Halru_0023 PWY-1861 formaldehyde assimilation II (RuMP Cycle) Halru_0023 PWY-5723 Rubisco shunt Halru_0025 PWY-5123 trans, trans-farnesyl diphosphate biosynthesis Halru_0025 PWY-6174 mevalonate pathway II (archaea) Halru_0025 PWY-6383 mono-trans, poly-cis decaprenyl phosphate biosynthesis Halru_0025 PWY-6859 all-trans-farnesol biosynthesis Halru_0025 PWY-7102 bisabolene biosynthesis Halru_0025 PWY-7391 isoprene biosynthesis II (engineered) Halru_0025 PWY-7524 mevalonate pathway III (archaea) Halru_0025 PWY-7560 methylerythritol phosphate pathway II Halru_0025 PWY-922 mevalonate pathway I Halru_0032 PWY-6749 CMP-legionaminate biosynthesis I Halru_0039 PWY-6899 base-degraded thiamin salvage Halru_0039 PWY-7356 thiamin salvage IV (yeast) Halru_0088 PWY-40 putrescine biosynthesis I Halru_0088 PWY-43 putrescine biosynthesis II Halru_0088 PWY-6305 putrescine biosynthesis IV Halru_0088 PWY-6834 spermidine biosynthesis III Halru_0093 PWY-3801 sucrose degradation II (sucrose synthase) Halru_0093 PWY-5054 sorbitol biosynthesis I Halru_0093 PWY-5384 sucrose degradation IV (sucrose phosphorylase) Halru_0093 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II Halru_0093 PWY-5659 GDP-mannose biosynthesis Halru_0093 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Halru_0093 PWY-621 sucrose degradation III (sucrose invertase) Halru_0093 PWY-622 starch biosynthesis Halru_0093 PWY-6531 mannitol cycle Halru_0093 PWY-6981 chitin biosynthesis Halru_0093 PWY-7238 sucrose biosynthesis II Halru_0093 PWY-7347 sucrose biosynthesis III Halru_0093 PWY-7385 1,3-propanediol biosynthesis (engineered) Halru_0115 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) Halru_0115 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) Halru_0115 PWY-6896 thiamin salvage I Halru_0115 PWY-6897 thiamin salvage II Halru_0119 PWY-6823 molybdenum cofactor biosynthesis Halru_0121 PWY-5381 pyridine nucleotide cycling (plants) Halru_0124 PWY-4981 L-proline biosynthesis II (from arginine) Halru_0150 PWY-6689 tRNA splicing Halru_0166 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) Halru_0166 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) Halru_0166 PWY-7382 lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast) Halru_0171 PWY-5046 2-oxoisovalerate decarboxylation to isobutanoyl-CoA Halru_0171 PWY-5084 2-oxoglutarate decarboxylation to succinyl-CoA Halru_0246 PWY-5041 S-adenosyl-L-methionine cycle II Halru_0270 PWY-6167 flavin biosynthesis II (archaea) Halru_0270 PWY-6168 flavin biosynthesis III (fungi) Halru_0270 PWY-7219 adenosine ribonucleotides de novo biosynthesis Halru_0361 PWY-6167 flavin biosynthesis II (archaea) Halru_0396 PWY-4983 L-citrulline-nitric oxide cycle Halru_0396 PWY-4984 urea cycle Halru_0396 PWY-5 canavanine biosynthesis Halru_0396 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Halru_0396 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Halru_0397 PWY-4983 L-citrulline-nitric oxide cycle Halru_0397 PWY-4984 urea cycle Halru_0397 PWY-5 canavanine biosynthesis Halru_0397 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Halru_0397 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Halru_0400 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Halru_0400 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Halru_0401 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Halru_0401 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Halru_0404 PWY-4981 L-proline biosynthesis II (from arginine) Halru_0404 PWY-4984 urea cycle Halru_0404 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Halru_0413 PWY-5344 L-homocysteine biosynthesis Halru_0415 PWY-7380 biotin biosynthesis from 8-amino-7-oxononanoate II Halru_0416 PWY-5344 L-homocysteine biosynthesis Halru_0416 PWY-7174 S-methyl-5-thio-α-D-ribose 1-phosphate degradation II Halru_0441 PWY-6902 chitin degradation II Halru_0455 PWY-7165 L-ascorbate biosynthesis VI (engineered pathway) Halru_0512 PWY-6910 hydroxymethylpyrimidine salvage Halru_0512 PWY-7356 thiamin salvage IV (yeast) Halru_0512 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast) Halru_0513 PWY-6832 2-aminoethylphosphonate degradation II Halru_0536 PWY-6832 2-aminoethylphosphonate degradation II Halru_0597 PWY-6703 preQ0 biosynthesis Halru_0617 PWY-7335 UDP-N-acetyl-α-D-mannosaminouronate biosynthesis Halru_0651 PWY-6123 inosine-5'-phosphate biosynthesis I Halru_0651 PWY-6124 inosine-5'-phosphate biosynthesis II Halru_0651 PWY-7219 adenosine ribonucleotides de novo biosynthesis Halru_0651 PWY-7234 inosine-5'-phosphate biosynthesis III Halru_0652 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Halru_0652 PWY-6123 inosine-5'-phosphate biosynthesis I Halru_0652 PWY-6124 inosine-5'-phosphate biosynthesis II Halru_0652 PWY-6613 tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate Halru_0652 PWY-7234 inosine-5'-phosphate biosynthesis III Halru_0656 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Halru_0656 PWY-5686 UMP biosynthesis Halru_0656 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Halru_0659 PWY-5083 NAD/NADH phosphorylation and dephosphorylation Halru_0659 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) Halru_0659 PWY-7269 NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast) Halru_0660 PWY-5123 trans, trans-farnesyl diphosphate biosynthesis Halru_0660 PWY-6174 mevalonate pathway II (archaea) Halru_0660 PWY-6383 mono-trans, poly-cis decaprenyl phosphate biosynthesis Halru_0660 PWY-6859 all-trans-farnesol biosynthesis Halru_0660 PWY-7102 bisabolene biosynthesis Halru_0660 PWY-7391 isoprene biosynthesis II (engineered) Halru_0660 PWY-7524 mevalonate pathway III (archaea) Halru_0660 PWY-7560 methylerythritol phosphate pathway II Halru_0660 PWY-922 mevalonate pathway I Halru_0671 PWY-7221 guanosine ribonucleotides de novo biosynthesis Halru_0672 PWY-7176 UTP and CTP de novo biosynthesis Halru_0672 PWY-7177 UTP and CTP dephosphorylation II Halru_0672 PWY-7185 UTP and CTP dephosphorylation I Halru_0675 PWY-6700 queuosine biosynthesis Halru_0675 PWY-6711 archaeosine biosynthesis Halru_0679 PWY-6700 queuosine biosynthesis Halru_0679 PWY-6711 archaeosine biosynthesis Halru_0711 PWY-5484 glycolysis II (from fructose 6-phosphate) Halru_0719 PWY-4381 fatty acid biosynthesis initiation I Halru_0719 PWY-5743 3-hydroxypropanoate cycle Halru_0719 PWY-5744 glyoxylate assimilation Halru_0719 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Halru_0719 PWY-6679 jadomycin biosynthesis Halru_0719 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Halru_0721 PWY-4202 arsenate detoxification I (glutaredoxin) Halru_0721 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation Halru_0721 PWY-6608 guanosine nucleotides degradation III Halru_0721 PWY-6609 adenine and adenosine salvage III Halru_0721 PWY-6611 adenine and adenosine salvage V Halru_0721 PWY-6620 guanine and guanosine salvage Halru_0721 PWY-6627 salinosporamide A biosynthesis Halru_0721 PWY-6644 fluoroacetate and fluorothreonine biosynthesis Halru_0721 PWY-7179 purine deoxyribonucleosides degradation I Halru_0721 PWY-7179-1 purine deoxyribonucleosides degradation Halru_0752 PWY-7219 adenosine ribonucleotides de novo biosynthesis Halru_0775 PWY-7391 isoprene biosynthesis II (engineered) Halru_0775 PWY-922 mevalonate pathway I Halru_0779 PWY-5083 NAD/NADH phosphorylation and dephosphorylation Halru_0779 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) Halru_0779 PWY-7269 NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast) Halru_0786 PWY-6672 cis-genanyl-CoA degradation Halru_0786 PWY-7118 chitin degradation to ethanol Halru_0789 PWY-5743 3-hydroxypropanoate cycle Halru_0789 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Halru_0789 PWY-6728 methylaspartate cycle Halru_0789 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Halru_0795 PWY-3781 aerobic respiration I (cytochrome c) Halru_0795 PWY-4302 aerobic respiration III (alternative oxidase pathway) Halru_0795 PWY-5083 NAD/NADH phosphorylation and dephosphorylation Halru_0795 PWY-6692 Fe(II) oxidation Halru_0808 PWY-6167 flavin biosynthesis II (archaea) Halru_0808 PWY-6168 flavin biosynthesis III (fungi) Halru_0811 PWY-6167 flavin biosynthesis II (archaea) Halru_0811 PWY-6168 flavin biosynthesis III (fungi) Halru_0815 PWY-7180 2'-deoxy-α-D-ribose 1-phosphate degradation Halru_0850 PWY-5381 pyridine nucleotide cycling (plants) Halru_0850 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation Halru_0850 PWY-6596 adenosine nucleotides degradation I Halru_0850 PWY-6606 guanosine nucleotides degradation II Halru_0850 PWY-6607 guanosine nucleotides degradation I Halru_0850 PWY-6608 guanosine nucleotides degradation III Halru_0850 PWY-7185 UTP and CTP dephosphorylation I Halru_0855 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Halru_0875 PWY-5350 thiosulfate disproportionation III (rhodanese) Halru_0882 PWY-1361 benzoyl-CoA degradation I (aerobic) Halru_0882 PWY-5109 2-methylbutanoate biosynthesis Halru_0882 PWY-5136 fatty acid β-oxidation II (peroxisome) Halru_0882 PWY-5138 unsaturated, even numbered fatty acid β-oxidation Halru_0882 PWY-5177 glutaryl-CoA degradation Halru_0882 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Halru_0882 PWY-6435 4-hydroxybenzoate biosynthesis V Halru_0882 PWY-6583 pyruvate fermentation to butanol I Halru_0882 PWY-6863 pyruvate fermentation to hexanol Halru_0882 PWY-6883 pyruvate fermentation to butanol II Halru_0882 PWY-6944 androstenedione degradation Halru_0882 PWY-6945 cholesterol degradation to androstenedione I (cholesterol oxidase) Halru_0882 PWY-6946 cholesterol degradation to androstenedione II (cholesterol dehydrogenase) Halru_0882 PWY-7007 methyl ketone biosynthesis Halru_0882 PWY-7046 4-coumarate degradation (anaerobic) Halru_0882 PWY-7094 fatty acid salvage Halru_0882 PWY-7216 (R)- and (S)-3-hydroxybutanoate biosynthesis Halru_0882 PWY-735 jasmonic acid biosynthesis Halru_0882 PWY-7401 crotonate fermentation (to acetate and cyclohexane carboxylate) Halru_0929 PWY-6349 CDP-archaeol biosynthesis Halru_0933 PWY-6890 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis Halru_0939 PWY-5913 TCA cycle VI (obligate autotrophs) Halru_0939 PWY-6549 L-glutamine biosynthesis III Halru_0939 PWY-6728 methylaspartate cycle Halru_0939 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Halru_0939 PWY-7124 ethylene biosynthesis V (engineered) Halru_0939 PWY-7254 TCA cycle VII (acetate-producers) Halru_0939 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) Halru_0960 PWY-5028 L-histidine degradation II Halru_0960 PWY-5030 L-histidine degradation III Halru_0962 PWY-5028 L-histidine degradation II Halru_0962 PWY-5030 L-histidine degradation III Halru_0963 PWY-5028 L-histidine degradation II Halru_0963 PWY-5030 L-histidine degradation III Halru_0968 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Halru_0968 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Halru_0968 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Halru_0968 PWY-7197 pyrimidine deoxyribonucleotide phosphorylation Halru_0968 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Halru_0968 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Halru_0971 PWY-5198 factor 420 biosynthesis Halru_0972 PWY-5198 factor 420 biosynthesis Halru_0981 PWY-7153 grixazone biosynthesis Halru_0983 PWY-7285 methylwyosine biosynthesis Halru_0983 PWY-7286 7-(3-amino-3-carboxypropyl)-wyosine biosynthesis Halru_0985 PWY-181 photorespiration Halru_1009 PWY-7335 UDP-N-acetyl-α-D-mannosaminouronate biosynthesis Halru_1027 PWY-6749 CMP-legionaminate biosynthesis I Halru_1029 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II Halru_1030 PWY-6749 CMP-legionaminate biosynthesis I Halru_1033 PWY-7346 UDP-α-D-glucuronate biosynthesis (from UDP-glucose) Halru_1038 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Halru_1050 PWY-5083 NAD/NADH phosphorylation and dephosphorylation Halru_1050 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) Halru_1050 PWY-7269 NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast) Halru_1118 PWY-1042 glycolysis IV (plant cytosol) Halru_1118 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) Halru_1118 PWY-5484 glycolysis II (from fructose 6-phosphate) Halru_1118 PWY-5723 Rubisco shunt Halru_1118 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Halru_1118 PWY-6886 1-butanol autotrophic biosynthesis Halru_1118 PWY-6901 superpathway of glucose and xylose degradation Halru_1118 PWY-7003 glycerol degradation to butanol Halru_1118 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) Halru_1118 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) Halru_1120 PWY-3581 (S)-reticuline biosynthesis I Halru_1120 PWY-5254 methanofuran biosynthesis Halru_1120 PWY-5474 hydroxycinnamic acid tyramine amides biosynthesis Halru_1120 PWY-6133 (S)-reticuline biosynthesis II Halru_1120 PWY-6802 salidroside biosynthesis Halru_1120 PWY-7297 octopamine biosynthesis Halru_1123 PWY-5484 glycolysis II (from fructose 6-phosphate) Halru_1124 PWY-6174 mevalonate pathway II (archaea) Halru_1124 PWY-7391 isoprene biosynthesis II (engineered) Halru_1124 PWY-7524 mevalonate pathway III (archaea) Halru_1124 PWY-922 mevalonate pathway I Halru_1132 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation Halru_1140 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Halru_1140 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Halru_1140 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Halru_1146 PWY-5083 NAD/NADH phosphorylation and dephosphorylation Halru_1146 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) Halru_1146 PWY-7269 NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast) Halru_1150 PWY-5532 adenosine nucleotides degradation IV Halru_1154 PWY-6654 phosphopantothenate biosynthesis III Halru_1158 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) Halru_1158 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) Halru_1158 PWY-6897 thiamin salvage II Halru_1158 PWY-6907 thiamin diphosphate biosynthesis III (Staphylococcus) Halru_1158 PWY-6908 thiamin diphosphate biosynthesis IV (eukaryotes) Halru_1158 PWY-7353 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) Halru_1158 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast) Halru_1159 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Halru_1170 PWY-7221 guanosine ribonucleotides de novo biosynthesis Halru_1192 PWY-5663 tetrahydrobiopterin biosynthesis I Halru_1192 PWY-5664 tetrahydrobiopterin biosynthesis II Halru_1192 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Halru_1192 PWY-6703 preQ0 biosynthesis Halru_1192 PWY-6797 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea) Halru_1192 PWY-6983 tetrahydrobiopterin biosynthesis III Halru_1192 PWY-7442 drosopterin and aurodrosopterin biosynthesis Halru_1209 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Halru_1209 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Halru_1211 PWY-6482 diphthamide biosynthesis (archaea) Halru_1211 PWY-7546 diphthamide biosynthesis (eukaryotes) Halru_1227 PWY-6167 flavin biosynthesis II (archaea) Halru_1243 PWY-1361 benzoyl-CoA degradation I (aerobic) Halru_1243 PWY-5109 2-methylbutanoate biosynthesis Halru_1243 PWY-5136 fatty acid β-oxidation II (peroxisome) Halru_1243 PWY-5138 unsaturated, even numbered fatty acid β-oxidation Halru_1243 PWY-5177 glutaryl-CoA degradation Halru_1243 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Halru_1243 PWY-6435 4-hydroxybenzoate biosynthesis V Halru_1243 PWY-6583 pyruvate fermentation to butanol I Halru_1243 PWY-6863 pyruvate fermentation to hexanol Halru_1243 PWY-6883 pyruvate fermentation to butanol II Halru_1243 PWY-6944 androstenedione degradation Halru_1243 PWY-6945 cholesterol degradation to androstenedione I (cholesterol oxidase) Halru_1243 PWY-6946 cholesterol degradation to androstenedione II (cholesterol dehydrogenase) Halru_1243 PWY-7007 methyl ketone biosynthesis Halru_1243 PWY-7046 4-coumarate degradation (anaerobic) Halru_1243 PWY-7094 fatty acid salvage Halru_1243 PWY-7216 (R)- and (S)-3-hydroxybutanoate biosynthesis Halru_1243 PWY-735 jasmonic acid biosynthesis Halru_1243 PWY-7401 crotonate fermentation (to acetate and cyclohexane carboxylate) Halru_1258 PWY-5316 nicotine biosynthesis Halru_1258 PWY-7342 superpathway of nicotine biosynthesis Halru_1261 PWY-5316 nicotine biosynthesis Halru_1261 PWY-5381 pyridine nucleotide cycling (plants) Halru_1261 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde Halru_1261 PWY-7342 superpathway of nicotine biosynthesis Halru_1266 PWY-5344 L-homocysteine biosynthesis Halru_1266 PWY-7174 S-methyl-5-thio-α-D-ribose 1-phosphate degradation II Halru_1272 PWY-1042 glycolysis IV (plant cytosol) Halru_1272 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) Halru_1272 PWY-5484 glycolysis II (from fructose 6-phosphate) Halru_1272 PWY-5723 Rubisco shunt Halru_1272 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Halru_1272 PWY-6886 1-butanol autotrophic biosynthesis Halru_1272 PWY-6901 superpathway of glucose and xylose degradation Halru_1272 PWY-7003 glycerol degradation to butanol Halru_1272 PWY-7124 ethylene biosynthesis V (engineered) Halru_1272 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) Halru_1305 PWY-3781 aerobic respiration I (cytochrome c) Halru_1305 PWY-4302 aerobic respiration III (alternative oxidase pathway) Halru_1305 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Halru_1305 PWY-5690 TCA cycle II (plants and fungi) Halru_1305 PWY-6728 methylaspartate cycle Halru_1305 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Halru_1305 PWY-7254 TCA cycle VII (acetate-producers) Halru_1305 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Halru_1316 PWY-3781 aerobic respiration I (cytochrome c) Halru_1316 PWY-4521 arsenite oxidation I (respiratory) Halru_1316 PWY-6692 Fe(II) oxidation Halru_1316 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Halru_1319 PWY-1042 glycolysis IV (plant cytosol) Halru_1319 PWY-5484 glycolysis II (from fructose 6-phosphate) Halru_1319 PWY-6901 superpathway of glucose and xylose degradation Halru_1319 PWY-7003 glycerol degradation to butanol Halru_1321 PWY-1042 glycolysis IV (plant cytosol) Halru_1321 PWY-5484 glycolysis II (from fructose 6-phosphate) Halru_1321 PWY-6886 1-butanol autotrophic biosynthesis Halru_1321 PWY-6901 superpathway of glucose and xylose degradation Halru_1321 PWY-7003 glycerol degradation to butanol Halru_1325 PWY-1281 sulfoacetaldehyde degradation I Halru_1325 PWY-5482 pyruvate fermentation to acetate II Halru_1325 PWY-5485 pyruvate fermentation to acetate IV Halru_1325 PWY-5497 purine nucleobases degradation II (anaerobic) Halru_1325 PWY-6637 sulfolactate degradation II Halru_1326 PWY-5392 reductive TCA cycle II Halru_1326 PWY-5537 pyruvate fermentation to acetate V Halru_1326 PWY-5538 pyruvate fermentation to acetate VI Halru_1326 PWY-5690 TCA cycle II (plants and fungi) Halru_1326 PWY-5913 TCA cycle VI (obligate autotrophs) Halru_1326 PWY-6728 methylaspartate cycle Halru_1326 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Halru_1326 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Halru_1331 PWY-1361 benzoyl-CoA degradation I (aerobic) Halru_1331 PWY-5109 2-methylbutanoate biosynthesis Halru_1331 PWY-5136 fatty acid β-oxidation II (peroxisome) Halru_1331 PWY-5138 unsaturated, even numbered fatty acid β-oxidation Halru_1331 PWY-5177 glutaryl-CoA degradation Halru_1331 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Halru_1331 PWY-6435 4-hydroxybenzoate biosynthesis V Halru_1331 PWY-6583 pyruvate fermentation to butanol I Halru_1331 PWY-6863 pyruvate fermentation to hexanol Halru_1331 PWY-6883 pyruvate fermentation to butanol II Halru_1331 PWY-6944 androstenedione degradation Halru_1331 PWY-6945 cholesterol degradation to androstenedione I (cholesterol oxidase) Halru_1331 PWY-6946 cholesterol degradation to androstenedione II (cholesterol dehydrogenase) Halru_1331 PWY-7007 methyl ketone biosynthesis Halru_1331 PWY-7046 4-coumarate degradation (anaerobic) Halru_1331 PWY-7094 fatty acid salvage Halru_1331 PWY-7216 (R)- and (S)-3-hydroxybutanoate biosynthesis Halru_1331 PWY-735 jasmonic acid biosynthesis Halru_1331 PWY-7401 crotonate fermentation (to acetate and cyclohexane carboxylate) Halru_1334 PWY-5791 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) Halru_1334 PWY-5837 1,4-dihydroxy-2-naphthoate biosynthesis I Halru_1335 PWY-5839 menaquinol-7 biosynthesis Halru_1335 PWY-5851 demethylmenaquinol-9 biosynthesis Halru_1335 PWY-5852 demethylmenaquinol-8 biosynthesis I Halru_1335 PWY-5853 demethylmenaquinol-6 biosynthesis I Halru_1335 PWY-5890 menaquinol-10 biosynthesis Halru_1335 PWY-5891 menaquinol-11 biosynthesis Halru_1335 PWY-5892 menaquinol-12 biosynthesis Halru_1335 PWY-5895 menaquinol-13 biosynthesis Halru_1336 PWY-5791 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) Halru_1336 PWY-5837 1,4-dihydroxy-2-naphthoate biosynthesis I Halru_1338 PWY-5791 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) Halru_1338 PWY-5837 1,4-dihydroxy-2-naphthoate biosynthesis I Halru_1339 PWY-5791 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) Halru_1339 PWY-5837 1,4-dihydroxy-2-naphthoate biosynthesis I Halru_1339 PWY-5901 2,3-dihydroxybenzoate biosynthesis Halru_1339 PWY-6406 salicylate biosynthesis I Halru_1352 PWY-6482 diphthamide biosynthesis (archaea) Halru_1352 PWY-7546 diphthamide biosynthesis (eukaryotes) Halru_1368 PWY-5392 reductive TCA cycle II Halru_1368 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Halru_1368 PWY-5690 TCA cycle II (plants and fungi) Halru_1368 PWY-5913 TCA cycle VI (obligate autotrophs) Halru_1368 PWY-6728 methylaspartate cycle Halru_1368 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Halru_1368 PWY-7254 TCA cycle VII (acetate-producers) Halru_1368 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Halru_1372 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Halru_1372 PWY-6148 tetrahydromethanopterin biosynthesis Halru_1372 PWY-6797 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea) Halru_1372 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) Halru_1376 PWY-5041 S-adenosyl-L-methionine cycle II Halru_1376 PWY-6151 S-adenosyl-L-methionine cycle I Halru_1376 PWY-6936 seleno-amino acid biosynthesis Halru_1376 PWY-702 L-methionine biosynthesis II Halru_1377 PWY-5041 S-adenosyl-L-methionine cycle II Halru_1377 PWY-6151 S-adenosyl-L-methionine cycle I Halru_1377 PWY-6936 seleno-amino acid biosynthesis Halru_1377 PWY-702 L-methionine biosynthesis II Halru_1399 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Halru_1399 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type Halru_1411 PWY-5686 UMP biosynthesis Halru_1416 PWY-5041 S-adenosyl-L-methionine cycle II Halru_1416 PWY-5912 2'-deoxymugineic acid phytosiderophore biosynthesis Halru_1419 PWY-4041 γ-glutamyl cycle Halru_1419 PWY-5826 hypoglycin biosynthesis Halru_1425 PWY-6840 homoglutathione biosynthesis Halru_1425 PWY-7255 ergothioneine biosynthesis I (bacteria) Halru_1435 PWY-5392 reductive TCA cycle II Halru_1435 PWY-5537 pyruvate fermentation to acetate V Halru_1435 PWY-5538 pyruvate fermentation to acetate VI Halru_1435 PWY-5690 TCA cycle II (plants and fungi) Halru_1435 PWY-5913 TCA cycle VI (obligate autotrophs) Halru_1435 PWY-6728 methylaspartate cycle Halru_1435 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Halru_1435 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Halru_1436 PWY-5392 reductive TCA cycle II Halru_1436 PWY-5537 pyruvate fermentation to acetate V Halru_1436 PWY-5538 pyruvate fermentation to acetate VI Halru_1436 PWY-5690 TCA cycle II (plants and fungi) Halru_1436 PWY-5913 TCA cycle VI (obligate autotrophs) Halru_1436 PWY-6728 methylaspartate cycle Halru_1436 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Halru_1436 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Halru_1449 PWY-31 canavanine degradation Halru_1449 PWY-4984 urea cycle Halru_1449 PWY-6305 putrescine biosynthesis IV Halru_1449 PWY-6922 L-Nδ-acetylornithine biosynthesis Halru_1452 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Halru_1452 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Halru_1452 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Halru_1455 PWY-3841 folate transformations II Halru_1455 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Halru_1455 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Halru_1455 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Halru_1455 PWY-7199 pyrimidine deoxyribonucleosides salvage Halru_1455 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Halru_1456 PWY-3841 folate transformations II Halru_1456 PWY-6614 tetrahydrofolate biosynthesis Halru_1468 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation Halru_1468 PWY-6596 adenosine nucleotides degradation I Halru_1468 PWY-7221 guanosine ribonucleotides de novo biosynthesis Halru_1487 PWY-6832 2-aminoethylphosphonate degradation II Halru_1498 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) Halru_1498 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) Halru_1508 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Halru_1508 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Halru_1508 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Halru_1512 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) Halru_1512 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) Halru_1512 PWY-6897 thiamin salvage II Halru_1512 PWY-6907 thiamin diphosphate biosynthesis III (Staphylococcus) Halru_1512 PWY-6908 thiamin diphosphate biosynthesis IV (eukaryotes) Halru_1512 PWY-7353 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) Halru_1512 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast) Halru_1513 PWY-6897 thiamin salvage II Halru_1513 PWY-7353 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) Halru_1513 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast) Halru_1519 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II Halru_1519 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I Halru_1519 PWY-6268 adenosylcobalamin salvage from cobalamin Halru_1519 PWY-6269 adenosylcobalamin salvage from cobinamide II Halru_1540 PWY-4361 S-methyl-5-thio-α-D-ribose 1-phosphate degradation Halru_1540 PWY-7174 S-methyl-5-thio-α-D-ribose 1-phosphate degradation II Halru_1550 PWY-5087 L-glutamate degradation VI (to pyruvate) Halru_1550 PWY-6728 methylaspartate cycle Halru_1551 PWY-5087 L-glutamate degradation VI (to pyruvate) Halru_1551 PWY-5103 L-isoleucine biosynthesis III Halru_1551 PWY-6728 methylaspartate cycle Halru_1552 PWY-5087 L-glutamate degradation VI (to pyruvate) Halru_1552 PWY-5103 L-isoleucine biosynthesis III Halru_1552 PWY-6728 methylaspartate cycle Halru_1555 PWY-6167 flavin biosynthesis II (archaea) Halru_1557 PWY-1042 glycolysis IV (plant cytosol) Halru_1557 PWY-5484 glycolysis II (from fructose 6-phosphate) Halru_1557 PWY-6886 1-butanol autotrophic biosynthesis Halru_1557 PWY-6901 superpathway of glucose and xylose degradation Halru_1557 PWY-7003 glycerol degradation to butanol Halru_1568 PWY-5651 L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde Halru_1568 PWY-6309 L-tryptophan degradation XI (mammalian, via kynurenine) Halru_1572 PWY-6167 flavin biosynthesis II (archaea) Halru_1572 PWY-6168 flavin biosynthesis III (fungi) Halru_1577 PWY-5669 phosphatidylethanolamine biosynthesis I Halru_1581 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Halru_1582 PWY-3461 L-tyrosine biosynthesis II Halru_1582 PWY-3462 L-phenylalanine biosynthesis II Halru_1582 PWY-6120 L-tyrosine biosynthesis III Halru_1582 PWY-6627 salinosporamide A biosynthesis Halru_1598 PWY-5686 UMP biosynthesis Halru_1599 PWY-5686 UMP biosynthesis Halru_1599 PWY-5697 allantoin degradation to ureidoglycolate I (urea producing) Halru_1599 PWY-5698 allantoin degradation to ureidoglycolate II (ammonia producing) Halru_1631 PWY-6749 CMP-legionaminate biosynthesis I Halru_1652 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II Halru_1652 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I Halru_1652 PWY-6268 adenosylcobalamin salvage from cobalamin Halru_1652 PWY-6269 adenosylcobalamin salvage from cobinamide II Halru_1658 PWY-5083 NAD/NADH phosphorylation and dephosphorylation Halru_1658 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) Halru_1658 PWY-7269 NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast) Halru_1684 PWY-6174 mevalonate pathway II (archaea) Halru_1684 PWY-7391 isoprene biosynthesis II (engineered) Halru_1684 PWY-7524 mevalonate pathway III (archaea) Halru_1684 PWY-922 mevalonate pathway I Halru_1698 PWY-7219 adenosine ribonucleotides de novo biosynthesis Halru_1701 PWY-1042 glycolysis IV (plant cytosol) Halru_1701 PWY-5484 glycolysis II (from fructose 6-phosphate) Halru_1701 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Halru_1701 PWY-7003 glycerol degradation to butanol Halru_1708 PWY-1361 benzoyl-CoA degradation I (aerobic) Halru_1708 PWY-5109 2-methylbutanoate biosynthesis Halru_1708 PWY-5136 fatty acid β-oxidation II (peroxisome) Halru_1708 PWY-5138 unsaturated, even numbered fatty acid β-oxidation Halru_1708 PWY-5177 glutaryl-CoA degradation Halru_1708 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Halru_1708 PWY-6435 4-hydroxybenzoate biosynthesis V Halru_1708 PWY-6583 pyruvate fermentation to butanol I Halru_1708 PWY-6863 pyruvate fermentation to hexanol Halru_1708 PWY-6883 pyruvate fermentation to butanol II Halru_1708 PWY-6944 androstenedione degradation Halru_1708 PWY-6945 cholesterol degradation to androstenedione I (cholesterol oxidase) Halru_1708 PWY-6946 cholesterol degradation to androstenedione II (cholesterol dehydrogenase) Halru_1708 PWY-7007 methyl ketone biosynthesis Halru_1708 PWY-7046 4-coumarate degradation (anaerobic) Halru_1708 PWY-7094 fatty acid salvage Halru_1708 PWY-7216 (R)- and (S)-3-hydroxybutanoate biosynthesis Halru_1708 PWY-735 jasmonic acid biosynthesis Halru_1708 PWY-7401 crotonate fermentation (to acetate and cyclohexane carboxylate) Halru_1709 PWY-2941 L-lysine biosynthesis II Halru_1709 PWY-2942 L-lysine biosynthesis III Halru_1709 PWY-5097 L-lysine biosynthesis VI Halru_1709 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Halru_1709 PWY-6559 spermidine biosynthesis II Halru_1709 PWY-6562 norspermidine biosynthesis Halru_1709 PWY-7153 grixazone biosynthesis Halru_1709 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Halru_1713 PWY-5796 malonate decarboxylase activation Halru_1715 PWY-5198 factor 420 biosynthesis Halru_1727 PWY-6854 ethylene biosynthesis III (microbes) Halru_1728 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Halru_1728 PWY-7176 UTP and CTP de novo biosynthesis Halru_1728 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Halru_1728 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Halru_1728 PWY-7197 pyrimidine deoxyribonucleotide phosphorylation Halru_1728 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Halru_1728 PWY-7205 CMP phosphorylation Halru_1728 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Halru_1728 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II Halru_1728 PWY-7221 guanosine ribonucleotides de novo biosynthesis Halru_1728 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II Halru_1728 PWY-7224 purine deoxyribonucleosides salvage Halru_1728 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I Halru_1728 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis Halru_1735 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Halru_1739 PWY-6174 mevalonate pathway II (archaea) Halru_1739 PWY-7524 mevalonate pathway III (archaea) Halru_1740 PWY-3821 galactose degradation III Halru_1740 PWY-6174 mevalonate pathway II (archaea) Halru_1740 PWY-6317 galactose degradation I (Leloir pathway) Halru_1740 PWY-6527 stachyose degradation Halru_1740 PWY-7391 isoprene biosynthesis II (engineered) Halru_1740 PWY-922 mevalonate pathway I Halru_1743 PWY-1042 glycolysis IV (plant cytosol) Halru_1743 PWY-1622 formaldehyde assimilation I (serine pathway) Halru_1743 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) Halru_1743 PWY-5484 glycolysis II (from fructose 6-phosphate) Halru_1743 PWY-5723 Rubisco shunt Halru_1743 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Halru_1743 PWY-6886 1-butanol autotrophic biosynthesis Halru_1743 PWY-6901 superpathway of glucose and xylose degradation Halru_1743 PWY-7003 glycerol degradation to butanol Halru_1743 PWY-7124 ethylene biosynthesis V (engineered) Halru_1743 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) Halru_1758 PWY-6823 molybdenum cofactor biosynthesis Halru_1770 PWY-6654 phosphopantothenate biosynthesis III Halru_1783 PWY-1622 formaldehyde assimilation I (serine pathway) Halru_1783 PWY-181 photorespiration Halru_1783 PWY-2161 folate polyglutamylation Halru_1783 PWY-2201 folate transformations I Halru_1783 PWY-3661 glycine betaine degradation I Halru_1783 PWY-3661-1 glycine betaine degradation II (mammalian) Halru_1783 PWY-3841 folate transformations II Halru_1783 PWY-5497 purine nucleobases degradation II (anaerobic) Halru_1785 PWY-1722 formate reduction to 5,10-methylenetetrahydrofolate Halru_1785 PWY-2201 folate transformations I Halru_1785 PWY-3841 folate transformations II Halru_1785 PWY-5030 L-histidine degradation III Halru_1785 PWY-5497 purine nucleobases degradation II (anaerobic) Halru_1785 PWY-6613 tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate Halru_1802 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Halru_1802 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Halru_1810 PWY-5743 3-hydroxypropanoate cycle Halru_1810 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Halru_1810 PWY-6728 methylaspartate cycle Halru_1810 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Halru_1811 PWY-5743 3-hydroxypropanoate cycle Halru_1811 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Halru_1811 PWY-6728 methylaspartate cycle Halru_1811 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Halru_1853 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) Halru_1853 PWY-6507 4-deoxy-L-threo-hex-4-enopyranuronate degradation Halru_1853 PWY-7242 D-fructuronate degradation Halru_1853 PWY-7310 D-glucosaminate degradation Halru_1860 PWY-4381 fatty acid biosynthesis initiation I Halru_1860 PWY-5743 3-hydroxypropanoate cycle Halru_1860 PWY-5744 glyoxylate assimilation Halru_1860 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Halru_1860 PWY-6679 jadomycin biosynthesis Halru_1860 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Halru_1899 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Halru_1899 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Halru_1899 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Halru_1899 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) Halru_1926 PWY-4061 glutathione-mediated detoxification I Halru_1926 PWY-6842 glutathione-mediated detoxification II Halru_1926 PWY-7112 4-hydroxy-2-nonenal detoxification Halru_1926 PWY-7533 gliotoxin biosynthesis Halru_1932 PWY-7219 adenosine ribonucleotides de novo biosynthesis Halru_1935 PWY-3781 aerobic respiration I (cytochrome c) Halru_1935 PWY-4521 arsenite oxidation I (respiratory) Halru_1935 PWY-6692 Fe(II) oxidation Halru_1935 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Halru_1978 PWY-6482 diphthamide biosynthesis (archaea) Halru_1983 PWY-6829 tRNA methylation (yeast) Halru_1983 PWY-7285 methylwyosine biosynthesis Halru_1983 PWY-7286 7-(3-amino-3-carboxypropyl)-wyosine biosynthesis Halru_2014 PWY-6148 tetrahydromethanopterin biosynthesis Halru_2058 PWY-4381 fatty acid biosynthesis initiation I Halru_2069 PWY-7205 CMP phosphorylation Halru_2071 PWY-1723 formaldehyde oxidation V (H4MPT pathway) Halru_2078 PWY-5686 UMP biosynthesis Halru_2084 PWY-5506 methanol oxidation to formaldehyde IV Halru_2113 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Halru_2113 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Halru_2113 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Halru_2113 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Halru_2113 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II Halru_2113 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II Halru_2113 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I Halru_2113 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis Halru_2116 PWY-5958 acridone alkaloid biosynthesis Halru_2116 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis Halru_2116 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis Halru_2117 PWY-5958 acridone alkaloid biosynthesis Halru_2117 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis Halru_2117 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis Halru_2135 PWY-5943 β-carotene biosynthesis Halru_2135 PWY-5947 lutein biosynthesis Halru_2155 PWY-6938 NADH repair Halru_2160 PWY-6749 CMP-legionaminate biosynthesis I Halru_2163 PWY-6556 pyrimidine ribonucleosides salvage II Halru_2163 PWY-7181 pyrimidine deoxyribonucleosides degradation Halru_2163 PWY-7193 pyrimidine ribonucleosides salvage I Halru_2163 PWY-7199 pyrimidine deoxyribonucleosides salvage Halru_2165 PWY-4202 arsenate detoxification I (glutaredoxin) Halru_2165 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation Halru_2165 PWY-6608 guanosine nucleotides degradation III Halru_2165 PWY-6609 adenine and adenosine salvage III Halru_2165 PWY-6611 adenine and adenosine salvage V Halru_2165 PWY-6620 guanine and guanosine salvage Halru_2165 PWY-6627 salinosporamide A biosynthesis Halru_2165 PWY-6644 fluoroacetate and fluorothreonine biosynthesis Halru_2165 PWY-7179 purine deoxyribonucleosides degradation I Halru_2165 PWY-7179-1 purine deoxyribonucleosides degradation Halru_2178 PWY-1281 sulfoacetaldehyde degradation I Halru_2178 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type Halru_2178 PWY-5482 pyruvate fermentation to acetate II Halru_2178 PWY-5485 pyruvate fermentation to acetate IV Halru_2178 PWY-5497 purine nucleobases degradation II (anaerobic) Halru_2178 PWY-6637 sulfolactate degradation II Halru_2178 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type Halru_2182 PWY-702 L-methionine biosynthesis II Halru_2183 PWY-6466 pyridoxal 5'-phosphate biosynthesis II Halru_2197 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Halru_2198 PWY-7158 L-phenylalanine degradation V Halru_2202 PWY-6823 molybdenum cofactor biosynthesis Halru_2214 PWY-5663 tetrahydrobiopterin biosynthesis I Halru_2214 PWY-5664 tetrahydrobiopterin biosynthesis II Halru_2214 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Halru_2214 PWY-6703 preQ0 biosynthesis Halru_2214 PWY-6983 tetrahydrobiopterin biosynthesis III Halru_2214 PWY-7442 drosopterin and aurodrosopterin biosynthesis Halru_2233 PWY-7204 pyridoxal 5'-phosphate salvage II (plants) Halru_2233 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) Halru_2235 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Halru_2235 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Halru_2248 PWY-5686 UMP biosynthesis Halru_2250 PWY-5737 (5R)-carbapenem carboxylate biosynthesis Halru_2250 PWY-6922 L-Nδ-acetylornithine biosynthesis Halru_2252 PWY-5057 L-valine degradation II Halru_2252 PWY-5076 L-leucine degradation III Halru_2252 PWY-5078 L-isoleucine degradation II Halru_2252 PWY-5101 L-isoleucine biosynthesis II Halru_2252 PWY-5103 L-isoleucine biosynthesis III Halru_2252 PWY-5104 L-isoleucine biosynthesis IV Halru_2252 PWY-5108 L-isoleucine biosynthesis V Halru_2254 PWY-6167 flavin biosynthesis II (archaea) Halru_2254 PWY-6168 flavin biosynthesis III (fungi) Halru_2255 PWY-6167 flavin biosynthesis II (archaea) Halru_2257 PWY-6123 inosine-5'-phosphate biosynthesis I Halru_2257 PWY-6124 inosine-5'-phosphate biosynthesis II Halru_2257 PWY-7234 inosine-5'-phosphate biosynthesis III Halru_2259 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Halru_2259 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Halru_2259 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Halru_2260 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Halru_2260 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Halru_2260 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Halru_2303 PWY-6160 3-dehydroquinate biosynthesis II (archaea) Halru_2308 PWY-6160 3-dehydroquinate biosynthesis II (archaea) Halru_2310 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Halru_2310 PWY-6416 quinate degradation II Halru_2310 PWY-6707 gallate biosynthesis Halru_2319 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Halru_2319 PWY-5686 UMP biosynthesis Halru_2319 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Halru_2323 PWY-2161 folate polyglutamylation Halru_2323 PWY-6614 tetrahydrofolate biosynthesis Halru_2332 PWY-6349 CDP-archaeol biosynthesis Halru_2354 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II Halru_2354 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I Halru_2354 PWY-6269 adenosylcobalamin salvage from cobinamide II Halru_2356 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II Halru_2356 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I Halru_2356 PWY-6269 adenosylcobalamin salvage from cobinamide II Halru_2376 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) Halru_2376 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) Halru_2403 PWY-6502 oxidized GTP and dGTP detoxification Halru_2430 PWY-1341 phenylacetate degradation II (anaerobic) Halru_2430 PWY-6318 L-phenylalanine degradation IV (mammalian, via side chain) Halru_2454 PWY-7206 pyrimidine deoxyribonucleotides dephosphorylation Halru_2458 PWY-2941 L-lysine biosynthesis II Halru_2458 PWY-2942 L-lysine biosynthesis III Halru_2458 PWY-5097 L-lysine biosynthesis VI Halru_2467 PWY-5958 acridone alkaloid biosynthesis Halru_2467 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis Halru_2467 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis Halru_2468 PWY-5958 acridone alkaloid biosynthesis Halru_2468 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis Halru_2468 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis Halru_2470 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Halru_2494 PWY-6711 archaeosine biosynthesis Halru_2504 PWY-7204 pyridoxal 5'-phosphate salvage II (plants) Halru_2504 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) Halru_2528 PWY-5651 L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde Halru_2528 PWY-6309 L-tryptophan degradation XI (mammalian, via kynurenine) Halru_2576 PWY-7219 adenosine ribonucleotides de novo biosynthesis Halru_2577 PWY-7219 adenosine ribonucleotides de novo biosynthesis Halru_2601 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Halru_2601 PWY-6148 tetrahydromethanopterin biosynthesis Halru_2601 PWY-6797 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea) Halru_2601 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) Halru_2603 PWY-6167 flavin biosynthesis II (archaea) Halru_2608 PWY-6871 3-methylbutanol biosynthesis Halru_2609 PWY-5101 L-isoleucine biosynthesis II Halru_2609 PWY-5103 L-isoleucine biosynthesis III Halru_2609 PWY-5104 L-isoleucine biosynthesis IV Halru_2609 PWY-5938 (R)-acetoin biosynthesis I Halru_2609 PWY-5939 (R)-acetoin biosynthesis II Halru_2609 PWY-6389 (S)-acetoin biosynthesis Halru_2609 PWY-7111 pyruvate fermentation to isobutanol (engineered) Halru_2610 PWY-5101 L-isoleucine biosynthesis II Halru_2610 PWY-5103 L-isoleucine biosynthesis III Halru_2610 PWY-5104 L-isoleucine biosynthesis IV Halru_2610 PWY-5938 (R)-acetoin biosynthesis I Halru_2610 PWY-5939 (R)-acetoin biosynthesis II Halru_2610 PWY-6389 (S)-acetoin biosynthesis Halru_2610 PWY-7111 pyruvate fermentation to isobutanol (engineered) Halru_2611 PWY-5101 L-isoleucine biosynthesis II Halru_2611 PWY-5103 L-isoleucine biosynthesis III Halru_2611 PWY-5104 L-isoleucine biosynthesis IV Halru_2611 PWY-7111 pyruvate fermentation to isobutanol (engineered) Halru_2616 PWY-5101 L-isoleucine biosynthesis II Halru_2616 PWY-5103 L-isoleucine biosynthesis III Halru_2616 PWY-5104 L-isoleucine biosynthesis IV Halru_2616 PWY-7111 pyruvate fermentation to isobutanol (engineered) Halru_2630 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Halru_2630 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Halru_2630 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Halru_2630 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Halru_2630 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II Halru_2630 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II Halru_2630 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I Halru_2630 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis Halru_2648 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type Halru_2648 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Halru_2648 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Halru_2648 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type Halru_2649 PWY-6281 L-selenocysteine biosynthesis II (archaea and eukaryotes) Halru_2673 PWY-7165 L-ascorbate biosynthesis VI (engineered pathway) Halru_2682 PWY-381 nitrate reduction II (assimilatory) Halru_2682 PWY-5675 nitrate reduction V (assimilatory) Halru_2682 PWY-6549 L-glutamine biosynthesis III Halru_2682 PWY-6963 ammonia assimilation cycle I Halru_2682 PWY-6964 ammonia assimilation cycle II Halru_2684 PWY-6829 tRNA methylation (yeast) Halru_2696 PWY-5451 acetone degradation I (to methylglyoxal) Halru_2696 PWY-6588 pyruvate fermentation to acetone Halru_2696 PWY-6876 isopropanol biosynthesis Halru_2696 PWY-7466 acetone degradation III (to propane-1,2-diol) Halru_2700 PWY-7432 L-phenylalanine biosynthesis III (cytosolic, plants) Halru_2720 PWY-5199 factor 420 polyglutamylation Halru_2723 PWY-4361 S-methyl-5-thio-α-D-ribose 1-phosphate degradation Halru_2723 PWY-7174 S-methyl-5-thio-α-D-ribose 1-phosphate degradation II Halru_2733 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Halru_2733 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Halru_2733 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Halru_2733 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Halru_2733 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II Halru_2733 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II Halru_2733 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I Halru_2733 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis Halru_2734 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Halru_2734 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Halru_2734 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Halru_2734 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Halru_2734 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II Halru_2734 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II Halru_2734 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I Halru_2734 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis Halru_2750 PWY-6466 pyridoxal 5'-phosphate biosynthesis II Halru_2753 PWY-6823 molybdenum cofactor biosynthesis Halru_2753 PWY-6891 thiazole biosynthesis II (Bacillus) Halru_2753 PWY-6892 thiazole biosynthesis I (E. coli) Halru_2753 PWY-7250 [2Fe-2S] iron-sulfur cluster biosynthesis Halru_2763 PWY-6829 tRNA methylation (yeast) Halru_2763 PWY-7285 methylwyosine biosynthesis Halru_2763 PWY-7286 7-(3-amino-3-carboxypropyl)-wyosine biosynthesis Halru_2779 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Halru_2845 PWY-5651 L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde Halru_2845 PWY-6309 L-tryptophan degradation XI (mammalian, via kynurenine) Halru_2870 PWY-6749 CMP-legionaminate biosynthesis I Halru_2892 PWY-3781 aerobic respiration I (cytochrome c) Halru_2892 PWY-4521 arsenite oxidation I (respiratory) Halru_2892 PWY-6692 Fe(II) oxidation Halru_2892 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Halru_2896 PWY-6523 nitrite-dependent anaerobic methane oxidation Halru_2896 PWY-6748 nitrate reduction VII (denitrification) Halru_2896 PWY-7084 nitrifier denitrification Halru_2941 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Halru_2941 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Halru_2943 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Halru_2943 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Halru_2962 PWY-5484 glycolysis II (from fructose 6-phosphate) Halru_2970 PWY-7180 2'-deoxy-α-D-ribose 1-phosphate degradation Halru_2993 PWY-3781 aerobic respiration I (cytochrome c) Halru_2993 PWY-4521 arsenite oxidation I (respiratory) Halru_2993 PWY-6692 Fe(II) oxidation Halru_2993 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Halru_2998 PWY-3781 aerobic respiration I (cytochrome c) Halru_2998 PWY-4521 arsenite oxidation I (respiratory) Halru_2998 PWY-6692 Fe(II) oxidation Halru_2998 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Halru_3079 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Halru_3079 PWY-5189 tetrapyrrole biosynthesis II (from glycine) Halru_3081 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Halru_3085 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Halru_3085 PWY-5189 tetrapyrrole biosynthesis II (from glycine) Halru_3086 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Halru_3086 PWY-5189 tetrapyrrole biosynthesis II (from glycine) Halru_3092 PWY-6654 phosphopantothenate biosynthesis III Halru_3125 PWY-7183 pyrimidine nucleobases salvage I Halru_3136 PWY-7219 adenosine ribonucleotides de novo biosynthesis Halru_3163 PWY-6749 CMP-legionaminate biosynthesis I Halru_3184 PWY-6123 inosine-5'-phosphate biosynthesis I Halru_3184 PWY-6124 inosine-5'-phosphate biosynthesis II Halru_3184 PWY-7234 inosine-5'-phosphate biosynthesis III Halru_3188 PWY-2941 L-lysine biosynthesis II Halru_3188 PWY-2942 L-lysine biosynthesis III Halru_3188 PWY-5097 L-lysine biosynthesis VI Halru_3188 PWY-6559 spermidine biosynthesis II Halru_3188 PWY-6562 norspermidine biosynthesis Halru_3188 PWY-7153 grixazone biosynthesis