Halhy_0010	PWY-3781	aerobic respiration I (cytochrome c)
Halhy_0010	PWY-4521	arsenite oxidation I (respiratory)
Halhy_0010	PWY-6692	Fe(II) oxidation
Halhy_0010	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Halhy_0044	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Halhy_0045	PWY-5941	glycogen degradation II (eukaryotic)
Halhy_0045	PWY-6724	starch degradation II
Halhy_0045	PWY-6737	starch degradation V
Halhy_0045	PWY-7238	sucrose biosynthesis II
Halhy_0054	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Halhy_0062	PWY-6938	NADH repair
Halhy_0075	PWY-1042	glycolysis IV (plant cytosol)
Halhy_0075	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Halhy_0075	PWY-5484	glycolysis II (from fructose 6-phosphate)
Halhy_0075	PWY-7385	1,3-propanediol biosynthesis (engineered)
Halhy_0086	PWY-2941	L-lysine biosynthesis II
Halhy_0086	PWY-2942	L-lysine biosynthesis III
Halhy_0086	PWY-5097	L-lysine biosynthesis VI
Halhy_0088	PWY-6700	queuosine biosynthesis
Halhy_0091	PWY-5381	pyridine nucleotide cycling (plants)
Halhy_0113	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Halhy_0157	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Halhy_0162	PWY-7205	CMP phosphorylation
Halhy_0165	PWY-6700	queuosine biosynthesis
Halhy_0171	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Halhy_0171	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Halhy_0179	PWY-1361	benzoyl-CoA degradation I (aerobic)
Halhy_0179	PWY-5109	2-methylbutanoate biosynthesis
Halhy_0179	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Halhy_0179	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Halhy_0179	PWY-5177	glutaryl-CoA degradation
Halhy_0179	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Halhy_0179	PWY-6435	4-hydroxybenzoate biosynthesis V
Halhy_0179	PWY-6583	pyruvate fermentation to butanol I
Halhy_0179	PWY-6863	pyruvate fermentation to hexanol
Halhy_0179	PWY-6883	pyruvate fermentation to butanol II
Halhy_0179	PWY-6944	androstenedione degradation
Halhy_0179	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Halhy_0179	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Halhy_0179	PWY-7007	methyl ketone biosynthesis
Halhy_0179	PWY-7046	4-coumarate degradation (anaerobic)
Halhy_0179	PWY-7094	fatty acid salvage
Halhy_0179	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Halhy_0179	PWY-735	jasmonic acid biosynthesis
Halhy_0179	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Halhy_0182	PWY-6854	ethylene biosynthesis III (microbes)
Halhy_0188	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Halhy_0198	PWY-4381	fatty acid biosynthesis initiation I
Halhy_0198	PWY-5743	3-hydroxypropanoate cycle
Halhy_0198	PWY-5744	glyoxylate assimilation
Halhy_0198	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Halhy_0198	PWY-6679	jadomycin biosynthesis
Halhy_0198	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Halhy_0216	PWY-2723	trehalose degradation V
Halhy_0216	PWY-6317	galactose degradation I (Leloir pathway)
Halhy_0216	PWY-6737	starch degradation V
Halhy_0235	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Halhy_0235	PWY-2161	folate polyglutamylation
Halhy_0235	PWY-2201	folate transformations I
Halhy_0235	PWY-3841	folate transformations II
Halhy_0246	PWY-43	putrescine biosynthesis II
Halhy_0257	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Halhy_0257	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Halhy_0262	PWY-621	sucrose degradation III (sucrose invertase)
Halhy_0275	PWY-2781	<i>cis</i>-zeatin biosynthesis
Halhy_0286	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Halhy_0287	PWY-5350	thiosulfate disproportionation III (rhodanese)
Halhy_0288	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Halhy_0288	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Halhy_0294	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Halhy_0294	PWY-5723	Rubisco shunt
Halhy_0301	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
Halhy_0337	PWY-6891	thiazole biosynthesis II (Bacillus)
Halhy_0337	PWY-6892	thiazole biosynthesis I (E. coli)
Halhy_0337	PWY-7560	methylerythritol phosphate pathway II
Halhy_0350	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Halhy_0350	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Halhy_0350	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Halhy_0350	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Halhy_0350	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Halhy_0350	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Halhy_0350	PWY-7205	CMP phosphorylation
Halhy_0350	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Halhy_0350	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Halhy_0350	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Halhy_0350	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Halhy_0350	PWY-7224	purine deoxyribonucleosides salvage
Halhy_0350	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Halhy_0350	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Halhy_0352	PWY-6703	preQ<sub>0</sub> biosynthesis
Halhy_0353	PWY-4261	glycerol degradation I
Halhy_0403	PWY-381	nitrate reduction II (assimilatory)
Halhy_0403	PWY-5675	nitrate reduction V (assimilatory)
Halhy_0403	PWY-6549	L-glutamine biosynthesis III
Halhy_0403	PWY-6963	ammonia assimilation cycle I
Halhy_0403	PWY-6964	ammonia assimilation cycle II
Halhy_0444	PWY-1281	sulfoacetaldehyde degradation I
Halhy_0444	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Halhy_0444	PWY-5482	pyruvate fermentation to acetate II
Halhy_0444	PWY-5485	pyruvate fermentation to acetate IV
Halhy_0444	PWY-5497	purine nucleobases degradation II (anaerobic)
Halhy_0444	PWY-6637	sulfolactate degradation II
Halhy_0444	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Halhy_0452	PWY-842	starch degradation I
Halhy_0457	PWY-5491	diethylphosphate degradation
Halhy_0465	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Halhy_0465	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Halhy_0465	PWY-6936	seleno-amino acid biosynthesis
Halhy_0465	PWY-702	L-methionine biosynthesis II
Halhy_0512	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Halhy_0512	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Halhy_0512	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Halhy_0512	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Halhy_0592	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Halhy_0594	PWY-4041	&gamma;-glutamyl cycle
Halhy_0594	PWY-5826	hypoglycin biosynthesis
Halhy_0622	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Halhy_0625	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Halhy_0625	PWY-3461	L-tyrosine biosynthesis II
Halhy_0625	PWY-3462	L-phenylalanine biosynthesis II
Halhy_0625	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Halhy_0625	PWY-6120	L-tyrosine biosynthesis III
Halhy_0625	PWY-6627	salinosporamide A biosynthesis
Halhy_0661	PWY-1042	glycolysis IV (plant cytosol)
Halhy_0661	PWY-5484	glycolysis II (from fructose 6-phosphate)
Halhy_0661	PWY-6886	1-butanol autotrophic biosynthesis
Halhy_0661	PWY-6901	superpathway of glucose and xylose degradation
Halhy_0661	PWY-7003	glycerol degradation to butanol
Halhy_0662	PWY-1042	glycolysis IV (plant cytosol)
Halhy_0662	PWY-5484	glycolysis II (from fructose 6-phosphate)
Halhy_0662	PWY-6901	superpathway of glucose and xylose degradation
Halhy_0662	PWY-7003	glycerol degradation to butanol
Halhy_0678	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
Halhy_0678	PWY-581	indole-3-acetate biosynthesis II
Halhy_0678	PWY-7308	acrylonitrile degradation I
Halhy_0679	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
Halhy_0679	PWY-581	indole-3-acetate biosynthesis II
Halhy_0679	PWY-7308	acrylonitrile degradation I
Halhy_0688	PWY-6424	Halhy_0688
Halhy_0705	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Halhy_0705	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Halhy_0750	PWY-6807	xyloglucan degradation II (exoglucanase)
Halhy_0752	PWY-5101	L-isoleucine biosynthesis II
Halhy_0752	PWY-5103	L-isoleucine biosynthesis III
Halhy_0752	PWY-5104	L-isoleucine biosynthesis IV
Halhy_0752	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Halhy_0800	PWY-4981	L-proline biosynthesis II (from arginine)
Halhy_0815	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Halhy_0815	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Halhy_0815	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Halhy_0815	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Halhy_0838	PWY-5663	tetrahydrobiopterin biosynthesis I
Halhy_0838	PWY-5664	tetrahydrobiopterin biosynthesis II
Halhy_0838	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Halhy_0838	PWY-6703	preQ<sub>0</sub> biosynthesis
Halhy_0838	PWY-6983	tetrahydrobiopterin biosynthesis III
Halhy_0838	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Halhy_0859	PWY-1622	formaldehyde assimilation I (serine pathway)
Halhy_0859	PWY-5392	reductive TCA cycle II
Halhy_0859	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Halhy_0859	PWY-5690	TCA cycle II (plants and fungi)
Halhy_0859	PWY-5913	TCA cycle VI (obligate autotrophs)
Halhy_0859	PWY-6728	methylaspartate cycle
Halhy_0859	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Halhy_0859	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Halhy_0859	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Halhy_0921	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Halhy_0921	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Halhy_0921	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Halhy_0921	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Halhy_0923	PWY-5670	epoxysqualene biosynthesis
Halhy_0923	PWY-6098	diploterol and cycloartenol biosynthesis
Halhy_0933	PWY-5667	CDP-diacylglycerol biosynthesis I
Halhy_0933	PWY-5981	CDP-diacylglycerol biosynthesis III
Halhy_0936	PWY-5686	UMP biosynthesis
Halhy_0942	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
Halhy_0969	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Halhy_0969	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Halhy_0990	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Halhy_0998	PWY-5686	UMP biosynthesis
Halhy_1056	PWY-6788	cellulose degradation II (fungi)
Halhy_1062	PWY-7242	D-fructuronate degradation
Halhy_1071	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Halhy_1086	PWY-4381	fatty acid biosynthesis initiation I
Halhy_1086	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Halhy_1086	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Halhy_1092	PWY-2941	L-lysine biosynthesis II
Halhy_1092	PWY-2942	L-lysine biosynthesis III
Halhy_1092	PWY-5097	L-lysine biosynthesis VI
Halhy_1099	PWY-6123	inosine-5'-phosphate biosynthesis I
Halhy_1099	PWY-7234	inosine-5'-phosphate biosynthesis III
Halhy_1125	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Halhy_1125	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Halhy_1152	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Halhy_1152	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Halhy_1153	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Halhy_1153	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Halhy_1153	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Halhy_1153	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Halhy_1155	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Halhy_1155	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Halhy_1156	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Halhy_1156	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Halhy_1156	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Halhy_1170	PWY-5941	glycogen degradation II (eukaryotic)
Halhy_1170	PWY-622	starch biosynthesis
Halhy_1170	PWY-6731	starch degradation III
Halhy_1170	PWY-6737	starch degradation V
Halhy_1170	PWY-7238	sucrose biosynthesis II
Halhy_1176	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Halhy_1187	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Halhy_1187	PWY-6855	chitin degradation I (archaea)
Halhy_1187	PWY-6906	chitin derivatives degradation
Halhy_1188	PWY-6788	cellulose degradation II (fungi)
Halhy_1194	PWY-2582	brassinosteroid biosynthesis II
Halhy_1194	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Halhy_1194	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Halhy_1194	PWY-6948	sitosterol degradation to androstenedione
Halhy_1194	PWY-699	brassinosteroid biosynthesis I
Halhy_1194	PWY-7299	progesterone biosynthesis
Halhy_1197	PWY-4381	fatty acid biosynthesis initiation I
Halhy_1197	PWY-5743	3-hydroxypropanoate cycle
Halhy_1197	PWY-5744	glyoxylate assimilation
Halhy_1197	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Halhy_1197	PWY-6679	jadomycin biosynthesis
Halhy_1197	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Halhy_1221	PWY-5484	glycolysis II (from fructose 6-phosphate)
Halhy_1245	PWY-5491	diethylphosphate degradation
Halhy_1254	PWY-6749	CMP-legionaminate biosynthesis I
Halhy_1265	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Halhy_1265	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Halhy_1275	PWY-7039	phosphatidate metabolism, as a signaling molecule
Halhy_1283	PWY-2941	L-lysine biosynthesis II
Halhy_1283	PWY-2942	L-lysine biosynthesis III
Halhy_1283	PWY-5097	L-lysine biosynthesis VI
Halhy_1283	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Halhy_1283	PWY-6559	spermidine biosynthesis II
Halhy_1283	PWY-6562	norspermidine biosynthesis
Halhy_1283	PWY-7153	grixazone biosynthesis
Halhy_1283	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Halhy_1301	PWY-6167	flavin biosynthesis II (archaea)
Halhy_1301	PWY-6168	flavin biosynthesis III (fungi)
Halhy_1301	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Halhy_1322	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Halhy_1322	PWY-6596	adenosine nucleotides degradation I
Halhy_1322	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Halhy_1343	PWY-6823	molybdenum cofactor biosynthesis
Halhy_1343	PWY-6891	thiazole biosynthesis II (Bacillus)
Halhy_1343	PWY-6892	thiazole biosynthesis I (E. coli)
Halhy_1343	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Halhy_1349	PWY-5743	3-hydroxypropanoate cycle
Halhy_1349	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Halhy_1349	PWY-6728	methylaspartate cycle
Halhy_1349	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Halhy_1360	PWY-1361	benzoyl-CoA degradation I (aerobic)
Halhy_1360	PWY-5109	2-methylbutanoate biosynthesis
Halhy_1360	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Halhy_1360	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Halhy_1360	PWY-5177	glutaryl-CoA degradation
Halhy_1360	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Halhy_1360	PWY-6435	4-hydroxybenzoate biosynthesis V
Halhy_1360	PWY-6583	pyruvate fermentation to butanol I
Halhy_1360	PWY-6863	pyruvate fermentation to hexanol
Halhy_1360	PWY-6883	pyruvate fermentation to butanol II
Halhy_1360	PWY-6944	androstenedione degradation
Halhy_1360	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Halhy_1360	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Halhy_1360	PWY-7007	methyl ketone biosynthesis
Halhy_1360	PWY-7046	4-coumarate degradation (anaerobic)
Halhy_1360	PWY-7094	fatty acid salvage
Halhy_1360	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Halhy_1360	PWY-735	jasmonic acid biosynthesis
Halhy_1360	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Halhy_1367	PWY-2941	L-lysine biosynthesis II
Halhy_1367	PWY-5097	L-lysine biosynthesis VI
Halhy_1387	PWY-5392	reductive TCA cycle II
Halhy_1387	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Halhy_1387	PWY-5690	TCA cycle II (plants and fungi)
Halhy_1387	PWY-5913	TCA cycle VI (obligate autotrophs)
Halhy_1387	PWY-6728	methylaspartate cycle
Halhy_1387	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Halhy_1387	PWY-7254	TCA cycle VII (acetate-producers)
Halhy_1387	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Halhy_1388	PWY-6854	ethylene biosynthesis III (microbes)
Halhy_1420	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Halhy_1426	PWY-5392	reductive TCA cycle II
Halhy_1426	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Halhy_1426	PWY-5690	TCA cycle II (plants and fungi)
Halhy_1426	PWY-5913	TCA cycle VI (obligate autotrophs)
Halhy_1426	PWY-6728	methylaspartate cycle
Halhy_1426	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Halhy_1426	PWY-7254	TCA cycle VII (acetate-producers)
Halhy_1426	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Halhy_1442	PWY-6788	cellulose degradation II (fungi)
Halhy_1470	PWY-4261	glycerol degradation I
Halhy_1474	PWY-4261	glycerol degradation I
Halhy_1567	PWY-5750	itaconate biosynthesis
Halhy_1567	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Halhy_1567	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Halhy_1631	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Halhy_1675	PWY-3781	aerobic respiration I (cytochrome c)
Halhy_1675	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Halhy_1675	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Halhy_1675	PWY-5690	TCA cycle II (plants and fungi)
Halhy_1675	PWY-6728	methylaspartate cycle
Halhy_1675	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Halhy_1675	PWY-7254	TCA cycle VII (acetate-producers)
Halhy_1675	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Halhy_1676	PWY-3781	aerobic respiration I (cytochrome c)
Halhy_1676	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Halhy_1676	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Halhy_1676	PWY-5690	TCA cycle II (plants and fungi)
Halhy_1676	PWY-6728	methylaspartate cycle
Halhy_1676	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Halhy_1676	PWY-7254	TCA cycle VII (acetate-producers)
Halhy_1676	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Halhy_1691	PWY-6454	vancomycin resistance I
Halhy_1691	PWY-6455	vancomycin resistance II
Halhy_1706	PWY-6807	xyloglucan degradation II (exoglucanase)
Halhy_1744	PWY-6823	molybdenum cofactor biosynthesis
Halhy_1791	PWY-5482	pyruvate fermentation to acetate II
Halhy_1791	PWY-5485	pyruvate fermentation to acetate IV
Halhy_1791	PWY-5497	purine nucleobases degradation II (anaerobic)
Halhy_1842	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Halhy_1842	PWY-5723	Rubisco shunt
Halhy_1844	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Halhy_1844	PWY-6148	tetrahydromethanopterin biosynthesis
Halhy_1844	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Halhy_1844	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Halhy_1847	PWY-5958	acridone alkaloid biosynthesis
Halhy_1847	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Halhy_1847	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Halhy_1875	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Halhy_1892	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Halhy_1892	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Halhy_1892	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Halhy_1918	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Halhy_1918	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Halhy_1932	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Halhy_1938	PWY-4381	fatty acid biosynthesis initiation I
Halhy_1970	PWY-6857	retinol biosynthesis
Halhy_1976	PWY-6823	molybdenum cofactor biosynthesis
Halhy_1988	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Halhy_1988	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Halhy_1988	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Halhy_2015	PWY-6871	3-methylbutanol biosynthesis
Halhy_2016	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Halhy_2028	PWY-6349	CDP-archaeol biosynthesis
Halhy_2040	PWY-4983	L-citrulline-nitric oxide cycle
Halhy_2040	PWY-4984	urea cycle
Halhy_2040	PWY-5	canavanine biosynthesis
Halhy_2040	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Halhy_2040	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Halhy_2042	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Halhy_2042	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Halhy_2098	PWY-2201	folate transformations I
Halhy_2098	PWY-3841	folate transformations II
Halhy_2155	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Halhy_2202	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Halhy_2202	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Halhy_2206	PWY-5386	methylglyoxal degradation I
Halhy_2237	PWY-5530	sorbitol biosynthesis II
Halhy_2238	PWY-3781	aerobic respiration I (cytochrome c)
Halhy_2238	PWY-4521	arsenite oxidation I (respiratory)
Halhy_2238	PWY-6692	Fe(II) oxidation
Halhy_2238	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Halhy_2286	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
Halhy_2286	PWY-622	starch biosynthesis
Halhy_2300	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Halhy_2314	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Halhy_2316	PWY-6012	acyl carrier protein metabolism I
Halhy_2316	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Halhy_2322	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Halhy_2334	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Halhy_2334	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Halhy_2334	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Halhy_2334	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Halhy_2334	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Halhy_2334	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Halhy_2334	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Halhy_2334	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Halhy_2347	PWY-5743	3-hydroxypropanoate cycle
Halhy_2347	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Halhy_2347	PWY-6728	methylaspartate cycle
Halhy_2347	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Halhy_2387	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Halhy_2387	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Halhy_2422	PWY-6936	seleno-amino acid biosynthesis
Halhy_2487	PWY-5943	&beta;-carotene biosynthesis
Halhy_2487	PWY-5947	lutein biosynthesis
Halhy_2494	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Halhy_2494	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Halhy_2494	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Halhy_2496	PWY-4202	arsenate detoxification I (glutaredoxin)
Halhy_2496	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Halhy_2496	PWY-6608	guanosine nucleotides degradation III
Halhy_2496	PWY-6609	adenine and adenosine salvage III
Halhy_2496	PWY-6611	adenine and adenosine salvage V
Halhy_2496	PWY-6620	guanine and guanosine salvage
Halhy_2496	PWY-6627	salinosporamide A biosynthesis
Halhy_2496	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Halhy_2496	PWY-7179	purine deoxyribonucleosides degradation I
Halhy_2496	PWY-7179-1	purine deoxyribonucleosides degradation
Halhy_2518	PWY-4381	fatty acid biosynthesis initiation I
Halhy_2534	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Halhy_2542	PWY-5316	nicotine biosynthesis
Halhy_2542	PWY-7342	superpathway of nicotine biosynthesis
Halhy_2597	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Halhy_2608	PWY-4381	fatty acid biosynthesis initiation I
Halhy_2615	PWY-6906	chitin derivatives degradation
Halhy_2615	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Halhy_2615	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Halhy_2623	PWY-5988	wound-induced proteolysis I
Halhy_2623	PWY-6018	seed germination protein turnover
Halhy_2627	PWY-4702	phytate degradation I
Halhy_2629	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Halhy_2629	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Halhy_2631	PWY-6749	CMP-legionaminate biosynthesis I
Halhy_2633	PWY-622	starch biosynthesis
Halhy_2644	PWY-2201	folate transformations I
Halhy_2644	PWY-3841	folate transformations II
Halhy_2654	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Halhy_2658	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
Halhy_2658	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Halhy_2661	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Halhy_2661	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Halhy_2709	PWY-5316	nicotine biosynthesis
Halhy_2709	PWY-5381	pyridine nucleotide cycling (plants)
Halhy_2709	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Halhy_2709	PWY-7342	superpathway of nicotine biosynthesis
Halhy_2715	PWY-1622	formaldehyde assimilation I (serine pathway)
Halhy_2715	PWY-181	photorespiration
Halhy_2715	PWY-2161	folate polyglutamylation
Halhy_2715	PWY-2201	folate transformations I
Halhy_2715	PWY-3661	glycine betaine degradation I
Halhy_2715	PWY-3661-1	glycine betaine degradation II (mammalian)
Halhy_2715	PWY-3841	folate transformations II
Halhy_2715	PWY-5497	purine nucleobases degradation II (anaerobic)
Halhy_2716	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Halhy_2716	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Halhy_2744	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Halhy_2770	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Halhy_2770	PWY-6416	quinate degradation II
Halhy_2770	PWY-6707	gallate biosynthesis
Halhy_2780	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Halhy_2787	PWY-6019	pseudouridine degradation
Halhy_2808	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Halhy_2810	PWY-1042	glycolysis IV (plant cytosol)
Halhy_2810	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Halhy_2810	PWY-5484	glycolysis II (from fructose 6-phosphate)
Halhy_2810	PWY-7385	1,3-propanediol biosynthesis (engineered)
Halhy_2811	PWY-5392	reductive TCA cycle II
Halhy_2811	PWY-5537	pyruvate fermentation to acetate V
Halhy_2811	PWY-5538	pyruvate fermentation to acetate VI
Halhy_2811	PWY-5690	TCA cycle II (plants and fungi)
Halhy_2811	PWY-5913	TCA cycle VI (obligate autotrophs)
Halhy_2811	PWY-6728	methylaspartate cycle
Halhy_2811	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Halhy_2811	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Halhy_2814	PWY-7533	gliotoxin biosynthesis
Halhy_2829	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Halhy_2848	PWY-3341	L-proline biosynthesis III
Halhy_2848	PWY-4981	L-proline biosynthesis II (from arginine)
Halhy_2848	PWY-6344	L-ornithine degradation II (Stickland reaction)
Halhy_2848	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Halhy_2899	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Halhy_2899	PWY-5739	GDP-D-perosamine biosynthesis
Halhy_2899	PWY-5740	GDP-L-colitose biosynthesis
Halhy_2899	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Halhy_2900	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Halhy_2906	PWY-5030	L-histidine degradation III
Halhy_2907	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Halhy_2910	PWY-6700	queuosine biosynthesis
Halhy_2919	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Halhy_2919	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Halhy_2919	PWY-6896	thiamin salvage I
Halhy_2919	PWY-6897	thiamin salvage II
Halhy_2946	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Halhy_2946	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Halhy_2946	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Halhy_2959	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Halhy_2966	PWY-5278	sulfite oxidation III
Halhy_2966	PWY-5340	sulfate activation for sulfonation
Halhy_2966	PWY-6683	sulfate reduction III (assimilatory)
Halhy_2966	PWY-6932	selenate reduction
Halhy_2967	PWY-5278	sulfite oxidation III
Halhy_2967	PWY-5340	sulfate activation for sulfonation
Halhy_2967	PWY-6683	sulfate reduction III (assimilatory)
Halhy_2967	PWY-6932	selenate reduction
Halhy_2968	PWY-5340	sulfate activation for sulfonation
Halhy_2978	PWY-5028	L-histidine degradation II
Halhy_2978	PWY-5030	L-histidine degradation III
Halhy_2979	PWY-5028	L-histidine degradation II
Halhy_2979	PWY-5030	L-histidine degradation III
Halhy_2980	PWY-5028	L-histidine degradation II
Halhy_2980	PWY-5030	L-histidine degradation III
Halhy_2990	PWY-2941	L-lysine biosynthesis II
Halhy_2990	PWY-2942	L-lysine biosynthesis III
Halhy_2990	PWY-5097	L-lysine biosynthesis VI
Halhy_2990	PWY-6559	spermidine biosynthesis II
Halhy_2990	PWY-6562	norspermidine biosynthesis
Halhy_2990	PWY-7153	grixazone biosynthesis
Halhy_2991	PWY-702	L-methionine biosynthesis II
Halhy_2997	PWY-7391	isoprene biosynthesis II (engineered)
Halhy_2997	PWY-922	mevalonate pathway I
Halhy_3007	PWY-1042	glycolysis IV (plant cytosol)
Halhy_3007	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Halhy_3007	PWY-5484	glycolysis II (from fructose 6-phosphate)
Halhy_3007	PWY-5723	Rubisco shunt
Halhy_3007	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Halhy_3007	PWY-6886	1-butanol autotrophic biosynthesis
Halhy_3007	PWY-6901	superpathway of glucose and xylose degradation
Halhy_3007	PWY-7003	glycerol degradation to butanol
Halhy_3007	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Halhy_3007	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Halhy_3042	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Halhy_3042	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Halhy_3071	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Halhy_3071	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Halhy_3099	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Halhy_3103	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Halhy_3105	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Halhy_3110	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Halhy_3119	PWY-7158	L-phenylalanine degradation V
Halhy_3134	PWY-6527	stachyose degradation
Halhy_3136	PWY-6527	stachyose degradation
Halhy_3160	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Halhy_3160	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Halhy_3160	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Halhy_3181	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Halhy_3181	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Halhy_3185	PWY-6610	adenine and adenosine salvage IV
Halhy_3200	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Halhy_3200	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Halhy_3200	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Halhy_3200	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Halhy_3215	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Halhy_3217	PWY-6599	guanine and guanosine salvage II
Halhy_3217	PWY-6609	adenine and adenosine salvage III
Halhy_3217	PWY-6610	adenine and adenosine salvage IV
Halhy_3217	PWY-6620	guanine and guanosine salvage
Halhy_3218	PWY-2301	<i>myo</i>-inositol biosynthesis
Halhy_3218	PWY-4702	phytate degradation I
Halhy_3218	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
Halhy_3234	PWY-4261	glycerol degradation I
Halhy_3234	PWY-6118	glycerol-3-phosphate shuttle
Halhy_3234	PWY-6952	glycerophosphodiester degradation
Halhy_3259	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Halhy_3293	PWY-2941	L-lysine biosynthesis II
Halhy_3293	PWY-2942	L-lysine biosynthesis III
Halhy_3293	PWY-5097	L-lysine biosynthesis VI
Halhy_3299	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Halhy_3319	PWY-4261	glycerol degradation I
Halhy_3326	PWY-5198	factor 420 biosynthesis
Halhy_3338	PWY-3821	galactose degradation III
Halhy_3338	PWY-6317	galactose degradation I (Leloir pathway)
Halhy_3338	PWY-6527	stachyose degradation
Halhy_3353	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Halhy_3353	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Halhy_3354	PWY-2582	brassinosteroid biosynthesis II
Halhy_3354	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Halhy_3354	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Halhy_3354	PWY-6948	sitosterol degradation to androstenedione
Halhy_3354	PWY-699	brassinosteroid biosynthesis I
Halhy_3354	PWY-7299	progesterone biosynthesis
Halhy_3356	PWY-5964	guanylyl molybdenum cofactor biosynthesis
Halhy_3366	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Halhy_3371	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Halhy_3374	PWY-5381	pyridine nucleotide cycling (plants)
Halhy_3374	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Halhy_3377	PWY-5155	&beta;-alanine biosynthesis III
Halhy_3403	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Halhy_3403	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Halhy_3405	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
Halhy_3413	PWY-5686	UMP biosynthesis
Halhy_3457	PWY-3821	galactose degradation III
Halhy_3457	PWY-6317	galactose degradation I (Leloir pathway)
Halhy_3457	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Halhy_3457	PWY-6527	stachyose degradation
Halhy_3457	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Halhy_3457	PWY-7344	UDP-D-galactose biosynthesis
Halhy_3500	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Halhy_3500	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Halhy_3506	PWY-5743	3-hydroxypropanoate cycle
Halhy_3506	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Halhy_3506	PWY-6728	methylaspartate cycle
Halhy_3506	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Halhy_3509	PWY-1042	glycolysis IV (plant cytosol)
Halhy_3509	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Halhy_3509	PWY-5484	glycolysis II (from fructose 6-phosphate)
Halhy_3509	PWY-5723	Rubisco shunt
Halhy_3509	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Halhy_3509	PWY-6886	1-butanol autotrophic biosynthesis
Halhy_3509	PWY-6901	superpathway of glucose and xylose degradation
Halhy_3509	PWY-7003	glycerol degradation to butanol
Halhy_3509	PWY-7124	ethylene biosynthesis V (engineered)
Halhy_3509	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Halhy_3513	PWY-5316	nicotine biosynthesis
Halhy_3513	PWY-7342	superpathway of nicotine biosynthesis
Halhy_3527	PWY-5941	glycogen degradation II (eukaryotic)
Halhy_3527	PWY-622	starch biosynthesis
Halhy_3527	PWY-6731	starch degradation III
Halhy_3527	PWY-6737	starch degradation V
Halhy_3527	PWY-7238	sucrose biosynthesis II
Halhy_3552	PWY-3841	folate transformations II
Halhy_3552	PWY-6614	tetrahydrofolate biosynthesis
Halhy_3573	PWY-6986	alginate degradation
Halhy_3580	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Halhy_3580	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Halhy_3583	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Halhy_3583	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Halhy_3600	PWY-3221	dTDP-L-rhamnose biosynthesis II
Halhy_3600	PWY-6808	dTDP-D-forosamine biosynthesis
Halhy_3600	PWY-6942	dTDP-D-desosamine biosynthesis
Halhy_3600	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Halhy_3600	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Halhy_3600	PWY-6974	dTDP-L-olivose biosynthesis
Halhy_3600	PWY-6976	dTDP-L-mycarose biosynthesis
Halhy_3600	PWY-7104	dTDP-L-megosamine biosynthesis
Halhy_3600	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Halhy_3600	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Halhy_3600	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Halhy_3600	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Halhy_3600	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Halhy_3600	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Halhy_3600	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Halhy_3600	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Halhy_3604	PWY-6454	vancomycin resistance I
Halhy_3604	PWY-6455	vancomycin resistance II
Halhy_3611	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Halhy_3611	PWY-5686	UMP biosynthesis
Halhy_3611	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Halhy_3620	PWY-6164	3-dehydroquinate biosynthesis I
Halhy_3652	PWY-5530	sorbitol biosynthesis II
Halhy_3669	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Halhy_3669	PWY-6855	chitin degradation I (archaea)
Halhy_3669	PWY-6906	chitin derivatives degradation
Halhy_3696	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Halhy_3696	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Halhy_3727	PWY-6807	xyloglucan degradation II (exoglucanase)
Halhy_3757	PWY-6986	alginate degradation
Halhy_3770	PWY-4381	fatty acid biosynthesis initiation I
Halhy_3770	PWY-5743	3-hydroxypropanoate cycle
Halhy_3770	PWY-5744	glyoxylate assimilation
Halhy_3770	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Halhy_3770	PWY-6679	jadomycin biosynthesis
Halhy_3770	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Halhy_3772	PWY-2941	L-lysine biosynthesis II
Halhy_3772	PWY-2942	L-lysine biosynthesis III
Halhy_3772	PWY-5097	L-lysine biosynthesis VI
Halhy_3791	PWY-1361	benzoyl-CoA degradation I (aerobic)
Halhy_3791	PWY-5109	2-methylbutanoate biosynthesis
Halhy_3791	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Halhy_3791	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Halhy_3791	PWY-5177	glutaryl-CoA degradation
Halhy_3791	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Halhy_3791	PWY-6435	4-hydroxybenzoate biosynthesis V
Halhy_3791	PWY-6583	pyruvate fermentation to butanol I
Halhy_3791	PWY-6863	pyruvate fermentation to hexanol
Halhy_3791	PWY-6883	pyruvate fermentation to butanol II
Halhy_3791	PWY-6944	androstenedione degradation
Halhy_3791	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Halhy_3791	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Halhy_3791	PWY-7007	methyl ketone biosynthesis
Halhy_3791	PWY-7046	4-coumarate degradation (anaerobic)
Halhy_3791	PWY-7094	fatty acid salvage
Halhy_3791	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Halhy_3791	PWY-735	jasmonic acid biosynthesis
Halhy_3791	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Halhy_3795	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Halhy_3816	PWY-5530	sorbitol biosynthesis II
Halhy_3829	PWY-6854	ethylene biosynthesis III (microbes)
Halhy_3837	PWY-5344	L-homocysteine biosynthesis
Halhy_3837	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Halhy_3965	PWY-3221	dTDP-L-rhamnose biosynthesis II
Halhy_3965	PWY-6808	dTDP-D-forosamine biosynthesis
Halhy_3965	PWY-6942	dTDP-D-desosamine biosynthesis
Halhy_3965	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Halhy_3965	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Halhy_3965	PWY-6974	dTDP-L-olivose biosynthesis
Halhy_3965	PWY-6976	dTDP-L-mycarose biosynthesis
Halhy_3965	PWY-7104	dTDP-L-megosamine biosynthesis
Halhy_3965	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Halhy_3965	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Halhy_3965	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Halhy_3965	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Halhy_3965	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Halhy_3965	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Halhy_3965	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Halhy_3965	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Halhy_3969	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Halhy_3969	PWY-5686	UMP biosynthesis
Halhy_3969	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Halhy_3970	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Halhy_3970	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Halhy_3970	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Halhy_3998	PWY-4041	&gamma;-glutamyl cycle
Halhy_3998	PWY-5826	hypoglycin biosynthesis
Halhy_4009	PWY-5663	tetrahydrobiopterin biosynthesis I
Halhy_4009	PWY-5664	tetrahydrobiopterin biosynthesis II
Halhy_4009	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Halhy_4009	PWY-6703	preQ<sub>0</sub> biosynthesis
Halhy_4009	PWY-6983	tetrahydrobiopterin biosynthesis III
Halhy_4009	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Halhy_4014	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Halhy_4015	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Halhy_4056	PWY-6823	molybdenum cofactor biosynthesis
Halhy_4076	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Halhy_4092	PWY-723	alkylnitronates degradation
Halhy_4121	PWY-5349	esculetin biosynthesis
Halhy_4121	PWY-6752	<i>o</i>-diquinones biosynthesis
Halhy_4130	PWY-7533	gliotoxin biosynthesis
Halhy_4131	PWY-622	starch biosynthesis
Halhy_4132	PWY-622	starch biosynthesis
Halhy_4143	PWY-7254	TCA cycle VII (acetate-producers)
Halhy_4164	PWY-5743	3-hydroxypropanoate cycle
Halhy_4164	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Halhy_4164	PWY-6728	methylaspartate cycle
Halhy_4164	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Halhy_4179	PWY-7199	pyrimidine deoxyribonucleosides salvage
Halhy_4185	PWY-6174	mevalonate pathway II (archaea)
Halhy_4185	PWY-7391	isoprene biosynthesis II (engineered)
Halhy_4185	PWY-7524	mevalonate pathway III (archaea)
Halhy_4185	PWY-922	mevalonate pathway I
Halhy_4186	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
Halhy_4186	PWY-6174	mevalonate pathway II (archaea)
Halhy_4186	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
Halhy_4186	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
Halhy_4186	PWY-7102	bisabolene biosynthesis
Halhy_4186	PWY-7391	isoprene biosynthesis II (engineered)
Halhy_4186	PWY-7524	mevalonate pathway III (archaea)
Halhy_4186	PWY-7560	methylerythritol phosphate pathway II
Halhy_4186	PWY-922	mevalonate pathway I
Halhy_4191	PWY-4983	L-citrulline-nitric oxide cycle
Halhy_4191	PWY-4984	urea cycle
Halhy_4191	PWY-5	canavanine biosynthesis
Halhy_4191	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Halhy_4191	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Halhy_4192	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Halhy_4192	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Halhy_4194	PWY-5686	UMP biosynthesis
Halhy_4207	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Halhy_4227	PWY-5491	diethylphosphate degradation
Halhy_4255	PWY-6683	sulfate reduction III (assimilatory)
Halhy_4256	PWY-5194	siroheme biosynthesis
Halhy_4256	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Halhy_4276	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Halhy_4282	PWY-2941	L-lysine biosynthesis II
Halhy_4282	PWY-2942	L-lysine biosynthesis III
Halhy_4282	PWY-5097	L-lysine biosynthesis VI
Halhy_4282	PWY-6559	spermidine biosynthesis II
Halhy_4282	PWY-6562	norspermidine biosynthesis
Halhy_4282	PWY-7153	grixazone biosynthesis
Halhy_4283	PWY-6123	inosine-5'-phosphate biosynthesis I
Halhy_4283	PWY-6124	inosine-5'-phosphate biosynthesis II
Halhy_4283	PWY-7234	inosine-5'-phosphate biosynthesis III
Halhy_4284	PWY-3961	phosphopantothenate biosynthesis II
Halhy_4313	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Halhy_4313	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Halhy_4313	PWY-6936	seleno-amino acid biosynthesis
Halhy_4313	PWY-702	L-methionine biosynthesis II
Halhy_4319	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Halhy_4319	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Halhy_4319	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Halhy_4341	PWY-2201	folate transformations I
Halhy_4341	PWY-5497	purine nucleobases degradation II (anaerobic)
Halhy_4348	PWY-3961	phosphopantothenate biosynthesis II
Halhy_4382	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Halhy_4396	PWY-1081	homogalacturonan degradation
Halhy_4396	PWY-7246	pectin degradation II
Halhy_4396	PWY-7248	pectin degradation III
Halhy_4400	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
Halhy_4400	PWY-7248	pectin degradation III
Halhy_4402	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Halhy_4402	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Halhy_4402	PWY-7242	D-fructuronate degradation
Halhy_4402	PWY-7310	D-glucosaminate degradation
Halhy_4423	PWY-43	putrescine biosynthesis II
Halhy_4474	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Halhy_4474	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Halhy_4491	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Halhy_4491	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Halhy_4502	PWY-5367	petroselinate biosynthesis
Halhy_4502	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Halhy_4502	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Halhy_4502	PWY-5989	stearate biosynthesis II (bacteria and plants)
Halhy_4502	PWY-5994	palmitate biosynthesis I (animals and fungi)
Halhy_4502	PWY-6113	superpathway of mycolate biosynthesis
Halhy_4502	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Halhy_4502	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Halhy_4502	PWY-6951	Halhy_4502
Halhy_4502	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Halhy_4502	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Halhy_4502	PWYG-321	mycolate biosynthesis
Halhy_4515	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Halhy_4515	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Halhy_4515	PWY-5989	stearate biosynthesis II (bacteria and plants)
Halhy_4515	PWY-6113	superpathway of mycolate biosynthesis
Halhy_4515	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Halhy_4515	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Halhy_4515	PWY-7096	triclosan resistance
Halhy_4515	PWYG-321	mycolate biosynthesis
Halhy_4528	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Halhy_4528	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Halhy_4539	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Halhy_4553	PWY-5669	phosphatidylethanolamine biosynthesis I
Halhy_4600	PWY-6683	sulfate reduction III (assimilatory)
Halhy_4619	PWY-5674	nitrate reduction IV (dissimilatory)
Halhy_4636	PWY-3121	linamarin degradation
Halhy_4636	PWY-5176	coumarin biosynthesis (via 2-coumarate)
Halhy_4636	PWY-6002	lotaustralin degradation
Halhy_4636	PWY-6788	cellulose degradation II (fungi)
Halhy_4636	PWY-7089	taxiphyllin bioactivation
Halhy_4636	PWY-7091	linustatin bioactivation
Halhy_4636	PWY-7092	neolinustatin bioactivation
Halhy_4640	PWY-6853	ethylene biosynthesis II (microbes)
Halhy_4651	PWY-7052	cyanophycin metabolism
Halhy_4709	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Halhy_4709	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Halhy_4709	PWY-5989	stearate biosynthesis II (bacteria and plants)
Halhy_4709	PWY-5994	palmitate biosynthesis I (animals and fungi)
Halhy_4709	PWY-6113	superpathway of mycolate biosynthesis
Halhy_4709	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Halhy_4709	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Halhy_4709	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Halhy_4709	PWYG-321	mycolate biosynthesis
Halhy_4711	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Halhy_4711	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Halhy_4712	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Halhy_4712	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Halhy_4776	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Halhy_4776	PWY-5686	UMP biosynthesis
Halhy_4776	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Halhy_4777	PWY-1042	glycolysis IV (plant cytosol)
Halhy_4777	PWY-1622	formaldehyde assimilation I (serine pathway)
Halhy_4777	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Halhy_4777	PWY-5484	glycolysis II (from fructose 6-phosphate)
Halhy_4777	PWY-5723	Rubisco shunt
Halhy_4777	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Halhy_4777	PWY-6886	1-butanol autotrophic biosynthesis
Halhy_4777	PWY-6901	superpathway of glucose and xylose degradation
Halhy_4777	PWY-7003	glycerol degradation to butanol
Halhy_4777	PWY-7124	ethylene biosynthesis V (engineered)
Halhy_4777	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Halhy_4779	PWY-5392	reductive TCA cycle II
Halhy_4779	PWY-5537	pyruvate fermentation to acetate V
Halhy_4779	PWY-5538	pyruvate fermentation to acetate VI
Halhy_4779	PWY-5690	TCA cycle II (plants and fungi)
Halhy_4779	PWY-5913	TCA cycle VI (obligate autotrophs)
Halhy_4779	PWY-6728	methylaspartate cycle
Halhy_4779	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Halhy_4779	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Halhy_4800	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Halhy_4800	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Halhy_4808	PWY-6168	flavin biosynthesis III (fungi)
Halhy_4808	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Halhy_4829	PWY-6614	tetrahydrofolate biosynthesis
Halhy_4837	PWY-3861	mannitol degradation II
Halhy_4837	PWY-3881	mannitol biosynthesis
Halhy_4837	PWY-5659	GDP-mannose biosynthesis
Halhy_4837	PWY-7456	mannan degradation
Halhy_4837	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Halhy_4849	PWY-381	nitrate reduction II (assimilatory)
Halhy_4849	PWY-5675	nitrate reduction V (assimilatory)
Halhy_4849	PWY-6549	L-glutamine biosynthesis III
Halhy_4849	PWY-6963	ammonia assimilation cycle I
Halhy_4849	PWY-6964	ammonia assimilation cycle II
Halhy_4853	PWY-4981	L-proline biosynthesis II (from arginine)
Halhy_4868	PWY-3841	folate transformations II
Halhy_4868	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Halhy_4868	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Halhy_4868	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Halhy_4868	PWY-7199	pyrimidine deoxyribonucleosides salvage
Halhy_4868	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Halhy_4876	PWY-3781	aerobic respiration I (cytochrome c)
Halhy_4876	PWY-4521	arsenite oxidation I (respiratory)
Halhy_4876	PWY-6692	Fe(II) oxidation
Halhy_4876	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Halhy_4898	PWY-6807	xyloglucan degradation II (exoglucanase)
Halhy_4917	PWY-6788	cellulose degradation II (fungi)
Halhy_4945	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Halhy_4994	PWY-5958	acridone alkaloid biosynthesis
Halhy_4994	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Halhy_4994	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Halhy_4995	PWY-5958	acridone alkaloid biosynthesis
Halhy_4995	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Halhy_4995	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Halhy_4999	PWY-6123	inosine-5'-phosphate biosynthesis I
Halhy_4999	PWY-6124	inosine-5'-phosphate biosynthesis II
Halhy_4999	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Halhy_4999	PWY-7234	inosine-5'-phosphate biosynthesis III
Halhy_5000	PWY-1361	benzoyl-CoA degradation I (aerobic)
Halhy_5000	PWY-2361	3-oxoadipate degradation
Halhy_5000	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
Halhy_5004	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
Halhy_5049	PWY-3341	L-proline biosynthesis III
Halhy_5049	PWY-4981	L-proline biosynthesis II (from arginine)
Halhy_5049	PWY-6344	L-ornithine degradation II (Stickland reaction)
Halhy_5066	PWY-5381	pyridine nucleotide cycling (plants)
Halhy_5066	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Halhy_5066	PWY-6596	adenosine nucleotides degradation I
Halhy_5066	PWY-6606	guanosine nucleotides degradation II
Halhy_5066	PWY-6607	guanosine nucleotides degradation I
Halhy_5066	PWY-6608	guanosine nucleotides degradation III
Halhy_5066	PWY-7185	UTP and CTP dephosphorylation I
Halhy_5099	PWY-5033	nicotinate degradation II
Halhy_5099	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Halhy_5099	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Halhy_5099	PWY-6993	nicotine degradation II (pyrrolidine pathway)
Halhy_5099	PWY-722	nicotinate degradation I
Halhy_5125	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Halhy_5125	PWY-6148	tetrahydromethanopterin biosynthesis
Halhy_5125	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Halhy_5125	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Halhy_5127	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Halhy_5127	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Halhy_5182	PWY-5642	2,4-dinitrotoluene degradation
Halhy_5182	PWY-6373	acrylate degradation
Halhy_5196	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Halhy_5196	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Halhy_5196	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Halhy_5228	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Halhy_5238	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Halhy_5239	PWY-1042	glycolysis IV (plant cytosol)
Halhy_5239	PWY-5484	glycolysis II (from fructose 6-phosphate)
Halhy_5239	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Halhy_5239	PWY-7003	glycerol degradation to butanol
Halhy_5287	PWY-5372	carbon tetrachloride degradation II
Halhy_5287	PWY-6780	hydrogen production VI
Halhy_5315	PWY-4261	glycerol degradation I
Halhy_5320	PWY-4202	arsenate detoxification I (glutaredoxin)
Halhy_5329	PWY-1881	formate oxidation to CO<sub>2</sub>
Halhy_5329	PWY-5497	purine nucleobases degradation II (anaerobic)
Halhy_5329	PWY-6696	oxalate degradation III
Halhy_5331	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Halhy_5331	PWY-6549	L-glutamine biosynthesis III
Halhy_5331	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Halhy_5331	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Halhy_5360	PWY-6829	tRNA methylation (yeast)
Halhy_5360	PWY-7285	methylwyosine biosynthesis
Halhy_5360	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Halhy_5370	PWY-2161	folate polyglutamylation
Halhy_5376	PWY-1361	benzoyl-CoA degradation I (aerobic)
Halhy_5376	PWY-5109	2-methylbutanoate biosynthesis
Halhy_5376	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Halhy_5376	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Halhy_5376	PWY-5177	glutaryl-CoA degradation
Halhy_5376	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Halhy_5376	PWY-6435	4-hydroxybenzoate biosynthesis V
Halhy_5376	PWY-6583	pyruvate fermentation to butanol I
Halhy_5376	PWY-6863	pyruvate fermentation to hexanol
Halhy_5376	PWY-6883	pyruvate fermentation to butanol II
Halhy_5376	PWY-6944	androstenedione degradation
Halhy_5376	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Halhy_5376	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Halhy_5376	PWY-7007	methyl ketone biosynthesis
Halhy_5376	PWY-7046	4-coumarate degradation (anaerobic)
Halhy_5376	PWY-7094	fatty acid salvage
Halhy_5376	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Halhy_5376	PWY-735	jasmonic acid biosynthesis
Halhy_5376	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Halhy_5391	PWY-6123	inosine-5'-phosphate biosynthesis I
Halhy_5391	PWY-6124	inosine-5'-phosphate biosynthesis II
Halhy_5391	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Halhy_5391	PWY-7234	inosine-5'-phosphate biosynthesis III
Halhy_5404	PWY-6807	xyloglucan degradation II (exoglucanase)
Halhy_5443	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Halhy_5446	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
Halhy_5456	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Halhy_5456	PWY-5739	GDP-D-perosamine biosynthesis
Halhy_5456	PWY-5740	GDP-L-colitose biosynthesis
Halhy_5456	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Halhy_5457	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Halhy_5523	PWY-5386	methylglyoxal degradation I
Halhy_5525	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Halhy_5538	PWY-6317	galactose degradation I (Leloir pathway)
Halhy_5538	PWY-6527	stachyose degradation
Halhy_5539	PWY-7456	mannan degradation
Halhy_5540	PWY-7456	mannan degradation
Halhy_5551	PWY-5344	L-homocysteine biosynthesis
Halhy_5566	PWY-6167	flavin biosynthesis II (archaea)
Halhy_5566	PWY-6168	flavin biosynthesis III (fungi)
Halhy_5567	PWY-6167	flavin biosynthesis II (archaea)
Halhy_5567	PWY-6168	flavin biosynthesis III (fungi)
Halhy_5567	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Halhy_5599	PWY-4841	UDP-&alpha;-D-glucuronate biosynthesis (from <i>myo</i>-inositol)
Halhy_5610	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Halhy_5610	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Halhy_5629	PWY-4381	fatty acid biosynthesis initiation I
Halhy_5629	PWY-5743	3-hydroxypropanoate cycle
Halhy_5629	PWY-5744	glyoxylate assimilation
Halhy_5629	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Halhy_5629	PWY-6679	jadomycin biosynthesis
Halhy_5629	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Halhy_5651	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Halhy_5651	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Halhy_5666	PWY-5506	methanol oxidation to formaldehyde IV
Halhy_5688	PWY-3841	folate transformations II
Halhy_5688	PWY-6614	tetrahydrofolate biosynthesis
Halhy_5692	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Halhy_5692	PWY-7177	UTP and CTP dephosphorylation II
Halhy_5692	PWY-7185	UTP and CTP dephosphorylation I
Halhy_5771	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Halhy_5771	PWY-2201	folate transformations I
Halhy_5771	PWY-3841	folate transformations II
Halhy_5771	PWY-5030	L-histidine degradation III
Halhy_5771	PWY-5497	purine nucleobases degradation II (anaerobic)
Halhy_5771	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Halhy_5777	PWY-7456	mannan degradation
Halhy_5786	PWY-6840	homoglutathione biosynthesis
Halhy_5786	PWY-7255	ergothioneine biosynthesis I (bacteria)
Halhy_5799	PWY-5392	reductive TCA cycle II
Halhy_5799	PWY-5537	pyruvate fermentation to acetate V
Halhy_5799	PWY-5538	pyruvate fermentation to acetate VI
Halhy_5799	PWY-5690	TCA cycle II (plants and fungi)
Halhy_5799	PWY-5913	TCA cycle VI (obligate autotrophs)
Halhy_5799	PWY-6728	methylaspartate cycle
Halhy_5799	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Halhy_5799	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Halhy_5806	PWY-6749	CMP-legionaminate biosynthesis I
Halhy_5808	PWY-6823	molybdenum cofactor biosynthesis
Halhy_5808	PWY-6891	thiazole biosynthesis II (Bacillus)
Halhy_5808	PWY-6892	thiazole biosynthesis I (E. coli)
Halhy_5808	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Halhy_5818	PWY-1042	glycolysis IV (plant cytosol)
Halhy_5818	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Halhy_5818	PWY-5484	glycolysis II (from fructose 6-phosphate)
Halhy_5818	PWY-5723	Rubisco shunt
Halhy_5818	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Halhy_5818	PWY-6886	1-butanol autotrophic biosynthesis
Halhy_5818	PWY-6901	superpathway of glucose and xylose degradation
Halhy_5818	PWY-7003	glycerol degradation to butanol
Halhy_5818	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Halhy_5818	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Halhy_5879	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Halhy_5879	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Halhy_5881	PWY-1042	glycolysis IV (plant cytosol)
Halhy_5881	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Halhy_5881	PWY-5484	glycolysis II (from fructose 6-phosphate)
Halhy_5881	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Halhy_5881	PWY-7385	1,3-propanediol biosynthesis (engineered)
Halhy_5884	PWY-6683	sulfate reduction III (assimilatory)
Halhy_5885	PWY-5194	siroheme biosynthesis
Halhy_5885	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Halhy_5886	PWY-5194	siroheme biosynthesis
Halhy_5886	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Halhy_5888	PWY-101	photosynthesis light reactions
Halhy_5888	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Halhy_5946	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Halhy_5948	PWY-7193	pyrimidine ribonucleosides salvage I
Halhy_5951	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Halhy_5952	PWY-6871	3-methylbutanol biosynthesis
Halhy_5956	PWY-7371	1,4-dihydroxy-6-naphthoate biosynthesis II
Halhy_5956	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
Halhy_5958	PWY-5198	factor 420 biosynthesis
Halhy_5960	PWY-5101	L-isoleucine biosynthesis II
Halhy_5960	PWY-5103	L-isoleucine biosynthesis III
Halhy_5960	PWY-5104	L-isoleucine biosynthesis IV
Halhy_5960	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Halhy_5969	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Halhy_5970	PWY-3801	sucrose degradation II (sucrose synthase)
Halhy_5970	PWY-5054	sorbitol biosynthesis I
Halhy_5970	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Halhy_5970	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Halhy_5970	PWY-5659	GDP-mannose biosynthesis
Halhy_5970	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Halhy_5970	PWY-621	sucrose degradation III (sucrose invertase)
Halhy_5970	PWY-622	starch biosynthesis
Halhy_5970	PWY-6531	mannitol cycle
Halhy_5970	PWY-6981	chitin biosynthesis
Halhy_5970	PWY-7238	sucrose biosynthesis II
Halhy_5970	PWY-7347	sucrose biosynthesis III
Halhy_5970	PWY-7385	1,3-propanediol biosynthesis (engineered)
Halhy_5974	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
Halhy_5975	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
Halhy_5975	PWY-5389	3-methylthiopropanoate biosynthesis
Halhy_5983	PWY-6902	chitin degradation II
Halhy_5996	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Halhy_5999	PWY-4041	&gamma;-glutamyl cycle
Halhy_5999	PWY-5826	hypoglycin biosynthesis
Halhy_6020	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Halhy_6020	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Halhy_6035	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Halhy_6035	PWY-7118	chitin degradation to ethanol
Halhy_6071	PWY-5686	UMP biosynthesis
Halhy_6081	PWY-6012	acyl carrier protein metabolism I
Halhy_6121	PWY-4381	fatty acid biosynthesis initiation I
Halhy_6126	PWY-5913	TCA cycle VI (obligate autotrophs)
Halhy_6126	PWY-6549	L-glutamine biosynthesis III
Halhy_6126	PWY-6728	methylaspartate cycle
Halhy_6126	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Halhy_6126	PWY-7124	ethylene biosynthesis V (engineered)
Halhy_6126	PWY-7254	TCA cycle VII (acetate-producers)
Halhy_6126	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Halhy_6148	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Halhy_6149	PWY-2941	L-lysine biosynthesis II
Halhy_6149	PWY-2942	L-lysine biosynthesis III
Halhy_6149	PWY-5097	L-lysine biosynthesis VI
Halhy_6149	PWY-6559	spermidine biosynthesis II
Halhy_6149	PWY-6562	norspermidine biosynthesis
Halhy_6149	PWY-7153	grixazone biosynthesis
Halhy_6178	PWY-6654	phosphopantothenate biosynthesis III
Halhy_6242	PWY-6123	inosine-5'-phosphate biosynthesis I
Halhy_6242	PWY-6124	inosine-5'-phosphate biosynthesis II
Halhy_6242	PWY-7234	inosine-5'-phosphate biosynthesis III
Halhy_6249	PWY-7242	D-fructuronate degradation
Halhy_6276	PWY-7533	gliotoxin biosynthesis
Halhy_6285	PWY-3221	dTDP-L-rhamnose biosynthesis II
Halhy_6285	PWY-6808	dTDP-D-forosamine biosynthesis
Halhy_6285	PWY-6942	dTDP-D-desosamine biosynthesis
Halhy_6285	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Halhy_6285	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Halhy_6285	PWY-6974	dTDP-L-olivose biosynthesis
Halhy_6285	PWY-6976	dTDP-L-mycarose biosynthesis
Halhy_6285	PWY-7104	dTDP-L-megosamine biosynthesis
Halhy_6285	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Halhy_6285	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Halhy_6285	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Halhy_6285	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Halhy_6285	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Halhy_6285	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Halhy_6285	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Halhy_6285	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Halhy_6291	PWY-5686	UMP biosynthesis
Halhy_6314	PWY-5839	menaquinol-7 biosynthesis
Halhy_6314	PWY-5844	menaquinol-9 biosynthesis
Halhy_6314	PWY-5849	menaquinol-6 biosynthesis
Halhy_6314	PWY-5890	menaquinol-10 biosynthesis
Halhy_6314	PWY-5891	menaquinol-11 biosynthesis
Halhy_6314	PWY-5892	menaquinol-12 biosynthesis
Halhy_6314	PWY-5895	menaquinol-13 biosynthesis
Halhy_6322	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Halhy_6322	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Halhy_6325	PWY-6556	pyrimidine ribonucleosides salvage II
Halhy_6325	PWY-7181	pyrimidine deoxyribonucleosides degradation
Halhy_6325	PWY-7193	pyrimidine ribonucleosides salvage I
Halhy_6325	PWY-7199	pyrimidine deoxyribonucleosides salvage
Halhy_6332	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Halhy_6332	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Halhy_6335	PWY-6562	norspermidine biosynthesis
Halhy_6348	PWY-282	cuticular wax biosynthesis
Halhy_6363	PWY-6823	molybdenum cofactor biosynthesis
Halhy_6363	PWY-6891	thiazole biosynthesis II (Bacillus)
Halhy_6363	PWY-6892	thiazole biosynthesis I (E. coli)
Halhy_6363	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Halhy_6364	PWY-6823	molybdenum cofactor biosynthesis
Halhy_6372	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Halhy_6372	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Halhy_6380	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Halhy_6380	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Halhy_6380	PWY-6268	adenosylcobalamin salvage from cobalamin
Halhy_6380	PWY-6269	adenosylcobalamin salvage from cobinamide II
Halhy_6381	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
Halhy_6381	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Halhy_6382	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Halhy_6408	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Halhy_6408	PWY-7494	choline degradation IV
Halhy_6424	PWY-6168	flavin biosynthesis III (fungi)
Halhy_6424	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Halhy_6500	PWY-3821	galactose degradation III
Halhy_6500	PWY-6317	galactose degradation I (Leloir pathway)
Halhy_6500	PWY-6527	stachyose degradation
Halhy_6502	PWY-5686	UMP biosynthesis
Halhy_6505	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Halhy_6505	PWY-6167	flavin biosynthesis II (archaea)
Halhy_6505	PWY-6168	flavin biosynthesis III (fungi)
Halhy_6515	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Halhy_6515	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Halhy_6515	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Halhy_6515	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Halhy_6516	PWY-5913	TCA cycle VI (obligate autotrophs)
Halhy_6516	PWY-6549	L-glutamine biosynthesis III
Halhy_6516	PWY-6728	methylaspartate cycle
Halhy_6516	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Halhy_6516	PWY-7124	ethylene biosynthesis V (engineered)
Halhy_6516	PWY-7254	TCA cycle VII (acetate-producers)
Halhy_6516	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Halhy_6519	PWY-5147	oleate biosynthesis I (plants)
Halhy_6520	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Halhy_6523	PWY-5057	L-valine degradation II
Halhy_6523	PWY-5076	L-leucine degradation III
Halhy_6523	PWY-5078	L-isoleucine degradation II
Halhy_6523	PWY-5101	L-isoleucine biosynthesis II
Halhy_6523	PWY-5103	L-isoleucine biosynthesis III
Halhy_6523	PWY-5104	L-isoleucine biosynthesis IV
Halhy_6523	PWY-5108	L-isoleucine biosynthesis V
Halhy_6524	PWY-5101	L-isoleucine biosynthesis II
Halhy_6524	PWY-5103	L-isoleucine biosynthesis III
Halhy_6524	PWY-5104	L-isoleucine biosynthesis IV
Halhy_6524	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Halhy_6524	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Halhy_6524	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Halhy_6524	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Halhy_6525	PWY-5101	L-isoleucine biosynthesis II
Halhy_6525	PWY-5103	L-isoleucine biosynthesis III
Halhy_6525	PWY-5104	L-isoleucine biosynthesis IV
Halhy_6525	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Halhy_6525	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Halhy_6525	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Halhy_6525	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Halhy_6526	PWY-5101	L-isoleucine biosynthesis II
Halhy_6526	PWY-5103	L-isoleucine biosynthesis III
Halhy_6526	PWY-5104	L-isoleucine biosynthesis IV
Halhy_6526	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Halhy_6546	PWY-6902	chitin degradation II
Halhy_6547	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Halhy_6547	PWY-6855	chitin degradation I (archaea)
Halhy_6547	PWY-6906	chitin derivatives degradation
