Francci3_0030	PWY-6857	retinol biosynthesis
Francci3_0043	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Francci3_0043	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Francci3_0045	PWY-3801	sucrose degradation II (sucrose synthase)
Francci3_0045	PWY-5054	sorbitol biosynthesis I
Francci3_0045	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Francci3_0045	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Francci3_0045	PWY-5659	GDP-mannose biosynthesis
Francci3_0045	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Francci3_0045	PWY-621	sucrose degradation III (sucrose invertase)
Francci3_0045	PWY-622	starch biosynthesis
Francci3_0045	PWY-6531	mannitol cycle
Francci3_0045	PWY-6981	chitin biosynthesis
Francci3_0045	PWY-7238	sucrose biosynthesis II
Francci3_0045	PWY-7347	sucrose biosynthesis III
Francci3_0045	PWY-7385	1,3-propanediol biosynthesis (engineered)
Francci3_0079	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Francci3_0079	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Francci3_0094	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Francci3_0094	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Francci3_0094	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Francci3_0094	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Francci3_0095	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Francci3_0095	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Francci3_0095	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Francci3_0112	PWY-2201	folate transformations I
Francci3_0112	PWY-3841	folate transformations II
Francci3_0175	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Francci3_0181	PWY-4321	L-glutamate degradation IV
Francci3_0207	PWY-7456	mannan degradation
Francci3_0216	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Francci3_0216	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Francci3_0216	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Francci3_0216	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Francci3_0261	PWY-2941	L-lysine biosynthesis II
Francci3_0261	PWY-2942	L-lysine biosynthesis III
Francci3_0261	PWY-5097	L-lysine biosynthesis VI
Francci3_0261	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Francci3_0261	PWY-6559	spermidine biosynthesis II
Francci3_0261	PWY-6562	norspermidine biosynthesis
Francci3_0261	PWY-7153	grixazone biosynthesis
Francci3_0261	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Francci3_0262	PWY-2941	L-lysine biosynthesis II
Francci3_0262	PWY-2942	L-lysine biosynthesis III
Francci3_0262	PWY-5097	L-lysine biosynthesis VI
Francci3_0262	PWY-6559	spermidine biosynthesis II
Francci3_0262	PWY-6562	norspermidine biosynthesis
Francci3_0262	PWY-7153	grixazone biosynthesis
Francci3_0264	PWY-3162	L-tryptophan degradation V (side chain pathway)
Francci3_0264	PWY-5057	L-valine degradation II
Francci3_0264	PWY-5076	L-leucine degradation III
Francci3_0264	PWY-5078	L-isoleucine degradation II
Francci3_0264	PWY-5079	L-phenylalanine degradation III
Francci3_0264	PWY-5082	L-methionine degradation III
Francci3_0264	PWY-5480	pyruvate fermentation to ethanol I
Francci3_0264	PWY-5486	pyruvate fermentation to ethanol II
Francci3_0264	PWY-5751	phenylethanol biosynthesis
Francci3_0264	PWY-6028	acetoin degradation
Francci3_0264	PWY-6313	serotonin degradation
Francci3_0264	PWY-6333	acetaldehyde biosynthesis I
Francci3_0264	PWY-6342	noradrenaline and adrenaline degradation
Francci3_0264	PWY-6587	pyruvate fermentation to ethanol III
Francci3_0264	PWY-6802	salidroside biosynthesis
Francci3_0264	PWY-6871	3-methylbutanol biosynthesis
Francci3_0264	PWY-7013	L-1,2-propanediol degradation
Francci3_0264	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Francci3_0264	PWY-7118	chitin degradation to ethanol
Francci3_0264	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Francci3_0264	PWY-7557	dehydrodiconiferyl alcohol degradation
Francci3_0293	PWY-7456	mannan degradation
Francci3_0307	PWY-5147	oleate biosynthesis I (plants)
Francci3_0315	PWY-381	nitrate reduction II (assimilatory)
Francci3_0315	PWY-5675	nitrate reduction V (assimilatory)
Francci3_0315	PWY-6549	L-glutamine biosynthesis III
Francci3_0315	PWY-6963	ammonia assimilation cycle I
Francci3_0315	PWY-6964	ammonia assimilation cycle II
Francci3_0317	PWY-5750	itaconate biosynthesis
Francci3_0317	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Francci3_0317	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Francci3_0346	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Francci3_0346	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Francci3_0375	PWY-801	L-homocysteine and L-cysteine interconversion
Francci3_0383	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Francci3_0428	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Francci3_0428	PWY-6416	quinate degradation II
Francci3_0428	PWY-6707	gallate biosynthesis
Francci3_0433	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Francci3_0434	PWY-6164	3-dehydroquinate biosynthesis I
Francci3_0449	PWY-5350	thiosulfate disproportionation III (rhodanese)
Francci3_0468	PWY-1622	formaldehyde assimilation I (serine pathway)
Francci3_0468	PWY-5484	glycolysis II (from fructose 6-phosphate)
Francci3_0476	PWY-3341	L-proline biosynthesis III
Francci3_0476	PWY-4981	L-proline biosynthesis II (from arginine)
Francci3_0476	PWY-6344	L-ornithine degradation II (Stickland reaction)
Francci3_0485	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Francci3_0486	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Francci3_0486	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Francci3_0487	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Francci3_0487	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Francci3_0488	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Francci3_0488	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Francci3_0507	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Francci3_0519	PWY-5198	factor 420 biosynthesis
Francci3_0519	PWY-7371	1,4-dihydroxy-6-naphthoate biosynthesis II
Francci3_0519	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
Francci3_0522	PWY-7371	1,4-dihydroxy-6-naphthoate biosynthesis II
Francci3_0522	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
Francci3_0525	PWY-6683	sulfate reduction III (assimilatory)
Francci3_0528	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Francci3_0528	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Francci3_0528	PWY-5194	siroheme biosynthesis
Francci3_0528	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Francci3_0529	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Francci3_0530	PWY-101	photosynthesis light reactions
Francci3_0530	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Francci3_0533	PWY-5198	factor 420 biosynthesis
Francci3_0535	PWY-5839	menaquinol-7 biosynthesis
Francci3_0535	PWY-5844	menaquinol-9 biosynthesis
Francci3_0535	PWY-5849	menaquinol-6 biosynthesis
Francci3_0535	PWY-5890	menaquinol-10 biosynthesis
Francci3_0535	PWY-5891	menaquinol-11 biosynthesis
Francci3_0535	PWY-5892	menaquinol-12 biosynthesis
Francci3_0535	PWY-5895	menaquinol-13 biosynthesis
Francci3_0559	PWY-5686	UMP biosynthesis
Francci3_0603	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Francci3_0616	PWY-6749	CMP-legionaminate biosynthesis I
Francci3_0617	PWY-6749	CMP-legionaminate biosynthesis I
Francci3_0620	PWY-6012	acyl carrier protein metabolism I
Francci3_0620	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Francci3_0621	PWY-6938	NADH repair
Francci3_0622	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Francci3_0624	PWY-1622	formaldehyde assimilation I (serine pathway)
Francci3_0624	PWY-181	photorespiration
Francci3_0624	PWY-2161	folate polyglutamylation
Francci3_0624	PWY-2201	folate transformations I
Francci3_0624	PWY-3661	glycine betaine degradation I
Francci3_0624	PWY-3661-1	glycine betaine degradation II (mammalian)
Francci3_0624	PWY-3841	folate transformations II
Francci3_0624	PWY-5497	purine nucleobases degradation II (anaerobic)
Francci3_0636	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Francci3_0636	PWY-6596	adenosine nucleotides degradation I
Francci3_0636	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Francci3_0645	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Francci3_0649	PWY-4381	fatty acid biosynthesis initiation I
Francci3_0649	PWY-5743	3-hydroxypropanoate cycle
Francci3_0649	PWY-5744	glyoxylate assimilation
Francci3_0649	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Francci3_0649	PWY-6679	jadomycin biosynthesis
Francci3_0649	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Francci3_0651	PWY-5392	reductive TCA cycle II
Francci3_0651	PWY-5537	pyruvate fermentation to acetate V
Francci3_0651	PWY-5538	pyruvate fermentation to acetate VI
Francci3_0651	PWY-5690	TCA cycle II (plants and fungi)
Francci3_0651	PWY-5913	TCA cycle VI (obligate autotrophs)
Francci3_0651	PWY-6728	methylaspartate cycle
Francci3_0651	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Francci3_0651	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Francci3_0652	PWY-5392	reductive TCA cycle II
Francci3_0652	PWY-5537	pyruvate fermentation to acetate V
Francci3_0652	PWY-5538	pyruvate fermentation to acetate VI
Francci3_0652	PWY-5690	TCA cycle II (plants and fungi)
Francci3_0652	PWY-5913	TCA cycle VI (obligate autotrophs)
Francci3_0652	PWY-6728	methylaspartate cycle
Francci3_0652	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Francci3_0652	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Francci3_0656	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Francci3_0656	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Francci3_0657	PWY-6123	inosine-5'-phosphate biosynthesis I
Francci3_0657	PWY-6124	inosine-5'-phosphate biosynthesis II
Francci3_0657	PWY-7234	inosine-5'-phosphate biosynthesis III
Francci3_0678	PWY-3781	aerobic respiration I (cytochrome c)
Francci3_0678	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Francci3_0678	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Francci3_0678	PWY-5690	TCA cycle II (plants and fungi)
Francci3_0678	PWY-6728	methylaspartate cycle
Francci3_0678	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Francci3_0678	PWY-7254	TCA cycle VII (acetate-producers)
Francci3_0678	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Francci3_0679	PWY-3781	aerobic respiration I (cytochrome c)
Francci3_0679	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Francci3_0679	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Francci3_0679	PWY-5690	TCA cycle II (plants and fungi)
Francci3_0679	PWY-6728	methylaspartate cycle
Francci3_0679	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Francci3_0679	PWY-7254	TCA cycle VII (acetate-producers)
Francci3_0679	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Francci3_0685	PWY-7181	pyrimidine deoxyribonucleosides degradation
Francci3_0686	PWY-6609	adenine and adenosine salvage III
Francci3_0686	PWY-6611	adenine and adenosine salvage V
Francci3_0686	PWY-7179	purine deoxyribonucleosides degradation I
Francci3_0686	PWY-7179-1	purine deoxyribonucleosides degradation
Francci3_0688	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Francci3_0689	PWY-7183	pyrimidine nucleobases salvage I
Francci3_0690	PWY-6749	CMP-legionaminate biosynthesis I
Francci3_0691	PWY-4202	arsenate detoxification I (glutaredoxin)
Francci3_0691	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Francci3_0691	PWY-6608	guanosine nucleotides degradation III
Francci3_0691	PWY-6609	adenine and adenosine salvage III
Francci3_0691	PWY-6611	adenine and adenosine salvage V
Francci3_0691	PWY-6620	guanine and guanosine salvage
Francci3_0691	PWY-6627	salinosporamide A biosynthesis
Francci3_0691	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Francci3_0691	PWY-7179	purine deoxyribonucleosides degradation I
Francci3_0691	PWY-7179-1	purine deoxyribonucleosides degradation
Francci3_0693	PWY-6840	homoglutathione biosynthesis
Francci3_0693	PWY-7255	ergothioneine biosynthesis I (bacteria)
Francci3_0695	PWY-4041	&gamma;-glutamyl cycle
Francci3_0700	PWY-4381	fatty acid biosynthesis initiation I
Francci3_0700	PWY-5743	3-hydroxypropanoate cycle
Francci3_0700	PWY-5744	glyoxylate assimilation
Francci3_0700	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Francci3_0700	PWY-6679	jadomycin biosynthesis
Francci3_0700	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Francci3_0701	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Francci3_0701	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Francci3_0708	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Francci3_0708	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Francci3_0708	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Francci3_0708	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Francci3_0709	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Francci3_0741	PWY-5199	factor 420 polyglutamylation
Francci3_0742	PWY-5198	factor 420 biosynthesis
Francci3_0745	PWY-5198	factor 420 biosynthesis
Francci3_0748	PWY-3861	mannitol degradation II
Francci3_0748	PWY-3881	mannitol biosynthesis
Francci3_0748	PWY-5659	GDP-mannose biosynthesis
Francci3_0748	PWY-7456	mannan degradation
Francci3_0748	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Francci3_0751	PWY-6749	CMP-legionaminate biosynthesis I
Francci3_0753	PWY-3801	sucrose degradation II (sucrose synthase)
Francci3_0753	PWY-3861	mannitol degradation II
Francci3_0753	PWY-3881	mannitol biosynthesis
Francci3_0753	PWY-5054	sorbitol biosynthesis I
Francci3_0753	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Francci3_0753	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Francci3_0753	PWY-5659	GDP-mannose biosynthesis
Francci3_0753	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Francci3_0753	PWY-621	sucrose degradation III (sucrose invertase)
Francci3_0753	PWY-622	starch biosynthesis
Francci3_0753	PWY-6531	mannitol cycle
Francci3_0753	PWY-6981	chitin biosynthesis
Francci3_0753	PWY-7238	sucrose biosynthesis II
Francci3_0753	PWY-7347	sucrose biosynthesis III
Francci3_0753	PWY-7385	1,3-propanediol biosynthesis (engineered)
Francci3_0753	PWY-7456	mannan degradation
Francci3_0753	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Francci3_0793	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Francci3_0793	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Francci3_0794	PWY-6683	sulfate reduction III (assimilatory)
Francci3_0796	PWY-5194	siroheme biosynthesis
Francci3_0796	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Francci3_0824	PWY-7560	methylerythritol phosphate pathway II
Francci3_0832	PWY-5704	urea degradation II
Francci3_0833	PWY-5704	urea degradation II
Francci3_0834	PWY-5704	urea degradation II
Francci3_0835	PWY-6610	adenine and adenosine salvage IV
Francci3_0838	PWY-5497	purine nucleobases degradation II (anaerobic)
Francci3_0838	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Francci3_0838	PWY-6538	caffeine degradation III (bacteria, via demethylation)
Francci3_0838	PWY-6596	adenosine nucleotides degradation I
Francci3_0838	PWY-6606	guanosine nucleotides degradation II
Francci3_0838	PWY-6607	guanosine nucleotides degradation I
Francci3_0838	PWY-6608	guanosine nucleotides degradation III
Francci3_0838	PWY-6999	theophylline degradation
Francci3_0839	PWY-5686	UMP biosynthesis
Francci3_0839	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
Francci3_0839	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
Francci3_0840	PWY-5691	urate degradation to allantoin I
Francci3_0840	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
Francci3_0840	PWY-7394	urate degradation to allantoin II
Francci3_0842	PWY-5691	urate degradation to allantoin I
Francci3_0842	PWY-7394	urate degradation to allantoin II
Francci3_0848	PWY-40	putrescine biosynthesis I
Francci3_0848	PWY-6305	putrescine biosynthesis IV
Francci3_0857	PWY-3821	galactose degradation III
Francci3_0857	PWY-6317	galactose degradation I (Leloir pathway)
Francci3_0857	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Francci3_0857	PWY-6527	stachyose degradation
Francci3_0857	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Francci3_0857	PWY-7344	UDP-D-galactose biosynthesis
Francci3_0860	PWY-5381	pyridine nucleotide cycling (plants)
Francci3_0868	PWY-6936	seleno-amino acid biosynthesis
Francci3_0869	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Francci3_0872	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Francci3_0872	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Francci3_0926	PWY-723	alkylnitronates degradation
Francci3_0927	PWY-6012	acyl carrier protein metabolism I
Francci3_0927	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Francci3_0938	PWY-4261	glycerol degradation I
Francci3_0938	PWY-6118	glycerol-3-phosphate shuttle
Francci3_0938	PWY-6952	glycerophosphodiester degradation
Francci3_0941	PWY-4261	glycerol degradation I
Francci3_0941	PWY-6118	glycerol-3-phosphate shuttle
Francci3_0941	PWY-6952	glycerophosphodiester degradation
Francci3_0943	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Francci3_0943	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Francci3_0962	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Francci3_0962	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Francci3_0968	PWY-4061	glutathione-mediated detoxification I
Francci3_0968	PWY-6842	glutathione-mediated detoxification II
Francci3_0968	PWY-7112	4-hydroxy-2-nonenal detoxification
Francci3_0988	PWY-4381	fatty acid biosynthesis initiation I
Francci3_0988	PWY-5743	3-hydroxypropanoate cycle
Francci3_0988	PWY-5744	glyoxylate assimilation
Francci3_0988	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Francci3_0988	PWY-6679	jadomycin biosynthesis
Francci3_0988	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Francci3_0990	PWY-4381	fatty acid biosynthesis initiation I
Francci3_1000	PWY-1361	benzoyl-CoA degradation I (aerobic)
Francci3_1000	PWY-5109	2-methylbutanoate biosynthesis
Francci3_1000	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Francci3_1000	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Francci3_1000	PWY-5177	glutaryl-CoA degradation
Francci3_1000	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Francci3_1000	PWY-6435	4-hydroxybenzoate biosynthesis V
Francci3_1000	PWY-6583	pyruvate fermentation to butanol I
Francci3_1000	PWY-6863	pyruvate fermentation to hexanol
Francci3_1000	PWY-6883	pyruvate fermentation to butanol II
Francci3_1000	PWY-6944	androstenedione degradation
Francci3_1000	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Francci3_1000	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Francci3_1000	PWY-7007	methyl ketone biosynthesis
Francci3_1000	PWY-7046	4-coumarate degradation (anaerobic)
Francci3_1000	PWY-7094	fatty acid salvage
Francci3_1000	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Francci3_1000	PWY-735	jasmonic acid biosynthesis
Francci3_1000	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Francci3_1020	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Francci3_1020	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Francci3_1050	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Francci3_1053	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Francci3_1053	PWY-5739	GDP-D-perosamine biosynthesis
Francci3_1053	PWY-5740	GDP-L-colitose biosynthesis
Francci3_1053	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Francci3_1060	PWY-7456	mannan degradation
Francci3_1085	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Francci3_1085	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Francci3_1112	PWY-5155	&beta;-alanine biosynthesis III
Francci3_1157	PWY-5941	glycogen degradation II (eukaryotic)
Francci3_1157	PWY-6724	starch degradation II
Francci3_1157	PWY-6737	starch degradation V
Francci3_1157	PWY-7238	sucrose biosynthesis II
Francci3_1160	PWY-4061	glutathione-mediated detoxification I
Francci3_1160	PWY-6842	glutathione-mediated detoxification II
Francci3_1160	PWY-7112	4-hydroxy-2-nonenal detoxification
Francci3_1162	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Francci3_1162	PWY-5723	Rubisco shunt
Francci3_1165	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Francci3_1188	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
Francci3_1188	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
Francci3_1188	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
Francci3_1188	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
Francci3_1188	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
Francci3_1188	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
Francci3_1188	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
Francci3_1188	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
Francci3_1188	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Francci3_1188	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
Francci3_1208	PWY-2161	folate polyglutamylation
Francci3_1209	PWY-2161	folate polyglutamylation
Francci3_1210	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Francci3_1210	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Francci3_1210	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Francci3_1210	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Francci3_1210	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Francci3_1210	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Francci3_1210	PWY-7205	CMP phosphorylation
Francci3_1210	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Francci3_1210	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Francci3_1210	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Francci3_1210	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Francci3_1210	PWY-7224	purine deoxyribonucleosides salvage
Francci3_1210	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Francci3_1210	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Francci3_1228	PWY-6728	methylaspartate cycle
Francci3_1228	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Francci3_1228	PWY-7118	chitin degradation to ethanol
Francci3_1228	PWY-7294	xylose degradation IV
Francci3_1228	PWY-7295	L-arabinose degradation IV
Francci3_1231	PWY-2723	trehalose degradation V
Francci3_1231	PWY-3801	sucrose degradation II (sucrose synthase)
Francci3_1231	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Francci3_1231	PWY-5661	GDP-glucose biosynthesis
Francci3_1231	PWY-5661-1	Francci3_1231
Francci3_1231	PWY-5940	streptomycin biosynthesis
Francci3_1231	PWY-5941	glycogen degradation II (eukaryotic)
Francci3_1231	PWY-622	starch biosynthesis
Francci3_1231	PWY-6731	starch degradation III
Francci3_1231	PWY-6737	starch degradation V
Francci3_1231	PWY-6749	CMP-legionaminate biosynthesis I
Francci3_1231	PWY-7238	sucrose biosynthesis II
Francci3_1231	PWY-7343	UDP-glucose biosynthesis
Francci3_1232	PWY-5381	pyridine nucleotide cycling (plants)
Francci3_1232	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Francci3_1242	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Francci3_1242	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Francci3_1276	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Francci3_1276	PWY-6549	L-glutamine biosynthesis III
Francci3_1276	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Francci3_1276	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Francci3_1278	PWY-6891	thiazole biosynthesis II (Bacillus)
Francci3_1278	PWY-6892	thiazole biosynthesis I (E. coli)
Francci3_1278	PWY-7560	methylerythritol phosphate pathway II
Francci3_1305	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Francci3_1305	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Francci3_1305	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Francci3_1307	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Francci3_1307	PWY-5739	GDP-D-perosamine biosynthesis
Francci3_1307	PWY-5740	GDP-L-colitose biosynthesis
Francci3_1307	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Francci3_1308	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
Francci3_1318	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Francci3_1318	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Francci3_1318	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Francci3_1318	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Francci3_1326	PWY-6891	thiazole biosynthesis II (Bacillus)
Francci3_1326	PWY-6892	thiazole biosynthesis I (E. coli)
Francci3_1326	PWY-7560	methylerythritol phosphate pathway II
Francci3_1329	PWY-1361	benzoyl-CoA degradation I (aerobic)
Francci3_1329	PWY-5109	2-methylbutanoate biosynthesis
Francci3_1329	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Francci3_1329	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Francci3_1329	PWY-5177	glutaryl-CoA degradation
Francci3_1329	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Francci3_1329	PWY-6435	4-hydroxybenzoate biosynthesis V
Francci3_1329	PWY-6583	pyruvate fermentation to butanol I
Francci3_1329	PWY-6863	pyruvate fermentation to hexanol
Francci3_1329	PWY-6883	pyruvate fermentation to butanol II
Francci3_1329	PWY-6944	androstenedione degradation
Francci3_1329	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Francci3_1329	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Francci3_1329	PWY-7007	methyl ketone biosynthesis
Francci3_1329	PWY-7046	4-coumarate degradation (anaerobic)
Francci3_1329	PWY-7094	fatty acid salvage
Francci3_1329	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Francci3_1329	PWY-735	jasmonic acid biosynthesis
Francci3_1329	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Francci3_1334	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Francci3_1334	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Francci3_1335	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Francci3_1335	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Francci3_1339	PWY-5340	sulfate activation for sulfonation
Francci3_1341	PWY-5278	sulfite oxidation III
Francci3_1341	PWY-5340	sulfate activation for sulfonation
Francci3_1341	PWY-6683	sulfate reduction III (assimilatory)
Francci3_1341	PWY-6932	selenate reduction
Francci3_1342	PWY-5278	sulfite oxidation III
Francci3_1342	PWY-5340	sulfate activation for sulfonation
Francci3_1342	PWY-6683	sulfate reduction III (assimilatory)
Francci3_1342	PWY-6932	selenate reduction
Francci3_1347	PWY-2661	trehalose biosynthesis V
Francci3_1349	PWY-2661	trehalose biosynthesis V
Francci3_1358	PWY-5958	acridone alkaloid biosynthesis
Francci3_1358	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Francci3_1358	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Francci3_1366	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
Francci3_1367	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
Francci3_1375	PWY-6605	adenine and adenosine salvage II
Francci3_1375	PWY-6610	adenine and adenosine salvage IV
Francci3_1382	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Francci3_1389	PWY-2201	folate transformations I
Francci3_1389	PWY-3841	folate transformations II
Francci3_1411	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Francci3_1411	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Francci3_1412	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Francci3_1412	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Francci3_1412	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Francci3_1413	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Francci3_1413	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Francci3_1415	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Francci3_1415	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Francci3_1415	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Francci3_1415	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Francci3_1417	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Francci3_1417	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Francci3_1420	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Francci3_1436	PWY-5663	tetrahydrobiopterin biosynthesis I
Francci3_1436	PWY-5664	tetrahydrobiopterin biosynthesis II
Francci3_1436	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Francci3_1436	PWY-6703	preQ<sub>0</sub> biosynthesis
Francci3_1436	PWY-6983	tetrahydrobiopterin biosynthesis III
Francci3_1436	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Francci3_1456	PWY-7205	CMP phosphorylation
Francci3_1462	PWY-5269	cardiolipin biosynthesis II
Francci3_1462	PWY-5668	cardiolipin biosynthesis I
Francci3_1463	PWY-6749	CMP-legionaminate biosynthesis I
Francci3_1484	PWY-5331	taurine biosynthesis
Francci3_1492	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Francci3_1492	PWY-2201	folate transformations I
Francci3_1492	PWY-3841	folate transformations II
Francci3_1492	PWY-5030	L-histidine degradation III
Francci3_1492	PWY-5497	purine nucleobases degradation II (anaerobic)
Francci3_1492	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Francci3_1496	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Francci3_1496	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Francci3_1500	PWY-4981	L-proline biosynthesis II (from arginine)
Francci3_1504	PWY-6012	acyl carrier protein metabolism I
Francci3_1504	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Francci3_1519	PWY-6683	sulfate reduction III (assimilatory)
Francci3_1523	PWY-5194	siroheme biosynthesis
Francci3_1523	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Francci3_1527	PWY-4381	fatty acid biosynthesis initiation I
Francci3_1527	PWY-5743	3-hydroxypropanoate cycle
Francci3_1527	PWY-5744	glyoxylate assimilation
Francci3_1527	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Francci3_1527	PWY-6679	jadomycin biosynthesis
Francci3_1527	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Francci3_1550	PWY-1361	benzoyl-CoA degradation I (aerobic)
Francci3_1550	PWY-5109	2-methylbutanoate biosynthesis
Francci3_1550	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Francci3_1550	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Francci3_1550	PWY-5177	glutaryl-CoA degradation
Francci3_1550	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Francci3_1550	PWY-6435	4-hydroxybenzoate biosynthesis V
Francci3_1550	PWY-6583	pyruvate fermentation to butanol I
Francci3_1550	PWY-6863	pyruvate fermentation to hexanol
Francci3_1550	PWY-6883	pyruvate fermentation to butanol II
Francci3_1550	PWY-6944	androstenedione degradation
Francci3_1550	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Francci3_1550	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Francci3_1550	PWY-7007	methyl ketone biosynthesis
Francci3_1550	PWY-7046	4-coumarate degradation (anaerobic)
Francci3_1550	PWY-7094	fatty acid salvage
Francci3_1550	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Francci3_1550	PWY-735	jasmonic acid biosynthesis
Francci3_1550	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Francci3_1563	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
Francci3_1563	PWY-5940	streptomycin biosynthesis
Francci3_1637	PWY-1042	glycolysis IV (plant cytosol)
Francci3_1637	PWY-5484	glycolysis II (from fructose 6-phosphate)
Francci3_1637	PWY-6901	superpathway of glucose and xylose degradation
Francci3_1637	PWY-7003	glycerol degradation to butanol
Francci3_1638	PWY-1042	glycolysis IV (plant cytosol)
Francci3_1638	PWY-5484	glycolysis II (from fructose 6-phosphate)
Francci3_1638	PWY-6886	1-butanol autotrophic biosynthesis
Francci3_1638	PWY-6901	superpathway of glucose and xylose degradation
Francci3_1638	PWY-7003	glycerol degradation to butanol
Francci3_1639	PWY-1042	glycolysis IV (plant cytosol)
Francci3_1639	PWY-5484	glycolysis II (from fructose 6-phosphate)
Francci3_1639	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Francci3_1639	PWY-7003	glycerol degradation to butanol
Francci3_1645	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Francci3_1645	PWY-6855	chitin degradation I (archaea)
Francci3_1645	PWY-6906	chitin derivatives degradation
Francci3_1647	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Francci3_1648	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Francci3_1648	PWY-5723	Rubisco shunt
Francci3_1657	PWY-4261	glycerol degradation I
Francci3_1664	PWY-6823	molybdenum cofactor biosynthesis
Francci3_1664	PWY-6891	thiazole biosynthesis II (Bacillus)
Francci3_1664	PWY-6892	thiazole biosynthesis I (E. coli)
Francci3_1664	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Francci3_1667	PWY-622	starch biosynthesis
Francci3_1668	PWY-622	starch biosynthesis
Francci3_1669	PWY-3221	dTDP-L-rhamnose biosynthesis II
Francci3_1669	PWY-6808	dTDP-D-forosamine biosynthesis
Francci3_1669	PWY-6942	dTDP-D-desosamine biosynthesis
Francci3_1669	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Francci3_1669	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Francci3_1669	PWY-6974	dTDP-L-olivose biosynthesis
Francci3_1669	PWY-6976	dTDP-L-mycarose biosynthesis
Francci3_1669	PWY-7104	dTDP-L-megosamine biosynthesis
Francci3_1669	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Francci3_1669	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Francci3_1669	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Francci3_1669	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Francci3_1669	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Francci3_1669	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Francci3_1669	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Francci3_1669	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Francci3_1678	PWY-1042	glycolysis IV (plant cytosol)
Francci3_1678	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Francci3_1678	PWY-5484	glycolysis II (from fructose 6-phosphate)
Francci3_1678	PWY-5723	Rubisco shunt
Francci3_1678	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Francci3_1678	PWY-6886	1-butanol autotrophic biosynthesis
Francci3_1678	PWY-6901	superpathway of glucose and xylose degradation
Francci3_1678	PWY-7003	glycerol degradation to butanol
Francci3_1678	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Francci3_1678	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Francci3_1748	PWY-5663	tetrahydrobiopterin biosynthesis I
Francci3_1748	PWY-5664	tetrahydrobiopterin biosynthesis II
Francci3_1748	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Francci3_1748	PWY-6703	preQ<sub>0</sub> biosynthesis
Francci3_1748	PWY-6983	tetrahydrobiopterin biosynthesis III
Francci3_1748	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Francci3_1753	PWY-6703	preQ<sub>0</sub> biosynthesis
Francci3_1759	PWY-4981	L-proline biosynthesis II (from arginine)
Francci3_1797	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Francci3_1797	PWY-5723	Rubisco shunt
Francci3_1804	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Francci3_1804	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Francci3_1804	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Francci3_1804	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Francci3_1804	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Francci3_1804	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Francci3_1804	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Francci3_1804	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Francci3_1814	PWY-6823	molybdenum cofactor biosynthesis
Francci3_1815	PWY-7158	L-phenylalanine degradation V
Francci3_1826	PWY-7158	L-phenylalanine degradation V
Francci3_1828	PWY-7158	L-phenylalanine degradation V
Francci3_1861	PWY-6654	phosphopantothenate biosynthesis III
Francci3_1894	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Francci3_1894	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Francci3_1894	PWY-5989	stearate biosynthesis II (bacteria and plants)
Francci3_1894	PWY-6113	superpathway of mycolate biosynthesis
Francci3_1894	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Francci3_1894	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Francci3_1894	PWY-7096	triclosan resistance
Francci3_1894	PWYG-321	mycolate biosynthesis
Francci3_1910	PWY-5691	urate degradation to allantoin I
Francci3_1925	PWY-5147	oleate biosynthesis I (plants)
Francci3_1983	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Francci3_1983	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Francci3_1991	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Francci3_1991	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Francci3_1991	PWY-6936	seleno-amino acid biosynthesis
Francci3_1991	PWY-702	L-methionine biosynthesis II
Francci3_2007	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Francci3_2007	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Francci3_2009	PWY-3781	aerobic respiration I (cytochrome c)
Francci3_2009	PWY-4521	arsenite oxidation I (respiratory)
Francci3_2009	PWY-6692	Fe(II) oxidation
Francci3_2009	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Francci3_2069	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
Francci3_2071	PWY-2941	L-lysine biosynthesis II
Francci3_2071	PWY-2942	L-lysine biosynthesis III
Francci3_2071	PWY-5097	L-lysine biosynthesis VI
Francci3_2071	PWY-6559	spermidine biosynthesis II
Francci3_2071	PWY-6562	norspermidine biosynthesis
Francci3_2071	PWY-7153	grixazone biosynthesis
Francci3_2090	PWY-4381	fatty acid biosynthesis initiation I
Francci3_2095	PWY-4381	fatty acid biosynthesis initiation I
Francci3_2112	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Francci3_2112	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Francci3_2135	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Francci3_2135	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Francci3_2169	PWY-5743	3-hydroxypropanoate cycle
Francci3_2169	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Francci3_2169	PWY-6728	methylaspartate cycle
Francci3_2169	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Francci3_2203	PWY-5913	TCA cycle VI (obligate autotrophs)
Francci3_2203	PWY-6549	L-glutamine biosynthesis III
Francci3_2203	PWY-6728	methylaspartate cycle
Francci3_2203	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Francci3_2203	PWY-7124	ethylene biosynthesis V (engineered)
Francci3_2203	PWY-7254	TCA cycle VII (acetate-producers)
Francci3_2203	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Francci3_2212	PWY-6857	retinol biosynthesis
Francci3_2298	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Francci3_2298	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Francci3_2298	PWY-6268	adenosylcobalamin salvage from cobalamin
Francci3_2298	PWY-6269	adenosylcobalamin salvage from cobinamide II
Francci3_2313	PWY-2201	folate transformations I
Francci3_2313	PWY-3841	folate transformations II
Francci3_2381	PWY-7205	CMP phosphorylation
Francci3_2385	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Francci3_2403	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Francci3_2414	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Francci3_2414	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Francci3_2415	PWY-5350	thiosulfate disproportionation III (rhodanese)
Francci3_2415	PWY-6654	phosphopantothenate biosynthesis III
Francci3_2426	PWY-6936	seleno-amino acid biosynthesis
Francci3_2426	PWY-7274	D-cycloserine biosynthesis
Francci3_2427	PWY-6936	seleno-amino acid biosynthesis
Francci3_2464	PWY-3461	L-tyrosine biosynthesis II
Francci3_2464	PWY-3462	L-phenylalanine biosynthesis II
Francci3_2464	PWY-6120	L-tyrosine biosynthesis III
Francci3_2464	PWY-6627	salinosporamide A biosynthesis
Francci3_2485	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Francci3_2492	PWY-3781	aerobic respiration I (cytochrome c)
Francci3_2492	PWY-4521	arsenite oxidation I (respiratory)
Francci3_2492	PWY-6692	Fe(II) oxidation
Francci3_2492	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Francci3_2493	PWY-3781	aerobic respiration I (cytochrome c)
Francci3_2493	PWY-4521	arsenite oxidation I (respiratory)
Francci3_2493	PWY-6692	Fe(II) oxidation
Francci3_2493	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Francci3_2511	PWY-6523	nitrite-dependent anaerobic methane oxidation
Francci3_2511	PWY-6748	nitrate reduction VII (denitrification)
Francci3_2511	PWY-7084	nitrifier denitrification
Francci3_2632	PWY-6829	tRNA methylation (yeast)
Francci3_2638	PWY-2201	folate transformations I
Francci3_2638	PWY-3841	folate transformations II
Francci3_2649	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Francci3_2649	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Francci3_2655	PWY-5747	2-methylcitrate cycle II
Francci3_2657	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
Francci3_2658	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Francci3_2658	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Francci3_2667	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Francci3_2667	PWY-2201	folate transformations I
Francci3_2667	PWY-3841	folate transformations II
Francci3_2667	PWY-5030	L-histidine degradation III
Francci3_2667	PWY-5497	purine nucleobases degradation II (anaerobic)
Francci3_2667	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Francci3_2671	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Francci3_2671	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Francci3_2781	PWY-5743	3-hydroxypropanoate cycle
Francci3_2781	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Francci3_2781	PWY-6728	methylaspartate cycle
Francci3_2781	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Francci3_2783	PWY-5451	acetone degradation I (to methylglyoxal)
Francci3_2783	PWY-6588	pyruvate fermentation to acetone
Francci3_2783	PWY-6876	isopropanol biosynthesis
Francci3_2783	PWY-7466	acetone degradation III (to propane-1,2-diol)
Francci3_2817	PWY-6854	ethylene biosynthesis III (microbes)
Francci3_2822	PWY-6853	ethylene biosynthesis II (microbes)
Francci3_2823	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
Francci3_2823	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Francci3_2830	PWY-5344	L-homocysteine biosynthesis
Francci3_2830	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Francci3_2831	PWY-5344	L-homocysteine biosynthesis
Francci3_2843	PWY-1042	glycolysis IV (plant cytosol)
Francci3_2843	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Francci3_2843	PWY-5484	glycolysis II (from fructose 6-phosphate)
Francci3_2843	PWY-7385	1,3-propanediol biosynthesis (engineered)
Francci3_2873	PWY-5298	L-lysine degradation VI
Francci3_2876	PWY-6854	ethylene biosynthesis III (microbes)
Francci3_2878	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Francci3_2878	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Francci3_2911	PWY-6840	homoglutathione biosynthesis
Francci3_2911	PWY-7255	ergothioneine biosynthesis I (bacteria)
Francci3_2928	PWY-4381	fatty acid biosynthesis initiation I
Francci3_2928	PWY-5743	3-hydroxypropanoate cycle
Francci3_2928	PWY-5744	glyoxylate assimilation
Francci3_2928	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Francci3_2928	PWY-6679	jadomycin biosynthesis
Francci3_2928	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Francci3_2929	PWY-4381	fatty acid biosynthesis initiation I
Francci3_2929	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Francci3_2929	PWY-723	alkylnitronates degradation
Francci3_2929	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Francci3_2930	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Francci3_2930	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Francci3_2930	PWY-5989	stearate biosynthesis II (bacteria and plants)
Francci3_2930	PWY-5994	palmitate biosynthesis I (animals and fungi)
Francci3_2930	PWY-6113	superpathway of mycolate biosynthesis
Francci3_2930	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Francci3_2930	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Francci3_2930	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Francci3_2930	PWYG-321	mycolate biosynthesis
Francci3_2949	PWY-5506	methanol oxidation to formaldehyde IV
Francci3_2950	PWY-5392	reductive TCA cycle II
Francci3_2950	PWY-5537	pyruvate fermentation to acetate V
Francci3_2950	PWY-5538	pyruvate fermentation to acetate VI
Francci3_2950	PWY-5690	TCA cycle II (plants and fungi)
Francci3_2950	PWY-5913	TCA cycle VI (obligate autotrophs)
Francci3_2950	PWY-6728	methylaspartate cycle
Francci3_2950	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Francci3_2950	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Francci3_2951	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Francci3_2980	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Francci3_2993	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Francci3_2993	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Francci3_3005	PWY-5743	3-hydroxypropanoate cycle
Francci3_3005	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Francci3_3005	PWY-6728	methylaspartate cycle
Francci3_3005	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Francci3_3006	PWY-5743	3-hydroxypropanoate cycle
Francci3_3006	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Francci3_3006	PWY-6728	methylaspartate cycle
Francci3_3006	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Francci3_3011	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Francci3_3020	PWY-5958	acridone alkaloid biosynthesis
Francci3_3020	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Francci3_3020	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Francci3_3057	PWY-6891	thiazole biosynthesis II (Bacillus)
Francci3_3057	PWY-6892	thiazole biosynthesis I (E. coli)
Francci3_3057	PWY-7560	methylerythritol phosphate pathway II
Francci3_3059	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Francci3_3059	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Francci3_3059	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Francci3_3068	PWY-5943	&beta;-carotene biosynthesis
Francci3_3068	PWY-5947	lutein biosynthesis
Francci3_3069	PWY-5943	&beta;-carotene biosynthesis
Francci3_3069	PWY-5947	lutein biosynthesis
Francci3_3070	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Francci3_3070	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Francci3_3070	PWY-6897	thiamin salvage II
Francci3_3070	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Francci3_3070	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Francci3_3070	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Francci3_3070	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Francci3_3075	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Francci3_3076	PWY-6891	thiazole biosynthesis II (Bacillus)
Francci3_3076	PWY-6892	thiazole biosynthesis I (E. coli)
Francci3_3084	PWY-6164	3-dehydroquinate biosynthesis I
Francci3_3085	PWY-1042	glycolysis IV (plant cytosol)
Francci3_3085	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Francci3_3085	PWY-5484	glycolysis II (from fructose 6-phosphate)
Francci3_3085	PWY-7385	1,3-propanediol biosynthesis (engineered)
Francci3_3092	PWY-2723	trehalose degradation V
Francci3_3092	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Francci3_3092	PWY-5661	GDP-glucose biosynthesis
Francci3_3092	PWY-7238	sucrose biosynthesis II
Francci3_3092	PWY-7385	1,3-propanediol biosynthesis (engineered)
Francci3_3115	PWY-3781	aerobic respiration I (cytochrome c)
Francci3_3115	PWY-4521	arsenite oxidation I (respiratory)
Francci3_3115	PWY-6692	Fe(II) oxidation
Francci3_3115	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Francci3_3116	PWY-3781	aerobic respiration I (cytochrome c)
Francci3_3116	PWY-4521	arsenite oxidation I (respiratory)
Francci3_3116	PWY-6692	Fe(II) oxidation
Francci3_3116	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Francci3_3118	PWY-6823	molybdenum cofactor biosynthesis
Francci3_3118	PWY-6891	thiazole biosynthesis II (Bacillus)
Francci3_3118	PWY-6892	thiazole biosynthesis I (E. coli)
Francci3_3118	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Francci3_3122	PWY-5316	nicotine biosynthesis
Francci3_3122	PWY-7342	superpathway of nicotine biosynthesis
Francci3_3129	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Francci3_3129	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Francci3_3129	PWY-6269	adenosylcobalamin salvage from cobinamide II
Francci3_3130	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Francci3_3130	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Francci3_3130	PWY-6269	adenosylcobalamin salvage from cobinamide II
Francci3_3131	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Francci3_3131	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Francci3_3131	PWY-6269	adenosylcobalamin salvage from cobinamide II
Francci3_3133	PWY-5988	wound-induced proteolysis I
Francci3_3133	PWY-6018	seed germination protein turnover
Francci3_3134	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Francci3_3134	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Francci3_3138	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Francci3_3138	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Francci3_3138	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Francci3_3142	PWY-381	nitrate reduction II (assimilatory)
Francci3_3142	PWY-5675	nitrate reduction V (assimilatory)
Francci3_3142	PWY-6549	L-glutamine biosynthesis III
Francci3_3142	PWY-6963	ammonia assimilation cycle I
Francci3_3142	PWY-6964	ammonia assimilation cycle II
Francci3_3143	PWY-381	nitrate reduction II (assimilatory)
Francci3_3143	PWY-5675	nitrate reduction V (assimilatory)
Francci3_3143	PWY-6549	L-glutamine biosynthesis III
Francci3_3143	PWY-6963	ammonia assimilation cycle I
Francci3_3143	PWY-6964	ammonia assimilation cycle II
Francci3_3145	PWY-381	nitrate reduction II (assimilatory)
Francci3_3145	PWY-5675	nitrate reduction V (assimilatory)
Francci3_3145	PWY-6549	L-glutamine biosynthesis III
Francci3_3145	PWY-6963	ammonia assimilation cycle I
Francci3_3145	PWY-6964	ammonia assimilation cycle II
Francci3_3146	PWY-5381	pyridine nucleotide cycling (plants)
Francci3_3146	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Francci3_3149	PWY-6654	phosphopantothenate biosynthesis III
Francci3_3157	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Francci3_3157	PWY-7177	UTP and CTP dephosphorylation II
Francci3_3157	PWY-7185	UTP and CTP dephosphorylation I
Francci3_3159	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Francci3_3159	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Francci3_3159	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Francci3_3168	PWY-4983	L-citrulline-nitric oxide cycle
Francci3_3168	PWY-4984	urea cycle
Francci3_3168	PWY-5	canavanine biosynthesis
Francci3_3168	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Francci3_3168	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Francci3_3169	PWY-4983	L-citrulline-nitric oxide cycle
Francci3_3169	PWY-4984	urea cycle
Francci3_3169	PWY-5	canavanine biosynthesis
Francci3_3169	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Francci3_3169	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Francci3_3171	PWY-4981	L-proline biosynthesis II (from arginine)
Francci3_3171	PWY-4984	urea cycle
Francci3_3171	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Francci3_3173	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Francci3_3173	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Francci3_3174	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Francci3_3175	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Francci3_3175	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Francci3_3185	PWY-6167	flavin biosynthesis II (archaea)
Francci3_3185	PWY-6168	flavin biosynthesis III (fungi)
Francci3_3186	PWY-6167	flavin biosynthesis II (archaea)
Francci3_3186	PWY-6168	flavin biosynthesis III (fungi)
Francci3_3186	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Francci3_3187	PWY-6167	flavin biosynthesis II (archaea)
Francci3_3187	PWY-6168	flavin biosynthesis III (fungi)
Francci3_3187	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Francci3_3188	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Francci3_3188	PWY-5723	Rubisco shunt
Francci3_3192	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Francci3_3192	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Francci3_3195	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Francci3_3197	PWY-5686	UMP biosynthesis
Francci3_3198	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Francci3_3198	PWY-5686	UMP biosynthesis
Francci3_3198	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Francci3_3199	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Francci3_3199	PWY-5686	UMP biosynthesis
Francci3_3199	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Francci3_3201	PWY-5686	UMP biosynthesis
Francci3_3202	PWY-5686	UMP biosynthesis
Francci3_3203	PWY-7183	pyrimidine nucleobases salvage I
Francci3_3207	PWY-6164	3-dehydroquinate biosynthesis I
Francci3_3208	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Francci3_3209	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Francci3_3211	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Francci3_3219	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Francci3_3245	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Francci3_3245	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Francci3_3245	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Francci3_3245	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Francci3_3259	PWY-7456	mannan degradation
Francci3_3378	PWY-6700	queuosine biosynthesis
Francci3_3379	PWY-6703	preQ<sub>0</sub> biosynthesis
Francci3_3380	PWY-6703	preQ<sub>0</sub> biosynthesis
Francci3_3383	PWY-6700	queuosine biosynthesis
Francci3_3441	PWY-1622	formaldehyde assimilation I (serine pathway)
Francci3_3441	PWY-5392	reductive TCA cycle II
Francci3_3441	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Francci3_3441	PWY-5690	TCA cycle II (plants and fungi)
Francci3_3441	PWY-5913	TCA cycle VI (obligate autotrophs)
Francci3_3441	PWY-6728	methylaspartate cycle
Francci3_3441	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Francci3_3441	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Francci3_3441	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Francci3_3451	PWY-3821	galactose degradation III
Francci3_3451	PWY-6317	galactose degradation I (Leloir pathway)
Francci3_3451	PWY-6527	stachyose degradation
Francci3_3452	PWY-6317	galactose degradation I (Leloir pathway)
Francci3_3452	PWY-6527	stachyose degradation
Francci3_3458	PWY-7456	mannan degradation
Francci3_3466	PWY-3781	aerobic respiration I (cytochrome c)
Francci3_3466	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Francci3_3466	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Francci3_3466	PWY-5690	TCA cycle II (plants and fungi)
Francci3_3466	PWY-6728	methylaspartate cycle
Francci3_3466	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Francci3_3466	PWY-7254	TCA cycle VII (acetate-producers)
Francci3_3466	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Francci3_3467	PWY-3781	aerobic respiration I (cytochrome c)
Francci3_3467	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Francci3_3467	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Francci3_3467	PWY-5690	TCA cycle II (plants and fungi)
Francci3_3467	PWY-6728	methylaspartate cycle
Francci3_3467	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Francci3_3467	PWY-7254	TCA cycle VII (acetate-producers)
Francci3_3467	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Francci3_3482	PWY-4381	fatty acid biosynthesis initiation I
Francci3_3485	PWY-4381	fatty acid biosynthesis initiation I
Francci3_3485	PWY-5743	3-hydroxypropanoate cycle
Francci3_3485	PWY-5744	glyoxylate assimilation
Francci3_3485	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Francci3_3485	PWY-6679	jadomycin biosynthesis
Francci3_3485	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Francci3_3491	PWY-6823	molybdenum cofactor biosynthesis
Francci3_3502	PWY-5392	reductive TCA cycle II
Francci3_3502	PWY-5537	pyruvate fermentation to acetate V
Francci3_3502	PWY-5538	pyruvate fermentation to acetate VI
Francci3_3502	PWY-5690	TCA cycle II (plants and fungi)
Francci3_3502	PWY-5913	TCA cycle VI (obligate autotrophs)
Francci3_3502	PWY-6728	methylaspartate cycle
Francci3_3502	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Francci3_3502	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Francci3_3507	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Francci3_3507	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Francci3_3507	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Francci3_3507	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Francci3_3507	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Francci3_3507	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Francci3_3507	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Francci3_3507	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Francci3_3514	PWY-2941	L-lysine biosynthesis II
Francci3_3514	PWY-5097	L-lysine biosynthesis VI
Francci3_3516	PWY-2781	<i>cis</i>-zeatin biosynthesis
Francci3_3544	PWY-2941	L-lysine biosynthesis II
Francci3_3544	PWY-2942	L-lysine biosynthesis III
Francci3_3544	PWY-5097	L-lysine biosynthesis VI
Francci3_3545	PWY-5482	pyruvate fermentation to acetate II
Francci3_3545	PWY-5485	pyruvate fermentation to acetate IV
Francci3_3545	PWY-5497	purine nucleobases degradation II (anaerobic)
Francci3_3547	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Francci3_3549	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Francci3_3550	PWY-3821	galactose degradation III
Francci3_3550	PWY-6317	galactose degradation I (Leloir pathway)
Francci3_3550	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Francci3_3550	PWY-6527	stachyose degradation
Francci3_3550	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Francci3_3550	PWY-7344	UDP-D-galactose biosynthesis
Francci3_3553	PWY-2941	L-lysine biosynthesis II
Francci3_3553	PWY-2942	L-lysine biosynthesis III
Francci3_3553	PWY-5097	L-lysine biosynthesis VI
Francci3_3557	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Francci3_3557	PWY-6167	flavin biosynthesis II (archaea)
Francci3_3557	PWY-6168	flavin biosynthesis III (fungi)
Francci3_3573	PWY-7560	methylerythritol phosphate pathway II
Francci3_3575	PWY-7560	methylerythritol phosphate pathway II
Francci3_3591	PWY-6829	tRNA methylation (yeast)
Francci3_3591	PWY-7285	methylwyosine biosynthesis
Francci3_3591	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Francci3_3609	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Francci3_3609	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Francci3_3612	PWY-6910	hydroxymethylpyrimidine salvage
Francci3_3612	PWY-7356	thiamin salvage IV (yeast)
Francci3_3612	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Francci3_3613	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Francci3_3613	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Francci3_3614	PWY-5667	CDP-diacylglycerol biosynthesis I
Francci3_3614	PWY-5981	CDP-diacylglycerol biosynthesis III
Francci3_3616	PWY-5198	factor 420 biosynthesis
Francci3_3628	PWY-5101	L-isoleucine biosynthesis II
Francci3_3628	PWY-6871	3-methylbutanol biosynthesis
Francci3_3631	PWY-5057	L-valine degradation II
Francci3_3631	PWY-5076	L-leucine degradation III
Francci3_3631	PWY-5078	L-isoleucine degradation II
Francci3_3631	PWY-5101	L-isoleucine biosynthesis II
Francci3_3631	PWY-5103	L-isoleucine biosynthesis III
Francci3_3631	PWY-5104	L-isoleucine biosynthesis IV
Francci3_3631	PWY-5108	L-isoleucine biosynthesis V
Francci3_3632	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Francci3_3635	PWY-6871	3-methylbutanol biosynthesis
Francci3_3638	PWY-5101	L-isoleucine biosynthesis II
Francci3_3638	PWY-5103	L-isoleucine biosynthesis III
Francci3_3638	PWY-5104	L-isoleucine biosynthesis IV
Francci3_3638	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Francci3_3639	PWY-5101	L-isoleucine biosynthesis II
Francci3_3639	PWY-5103	L-isoleucine biosynthesis III
Francci3_3639	PWY-5104	L-isoleucine biosynthesis IV
Francci3_3639	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Francci3_3639	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Francci3_3639	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Francci3_3639	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Francci3_3640	PWY-5101	L-isoleucine biosynthesis II
Francci3_3640	PWY-5103	L-isoleucine biosynthesis III
Francci3_3640	PWY-5104	L-isoleucine biosynthesis IV
Francci3_3640	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Francci3_3640	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Francci3_3640	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Francci3_3640	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Francci3_3644	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Francci3_3652	PWY-5743	3-hydroxypropanoate cycle
Francci3_3652	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Francci3_3652	PWY-6728	methylaspartate cycle
Francci3_3652	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Francci3_3663	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Francci3_3663	PWY-7118	chitin degradation to ethanol
Francci3_3664	PWY-5941	glycogen degradation II (eukaryotic)
Francci3_3664	PWY-622	starch biosynthesis
Francci3_3664	PWY-6731	starch degradation III
Francci3_3664	PWY-6737	starch degradation V
Francci3_3664	PWY-7238	sucrose biosynthesis II
Francci3_3671	PWY-7456	mannan degradation
Francci3_3679	PWY-2622	trehalose biosynthesis IV
Francci3_3681	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
Francci3_3681	PWY-622	starch biosynthesis
Francci3_3694	PWY-1361	benzoyl-CoA degradation I (aerobic)
Francci3_3694	PWY-5109	2-methylbutanoate biosynthesis
Francci3_3694	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Francci3_3694	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Francci3_3694	PWY-5177	glutaryl-CoA degradation
Francci3_3694	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Francci3_3694	PWY-6435	4-hydroxybenzoate biosynthesis V
Francci3_3694	PWY-6583	pyruvate fermentation to butanol I
Francci3_3694	PWY-6863	pyruvate fermentation to hexanol
Francci3_3694	PWY-6883	pyruvate fermentation to butanol II
Francci3_3694	PWY-6944	androstenedione degradation
Francci3_3694	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Francci3_3694	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Francci3_3694	PWY-7007	methyl ketone biosynthesis
Francci3_3694	PWY-7046	4-coumarate degradation (anaerobic)
Francci3_3694	PWY-7094	fatty acid salvage
Francci3_3694	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Francci3_3694	PWY-735	jasmonic acid biosynthesis
Francci3_3694	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Francci3_3700	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Francci3_3700	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Francci3_3704	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Francci3_3704	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Francci3_3704	PWY-6268	adenosylcobalamin salvage from cobalamin
Francci3_3704	PWY-6269	adenosylcobalamin salvage from cobinamide II
Francci3_3707	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Francci3_3709	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Francci3_3716	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Francci3_3716	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Francci3_3716	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Francci3_3717	PWY-1622	formaldehyde assimilation I (serine pathway)
Francci3_3717	PWY-181	photorespiration
Francci3_3717	PWY-2161	folate polyglutamylation
Francci3_3717	PWY-2201	folate transformations I
Francci3_3717	PWY-3661	glycine betaine degradation I
Francci3_3717	PWY-3661-1	glycine betaine degradation II (mammalian)
Francci3_3717	PWY-3841	folate transformations II
Francci3_3717	PWY-5497	purine nucleobases degradation II (anaerobic)
Francci3_3722	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Francci3_3723	PWY-702	L-methionine biosynthesis II
Francci3_3726	PWY-2941	L-lysine biosynthesis II
Francci3_3726	PWY-2942	L-lysine biosynthesis III
Francci3_3726	PWY-5097	L-lysine biosynthesis VI
Francci3_3747	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Francci3_3747	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Francci3_3747	PWY-6896	thiamin salvage I
Francci3_3747	PWY-6897	thiamin salvage II
Francci3_3748	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Francci3_3762	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Francci3_3763	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Francci3_3771	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Francci3_3785	PWY-6823	molybdenum cofactor biosynthesis
Francci3_3815	PWY-3461	L-tyrosine biosynthesis II
Francci3_3815	PWY-3462	L-phenylalanine biosynthesis II
Francci3_3815	PWY-6120	L-tyrosine biosynthesis III
Francci3_3815	PWY-6627	salinosporamide A biosynthesis
Francci3_3821	PWY-3781	aerobic respiration I (cytochrome c)
Francci3_3821	PWY-4521	arsenite oxidation I (respiratory)
Francci3_3821	PWY-6692	Fe(II) oxidation
Francci3_3821	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Francci3_3836	PWY-5988	wound-induced proteolysis I
Francci3_3836	PWY-6018	seed germination protein turnover
Francci3_3839	PWY-6614	tetrahydrofolate biosynthesis
Francci3_3842	PWY-6936	seleno-amino acid biosynthesis
Francci3_3842	PWY-7274	D-cycloserine biosynthesis
Francci3_3867	PWY-7158	L-phenylalanine degradation V
Francci3_3876	PWY-5484	glycolysis II (from fructose 6-phosphate)
Francci3_3881	PWY-7560	methylerythritol phosphate pathway II
Francci3_3882	PWY-5392	reductive TCA cycle II
Francci3_3882	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Francci3_3882	PWY-5690	TCA cycle II (plants and fungi)
Francci3_3882	PWY-5913	TCA cycle VI (obligate autotrophs)
Francci3_3882	PWY-6728	methylaspartate cycle
Francci3_3882	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Francci3_3882	PWY-7254	TCA cycle VII (acetate-producers)
Francci3_3882	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Francci3_3887	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Francci3_3897	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Francci3_3915	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Francci3_3915	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Francci3_3923	PWY-1042	glycolysis IV (plant cytosol)
Francci3_3923	PWY-1622	formaldehyde assimilation I (serine pathway)
Francci3_3923	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Francci3_3923	PWY-5484	glycolysis II (from fructose 6-phosphate)
Francci3_3923	PWY-5723	Rubisco shunt
Francci3_3923	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Francci3_3923	PWY-6886	1-butanol autotrophic biosynthesis
Francci3_3923	PWY-6901	superpathway of glucose and xylose degradation
Francci3_3923	PWY-7003	glycerol degradation to butanol
Francci3_3923	PWY-7124	ethylene biosynthesis V (engineered)
Francci3_3923	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Francci3_3929	PWY-7456	mannan degradation
Francci3_3930	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
Francci3_3930	PWY-5940	streptomycin biosynthesis
Francci3_3932	PWY-7560	methylerythritol phosphate pathway II
Francci3_3958	PWY-7560	methylerythritol phosphate pathway II
Francci3_3961	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Francci3_4022	PWY-1042	glycolysis IV (plant cytosol)
Francci3_4022	PWY-5484	glycolysis II (from fructose 6-phosphate)
Francci3_4022	PWY-6901	superpathway of glucose and xylose degradation
Francci3_4022	PWY-7003	glycerol degradation to butanol
Francci3_4034	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Francci3_4034	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Francci3_4039	PWY-6823	molybdenum cofactor biosynthesis
Francci3_4054	PWY-6409	pyoverdine I biosynthesis
Francci3_4054	PWY-6562	norspermidine biosynthesis
Francci3_4054	PWY-761	rhizobactin 1021 biosynthesis
Francci3_4059	PWY-381	nitrate reduction II (assimilatory)
Francci3_4059	PWY-5675	nitrate reduction V (assimilatory)
Francci3_4059	PWY-6549	L-glutamine biosynthesis III
Francci3_4059	PWY-6963	ammonia assimilation cycle I
Francci3_4059	PWY-6964	ammonia assimilation cycle II
Francci3_4089	PWY-7158	L-phenylalanine degradation V
Francci3_4092	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Francci3_4139	PWY-1361	benzoyl-CoA degradation I (aerobic)
Francci3_4139	PWY-5109	2-methylbutanoate biosynthesis
Francci3_4139	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Francci3_4139	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Francci3_4139	PWY-5177	glutaryl-CoA degradation
Francci3_4139	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Francci3_4139	PWY-6435	4-hydroxybenzoate biosynthesis V
Francci3_4139	PWY-6583	pyruvate fermentation to butanol I
Francci3_4139	PWY-6863	pyruvate fermentation to hexanol
Francci3_4139	PWY-6883	pyruvate fermentation to butanol II
Francci3_4139	PWY-6944	androstenedione degradation
Francci3_4139	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Francci3_4139	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Francci3_4139	PWY-7007	methyl ketone biosynthesis
Francci3_4139	PWY-7046	4-coumarate degradation (anaerobic)
Francci3_4139	PWY-7094	fatty acid salvage
Francci3_4139	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Francci3_4139	PWY-735	jasmonic acid biosynthesis
Francci3_4139	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Francci3_4170	PWY-5147	oleate biosynthesis I (plants)
Francci3_4178	PWY-5670	epoxysqualene biosynthesis
Francci3_4178	PWY-6098	diploterol and cycloartenol biosynthesis
Francci3_4187	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Francci3_4188	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
Francci3_4188	PWY-6174	mevalonate pathway II (archaea)
Francci3_4188	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
Francci3_4188	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
Francci3_4188	PWY-7102	bisabolene biosynthesis
Francci3_4188	PWY-7391	isoprene biosynthesis II (engineered)
Francci3_4188	PWY-7524	mevalonate pathway III (archaea)
Francci3_4188	PWY-7560	methylerythritol phosphate pathway II
Francci3_4188	PWY-922	mevalonate pathway I
Francci3_4206	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
Francci3_4252	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Francci3_4252	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Francci3_4253	PWY-7560	methylerythritol phosphate pathway II
Francci3_4254	PWY-7560	methylerythritol phosphate pathway II
Francci3_4306	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Francci3_4306	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Francci3_4306	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Francci3_4306	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Francci3_4306	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Francci3_4306	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Francci3_4311	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Francci3_4311	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Francci3_4313	PWY-6599	guanine and guanosine salvage II
Francci3_4313	PWY-6609	adenine and adenosine salvage III
Francci3_4313	PWY-6610	adenine and adenosine salvage IV
Francci3_4313	PWY-6620	guanine and guanosine salvage
Francci3_4315	PWY-5663	tetrahydrobiopterin biosynthesis I
Francci3_4315	PWY-5664	tetrahydrobiopterin biosynthesis II
Francci3_4315	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Francci3_4315	PWY-6703	preQ<sub>0</sub> biosynthesis
Francci3_4315	PWY-6983	tetrahydrobiopterin biosynthesis III
Francci3_4315	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Francci3_4349	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Francci3_4364	PWY-1042	glycolysis IV (plant cytosol)
Francci3_4364	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Francci3_4364	PWY-5484	glycolysis II (from fructose 6-phosphate)
Francci3_4364	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Francci3_4364	PWY-7385	1,3-propanediol biosynthesis (engineered)
Francci3_4368	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Francci3_4370	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Francci3_4370	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Francci3_4370	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Francci3_4371	PWY-6123	inosine-5'-phosphate biosynthesis I
Francci3_4371	PWY-7234	inosine-5'-phosphate biosynthesis III
Francci3_4372	PWY-6123	inosine-5'-phosphate biosynthesis I
Francci3_4372	PWY-6124	inosine-5'-phosphate biosynthesis II
Francci3_4372	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Francci3_4372	PWY-7234	inosine-5'-phosphate biosynthesis III
Francci3_4373	PWY-6123	inosine-5'-phosphate biosynthesis I
Francci3_4373	PWY-6124	inosine-5'-phosphate biosynthesis II
Francci3_4373	PWY-7234	inosine-5'-phosphate biosynthesis III
Francci3_4376	PWY-5155	&beta;-alanine biosynthesis III
Francci3_4377	PWY-5316	nicotine biosynthesis
Francci3_4377	PWY-7342	superpathway of nicotine biosynthesis
Francci3_4378	PWY-5316	nicotine biosynthesis
Francci3_4378	PWY-5381	pyridine nucleotide cycling (plants)
Francci3_4378	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Francci3_4378	PWY-7342	superpathway of nicotine biosynthesis
Francci3_4379	PWY-3961	phosphopantothenate biosynthesis II
Francci3_4405	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Francci3_4405	PWY-6148	tetrahydromethanopterin biosynthesis
Francci3_4405	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Francci3_4405	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Francci3_4406	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Francci3_4406	PWY-6148	tetrahydromethanopterin biosynthesis
Francci3_4406	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Francci3_4406	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Francci3_4407	PWY-6614	tetrahydrofolate biosynthesis
Francci3_4416	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Francci3_4416	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Francci3_4416	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Francci3_4417	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Francci3_4417	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Francci3_4417	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Francci3_4421	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
Francci3_4429	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Francci3_4429	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Francci3_4429	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Francci3_4437	PWY-5958	acridone alkaloid biosynthesis
Francci3_4437	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Francci3_4437	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Francci3_4454	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Francci3_4475	PWY-6823	molybdenum cofactor biosynthesis
Francci3_4475	PWY-6891	thiazole biosynthesis II (Bacillus)
Francci3_4475	PWY-6892	thiazole biosynthesis I (E. coli)
Francci3_4475	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Francci3_4478	PWY-6823	molybdenum cofactor biosynthesis
Francci3_4489	PWY-3081	L-lysine biosynthesis V
Francci3_4489	PWY-6871	3-methylbutanol biosynthesis
Francci3_4511	PWY-6840	homoglutathione biosynthesis
Francci3_4511	PWY-7255	ergothioneine biosynthesis I (bacteria)
Francci3_4515	PWY-5101	L-isoleucine biosynthesis II
Francci3_4515	PWY-5103	L-isoleucine biosynthesis III
Francci3_4515	PWY-5104	L-isoleucine biosynthesis IV
Francci3_4515	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Francci3_4529	PWY-2301	<i>myo</i>-inositol biosynthesis
Francci3_4529	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
Francci3_4529	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
Francci3_4529	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
Francci3_4529	PWY-6664	di-myo-inositol phosphate biosynthesis