSF100950	NagB/RpiA/CoA transferase-like
yihW	SSF46785	"Winged helix" DNA-binding domain
yihX	SSF56784	HAD-like
yiiD	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
yiiD	SSF55729	Acyl-CoA N-acyltransferases (Nat)
yiiL	SSF54909	Dimeric alpha+beta barrel
yiiM	SSF50800	PK beta-barrel domain-like
yiiT	SSF52402	Adenine nucleotide alpha hydrolases-like
yiiX	SSF54001	Cysteine proteinases
yijE	SSF103481	Multidrug resistance efflux transporter EmrE
yijO	SSF46689	Homeodomain-like
yijP	SSF53649	Alkaline phosphatase-like
yjaB	SSF55729	Acyl-CoA N-acyltransferases (Nat)
yjbB	SSF109755	PhoU-like
yjbC	SSF55120	Pseudouridine synthase
yjbC	SSF55174	Alpha-L RNA-binding motif
yjbF	SSF159270	YmcC-like
yjbI	SSF141571	Pentapeptide repeat-like
yjbJ	SSF69047	Hypothetical protein YjbJ
yjbN	SSF51395	FMN-linked oxidoreductases
yjbQ	SSF111038	YjbQ-like
yjbR	SSF142906	YjbR-like
yjcC	SSF141868	EAL domain-like
yjcF	SSF141571	Pentapeptide repeat-like
yjcO	SSF81901	HCP-like
yjcP	SSF56954	Outer membrane efflux proteins (OEP)
yjcR	SSF111369	HlyD-like secretion proteins
yjcS	SSF55718	SCP-like
yjcS	SSF56281	Metallo-hydrolase/oxidoreductase
yjdA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yjdC	SSF46689	Homeodomain-like
yjdC	SSF48498	Tetracyclin repressor-like, C-terminal domain
yjdJ	SSF55729	Acyl-CoA N-acyltransferases (Nat)
yjdL	SSF103473	MFS general substrate transporter
yjeB	SSF46785	"Winged helix" DNA-binding domain
yjeE	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yjeF	SSF53613	Ribokinase-like
yjeF	SSF64153	YjeF N-terminal domain-like
yjeK	SSF102114	Radical SAM enzymes
yjeP	SSF50182	Sm-like ribonucleoproteins
yjeP	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
yjeP	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
yjeS	SSF46548	alpha-helical ferredoxin
yjfC	SSF52440	PreATP-grasp domain
yjfC	SSF56059	Glutathione synthetase ATP-binding domain-like
yjfN	SSF159871	YdgH-like
yjfO	SSF159871	YdgH-like
yjfP	SSF53474	alpha/beta-Hydrolases
yjfY	SSF159871	YdgH-like
yjgA	SSF158710	PSPTO4464-like
yjgB	SSF50129	GroES-like
yjgB	SSF51735	NAD(P)-binding Rossmann-fold domains
yjgD	SSF89946	Hypothetical protein VC0424
yjgF	SSF55298	YjgF-like
yjgH	SSF55298	YjgF-like
yjgI	SSF51735	NAD(P)-binding Rossmann-fold domains
yjgJ	SSF46689	Homeodomain-like
yjgJ	SSF48498	Tetracyclin repressor-like, C-terminal domain
yjgK	SSF51197	Clavaminate synthase-like
yjgM	SSF55729	Acyl-CoA N-acyltransferases (Nat)
yjgR	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yjhB	SSF103473	MFS general substrate transporter
yjhC	SSF51735	NAD(P)-binding Rossmann-fold domains
yjhC	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
yjhG	SSF143975	IlvD/EDD N-terminal domain-like
yjhG	SSF52016	LeuD/IlvD-like
yjhH	SSF51569	Aldolase
yjhI	SSF46785	"Winged helix" DNA-binding domain
yjhI	SSF55781	GAF domain-like
yjhP	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
yjhQ	SSF55729	Acyl-CoA N-acyltransferases (Nat)
yjhR	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yjhR	SSF56024	Phospholipase D/nuclease
yjhS	SSF52266	SGNH hydrolase
yjhT	SSF117281	Kelch motif
yjhU	SSF100950	NagB/RpiA/CoA transferase-like
yjhU	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
yjiA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yjiA	SSF90002	Hypothetical protein YjiA, C-terminal domain
yjiD	SSF160719	gpW/gp25-like
yjiE	SSF46785	"Winged helix" DNA-binding domain
yjiE	SSF53850	Periplasmic binding protein-like II
yjiJ	SSF103473	MFS general substrate transporter
yjiK	SSF50956	Thermostable phytase (3-phytase)
yjiL	SSF53067	Actin-like ATPase domain
yjiO	SSF103473	MFS general substrate transporter
yjiR	SSF46785	"Winged helix" DNA-binding domain
yjiR	SSF53383	PLP-dependent transferases
yjiZ	SSF103473	MFS general substrate transporter
yjjG	SSF56784	HAD-like
yjjI	SSF51998	PFL-like glycyl radical enzymes
yjjK	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yjjM	SSF46785	"Winged helix" DNA-binding domain
yjjM	SSF48008	GntR ligand-binding domain-like
yjjN	SSF50129	GroES-like
yjjN	SSF51735	NAD(P)-binding Rossmann-fold domains
yjjQ	SSF46894	C-terminal effector domain of the bipartite response regulators
yjjU	SSF52151	FabD/lysophospholipase-like
yjjV	SSF51556	Metallo-dependent hydrolases
yjjW	SSF102114	Radical SAM enzymes
yjjW	SSF54862	4Fe-4S ferredoxins
yjjX	SSF52972	ITPase-like
yjtD	SSF75217	alpha/beta knot
ykfA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ykfC	SSF56672	DNA/RNA polymerases
ykfF	SSF54786	YcfA/nrd intein domain
ykfG	SSF102712	JAB1/MPN domain
ykfJ	SSF103365	Hypothetical protein PH1602
ykgA	SSF46689	Homeodomain-like
ykgA	SSF55136	Probable bacterial effector-binding domain
ykgC	SSF51905	FAD/NAD(P)-binding domain
ykgC	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
ykgD	SSF46689	Homeodomain-like
ykgD	SSF51182	RmlC-like cupins
ykgF	SSF100950	NagB/RpiA/CoA transferase-like
ykgF	SSF46548	alpha-helical ferredoxin
ykgG	SSF100950	NagB/RpiA/CoA transferase-like
ykgI	SSF159871	YdgH-like
ykgK	SSF46894	C-terminal effector domain of the bipartite response regulators
ykgM	SSF143800	L28p-like
ykgM	SSF57840	Ribosomal protein L36
ykgN	SSF46689	Homeodomain-like
ylaB	SSF141868	EAL domain-like
ylbA	SSF51182	RmlC-like cupins
ylbG	SSF46689	Homeodomain-like
yliA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yliB	SSF53850	Periplasmic binding protein-like II
yliC	SSF161098	MetI-like
yliD	SSF161098	MetI-like
yliE	SSF141868	EAL domain-like
yliF	SSF55073	Nucleotide cyclase
yliG	SSF102114	Radical SAM enzymes
yliI	SSF50952	Soluble quinoprotein glucose dehydrogenase
yliJ	SSF47616	GST C-terminal domain-like
yliJ	SSF52833	Thioredoxin-like
yliK	SSF51703	Cobalamin (vitamin B12)-dependent enzymes
yliK	SSF52242	Cobalamin (vitamin B12)-binding domain
ymbA	SSF159594	XCC0632-like
ymcC	SSF159270	YmcC-like
ymdB	SSF52949	Macro domain-like
ymdC	SSF56024	Phospholipase D/nuclease
ymfB	SSF55811	Nudix
ymfC	SSF55120	Pseudouridine synthase
ymfD	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
ymfG	SSF46955	Putative DNA-binding domain
ymfK	SSF51306	LexA/Signal peptidase
ymfN	SSF46785	"Winged helix" DNA-binding domain
ymjB	SSF50331	MOP-like
ymjC	SSF51735	NAD(P)-binding Rossmann-fold domains
ynaI	SSF50182	Sm-like ribonucleoproteins
ynaI	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
ynaI	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
ynaK	SSF110849	ParB/Sulfiredoxin
ynbC	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
ynbC	SSF53474	alpha/beta-Hydrolases
ynbD	SSF52799	(Phosphotyrosine protein) phosphatases II
yncA	SSF55729	Acyl-CoA N-acyltransferases (Nat)
yncB	SSF50129	GroES-like
yncB	SSF51735	NAD(P)-binding Rossmann-fold domains
yncC	SSF46785	"Winged helix" DNA-binding domain
yncC	SSF48008	GntR ligand-binding domain-like
yncD	SSF56935	Porins
yncE	SSF51004	C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
yncG	SSF47616	GST C-terminal domain-like
yncG	SSF52833	Thioredoxin-like
yncN	SSF54786	YcfA/nrd intein domain
yneF	SSF55073	Nucleotide cyclase
yneH	SSF56601	beta-lactamase/transpeptidase-like
yneI	SSF53720	ALDH-like
yneJ	SSF46785	"Winged helix" DNA-binding domain
yneJ	SSF53850	Periplasmic binding protein-like II
ynfA	SSF103481	Multidrug resistance efflux transporter EmrE
ynfE	SSF50692	ADC-like
ynfE	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
ynfF	SSF50692	ADC-like
ynfF	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
ynfG	SSF54862	4Fe-4S ferredoxins
ynfK	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ynfL	SSF46785	"Winged helix" DNA-binding domain
ynfL	SSF53850	Periplasmic binding protein-like II
ynfM	SSF103473	MFS general substrate transporter
ynhG	SSF141523	L,D-transpeptidase catalytic domain-like
yniA	SSF56112	Protein kinase-like (PK-like)
yniC	SSF56784	HAD-like
ynjA	SSF69118	AhpD-like
ynjB	SSF53850	Periplasmic binding protein-like II
ynjC	SSF161098	MetI-like
ynjD	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ynjE	SSF52821	Rhodanese/Cell cycle control phosphatase
yoaA	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yoaB	SSF55298	YjgF-like
yoaC	SSF140670	YoaC-like
yoaD	SSF141868	EAL domain-like
yoaE	SSF54631	CBS-domain pair
yoaE	SSF56176	FAD-binding/transporter-associated domain-like
yoaG	SSF103063	Hypothetical protein YoaG
yobA	SSF81296	E set domains
yobB	SSF56317	Carbon-nitrogen hydrolase
yodA	SSF50814	Lipocalins
yodB	SSF81342	Transmembrane di-heme cytochromes
yoeB	SSF143011	RelE-like
yoeE	SSF56935	Porins
yoeF	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yohF	SSF51735	NAD(P)-binding Rossmann-fold domains
yohG	SSF56954	Outer membrane efflux proteins (OEP)
yojI	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yojI	SSF90123	ABC transporter transmembrane region
yojL	SSF143631	ApbE-like
ypdA	SSF55781	GAF domain-like
ypdA	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
ypdB	SSF52172	CheY-like
ypdC	SSF46689	Homeodomain-like
ypdD	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
ypdD	SSF51621	Phosphoenolpyruvate/pyruvate domain
ypdD	SSF52009	Phosphohistidine domain
ypdD	SSF55594	HPr-like
ypdD	SSF55804	Phoshotransferase/anion transport protein
ypdE	SSF101821	Aminopeptidase/glucanase lid domain
ypdE	SSF53187	Zn-dependent exopeptidases
ypdF	SSF53092	Creatinase/prolidase N-terminal domain
ypdF	SSF55920	Creatinase/aminopeptidase
ypdH	SSF52794	PTS system IIB component-like
ypeA	SSF55729	Acyl-CoA N-acyltransferases (Nat)
ypfE	SSF143414	CcmK-like
ypfH	SSF53474	alpha/beta-Hydrolases
ypfI	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ypfI	SSF55729	Acyl-CoA N-acyltransferases (Nat)
yphB	SSF74650	Galactose mutarotase-like
yphC	SSF50129	GroES-like
yphC	SSF51735	NAD(P)-binding Rossmann-fold domains
yphE	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yphF	SSF53822	Periplasmic binding protein-like I
yphG	SSF48452	TPR-like
yphH	SSF46785	"Winged helix" DNA-binding domain
yphH	SSF53067	Actin-like ATPase domain
ypjA	SSF103515	Autotransporter
ypjA	SSF51126	Pectin lyase-like
yqaB	SSF56784	HAD-like
yqaD	SSF51011	Glycosyl hydrolase domain
yqcA	SSF52218	Flavoproteins
yqcB	SSF55120	Pseudouridine synthase
yqcC	SSF158452	YqcC-like
yqcD	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
yqcE	SSF103473	MFS general substrate transporter
yqeA	SSF53633	Carbamate kinase-like
yqeB	SSF53187	Zn-dependent exopeptidases
yqeC	SSF53623	MurD-like peptide ligases, catalytic domain
yqeF	SSF53901	Thiolase-like
yqeH	SSF46894	C-terminal effector domain of the bipartite response regulators
yqeI	SSF46894	C-terminal effector domain of the bipartite response regulators
yqfB	SSF88697	PUA domain-like
yqfE	SSF53850	Periplasmic binding protein-like II
yqgE	SSF143456	VC0467-like
yqgF	SSF53098	Ribonuclease H-like
yqhC	SSF46689	Homeodomain-like
yqhD	SSF56796	Dehydroquinate synthase-like
yqhH	SSF58042	Outer membrane lipoprotein
yqiA	SSF53474	alpha/beta-Hydrolases
yqiG	SSF141729	FimD N-terminal domain-like
yqiH	SSF49354	PapD-like
yqiH	SSF49584	Periplasmic chaperone C-domain
yqiI	SSF49401	Bacterial adhesins
yqiK	SSF117892	Band 7/SPFH domain
yqjG	SSF47616	GST C-terminal domain-like
yqjG	SSF52833	Thioredoxin-like
yqjH	SSF63380	Riboflavin synthase domain-like
yqjI	SSF46785	"Winged helix" DNA-binding domain
yraH	SSF49401	Bacterial adhesins
yraI	SSF49354	PapD-like
yraI	SSF49584	Periplasmic chaperone C-domain
yraJ	SSF141729	FimD N-terminal domain-like
yraK	SSF49401	Bacterial adhesins
yraL	SSF53790	Tetrapyrrole methylase
yraM	SSF48435	Bacterial muramidases
yraM	SSF53822	Periplasmic binding protein-like I
yraN	SSF52980	Restriction endonuclease-like
yraO	SSF53697	SIS domain
yraR	SSF51735	NAD(P)-binding Rossmann-fold domains
yrbA	SSF82657	BolA-like
yrbB	SSF52091	SpoIIaa-like
yrbF	SSF52540	P-loop containing nucleoside triphosphate hydrolases
yrbL	SSF56112	Protein kinase-like (PK-like)
yrdA	SSF51161	Trimeric LpxA-like enzymes
yrdB	SSF160272	Shew3726-like
yrdC	SSF55821	YrdC/RibB
yrdD	SSF57783	Zinc beta-ribbon
yrfD	SSF53067	Actin-like ATPase domain
yrfG	SSF56784	HAD-like
ysgA	SSF53474	alpha/beta-Hydrolases
ytfA	SSF48498	Tetracyclin repressor-like, C-terminal domain
ytfF	SSF103481	Multidrug resistance efflux transporter EmrE
ytfG	SSF51735	NAD(P)-binding Rossmann-fold domains
ytfH	SSF46785	"Winged helix" DNA-binding domain
ytfL	SSF54631	CBS-domain pair
ytfL	SSF56176	FAD-binding/transporter-associated domain-like
ytfP	SSF110857	Gamma-glutamyl cyclotransferase-like
ytfQ	SSF53822	Periplasmic binding protein-like I
ytfR	SSF52540	P-loop containing nucleoside triphosphate hydrolases
ytjC	SSF53254	Phosphoglycerate mutase-like
zapA	SSF102829	Cell division protein ZapA-like
zipA	SSF64383	Cell-division protein ZipA, C-terminal domain
zitB	SSF160240	Cation efflux protein cytoplasmic domain-like
zitB	SSF161111	Cation efflux protein transmembrane domain-like
zntA	SSF55008	HMA, heavy metal-associated domain
zntA	SSF56784	HAD-like
zntA	SSF81653	Calcium ATPase, transduction domain A
zntA	SSF81665	Calcium ATPase, transmembrane domain M
zntR	SSF46955	Putative DNA-binding domain
znuA	SSF53807	"Helical backbone" metal receptor
znuB	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
znuC	SSF52540	P-loop containing nucleoside triphosphate hydrolases
zraR	SSF46689	Homeodomain-like
zraR	SSF52172	CheY-like
zraR	SSF52540	P-loop containing nucleoside triphosphate hydrolases
zraS	SSF103190	Sensory domain-like
zraS	SSF47384	Homodimeric domain of signal transducing histidine kinase
zraS	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
zupT	SSF53213	LigB-like
zur	SSF46785	"Winged helix" DNA-binding domain
zwf	SSF51735	NAD(P)-binding Rossmann-fold domains
zwf	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain