HCH_00016	PWY-5392	reductive TCA cycle II
HCH_00016	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
HCH_00016	PWY-5690	TCA cycle II (plants and fungi)
HCH_00016	PWY-5913	TCA cycle VI (obligate autotrophs)
HCH_00016	PWY-6728	methylaspartate cycle
HCH_00016	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
HCH_00016	PWY-7254	TCA cycle VII (acetate-producers)
HCH_00016	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
HCH_00036	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
HCH_00036	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
HCH_00037	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
HCH_00048	PWY-3781	aerobic respiration I (cytochrome c)
HCH_00048	PWY-4521	arsenite oxidation I (respiratory)
HCH_00048	PWY-6692	Fe(II) oxidation
HCH_00048	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
HCH_00070	PWY-4061	glutathione-mediated detoxification I
HCH_00070	PWY-6842	glutathione-mediated detoxification II
HCH_00070	PWY-7112	4-hydroxy-2-nonenal detoxification
HCH_00070	PWY-7533	gliotoxin biosynthesis
HCH_00085	PWY-6788	cellulose degradation II (fungi)
HCH_00098	PWY-7193	pyrimidine ribonucleosides salvage I
HCH_00107	PWY-5382	hydrogen oxidation II (aerobic, NAD)
HCH_00107	PWY-6758	hydrogen production II
HCH_00137	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
HCH_00140	PWY-6891	thiazole biosynthesis II (Bacillus)
HCH_00140	PWY-6892	thiazole biosynthesis I (E. coli)
HCH_00141	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
HCH_00141	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
HCH_00141	PWY-6897	thiamin salvage II
HCH_00141	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
HCH_00141	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
HCH_00141	PWY-6910	hydroxymethylpyrimidine salvage
HCH_00141	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
HCH_00141	PWY-7356	thiamin salvage IV (yeast)
HCH_00141	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
HCH_00239	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
HCH_00269	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
HCH_00271	PWY-5656	mannosylglycerate biosynthesis I
HCH_00275	PWY-1042	glycolysis IV (plant cytosol)
HCH_00275	PWY-5484	glycolysis II (from fructose 6-phosphate)
HCH_00275	PWY-6901	superpathway of glucose and xylose degradation
HCH_00275	PWY-7003	glycerol degradation to butanol
HCH_00285	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
HCH_00290	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
HCH_00290	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
HCH_00291	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
HCH_00291	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
HCH_00294	PWY-4983	L-citrulline-nitric oxide cycle
HCH_00294	PWY-4984	urea cycle
HCH_00294	PWY-5	canavanine biosynthesis
HCH_00294	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
HCH_00294	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
HCH_00297	PWY-2941	L-lysine biosynthesis II
HCH_00297	PWY-2942	L-lysine biosynthesis III
HCH_00297	PWY-5097	L-lysine biosynthesis VI
HCH_00298	PWY-2941	L-lysine biosynthesis II
HCH_00298	PWY-5097	L-lysine biosynthesis VI
HCH_00347	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
HCH_00348	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
HCH_00348	PWY-6855	chitin degradation I (archaea)
HCH_00348	PWY-6906	chitin derivatives degradation
HCH_00349	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
HCH_00349	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
HCH_00349	PWY-7242	D-fructuronate degradation
HCH_00349	PWY-7310	D-glucosaminate degradation
HCH_00352	PWY-6840	homoglutathione biosynthesis
HCH_00352	PWY-7255	ergothioneine biosynthesis I (bacteria)
HCH_00359	PWY-6825	phosphatidylcholine biosynthesis V
HCH_00431	PWY-1042	glycolysis IV (plant cytosol)
HCH_00431	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
HCH_00431	PWY-5484	glycolysis II (from fructose 6-phosphate)
HCH_00431	PWY-5723	Rubisco shunt
HCH_00431	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
HCH_00431	PWY-6886	1-butanol autotrophic biosynthesis
HCH_00431	PWY-6901	superpathway of glucose and xylose degradation
HCH_00431	PWY-7003	glycerol degradation to butanol
HCH_00431	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
HCH_00431	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
HCH_00432	PWY-1042	glycolysis IV (plant cytosol)
HCH_00432	PWY-5484	glycolysis II (from fructose 6-phosphate)
HCH_00432	PWY-6901	superpathway of glucose and xylose degradation
HCH_00432	PWY-7003	glycerol degradation to butanol
HCH_00433	PWY-5101	L-isoleucine biosynthesis II
HCH_00433	PWY-5103	L-isoleucine biosynthesis III
HCH_00433	PWY-5104	L-isoleucine biosynthesis IV
HCH_00433	PWY-7111	pyruvate fermentation to isobutanol (engineered)
HCH_00434	PWY-2723	trehalose degradation V
HCH_00434	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
HCH_00434	PWY-5661	GDP-glucose biosynthesis
HCH_00434	PWY-7238	sucrose biosynthesis II
HCH_00434	PWY-7385	1,3-propanediol biosynthesis (engineered)
HCH_00437	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
HCH_00437	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
HCH_00439	PWY-842	starch degradation I
HCH_00495	PWY-6654	phosphopantothenate biosynthesis III
HCH_00527	PWY-5663	tetrahydrobiopterin biosynthesis I
HCH_00527	PWY-5664	tetrahydrobiopterin biosynthesis II
HCH_00527	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
HCH_00527	PWY-6703	preQ<sub>0</sub> biosynthesis
HCH_00527	PWY-6983	tetrahydrobiopterin biosynthesis III
HCH_00527	PWY-7442	drosopterin and aurodrosopterin biosynthesis
HCH_00553	PWY-5686	UMP biosynthesis
HCH_00554	PWY-5686	UMP biosynthesis
HCH_00561	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
HCH_00561	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
HCH_00642	PWY-5642	2,4-dinitrotoluene degradation
HCH_00642	PWY-6373	acrylate degradation
HCH_00650	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
HCH_00650	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
HCH_00671	PWY-6012	acyl carrier protein metabolism I
HCH_00681	PWY-6902	chitin degradation II
HCH_00713	PWY-3781	aerobic respiration I (cytochrome c)
HCH_00713	PWY-4521	arsenite oxidation I (respiratory)
HCH_00713	PWY-6692	Fe(II) oxidation
HCH_00713	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
HCH_00731	PWY-381	nitrate reduction II (assimilatory)
HCH_00731	PWY-5675	nitrate reduction V (assimilatory)
HCH_00731	PWY-6549	L-glutamine biosynthesis III
HCH_00731	PWY-6963	ammonia assimilation cycle I
HCH_00731	PWY-6964	ammonia assimilation cycle II
HCH_00805	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
HCH_00805	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
HCH_00805	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
HCH_00805	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
HCH_00810	PWY-6654	phosphopantothenate biosynthesis III
HCH_00814	PWY-6807	xyloglucan degradation II (exoglucanase)
HCH_00850	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
HCH_00850	PWY-7494	choline degradation IV
HCH_00851	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
HCH_00851	PWY-7494	choline degradation IV
HCH_00869	PWY-6902	chitin degradation II
HCH_00873	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
HCH_00873	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
HCH_00916	PWY-6803	phosphatidylcholine acyl editing
HCH_00916	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
HCH_00916	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
HCH_00916	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
HCH_00917	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
HCH_00923	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
HCH_00956	PWY-6134	L-tyrosine biosynthesis IV
HCH_00956	PWY-7158	L-phenylalanine degradation V
HCH_00963	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
HCH_00963	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
HCH_00963	PWY-6269	adenosylcobalamin salvage from cobinamide II
HCH_00964	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
HCH_00964	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
HCH_00964	PWY-6269	adenosylcobalamin salvage from cobinamide II
HCH_00965	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
HCH_00965	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
HCH_00965	PWY-6269	adenosylcobalamin salvage from cobinamide II
HCH_00966	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
HCH_00966	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
HCH_00966	PWY-6269	adenosylcobalamin salvage from cobinamide II
HCH_00977	PWY-5451	acetone degradation I (to methylglyoxal)
HCH_00977	PWY-6588	pyruvate fermentation to acetone
HCH_00977	PWY-6876	isopropanol biosynthesis
HCH_00977	PWY-7466	acetone degradation III (to propane-1,2-diol)
HCH_01004	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
HCH_01004	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
HCH_01022	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
HCH_01022	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
HCH_01022	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
HCH_01022	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
HCH_01025	PWY-6749	CMP-legionaminate biosynthesis I
HCH_01027	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
HCH_01027	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
HCH_01029	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
HCH_01030	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
HCH_01036	PWY-381	nitrate reduction II (assimilatory)
HCH_01036	PWY-5675	nitrate reduction V (assimilatory)
HCH_01036	PWY-6549	L-glutamine biosynthesis III
HCH_01036	PWY-6963	ammonia assimilation cycle I
HCH_01036	PWY-6964	ammonia assimilation cycle II
HCH_01045	PWY-5057	L-valine degradation II
HCH_01045	PWY-5076	L-leucine degradation III
HCH_01045	PWY-5078	L-isoleucine degradation II
HCH_01045	PWY-5101	L-isoleucine biosynthesis II
HCH_01045	PWY-5103	L-isoleucine biosynthesis III
HCH_01045	PWY-5104	L-isoleucine biosynthesis IV
HCH_01045	PWY-5108	L-isoleucine biosynthesis V
HCH_01062	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
HCH_01062	PWY-5723	Rubisco shunt
HCH_01082	PWY-5839	menaquinol-7 biosynthesis
HCH_01082	PWY-5844	menaquinol-9 biosynthesis
HCH_01082	PWY-5849	menaquinol-6 biosynthesis
HCH_01082	PWY-5890	menaquinol-10 biosynthesis
HCH_01082	PWY-5891	menaquinol-11 biosynthesis
HCH_01082	PWY-5892	menaquinol-12 biosynthesis
HCH_01082	PWY-5895	menaquinol-13 biosynthesis
HCH_01088	PWY-7183	pyrimidine nucleobases salvage I
HCH_01091	PWY-5497	purine nucleobases degradation II (anaerobic)
HCH_01091	PWY-6606	guanosine nucleotides degradation II
HCH_01091	PWY-6608	guanosine nucleotides degradation III
HCH_01091	PWY-7442	drosopterin and aurodrosopterin biosynthesis
HCH_01092	PWY-5694	allantoin degradation to glyoxylate I
HCH_01092	PWY-5705	allantoin degradation to glyoxylate III
HCH_01093	PWY-5691	urate degradation to allantoin I
HCH_01093	PWY-7394	urate degradation to allantoin II
HCH_01094	PWY-5691	urate degradation to allantoin I
HCH_01094	PWY-7394	urate degradation to allantoin II
HCH_01095	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
HCH_01096	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
HCH_01096	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
HCH_01098	PWY-5497	purine nucleobases degradation II (anaerobic)
HCH_01098	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
HCH_01098	PWY-6538	caffeine degradation III (bacteria, via demethylation)
HCH_01098	PWY-6596	adenosine nucleotides degradation I
HCH_01098	PWY-6606	guanosine nucleotides degradation II
HCH_01098	PWY-6607	guanosine nucleotides degradation I
HCH_01098	PWY-6608	guanosine nucleotides degradation III
HCH_01098	PWY-6999	theophylline degradation
HCH_01099	PWY-5497	purine nucleobases degradation II (anaerobic)
HCH_01099	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
HCH_01099	PWY-6538	caffeine degradation III (bacteria, via demethylation)
HCH_01099	PWY-6596	adenosine nucleotides degradation I
HCH_01099	PWY-6606	guanosine nucleotides degradation II
HCH_01099	PWY-6607	guanosine nucleotides degradation I
HCH_01099	PWY-6608	guanosine nucleotides degradation III
HCH_01099	PWY-6999	theophylline degradation
HCH_01113	PWY-6803	phosphatidylcholine acyl editing
HCH_01113	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
HCH_01113	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
HCH_01113	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
HCH_01135	PWY-6902	chitin degradation II
HCH_01137	PWY-6902	chitin degradation II
HCH_01157	PWY-5642	2,4-dinitrotoluene degradation
HCH_01157	PWY-6373	acrylate degradation
HCH_01174	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
HCH_01174	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
HCH_01174	PWY-6936	seleno-amino acid biosynthesis
HCH_01174	PWY-702	L-methionine biosynthesis II
HCH_01226	PWY-2941	L-lysine biosynthesis II
HCH_01226	PWY-2942	L-lysine biosynthesis III
HCH_01226	PWY-5097	L-lysine biosynthesis VI
HCH_01227	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
HCH_01227	PWY-5686	UMP biosynthesis
HCH_01227	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
HCH_01228	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
HCH_01228	PWY-5686	UMP biosynthesis
HCH_01228	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
HCH_01233	PWY-6614	tetrahydrofolate biosynthesis
HCH_01234	PWY-6749	CMP-legionaminate biosynthesis I
HCH_01235	PWY-1042	glycolysis IV (plant cytosol)
HCH_01235	PWY-5484	glycolysis II (from fructose 6-phosphate)
HCH_01235	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
HCH_01235	PWY-7003	glycerol degradation to butanol
HCH_01266	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
HCH_01266	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
HCH_01272	PWY-6891	thiazole biosynthesis II (Bacillus)
HCH_01272	PWY-6892	thiazole biosynthesis I (E. coli)
HCH_01272	PWY-7560	methylerythritol phosphate pathway II
HCH_01352	PWY-1042	glycolysis IV (plant cytosol)
HCH_01352	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
HCH_01352	PWY-5484	glycolysis II (from fructose 6-phosphate)
HCH_01352	PWY-5723	Rubisco shunt
HCH_01352	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
HCH_01352	PWY-6886	1-butanol autotrophic biosynthesis
HCH_01352	PWY-6901	superpathway of glucose and xylose degradation
HCH_01352	PWY-7003	glycerol degradation to butanol
HCH_01352	PWY-7124	ethylene biosynthesis V (engineered)
HCH_01352	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
HCH_01388	PWY-6167	flavin biosynthesis II (archaea)
HCH_01388	PWY-6168	flavin biosynthesis III (fungi)
HCH_01392	PWY-6019	pseudouridine degradation
HCH_01403	PWY-6807	xyloglucan degradation II (exoglucanase)
HCH_01412	PWY-6823	molybdenum cofactor biosynthesis
HCH_01412	PWY-6891	thiazole biosynthesis II (Bacillus)
HCH_01412	PWY-6892	thiazole biosynthesis I (E. coli)
HCH_01412	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
HCH_01446	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
HCH_01446	PWY-3162	L-tryptophan degradation V (side chain pathway)
HCH_01446	PWY-5057	L-valine degradation II
HCH_01446	PWY-5076	L-leucine degradation III
HCH_01446	PWY-5078	L-isoleucine degradation II
HCH_01446	PWY-5079	L-phenylalanine degradation III
HCH_01446	PWY-5082	L-methionine degradation III
HCH_01446	PWY-5480	pyruvate fermentation to ethanol I
HCH_01446	PWY-5486	pyruvate fermentation to ethanol II
HCH_01446	PWY-5751	phenylethanol biosynthesis
HCH_01446	PWY-6028	acetoin degradation
HCH_01446	PWY-6313	serotonin degradation
HCH_01446	PWY-6333	acetaldehyde biosynthesis I
HCH_01446	PWY-6342	noradrenaline and adrenaline degradation
HCH_01446	PWY-6587	pyruvate fermentation to ethanol III
HCH_01446	PWY-6802	salidroside biosynthesis
HCH_01446	PWY-6871	3-methylbutanol biosynthesis
HCH_01446	PWY-7013	L-1,2-propanediol degradation
HCH_01446	PWY-7111	pyruvate fermentation to isobutanol (engineered)
HCH_01446	PWY-7118	chitin degradation to ethanol
HCH_01446	PWY-7396	butanol and isobutanol biosynthesis (engineered)
HCH_01446	PWY-7557	dehydrodiconiferyl alcohol degradation
HCH_01447	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
HCH_01448	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
HCH_01503	PWY-6610	adenine and adenosine salvage IV
HCH_01509	PWY-6409	pyoverdine I biosynthesis
HCH_01509	PWY-6562	norspermidine biosynthesis
HCH_01509	PWY-761	rhizobactin 1021 biosynthesis
HCH_01516	PWY-7181	pyrimidine deoxyribonucleosides degradation
HCH_01531	PWY-2201	folate transformations I
HCH_01531	PWY-3841	folate transformations II
HCH_01532	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
HCH_01533	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
HCH_01533	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
HCH_01535	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
HCH_01535	PWY-5723	Rubisco shunt
HCH_01535	PWY-6891	thiazole biosynthesis II (Bacillus)
HCH_01535	PWY-6892	thiazole biosynthesis I (E. coli)
HCH_01535	PWY-6901	superpathway of glucose and xylose degradation
HCH_01535	PWY-7560	methylerythritol phosphate pathway II
HCH_01536	PWY-1042	glycolysis IV (plant cytosol)
HCH_01536	PWY-5484	glycolysis II (from fructose 6-phosphate)
HCH_01536	PWY-6901	superpathway of glucose and xylose degradation
HCH_01536	PWY-7003	glycerol degradation to butanol
HCH_01537	PWY-1042	glycolysis IV (plant cytosol)
HCH_01537	PWY-5484	glycolysis II (from fructose 6-phosphate)
HCH_01537	PWY-6886	1-butanol autotrophic biosynthesis
HCH_01537	PWY-6901	superpathway of glucose and xylose degradation
HCH_01537	PWY-7003	glycerol degradation to butanol
HCH_01538	PWY-1042	glycolysis IV (plant cytosol)
HCH_01538	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
HCH_01538	PWY-5484	glycolysis II (from fructose 6-phosphate)
HCH_01538	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
HCH_01538	PWY-7385	1,3-propanediol biosynthesis (engineered)
HCH_01555	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
HCH_01555	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
HCH_01560	PWY-6902	chitin degradation II
HCH_01561	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
HCH_01647	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
HCH_01647	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
HCH_01653	PWY-6728	methylaspartate cycle
HCH_01653	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
HCH_01653	PWY-7118	chitin degradation to ethanol
HCH_01653	PWY-7294	xylose degradation IV
HCH_01653	PWY-7295	L-arabinose degradation IV
HCH_01667	PWY-6012	acyl carrier protein metabolism I
HCH_01667	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
HCH_01673	PWY-6902	chitin degradation II
HCH_01704	PWY-5686	UMP biosynthesis
HCH_01706	PWY-5663	tetrahydrobiopterin biosynthesis I
HCH_01706	PWY-5664	tetrahydrobiopterin biosynthesis II
HCH_01706	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
HCH_01706	PWY-6703	preQ<sub>0</sub> biosynthesis
HCH_01706	PWY-6983	tetrahydrobiopterin biosynthesis III
HCH_01706	PWY-7442	drosopterin and aurodrosopterin biosynthesis
HCH_01715	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
HCH_01727	PWY-7560	methylerythritol phosphate pathway II
HCH_01731	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
HCH_01762	PWY-4981	L-proline biosynthesis II (from arginine)
HCH_01762	PWY-4984	urea cycle
HCH_01762	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
HCH_01774	PWY-6829	tRNA methylation (yeast)
HCH_01774	PWY-7285	methylwyosine biosynthesis
HCH_01774	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
HCH_01789	PWY-5316	nicotine biosynthesis
HCH_01789	PWY-7342	superpathway of nicotine biosynthesis
HCH_01805	PWY-6936	seleno-amino acid biosynthesis
HCH_01811	PWY-1622	formaldehyde assimilation I (serine pathway)
HCH_01811	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
HCH_01811	PWY-5913	TCA cycle VI (obligate autotrophs)
HCH_01811	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
HCH_01811	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
HCH_01811	PWY-6549	L-glutamine biosynthesis III
HCH_01811	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
HCH_01811	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
HCH_01811	PWY-7124	ethylene biosynthesis V (engineered)
HCH_01814	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
HCH_01824	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
HCH_01824	PWY-6853	ethylene biosynthesis II (microbes)
HCH_01824	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
HCH_01841	PWY-5392	reductive TCA cycle II
HCH_01841	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
HCH_01841	PWY-5690	TCA cycle II (plants and fungi)
HCH_01841	PWY-5913	TCA cycle VI (obligate autotrophs)
HCH_01841	PWY-6728	methylaspartate cycle
HCH_01841	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
HCH_01841	PWY-7254	TCA cycle VII (acetate-producers)
HCH_01841	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
HCH_01844	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
HCH_01845	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
HCH_01845	PWY-5389	3-methylthiopropanoate biosynthesis
HCH_01857	PWY-6785	hydrogen production VIII
HCH_01858	PWY-4202	arsenate detoxification I (glutaredoxin)
HCH_01858	PWY-4621	arsenate detoxification II (glutaredoxin)
HCH_01862	PWY-4381	fatty acid biosynthesis initiation I
HCH_01862	PWY-5743	3-hydroxypropanoate cycle
HCH_01862	PWY-5744	glyoxylate assimilation
HCH_01862	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
HCH_01862	PWY-6679	jadomycin biosynthesis
HCH_01862	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
HCH_01865	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
HCH_01865	PWY-7177	UTP and CTP dephosphorylation II
HCH_01865	PWY-7185	UTP and CTP dephosphorylation I
HCH_01866	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
HCH_01866	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
HCH_01867	PWY-1042	glycolysis IV (plant cytosol)
HCH_01867	PWY-1622	formaldehyde assimilation I (serine pathway)
HCH_01867	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
HCH_01867	PWY-5484	glycolysis II (from fructose 6-phosphate)
HCH_01867	PWY-5723	Rubisco shunt
HCH_01867	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
HCH_01867	PWY-6886	1-butanol autotrophic biosynthesis
HCH_01867	PWY-6901	superpathway of glucose and xylose degradation
HCH_01867	PWY-7003	glycerol degradation to butanol
HCH_01867	PWY-7124	ethylene biosynthesis V (engineered)
HCH_01867	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
HCH_01869	PWY-7560	methylerythritol phosphate pathway II
HCH_01870	PWY-7560	methylerythritol phosphate pathway II
HCH_01872	PWY-5381	pyridine nucleotide cycling (plants)
HCH_01872	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
HCH_01872	PWY-6596	adenosine nucleotides degradation I
HCH_01872	PWY-6606	guanosine nucleotides degradation II
HCH_01872	PWY-6607	guanosine nucleotides degradation I
HCH_01872	PWY-6608	guanosine nucleotides degradation III
HCH_01872	PWY-7185	UTP and CTP dephosphorylation I
HCH_01900	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
HCH_01905	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
HCH_01905	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
HCH_01906	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
HCH_01906	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
HCH_01906	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
HCH_01908	PWY-5269	cardiolipin biosynthesis II
HCH_01908	PWY-5668	cardiolipin biosynthesis I
HCH_01917	PWY-5316	nicotine biosynthesis
HCH_01917	PWY-5381	pyridine nucleotide cycling (plants)
HCH_01917	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
HCH_01917	PWY-7342	superpathway of nicotine biosynthesis
HCH_01926	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
HCH_01926	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
HCH_01926	PWY-6268	adenosylcobalamin salvage from cobalamin
HCH_01926	PWY-6269	adenosylcobalamin salvage from cobinamide II
HCH_01927	PWY-6654	phosphopantothenate biosynthesis III
HCH_01931	PWY-5988	wound-induced proteolysis I
HCH_01931	PWY-6018	seed germination protein turnover
HCH_01942	PWY-7533	gliotoxin biosynthesis
HCH_01978	PWY-1622	formaldehyde assimilation I (serine pathway)
HCH_01978	PWY-5392	reductive TCA cycle II
HCH_01978	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
HCH_01978	PWY-5690	TCA cycle II (plants and fungi)
HCH_01978	PWY-5913	TCA cycle VI (obligate autotrophs)
HCH_01978	PWY-6728	methylaspartate cycle
HCH_01978	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
HCH_01978	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
HCH_01978	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
HCH_02054	PWY-2723	trehalose degradation V
HCH_02054	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
HCH_02054	PWY-5661	GDP-glucose biosynthesis
HCH_02054	PWY-5940	streptomycin biosynthesis
HCH_02054	PWY-621	sucrose degradation III (sucrose invertase)
HCH_02054	PWY-622	starch biosynthesis
HCH_02054	PWY-6731	starch degradation III
HCH_02054	PWY-6737	starch degradation V
HCH_02054	PWY-6981	chitin biosynthesis
HCH_02054	PWY-7238	sucrose biosynthesis II
HCH_02054	PWY-7343	UDP-glucose biosynthesis
HCH_02111	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
HCH_02123	PWY-5484	glycolysis II (from fructose 6-phosphate)
HCH_02143	PWY-4381	fatty acid biosynthesis initiation I
HCH_02143	PWY-6799	fatty acid biosynthesis (plant mitochondria)
HCH_02143	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
HCH_02144	PWY-5367	petroselinate biosynthesis
HCH_02144	PWY-5971	palmitate biosynthesis II (bacteria and plants)
HCH_02144	PWY-5973	<i>cis</i>-vaccenate biosynthesis
HCH_02144	PWY-5989	stearate biosynthesis II (bacteria and plants)
HCH_02144	PWY-5994	palmitate biosynthesis I (animals and fungi)
HCH_02144	PWY-6113	superpathway of mycolate biosynthesis
HCH_02144	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
HCH_02144	PWY-6519	8-amino-7-oxononanoate biosynthesis I
HCH_02144	PWY-6951	HCH_02144
HCH_02144	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
HCH_02144	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
HCH_02144	PWYG-321	mycolate biosynthesis
HCH_02146	PWY-6543	4-aminobenzoate biosynthesis
HCH_02146	PWY-6722	candicidin biosynthesis
HCH_02148	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
HCH_02148	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
HCH_02148	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
HCH_02148	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
HCH_02148	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
HCH_02148	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
HCH_02149	PWY-5747	2-methylcitrate cycle II
HCH_02153	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
HCH_02155	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
HCH_02155	PWY-2201	folate transformations I
HCH_02155	PWY-3841	folate transformations II
HCH_02155	PWY-5030	L-histidine degradation III
HCH_02155	PWY-5497	purine nucleobases degradation II (anaerobic)
HCH_02155	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
HCH_02185	PWY-1361	benzoyl-CoA degradation I (aerobic)
HCH_02185	PWY-5109	2-methylbutanoate biosynthesis
HCH_02185	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
HCH_02185	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
HCH_02185	PWY-5177	glutaryl-CoA degradation
HCH_02185	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
HCH_02185	PWY-6435	4-hydroxybenzoate biosynthesis V
HCH_02185	PWY-6583	pyruvate fermentation to butanol I
HCH_02185	PWY-6863	pyruvate fermentation to hexanol
HCH_02185	PWY-6883	pyruvate fermentation to butanol II
HCH_02185	PWY-6944	androstenedione degradation
HCH_02185	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
HCH_02185	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
HCH_02185	PWY-7007	methyl ketone biosynthesis
HCH_02185	PWY-7046	4-coumarate degradation (anaerobic)
HCH_02185	PWY-7094	fatty acid salvage
HCH_02185	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
HCH_02185	PWY-735	jasmonic acid biosynthesis
HCH_02185	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
HCH_02192	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
HCH_02192	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
HCH_02192	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
HCH_02194	PWY-5663	tetrahydrobiopterin biosynthesis I
HCH_02194	PWY-5664	tetrahydrobiopterin biosynthesis II
HCH_02194	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
HCH_02194	PWY-6703	preQ<sub>0</sub> biosynthesis
HCH_02194	PWY-6983	tetrahydrobiopterin biosynthesis III
HCH_02194	PWY-7442	drosopterin and aurodrosopterin biosynthesis
HCH_02227	PWY-2781	<i>cis</i>-zeatin biosynthesis
HCH_02275	PWY-3781	aerobic respiration I (cytochrome c)
HCH_02275	PWY-4521	arsenite oxidation I (respiratory)
HCH_02275	PWY-6692	Fe(II) oxidation
HCH_02275	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
HCH_02276	PWY-3781	aerobic respiration I (cytochrome c)
HCH_02276	PWY-4521	arsenite oxidation I (respiratory)
HCH_02276	PWY-6692	Fe(II) oxidation
HCH_02276	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
HCH_02323	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
HCH_02331	PWY-6123	inosine-5'-phosphate biosynthesis I
HCH_02331	PWY-6124	inosine-5'-phosphate biosynthesis II
HCH_02331	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
HCH_02331	PWY-7234	inosine-5'-phosphate biosynthesis III
HCH_02336	PWY-5913	TCA cycle VI (obligate autotrophs)
HCH_02336	PWY-6549	L-glutamine biosynthesis III
HCH_02336	PWY-6728	methylaspartate cycle
HCH_02336	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
HCH_02336	PWY-7124	ethylene biosynthesis V (engineered)
HCH_02336	PWY-7254	TCA cycle VII (acetate-producers)
HCH_02336	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
HCH_02347	PWY-43	putrescine biosynthesis II
HCH_02352	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
HCH_02352	PWY-5723	Rubisco shunt
HCH_02401	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
HCH_02401	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
HCH_02401	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
HCH_02403	PWY-4381	fatty acid biosynthesis initiation I
HCH_02404	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
HCH_02404	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
HCH_02404	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
HCH_02406	PWY-3221	dTDP-L-rhamnose biosynthesis II
HCH_02406	PWY-6808	dTDP-D-forosamine biosynthesis
HCH_02406	PWY-6942	dTDP-D-desosamine biosynthesis
HCH_02406	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
HCH_02406	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
HCH_02406	PWY-6974	dTDP-L-olivose biosynthesis
HCH_02406	PWY-6976	dTDP-L-mycarose biosynthesis
HCH_02406	PWY-7104	dTDP-L-megosamine biosynthesis
HCH_02406	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
HCH_02406	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
HCH_02406	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
HCH_02406	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
HCH_02406	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
HCH_02406	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
HCH_02406	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
HCH_02406	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
HCH_02408	PWY-3221	dTDP-L-rhamnose biosynthesis II
HCH_02408	PWY-6808	dTDP-D-forosamine biosynthesis
HCH_02408	PWY-6942	dTDP-D-desosamine biosynthesis
HCH_02408	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
HCH_02408	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
HCH_02408	PWY-6974	dTDP-L-olivose biosynthesis
HCH_02408	PWY-6976	dTDP-L-mycarose biosynthesis
HCH_02408	PWY-7104	dTDP-L-megosamine biosynthesis
HCH_02408	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
HCH_02408	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
HCH_02408	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
HCH_02408	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
HCH_02408	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
HCH_02408	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
HCH_02408	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
HCH_02408	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
HCH_02412	PWY-5659	GDP-mannose biosynthesis
HCH_02412	PWY-6073	alginate biosynthesis I (algal)
HCH_02412	PWY-6082	alginate biosynthesis II (bacterial)
HCH_02412	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
HCH_02421	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
HCH_02430	PWY-7396	butanol and isobutanol biosynthesis (engineered)
HCH_02431	PWY-2941	L-lysine biosynthesis II
HCH_02431	PWY-2942	L-lysine biosynthesis III
HCH_02431	PWY-5097	L-lysine biosynthesis VI
HCH_02431	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
HCH_02431	PWY-6559	spermidine biosynthesis II
HCH_02431	PWY-6562	norspermidine biosynthesis
HCH_02431	PWY-7153	grixazone biosynthesis
HCH_02431	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
HCH_02438	PWY-4381	fatty acid biosynthesis initiation I
HCH_02438	PWY-5743	3-hydroxypropanoate cycle
HCH_02438	PWY-5744	glyoxylate assimilation
HCH_02438	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
HCH_02438	PWY-6679	jadomycin biosynthesis
HCH_02438	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
HCH_02439	PWY-2161	folate polyglutamylation
HCH_02442	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
HCH_02442	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
HCH_02442	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
HCH_02442	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
HCH_02449	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
HCH_02450	PWY-5194	siroheme biosynthesis
HCH_02450	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
HCH_02464	PWY-6788	cellulose degradation II (fungi)
HCH_02472	PWY-4261	glycerol degradation I
HCH_02473	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
HCH_02473	PWY-5723	Rubisco shunt
HCH_02512	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
HCH_02512	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
HCH_02512	PWY-6164	3-dehydroquinate biosynthesis I
HCH_02517	PWY-5971	palmitate biosynthesis II (bacteria and plants)
HCH_02517	PWY-5973	<i>cis</i>-vaccenate biosynthesis
HCH_02517	PWY-5989	stearate biosynthesis II (bacteria and plants)
HCH_02517	PWY-6113	superpathway of mycolate biosynthesis
HCH_02517	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
HCH_02517	PWY-6519	8-amino-7-oxononanoate biosynthesis I
HCH_02517	PWY-7096	triclosan resistance
HCH_02517	PWYG-321	mycolate biosynthesis
HCH_02525	PWY-5386	methylglyoxal degradation I
HCH_02538	PWY-6683	sulfate reduction III (assimilatory)
HCH_02542	PWY-2201	folate transformations I
HCH_02542	PWY-3841	folate transformations II
HCH_02622	PWY-6936	seleno-amino acid biosynthesis
HCH_02649	PWY-4381	fatty acid biosynthesis initiation I
HCH_02662	PWY-5958	acridone alkaloid biosynthesis
HCH_02662	PWY-6543	4-aminobenzoate biosynthesis
HCH_02662	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
HCH_02662	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
HCH_02662	PWY-6722	candicidin biosynthesis
HCH_02673	PWY-6167	flavin biosynthesis II (archaea)
HCH_02673	PWY-6168	flavin biosynthesis III (fungi)
HCH_02673	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
HCH_02684	PWY-1042	glycolysis IV (plant cytosol)
HCH_02684	PWY-5484	glycolysis II (from fructose 6-phosphate)
HCH_02684	PWY-6901	superpathway of glucose and xylose degradation
HCH_02684	PWY-7003	glycerol degradation to butanol
HCH_02695	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
HCH_02697	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
HCH_02697	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
HCH_02706	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
HCH_02706	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
HCH_02708	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
HCH_02708	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
HCH_02710	PWY-5747	2-methylcitrate cycle II
HCH_02721	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
HCH_02737	PWY-5340	sulfate activation for sulfonation
HCH_02763	PWY-5667	CDP-diacylglycerol biosynthesis I
HCH_02763	PWY-5981	CDP-diacylglycerol biosynthesis III
HCH_02799	PWY-5913	TCA cycle VI (obligate autotrophs)
HCH_02799	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
HCH_02799	PWY-6638	sulfolactate degradation III
HCH_02799	PWY-6642	(<i>R</i>)-cysteate degradation
HCH_02799	PWY-6643	coenzyme M biosynthesis II
HCH_02799	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
HCH_02799	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
HCH_02799	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
HCH_03030	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
HCH_03030	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
HCH_03058	PWY-3821	galactose degradation III
HCH_03058	PWY-6317	galactose degradation I (Leloir pathway)
HCH_03058	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
HCH_03058	PWY-6527	stachyose degradation
HCH_03058	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
HCH_03058	PWY-7344	UDP-D-galactose biosynthesis
HCH_03074	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
HCH_03075	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
HCH_03076	PWY-4202	arsenate detoxification I (glutaredoxin)
HCH_03076	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
HCH_03076	PWY-6608	guanosine nucleotides degradation III
HCH_03076	PWY-6609	adenine and adenosine salvage III
HCH_03076	PWY-6611	adenine and adenosine salvage V
HCH_03076	PWY-6620	guanine and guanosine salvage
HCH_03076	PWY-6627	salinosporamide A biosynthesis
HCH_03076	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
HCH_03076	PWY-7179	purine deoxyribonucleosides degradation I
HCH_03076	PWY-7179-1	purine deoxyribonucleosides degradation
HCH_03085	PWY-6832	2-aminoethylphosphonate degradation II
HCH_03091	PWY-6902	chitin degradation II
HCH_03095	PWY-4261	glycerol degradation I
HCH_03133	PWY-6825	phosphatidylcholine biosynthesis V
HCH_03159	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
HCH_03163	PWY-2941	L-lysine biosynthesis II
HCH_03163	PWY-2942	L-lysine biosynthesis III
HCH_03163	PWY-5097	L-lysine biosynthesis VI
HCH_03205	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
HCH_03205	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
HCH_03212	PWY-5913	TCA cycle VI (obligate autotrophs)
HCH_03212	PWY-6549	L-glutamine biosynthesis III
HCH_03212	PWY-6728	methylaspartate cycle
HCH_03212	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
HCH_03212	PWY-7124	ethylene biosynthesis V (engineered)
HCH_03212	PWY-7254	TCA cycle VII (acetate-producers)
HCH_03212	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
HCH_03268	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
HCH_03320	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
HCH_03324	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
HCH_03324	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
HCH_03388	PWY-6748	nitrate reduction VII (denitrification)
HCH_03388	PWY-7084	nitrifier denitrification
HCH_03392	PWY-5349	esculetin biosynthesis
HCH_03392	PWY-6752	<i>o</i>-diquinones biosynthesis
HCH_03409	PWY-1361	benzoyl-CoA degradation I (aerobic)
HCH_03409	PWY-5109	2-methylbutanoate biosynthesis
HCH_03409	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
HCH_03409	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
HCH_03409	PWY-5177	glutaryl-CoA degradation
HCH_03409	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
HCH_03409	PWY-6435	4-hydroxybenzoate biosynthesis V
HCH_03409	PWY-6583	pyruvate fermentation to butanol I
HCH_03409	PWY-6863	pyruvate fermentation to hexanol
HCH_03409	PWY-6883	pyruvate fermentation to butanol II
HCH_03409	PWY-6944	androstenedione degradation
HCH_03409	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
HCH_03409	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
HCH_03409	PWY-7007	methyl ketone biosynthesis
HCH_03409	PWY-7046	4-coumarate degradation (anaerobic)
HCH_03409	PWY-7094	fatty acid salvage
HCH_03409	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
HCH_03409	PWY-735	jasmonic acid biosynthesis
HCH_03409	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
HCH_03411	PWY-6655	xanthan biosynthesis
HCH_03411	PWY-6658	acetan biosynthesis
HCH_03417	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
HCH_03417	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
HCH_03417	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
HCH_03417	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
HCH_03438	PWY-1361	benzoyl-CoA degradation I (aerobic)
HCH_03438	PWY-5109	2-methylbutanoate biosynthesis
HCH_03438	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
HCH_03438	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
HCH_03438	PWY-5177	glutaryl-CoA degradation
HCH_03438	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
HCH_03438	PWY-6435	4-hydroxybenzoate biosynthesis V
HCH_03438	PWY-6583	pyruvate fermentation to butanol I
HCH_03438	PWY-6863	pyruvate fermentation to hexanol
HCH_03438	PWY-6883	pyruvate fermentation to butanol II
HCH_03438	PWY-6944	androstenedione degradation
HCH_03438	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
HCH_03438	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
HCH_03438	PWY-7007	methyl ketone biosynthesis
HCH_03438	PWY-7046	4-coumarate degradation (anaerobic)
HCH_03438	PWY-7094	fatty acid salvage
HCH_03438	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
HCH_03438	PWY-735	jasmonic acid biosynthesis
HCH_03438	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
HCH_03488	PWY-4381	fatty acid biosynthesis initiation I
HCH_03488	PWY-6799	fatty acid biosynthesis (plant mitochondria)
HCH_03488	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
HCH_03516	PWY-6854	ethylene biosynthesis III (microbes)
HCH_03543	PWY-5530	sorbitol biosynthesis II
HCH_03543	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
HCH_03628	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
HCH_03641	PWY-2941	L-lysine biosynthesis II
HCH_03641	PWY-5097	L-lysine biosynthesis VI
HCH_03662	PWY-4702	phytate degradation I
HCH_03667	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
HCH_03696	PWY-5667	CDP-diacylglycerol biosynthesis I
HCH_03696	PWY-5981	CDP-diacylglycerol biosynthesis III
HCH_03860	PWY-1622	formaldehyde assimilation I (serine pathway)
HCH_03860	PWY-181	photorespiration
HCH_03860	PWY-2161	folate polyglutamylation
HCH_03860	PWY-2201	folate transformations I
HCH_03860	PWY-3661	glycine betaine degradation I
HCH_03860	PWY-3661-1	glycine betaine degradation II (mammalian)
HCH_03860	PWY-3841	folate transformations II
HCH_03860	PWY-5497	purine nucleobases degradation II (anaerobic)
HCH_03913	PWY-3461	L-tyrosine biosynthesis II
HCH_03913	PWY-3462	L-phenylalanine biosynthesis II
HCH_03913	PWY-6120	L-tyrosine biosynthesis III
HCH_03913	PWY-6627	salinosporamide A biosynthesis
HCH_03944	PWY-4381	fatty acid biosynthesis initiation I
HCH_03944	PWY-5743	3-hydroxypropanoate cycle
HCH_03944	PWY-5744	glyoxylate assimilation
HCH_03944	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
HCH_03944	PWY-6679	jadomycin biosynthesis
HCH_03944	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
HCH_03947	PWY-5074	mevalonate degradation
HCH_03988	PWY-6823	molybdenum cofactor biosynthesis
HCH_04006	PWY-7254	TCA cycle VII (acetate-producers)
HCH_04043	PWY-5269	cardiolipin biosynthesis II
HCH_04043	PWY-5668	cardiolipin biosynthesis I
HCH_04075	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
HCH_04117	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
HCH_04117	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
HCH_04117	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
HCH_04117	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
HCH_04150	PWY-842	starch degradation I
HCH_04152	PWY-842	starch degradation I
HCH_04169	PWY-5028	L-histidine degradation II
HCH_04169	PWY-5030	L-histidine degradation III
HCH_04171	PWY-5028	L-histidine degradation II
HCH_04171	PWY-5030	L-histidine degradation III
HCH_04172	PWY-5028	L-histidine degradation II
HCH_04172	PWY-5030	L-histidine degradation III
HCH_04193	PWY-4261	glycerol degradation I
HCH_04193	PWY-6118	glycerol-3-phosphate shuttle
HCH_04193	PWY-6952	glycerophosphodiester degradation
HCH_04309	PWY-842	starch degradation I
HCH_04327	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
HCH_04327	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
HCH_04327	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
HCH_04332	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
HCH_04355	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
HCH_04355	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
HCH_04357	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
HCH_04357	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
HCH_04357	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
HCH_04357	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
HCH_04357	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
HCH_04357	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
HCH_04357	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
HCH_04357	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
HCH_04357	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
HCH_04357	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
HCH_04382	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
HCH_04407	PWY-5344	L-homocysteine biosynthesis
HCH_04407	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
HCH_04410	PWY-3781	aerobic respiration I (cytochrome c)
HCH_04410	PWY-4521	arsenite oxidation I (respiratory)
HCH_04410	PWY-6692	Fe(II) oxidation
HCH_04410	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
HCH_04450	PWY-5482	pyruvate fermentation to acetate II
HCH_04450	PWY-5485	pyruvate fermentation to acetate IV
HCH_04450	PWY-5497	purine nucleobases degradation II (anaerobic)
HCH_04451	PWY-1281	sulfoacetaldehyde degradation I
HCH_04451	PWY-5482	pyruvate fermentation to acetate II
HCH_04451	PWY-5485	pyruvate fermentation to acetate IV
HCH_04451	PWY-5497	purine nucleobases degradation II (anaerobic)
HCH_04451	PWY-6637	sulfolactate degradation II
HCH_04456	PWY-7560	methylerythritol phosphate pathway II
HCH_04460	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
HCH_04460	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
HCH_04460	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
HCH_04460	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
HCH_04460	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
HCH_04460	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
HCH_04460	PWY-7205	CMP phosphorylation
HCH_04460	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
HCH_04460	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
HCH_04460	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
HCH_04460	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
HCH_04460	PWY-7224	purine deoxyribonucleosides salvage
HCH_04460	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
HCH_04460	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
HCH_04461	PWY-6823	molybdenum cofactor biosynthesis
HCH_04461	PWY-6891	thiazole biosynthesis II (Bacillus)
HCH_04461	PWY-6892	thiazole biosynthesis I (E. coli)
HCH_04461	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
HCH_04463	PWY-6936	seleno-amino acid biosynthesis
HCH_04463	PWY-7274	D-cycloserine biosynthesis
HCH_04469	PWY-6700	queuosine biosynthesis
HCH_04470	PWY-6700	queuosine biosynthesis
HCH_04489	PWY-6700	queuosine biosynthesis
HCH_04521	PWY-5704	urea degradation II
HCH_04522	PWY-5704	urea degradation II
HCH_04523	PWY-5704	urea degradation II
HCH_04530	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
HCH_04530	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
HCH_04592	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
HCH_04592	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
HCH_04592	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
HCH_04598	PWY-5386	methylglyoxal degradation I
HCH_04603	PWY-6123	inosine-5'-phosphate biosynthesis I
HCH_04603	PWY-7234	inosine-5'-phosphate biosynthesis III
HCH_04606	PWY-6854	ethylene biosynthesis III (microbes)
HCH_04623	PWY-4261	glycerol degradation I
HCH_04624	PWY-4261	glycerol degradation I
HCH_04624	PWY-6118	glycerol-3-phosphate shuttle
HCH_04624	PWY-6952	glycerophosphodiester degradation
HCH_04625	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
HCH_04625	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
HCH_04653	PWY-1042	glycolysis IV (plant cytosol)
HCH_04653	PWY-5484	glycolysis II (from fructose 6-phosphate)
HCH_04653	PWY-6901	superpathway of glucose and xylose degradation
HCH_04653	PWY-7003	glycerol degradation to butanol
HCH_04675	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
HCH_04675	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
HCH_04677	PWY-6655	xanthan biosynthesis
HCH_04677	PWY-6658	acetan biosynthesis
HCH_04682	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
HCH_04740	PWY-5392	reductive TCA cycle II
HCH_04740	PWY-5537	pyruvate fermentation to acetate V
HCH_04740	PWY-5538	pyruvate fermentation to acetate VI
HCH_04740	PWY-5690	TCA cycle II (plants and fungi)
HCH_04740	PWY-5913	TCA cycle VI (obligate autotrophs)
HCH_04740	PWY-6728	methylaspartate cycle
HCH_04740	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
HCH_04740	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
HCH_04741	PWY-5392	reductive TCA cycle II
HCH_04741	PWY-5537	pyruvate fermentation to acetate V
HCH_04741	PWY-5538	pyruvate fermentation to acetate VI
HCH_04741	PWY-5690	TCA cycle II (plants and fungi)
HCH_04741	PWY-5913	TCA cycle VI (obligate autotrophs)
HCH_04741	PWY-6728	methylaspartate cycle
HCH_04741	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
HCH_04741	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
HCH_04743	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
HCH_04743	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
HCH_04744	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
HCH_04745	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
HCH_04746	PWY-3781	aerobic respiration I (cytochrome c)
HCH_04746	PWY-4302	aerobic respiration III (alternative oxidase pathway)
HCH_04746	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
HCH_04746	PWY-5690	TCA cycle II (plants and fungi)
HCH_04746	PWY-6728	methylaspartate cycle
HCH_04746	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
HCH_04746	PWY-7254	TCA cycle VII (acetate-producers)
HCH_04746	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
HCH_04747	PWY-3781	aerobic respiration I (cytochrome c)
HCH_04747	PWY-4302	aerobic respiration III (alternative oxidase pathway)
HCH_04747	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
HCH_04747	PWY-5690	TCA cycle II (plants and fungi)
HCH_04747	PWY-6728	methylaspartate cycle
HCH_04747	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
HCH_04747	PWY-7254	TCA cycle VII (acetate-producers)
HCH_04747	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
HCH_04754	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
HCH_04754	PWY-6435	4-hydroxybenzoate biosynthesis V
HCH_04754	PWY-6863	pyruvate fermentation to hexanol
HCH_04754	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
HCH_04754	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
HCH_04754	PWY-6948	sitosterol degradation to androstenedione
HCH_04754	PWY-7094	fatty acid salvage
HCH_04754	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
HCH_04754	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
HCH_04754	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
HCH_04754	PWY-7339	10-<i>trans</i>-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
HCH_04754	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
HCH_04754	PWY-735	jasmonic acid biosynthesis
HCH_04756	PWY-1361	benzoyl-CoA degradation I (aerobic)
HCH_04756	PWY-5109	2-methylbutanoate biosynthesis
HCH_04756	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
HCH_04756	PWY-5137	fatty acid &beta;-oxidation III (unsaturated, odd number)
HCH_04756	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
HCH_04756	PWY-5177	glutaryl-CoA degradation
HCH_04756	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
HCH_04756	PWY-6435	4-hydroxybenzoate biosynthesis V
HCH_04756	PWY-6583	pyruvate fermentation to butanol I
HCH_04756	PWY-6837	fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)
HCH_04756	PWY-6863	pyruvate fermentation to hexanol
HCH_04756	PWY-6883	pyruvate fermentation to butanol II
HCH_04756	PWY-6944	androstenedione degradation
HCH_04756	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
HCH_04756	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
HCH_04756	PWY-7007	methyl ketone biosynthesis
HCH_04756	PWY-7046	4-coumarate degradation (anaerobic)
HCH_04756	PWY-7094	fatty acid salvage
HCH_04756	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
HCH_04756	PWY-7291	oleate &beta;-oxidation (isomerase-dependent, yeast)
HCH_04756	PWY-735	jasmonic acid biosynthesis
HCH_04756	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
HCH_04767	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
HCH_04777	PWY-5022	4-aminobutanoate degradation V
HCH_04777	PWY-6728	methylaspartate cycle
HCH_04777	PWY-7126	ethylene biosynthesis IV
HCH_04791	PWY-6902	chitin degradation II
HCH_04793	PWY-6902	chitin degradation II
HCH_04804	PWY-6672	<i>cis</i>-genanyl-CoA degradation
HCH_04804	PWY-7118	chitin degradation to ethanol
HCH_04815	PWY-5392	reductive TCA cycle II
HCH_04815	PWY-5537	pyruvate fermentation to acetate V
HCH_04815	PWY-5538	pyruvate fermentation to acetate VI
HCH_04815	PWY-5690	TCA cycle II (plants and fungi)
HCH_04815	PWY-5913	TCA cycle VI (obligate autotrophs)
HCH_04815	PWY-6728	methylaspartate cycle
HCH_04815	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
HCH_04815	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
HCH_04832	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
HCH_04832	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
HCH_04835	PWY-6749	CMP-legionaminate biosynthesis I
HCH_04835	PWY-7131	CMP-legionaminate biosynthesis II
HCH_04856	PWY-7039	phosphatidate metabolism, as a signaling molecule
HCH_04895	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
HCH_04895	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
HCH_04895	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
HCH_04895	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
HCH_04895	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
HCH_04895	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
HCH_04895	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
HCH_04895	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
HCH_04896	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
HCH_04896	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
HCH_04896	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
HCH_04896	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
HCH_04896	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
HCH_04896	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
HCH_04896	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
HCH_04896	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
HCH_04897	PWY-3801	sucrose degradation II (sucrose synthase)
HCH_04897	PWY-6527	stachyose degradation
HCH_04897	PWY-6981	chitin biosynthesis
HCH_04897	PWY-7238	sucrose biosynthesis II
HCH_04897	PWY-7343	UDP-glucose biosynthesis
HCH_04899	PWY-6823	molybdenum cofactor biosynthesis
HCH_04901	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
HCH_04901	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
HCH_04901	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
HCH_04901	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
HCH_04904	PWY-6123	inosine-5'-phosphate biosynthesis I
HCH_04904	PWY-6124	inosine-5'-phosphate biosynthesis II
HCH_04904	PWY-7234	inosine-5'-phosphate biosynthesis III
HCH_04906	PWY-2941	L-lysine biosynthesis II
HCH_04906	PWY-2942	L-lysine biosynthesis III
HCH_04906	PWY-5097	L-lysine biosynthesis VI
HCH_04912	PWY-5316	nicotine biosynthesis
HCH_04912	PWY-7342	superpathway of nicotine biosynthesis
HCH_04938	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
HCH_04939	PWY-3821	galactose degradation III
HCH_04939	PWY-6317	galactose degradation I (Leloir pathway)
HCH_04939	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
HCH_04939	PWY-6527	stachyose degradation
HCH_04939	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
HCH_04939	PWY-7344	UDP-D-galactose biosynthesis
HCH_04942	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
HCH_04943	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
HCH_04943	PWY-6596	adenosine nucleotides degradation I
HCH_04943	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
HCH_04965	PWY-5686	UMP biosynthesis
HCH_04974	PWY-5686	UMP biosynthesis
HCH_04979	PWY-7205	CMP phosphorylation
HCH_04980	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
HCH_04981	PWY-3461	L-tyrosine biosynthesis II
HCH_04981	PWY-3462	L-phenylalanine biosynthesis II
HCH_04981	PWY-6120	L-tyrosine biosynthesis III
HCH_04981	PWY-6627	salinosporamide A biosynthesis
HCH_04981	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
HCH_04985	PWY-2201	folate transformations I
HCH_04985	PWY-5497	purine nucleobases degradation II (anaerobic)
HCH_04986	PWY-7158	L-phenylalanine degradation V
HCH_04987	PWY-5392	reductive TCA cycle II
HCH_04987	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
HCH_04987	PWY-5690	TCA cycle II (plants and fungi)
HCH_04987	PWY-5913	TCA cycle VI (obligate autotrophs)
HCH_04987	PWY-6728	methylaspartate cycle
HCH_04987	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
HCH_04987	PWY-7254	TCA cycle VII (acetate-producers)
HCH_04987	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
HCH_04989	PWY-4983	L-citrulline-nitric oxide cycle
HCH_04989	PWY-4984	urea cycle
HCH_04989	PWY-5	canavanine biosynthesis
HCH_04989	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
HCH_04989	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
HCH_04992	PWY-5686	UMP biosynthesis
HCH_04996	PWY-5676	acetyl-CoA fermentation to butanoate II
HCH_04996	PWY-5741	ethylmalonyl-CoA pathway
HCH_04996	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
HCH_05074	PWY-6672	<i>cis</i>-genanyl-CoA degradation
HCH_05074	PWY-7118	chitin degradation to ethanol
HCH_05080	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
HCH_05080	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
HCH_05081	PWY-5381	pyridine nucleotide cycling (plants)
HCH_05086	PWY-5667	CDP-diacylglycerol biosynthesis I
HCH_05086	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
HCH_05092	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
HCH_05107	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
HCH_05146	PWY-6871	3-methylbutanol biosynthesis
HCH_05190	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
HCH_05201	PWY-6339	syringate degradation
HCH_05203	PWY-6339	syringate degradation
HCH_05208	PWY-2941	L-lysine biosynthesis II
HCH_05208	PWY-2942	L-lysine biosynthesis III
HCH_05208	PWY-5097	L-lysine biosynthesis VI
HCH_05208	PWY-6559	spermidine biosynthesis II
HCH_05208	PWY-6562	norspermidine biosynthesis
HCH_05208	PWY-7153	grixazone biosynthesis
HCH_05228	PWY-5964	guanylyl molybdenum cofactor biosynthesis
HCH_05229	PWY-6823	molybdenum cofactor biosynthesis
HCH_05240	PWY-5971	palmitate biosynthesis II (bacteria and plants)
HCH_05240	PWY-5973	<i>cis</i>-vaccenate biosynthesis
HCH_05240	PWY-5989	stearate biosynthesis II (bacteria and plants)
HCH_05240	PWY-5994	palmitate biosynthesis I (animals and fungi)
HCH_05240	PWY-6113	superpathway of mycolate biosynthesis
HCH_05240	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
HCH_05240	PWY-6519	8-amino-7-oxononanoate biosynthesis I
HCH_05240	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
HCH_05240	PWYG-321	mycolate biosynthesis
HCH_05246	PWY-7560	methylerythritol phosphate pathway II
HCH_05265	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
HCH_05265	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
HCH_05265	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
HCH_05265	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
HCH_05265	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
HCH_05265	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
HCH_05302	PWY-5663	tetrahydrobiopterin biosynthesis I
HCH_05302	PWY-5664	tetrahydrobiopterin biosynthesis II
HCH_05302	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
HCH_05302	PWY-6703	preQ<sub>0</sub> biosynthesis
HCH_05302	PWY-6983	tetrahydrobiopterin biosynthesis III
HCH_05302	PWY-7442	drosopterin and aurodrosopterin biosynthesis
HCH_05307	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
HCH_05307	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
HCH_05316	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
HCH_05316	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
HCH_05337	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
HCH_05342	PWY-5278	sulfite oxidation III
HCH_05342	PWY-5340	sulfate activation for sulfonation
HCH_05342	PWY-6683	sulfate reduction III (assimilatory)
HCH_05342	PWY-6932	selenate reduction
HCH_05344	PWY-5278	sulfite oxidation III
HCH_05344	PWY-5340	sulfate activation for sulfonation
HCH_05344	PWY-6683	sulfate reduction III (assimilatory)
HCH_05344	PWY-6932	selenate reduction
HCH_05345	PWY-6832	2-aminoethylphosphonate degradation II
HCH_05366	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
HCH_05368	PWY-6519	8-amino-7-oxononanoate biosynthesis I
HCH_05370	PWY-6519	8-amino-7-oxononanoate biosynthesis I
HCH_05370	PWY-6578	8-amino-7-oxononanoate biosynthesis III
HCH_05370	PWY-7147	8-amino-7-oxononanoate biosynthesis II
HCH_05371	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
HCH_05377	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
HCH_05384	PWY-2781	<i>cis</i>-zeatin biosynthesis
HCH_05389	PWY-6938	NADH repair
HCH_05396	PWY-5350	thiosulfate disproportionation III (rhodanese)
HCH_05397	PWY-5669	phosphatidylethanolamine biosynthesis I
HCH_05407	PWY-6803	phosphatidylcholine acyl editing
HCH_05407	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
HCH_05407	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
HCH_05407	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
HCH_05453	PWY-6902	chitin degradation II
HCH_05473	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
HCH_05489	PWY-4981	L-proline biosynthesis II (from arginine)
HCH_05489	PWY-4984	urea cycle
HCH_05489	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
HCH_05490	PWY-4981	L-proline biosynthesis II (from arginine)
HCH_05512	PWY-6012	acyl carrier protein metabolism I
HCH_05512	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
HCH_05519	PWY-4381	fatty acid biosynthesis initiation I
HCH_05574	PWY-7153	grixazone biosynthesis
HCH_05736	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
HCH_05748	PWY-4381	fatty acid biosynthesis initiation I
HCH_05748	PWY-5743	3-hydroxypropanoate cycle
HCH_05748	PWY-5744	glyoxylate assimilation
HCH_05748	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
HCH_05748	PWY-6679	jadomycin biosynthesis
HCH_05748	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
HCH_05754	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
HCH_05754	PWY-5143	long-chain fatty acid activation
HCH_05754	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
HCH_05754	PWY-5885	wax esters biosynthesis II
HCH_05754	PWY-5972	stearate biosynthesis I (animals and fungi)
HCH_05754	PWY-5995	linoleate biosynthesis I (plants)
HCH_05754	PWY-6000	&gamma;-linolenate biosynthesis II (animals)
HCH_05754	PWY-6001	linoleate biosynthesis II (animals)
HCH_05754	PWY-6803	phosphatidylcholine acyl editing
HCH_05754	PWY-6873	long chain fatty acid ester synthesis for microdiesel production
HCH_05754	PWY-6920	6-gingerol analog biosynthesis
HCH_05754	PWY-6951	HCH_05754
HCH_05754	PWY-7033	alkane biosynthesis II
HCH_05754	PWY-7035	(<i>Z</i>)-9-tricosene biosynthesis
HCH_05754	PWY-7049	icosapentaenoate biosynthesis II (metazoa)
HCH_05754	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
HCH_05754	PWY-7094	fatty acid salvage
HCH_05754	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
HCH_05760	PWY-4041	&gamma;-glutamyl cycle
HCH_05767	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
HCH_05790	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
HCH_05790	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
HCH_05798	PWY-1042	glycolysis IV (plant cytosol)
HCH_05798	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
HCH_05798	PWY-5484	glycolysis II (from fructose 6-phosphate)
HCH_05798	PWY-6531	mannitol cycle
HCH_05798	PWY-7385	1,3-propanediol biosynthesis (engineered)
HCH_05805	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
HCH_05805	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
HCH_05806	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
HCH_05806	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
HCH_05820	PWY-6683	sulfate reduction III (assimilatory)
HCH_05826	PWY-5491	diethylphosphate degradation
HCH_05836	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
HCH_05836	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
HCH_05836	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
HCH_05837	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
HCH_05837	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
HCH_05839	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
HCH_05839	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
HCH_05846	PWY-5381	pyridine nucleotide cycling (plants)
HCH_05846	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
HCH_05854	PWY-5101	L-isoleucine biosynthesis II
HCH_05854	PWY-5103	L-isoleucine biosynthesis III
HCH_05854	PWY-5104	L-isoleucine biosynthesis IV
HCH_05854	PWY-7111	pyruvate fermentation to isobutanol (engineered)
HCH_05856	PWY-3841	folate transformations II
HCH_05856	PWY-6614	tetrahydrofolate biosynthesis
HCH_05857	PWY-3841	folate transformations II
HCH_05857	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
HCH_05857	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
HCH_05857	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
HCH_05857	PWY-7199	pyrimidine deoxyribonucleosides salvage
HCH_05857	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
HCH_05866	PWY-6891	thiazole biosynthesis II (Bacillus)
HCH_05866	PWY-6892	thiazole biosynthesis I (E. coli)
HCH_05866	PWY-7560	methylerythritol phosphate pathway II
HCH_05867	PWY-6168	flavin biosynthesis III (fungi)
HCH_05867	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
HCH_05868	PWY-6823	molybdenum cofactor biosynthesis
HCH_05871	PWY-6502	oxidized GTP and dGTP detoxification
HCH_05872	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
HCH_05881	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
HCH_05881	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
HCH_05882	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
HCH_05882	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
HCH_05883	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
HCH_05883	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
HCH_05883	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
HCH_05883	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
HCH_05885	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
HCH_05885	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
HCH_05886	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
HCH_05886	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
HCH_05886	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
HCH_05887	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
HCH_05887	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
HCH_05896	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
HCH_05900	PWY-3781	aerobic respiration I (cytochrome c)
HCH_05900	PWY-6692	Fe(II) oxidation
HCH_05900	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
HCH_05900	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
HCH_05908	PWY-6871	3-methylbutanol biosynthesis
HCH_05913	PWY-5669	phosphatidylethanolamine biosynthesis I
HCH_05914	PWY-5101	L-isoleucine biosynthesis II
HCH_05914	PWY-5103	L-isoleucine biosynthesis III
HCH_05914	PWY-5104	L-isoleucine biosynthesis IV
HCH_05914	PWY-7111	pyruvate fermentation to isobutanol (engineered)
HCH_05915	PWY-5101	L-isoleucine biosynthesis II
HCH_05915	PWY-5103	L-isoleucine biosynthesis III
HCH_05915	PWY-5104	L-isoleucine biosynthesis IV
HCH_05915	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
HCH_05915	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
HCH_05915	PWY-6389	(<i>S</i>)-acetoin biosynthesis
HCH_05915	PWY-7111	pyruvate fermentation to isobutanol (engineered)
HCH_05916	PWY-5101	L-isoleucine biosynthesis II
HCH_05916	PWY-5103	L-isoleucine biosynthesis III
HCH_05916	PWY-5104	L-isoleucine biosynthesis IV
HCH_05916	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
HCH_05916	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
HCH_05916	PWY-6389	(<i>S</i>)-acetoin biosynthesis
HCH_05916	PWY-7111	pyruvate fermentation to isobutanol (engineered)
HCH_05923	PWY-5381	pyridine nucleotide cycling (plants)
HCH_05923	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
HCH_05930	PWY-7560	methylerythritol phosphate pathway II
HCH_05934	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
HCH_05934	PWY-6167	flavin biosynthesis II (archaea)
HCH_05934	PWY-6168	flavin biosynthesis III (fungi)
HCH_05951	PWY-5269	cardiolipin biosynthesis II
HCH_05951	PWY-5668	cardiolipin biosynthesis I
HCH_05952	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
HCH_05952	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
HCH_05952	PWY-6896	thiamin salvage I
HCH_05952	PWY-6897	thiamin salvage II
HCH_05954	PWY-6167	flavin biosynthesis II (archaea)
HCH_05954	PWY-6168	flavin biosynthesis III (fungi)
HCH_05955	PWY-6167	flavin biosynthesis II (archaea)
HCH_05955	PWY-6168	flavin biosynthesis III (fungi)
HCH_05955	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
HCH_05956	PWY-6167	flavin biosynthesis II (archaea)
HCH_05956	PWY-6168	flavin biosynthesis III (fungi)
HCH_05956	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
HCH_05959	PWY-1622	formaldehyde assimilation I (serine pathway)
HCH_05959	PWY-181	photorespiration
HCH_05959	PWY-2161	folate polyglutamylation
HCH_05959	PWY-2201	folate transformations I
HCH_05959	PWY-3661	glycine betaine degradation I
HCH_05959	PWY-3661-1	glycine betaine degradation II (mammalian)
HCH_05959	PWY-3841	folate transformations II
HCH_05959	PWY-5497	purine nucleobases degradation II (anaerobic)
HCH_05963	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
HCH_05963	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
HCH_05967	PWY-6164	3-dehydroquinate biosynthesis I
HCH_05968	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
HCH_06004	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
HCH_06004	PWY-6416	quinate degradation II
HCH_06004	PWY-6707	gallate biosynthesis
HCH_06011	PWY-6123	inosine-5'-phosphate biosynthesis I
HCH_06011	PWY-6124	inosine-5'-phosphate biosynthesis II
HCH_06011	PWY-7234	inosine-5'-phosphate biosynthesis III
HCH_06012	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
HCH_06012	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
HCH_06012	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
HCH_06020	PWY-2941	L-lysine biosynthesis II
HCH_06020	PWY-2942	L-lysine biosynthesis III
HCH_06020	PWY-5097	L-lysine biosynthesis VI
HCH_06035	PWY-6012	acyl carrier protein metabolism I
HCH_06035	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
HCH_06088	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
HCH_06088	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
HCH_06088	PWY-6164	3-dehydroquinate biosynthesis I
HCH_06095	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
HCH_06112	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
HCH_06112	PWY-5723	Rubisco shunt
HCH_06113	PWY-181	photorespiration
HCH_06125	PWY-5958	acridone alkaloid biosynthesis
HCH_06125	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
HCH_06125	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
HCH_06126	PWY-5958	acridone alkaloid biosynthesis
HCH_06126	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
HCH_06126	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
HCH_06136	PWY-6834	spermidine biosynthesis III
HCH_06138	PWY-5723	Rubisco shunt
HCH_06159	PWY-6936	seleno-amino acid biosynthesis
HCH_06159	PWY-7274	D-cycloserine biosynthesis
HCH_06160	PWY-6936	seleno-amino acid biosynthesis
HCH_06160	PWY-7274	D-cycloserine biosynthesis
HCH_06166	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
HCH_06167	PWY-5340	sulfate activation for sulfonation
HCH_06172	PWY-6936	seleno-amino acid biosynthesis
HCH_06172	PWY-7274	D-cycloserine biosynthesis
HCH_06182	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
HCH_06188	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
HCH_06188	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
HCH_06233	PWY-3961	phosphopantothenate biosynthesis II
HCH_06234	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
HCH_06234	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
HCH_06245	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
HCH_06245	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
HCH_06248	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
HCH_06250	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
HCH_06250	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
HCH_06250	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
HCH_06250	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
HCH_06263	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
HCH_06263	PWY-6148	tetrahydromethanopterin biosynthesis
HCH_06263	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
HCH_06263	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
HCH_06264	PWY-6654	phosphopantothenate biosynthesis III
HCH_06266	PWY-3801	sucrose degradation II (sucrose synthase)
HCH_06266	PWY-5054	sorbitol biosynthesis I
HCH_06266	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
HCH_06266	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
HCH_06266	PWY-5659	GDP-mannose biosynthesis
HCH_06266	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
HCH_06266	PWY-621	sucrose degradation III (sucrose invertase)
HCH_06266	PWY-622	starch biosynthesis
HCH_06266	PWY-6531	mannitol cycle
HCH_06266	PWY-6981	chitin biosynthesis
HCH_06266	PWY-7238	sucrose biosynthesis II
HCH_06266	PWY-7347	sucrose biosynthesis III
HCH_06266	PWY-7385	1,3-propanediol biosynthesis (engineered)
HCH_06267	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
HCH_06267	PWY-6148	tetrahydromethanopterin biosynthesis
HCH_06267	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
HCH_06267	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
HCH_06268	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
HCH_06268	PWY-6148	tetrahydromethanopterin biosynthesis
HCH_06268	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
HCH_06268	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
HCH_06315	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
HCH_06321	PWY-381	nitrate reduction II (assimilatory)
HCH_06321	PWY-5675	nitrate reduction V (assimilatory)
HCH_06321	PWY-6549	L-glutamine biosynthesis III
HCH_06321	PWY-6963	ammonia assimilation cycle I
HCH_06321	PWY-6964	ammonia assimilation cycle II
HCH_06340	PWY-5686	UMP biosynthesis
HCH_06348	PWY-702	L-methionine biosynthesis II
HCH_06353	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
HCH_06354	PWY-3341	L-proline biosynthesis III
HCH_06354	PWY-4981	L-proline biosynthesis II (from arginine)
HCH_06354	PWY-6344	L-ornithine degradation II (Stickland reaction)
HCH_06359	PWY-5344	L-homocysteine biosynthesis
HCH_06362	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
HCH_06377	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
HCH_06403	PWY-5971	palmitate biosynthesis II (bacteria and plants)
HCH_06403	PWY-5973	<i>cis</i>-vaccenate biosynthesis
HCH_06403	PWY-5989	stearate biosynthesis II (bacteria and plants)
HCH_06403	PWY-5994	palmitate biosynthesis I (animals and fungi)
HCH_06403	PWY-6113	superpathway of mycolate biosynthesis
HCH_06403	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
HCH_06403	PWY-6519	8-amino-7-oxononanoate biosynthesis I
HCH_06403	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
HCH_06403	PWYG-321	mycolate biosynthesis
HCH_06406	PWY-40	putrescine biosynthesis I
HCH_06406	PWY-43	putrescine biosynthesis II
HCH_06406	PWY-6305	putrescine biosynthesis IV
HCH_06406	PWY-6834	spermidine biosynthesis III
HCH_06422	PWY-6840	homoglutathione biosynthesis
HCH_06422	PWY-7255	ergothioneine biosynthesis I (bacteria)
HCH_06439	PWY-6749	CMP-legionaminate biosynthesis I
HCH_06446	PWY-5484	glycolysis II (from fructose 6-phosphate)
HCH_06460	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
HCH_06460	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
HCH_06461	PWY-5443	aminopropanol phosphate biosynthesis I
HCH_06467	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
HCH_06467	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
HCH_06467	PWY-6268	adenosylcobalamin salvage from cobalamin
HCH_06467	PWY-6269	adenosylcobalamin salvage from cobinamide II
HCH_06469	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
HCH_06472	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
HCH_06474	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
HCH_06476	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
HCH_06479	PWY-5194	siroheme biosynthesis
HCH_06479	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
HCH_06532	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
HCH_06532	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
HCH_06532	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
HCH_06532	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
HCH_06532	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
HCH_06532	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
HCH_06532	PWY-7205	CMP phosphorylation
HCH_06532	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
HCH_06532	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
HCH_06532	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
HCH_06532	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
HCH_06532	PWY-7224	purine deoxyribonucleosides salvage
HCH_06532	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
HCH_06532	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
HCH_06549	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
HCH_06563	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
HCH_06563	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
HCH_06563	PWY-5901	2,3-dihydroxybenzoate biosynthesis
HCH_06563	PWY-6406	salicylate biosynthesis I
HCH_06565	PWY-5901	2,3-dihydroxybenzoate biosynthesis
HCH_06575	PWY-5901	2,3-dihydroxybenzoate biosynthesis
HCH_06624	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
HCH_06642	PWY-6703	preQ<sub>0</sub> biosynthesis
HCH_06643	PWY-6703	preQ<sub>0</sub> biosynthesis
HCH_06791	PWY-6788	cellulose degradation II (fungi)
HCH_06798	PWY-4041	&gamma;-glutamyl cycle
HCH_06798	PWY-5826	hypoglycin biosynthesis
HCH_06836	PWY-5057	L-valine degradation II
HCH_06836	PWY-5076	L-leucine degradation III
HCH_06836	PWY-5078	L-isoleucine degradation II
HCH_06836	PWY-5101	L-isoleucine biosynthesis II
HCH_06836	PWY-5103	L-isoleucine biosynthesis III
HCH_06836	PWY-5104	L-isoleucine biosynthesis IV
HCH_06836	PWY-5108	L-isoleucine biosynthesis V
HCH_06858	PWY-5101	L-isoleucine biosynthesis II
HCH_06858	PWY-5103	L-isoleucine biosynthesis III
HCH_06858	PWY-5104	L-isoleucine biosynthesis IV
HCH_06858	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
HCH_06858	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
HCH_06858	PWY-6389	(<i>S</i>)-acetoin biosynthesis
HCH_06858	PWY-7111	pyruvate fermentation to isobutanol (engineered)
HCH_06898	PWY-6788	cellulose degradation II (fungi)
HCH_06907	PWY-3121	linamarin degradation
HCH_06907	PWY-5176	coumarin biosynthesis (via 2-coumarate)
HCH_06907	PWY-6002	lotaustralin degradation
HCH_06907	PWY-6788	cellulose degradation II (fungi)
HCH_06907	PWY-7089	taxiphyllin bioactivation
HCH_06907	PWY-7091	linustatin bioactivation
HCH_06907	PWY-7092	neolinustatin bioactivation
HCH_06928	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
HCH_06928	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
HCH_06928	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
HCH_06928	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
HCH_06928	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
HCH_06928	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
HCH_06928	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
HCH_06928	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
HCH_06929	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
HCH_06929	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
HCH_06929	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
HCH_06929	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
HCH_06929	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
HCH_06929	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
HCH_06929	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
HCH_06929	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
HCH_06964	PWY-4261	glycerol degradation I
HCH_06964	PWY-6118	glycerol-3-phosphate shuttle
HCH_06964	PWY-6952	glycerophosphodiester degradation
HCH_06965	PWY-4261	glycerol degradation I
HCH_06984	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
HCH_06984	PWY-6855	chitin degradation I (archaea)
HCH_06984	PWY-6906	chitin derivatives degradation
HCH_06986	PWY-6906	chitin derivatives degradation
HCH_06986	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
HCH_06986	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
HCH_06992	PWY-5381	pyridine nucleotide cycling (plants)
HCH_07068	PWY-6749	CMP-legionaminate biosynthesis I
HCH_07069	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
HCH_07071	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
HCH_07073	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
HCH_10005	PWY-1801	formaldehyde oxidation II (glutathione-dependent)