Hyd3684_0004 PWY-622 starch biosynthesis Hyd3684_0005 PWY-6614 tetrahydrofolate biosynthesis Hyd3684_0019 PWY-5316 nicotine biosynthesis Hyd3684_0019 PWY-7342 superpathway of nicotine biosynthesis Hyd3684_0022 PWY-5663 tetrahydrobiopterin biosynthesis I Hyd3684_0022 PWY-5664 tetrahydrobiopterin biosynthesis II Hyd3684_0022 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Hyd3684_0022 PWY-6703 preQ0 biosynthesis Hyd3684_0022 PWY-6983 tetrahydrobiopterin biosynthesis III Hyd3684_0022 PWY-7442 drosopterin and aurodrosopterin biosynthesis Hyd3684_0023 PWY-6654 phosphopantothenate biosynthesis III Hyd3684_0029 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II Hyd3684_0031 PWY-6703 preQ0 biosynthesis Hyd3684_0065 PWY-5101 L-isoleucine biosynthesis II Hyd3684_0065 PWY-5103 L-isoleucine biosynthesis III Hyd3684_0065 PWY-5104 L-isoleucine biosynthesis IV Hyd3684_0065 PWY-7111 pyruvate fermentation to isobutanol (engineered) Hyd3684_0069 PWY-2941 L-lysine biosynthesis II Hyd3684_0069 PWY-2942 L-lysine biosynthesis III Hyd3684_0069 PWY-5097 L-lysine biosynthesis VI Hyd3684_0074 PWY-6854 ethylene biosynthesis III (microbes) Hyd3684_0079 PWY-6834 spermidine biosynthesis III Hyd3684_0089 PWY-6672 cis-genanyl-CoA degradation Hyd3684_0089 PWY-7118 chitin degradation to ethanol Hyd3684_0090 PWY-6123 inosine-5'-phosphate biosynthesis I Hyd3684_0090 PWY-6124 inosine-5'-phosphate biosynthesis II Hyd3684_0090 PWY-7234 inosine-5'-phosphate biosynthesis III Hyd3684_0091 PWY-723 alkylnitronates degradation Hyd3684_0095 PWY-7560 methylerythritol phosphate pathway II Hyd3684_0121 PWY-2781 cis-zeatin biosynthesis Hyd3684_0124 PWY-6829 tRNA methylation (yeast) Hyd3684_0124 PWY-7285 methylwyosine biosynthesis Hyd3684_0124 PWY-7286 7-(3-amino-3-carboxypropyl)-wyosine biosynthesis Hyd3684_0126 PWY-3461 L-tyrosine biosynthesis II Hyd3684_0126 PWY-3462 L-phenylalanine biosynthesis II Hyd3684_0126 PWY-6120 L-tyrosine biosynthesis III Hyd3684_0126 PWY-6627 salinosporamide A biosynthesis Hyd3684_0126 PWY-7432 L-phenylalanine biosynthesis III (cytosolic, plants) Hyd3684_0133 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Hyd3684_0133 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Hyd3684_0133 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Hyd3684_0133 PWY-7197 pyrimidine deoxyribonucleotide phosphorylation Hyd3684_0133 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Hyd3684_0133 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Hyd3684_0136 PWY-381 nitrate reduction II (assimilatory) Hyd3684_0136 PWY-5675 nitrate reduction V (assimilatory) Hyd3684_0136 PWY-6549 L-glutamine biosynthesis III Hyd3684_0136 PWY-6963 ammonia assimilation cycle I Hyd3684_0136 PWY-6964 ammonia assimilation cycle II Hyd3684_0142 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Hyd3684_0142 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Hyd3684_0143 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Hyd3684_0143 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Hyd3684_0148 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Hyd3684_0148 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Hyd3684_0148 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Hyd3684_0148 PWY-7206 pyrimidine deoxyribonucleotides dephosphorylation Hyd3684_0162 PWY-4983 L-citrulline-nitric oxide cycle Hyd3684_0162 PWY-4984 urea cycle Hyd3684_0162 PWY-5 canavanine biosynthesis Hyd3684_0162 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Hyd3684_0162 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Hyd3684_0165 PWY-5041 S-adenosyl-L-methionine cycle II Hyd3684_0165 PWY-5912 2'-deoxymugineic acid phytosiderophore biosynthesis Hyd3684_0166 PWY-3801 sucrose degradation II (sucrose synthase) Hyd3684_0166 PWY-3861 mannitol degradation II Hyd3684_0166 PWY-3881 mannitol biosynthesis Hyd3684_0166 PWY-5054 sorbitol biosynthesis I Hyd3684_0166 PWY-5384 sucrose degradation IV (sucrose phosphorylase) Hyd3684_0166 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II Hyd3684_0166 PWY-5659 GDP-mannose biosynthesis Hyd3684_0166 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Hyd3684_0166 PWY-621 sucrose degradation III (sucrose invertase) Hyd3684_0166 PWY-622 starch biosynthesis Hyd3684_0166 PWY-6531 mannitol cycle Hyd3684_0166 PWY-6981 chitin biosynthesis Hyd3684_0166 PWY-7238 sucrose biosynthesis II Hyd3684_0166 PWY-7347 sucrose biosynthesis III Hyd3684_0166 PWY-7385 1,3-propanediol biosynthesis (engineered) Hyd3684_0166 PWY-7456 mannan degradation Hyd3684_0166 PWY-882 L-ascorbate biosynthesis I (L-galactose pathway) Hyd3684_0171 PWY-5269 cardiolipin biosynthesis II Hyd3684_0171 PWY-5668 cardiolipin biosynthesis I Hyd3684_0181 PWY-7077 N-acetyl-D-galactosamine degradation Hyd3684_0181 PWY-7395 D-galactosamine and N-acetyl-D-galactosamine degradation Hyd3684_0194 PWY-3961 phosphopantothenate biosynthesis II Hyd3684_0195 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation Hyd3684_0195 PWY-6596 adenosine nucleotides degradation I Hyd3684_0195 PWY-7221 guanosine ribonucleotides de novo biosynthesis Hyd3684_0199 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) Hyd3684_0199 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) Hyd3684_0213 PWY-5265 peptidoglycan biosynthesis II (staphylococci) Hyd3684_0213 PWY-6385 peptidoglycan biosynthesis III (mycobacteria) Hyd3684_0213 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) Hyd3684_0213 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) Hyd3684_0217 PWY-5101 L-isoleucine biosynthesis II Hyd3684_0217 PWY-5103 L-isoleucine biosynthesis III Hyd3684_0217 PWY-5104 L-isoleucine biosynthesis IV Hyd3684_0217 PWY-7111 pyruvate fermentation to isobutanol (engineered) Hyd3684_0218 PWY-6700 queuosine biosynthesis Hyd3684_0220 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Hyd3684_0220 PWY-6416 quinate degradation II Hyd3684_0220 PWY-6707 gallate biosynthesis Hyd3684_0221 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Hyd3684_0230 PWY-6936 seleno-amino acid biosynthesis Hyd3684_0234 PWY-4381 fatty acid biosynthesis initiation I Hyd3684_0247 PWY-6599 guanine and guanosine salvage II Hyd3684_0247 PWY-6609 adenine and adenosine salvage III Hyd3684_0247 PWY-6610 adenine and adenosine salvage IV Hyd3684_0247 PWY-6620 guanine and guanosine salvage Hyd3684_0284 PWY-7219 adenosine ribonucleotides de novo biosynthesis Hyd3684_0303 PWY-3781 aerobic respiration I (cytochrome c) Hyd3684_0303 PWY-4302 aerobic respiration III (alternative oxidase pathway) Hyd3684_0303 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Hyd3684_0303 PWY-5690 TCA cycle II (plants and fungi) Hyd3684_0303 PWY-6728 methylaspartate cycle Hyd3684_0303 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Hyd3684_0303 PWY-7254 TCA cycle VII (acetate-producers) Hyd3684_0303 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Hyd3684_0312 PWY-7429 arsenite oxidation II (respiratory) Hyd3684_0313 PWY-7429 arsenite oxidation II (respiratory) Hyd3684_0315 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I Hyd3684_0315 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) Hyd3684_0320 PWY-5686 UMP biosynthesis Hyd3684_0326 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Hyd3684_0326 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Hyd3684_0335 PWY-6829 tRNA methylation (yeast) Hyd3684_0339 PWY-2941 L-lysine biosynthesis II Hyd3684_0339 PWY-2942 L-lysine biosynthesis III Hyd3684_0339 PWY-5097 L-lysine biosynthesis VI Hyd3684_0349 PWY-3821 galactose degradation III Hyd3684_0349 PWY-6317 galactose degradation I (Leloir pathway) Hyd3684_0349 PWY-6397 mycolyl-arabinogalactan-peptidoglycan complex biosynthesis Hyd3684_0349 PWY-6527 stachyose degradation Hyd3684_0349 PWY-7328 superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis Hyd3684_0349 PWY-7344 UDP-D-galactose biosynthesis Hyd3684_0353 PWY-6281 L-selenocysteine biosynthesis II (archaea and eukaryotes) Hyd3684_0386 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Hyd3684_0386 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Hyd3684_0386 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Hyd3684_0389 PWY-2941 L-lysine biosynthesis II Hyd3684_0389 PWY-2942 L-lysine biosynthesis III Hyd3684_0389 PWY-5097 L-lysine biosynthesis VI Hyd3684_0389 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Hyd3684_0389 PWY-6559 spermidine biosynthesis II Hyd3684_0389 PWY-6562 norspermidine biosynthesis Hyd3684_0389 PWY-7153 grixazone biosynthesis Hyd3684_0389 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Hyd3684_0408 PWY-5381 pyridine nucleotide cycling (plants) Hyd3684_0408 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde Hyd3684_0413 PWY-5686 UMP biosynthesis Hyd3684_0433 PWY-5686 UMP biosynthesis Hyd3684_0459 PWY-1042 glycolysis IV (plant cytosol) Hyd3684_0459 PWY-5484 glycolysis II (from fructose 6-phosphate) Hyd3684_0459 PWY-6901 superpathway of glucose and xylose degradation Hyd3684_0459 PWY-7003 glycerol degradation to butanol Hyd3684_0464 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) Hyd3684_0464 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) Hyd3684_0464 PWY-6896 thiamin salvage I Hyd3684_0464 PWY-6897 thiamin salvage II Hyd3684_0472 PWY-4983 L-citrulline-nitric oxide cycle Hyd3684_0472 PWY-4984 urea cycle Hyd3684_0472 PWY-5 canavanine biosynthesis Hyd3684_0472 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Hyd3684_0472 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Hyd3684_0474 PWY-5097 L-lysine biosynthesis VI Hyd3684_0476 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Hyd3684_0476 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Hyd3684_0478 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Hyd3684_0481 PWY-5392 reductive TCA cycle II Hyd3684_0481 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Hyd3684_0481 PWY-5690 TCA cycle II (plants and fungi) Hyd3684_0481 PWY-5913 TCA cycle VI (obligate autotrophs) Hyd3684_0481 PWY-6728 methylaspartate cycle Hyd3684_0481 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Hyd3684_0481 PWY-7254 TCA cycle VII (acetate-producers) Hyd3684_0481 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Hyd3684_0486 PWY-1622 formaldehyde assimilation I (serine pathway) Hyd3684_0486 PWY-181 photorespiration Hyd3684_0486 PWY-2161 folate polyglutamylation Hyd3684_0486 PWY-2201 folate transformations I Hyd3684_0486 PWY-3661 glycine betaine degradation I Hyd3684_0486 PWY-3661-1 glycine betaine degradation II (mammalian) Hyd3684_0486 PWY-3841 folate transformations II Hyd3684_0486 PWY-5497 purine nucleobases degradation II (anaerobic) Hyd3684_0487 PWY-7346 UDP-α-D-glucuronate biosynthesis (from UDP-glucose) Hyd3684_0490 PWY-6703 preQ0 biosynthesis Hyd3684_0493 PWY-6700 queuosine biosynthesis Hyd3684_0495 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Hyd3684_0496 PWY-5367 petroselinate biosynthesis Hyd3684_0496 PWY-5971 palmitate biosynthesis II (bacteria and plants) Hyd3684_0496 PWY-5973 cis-vaccenate biosynthesis Hyd3684_0496 PWY-5989 stearate biosynthesis II (bacteria and plants) Hyd3684_0496 PWY-5994 palmitate biosynthesis I (animals and fungi) Hyd3684_0496 PWY-6113 superpathway of mycolate biosynthesis Hyd3684_0496 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) Hyd3684_0496 PWY-6519 8-amino-7-oxononanoate biosynthesis I Hyd3684_0496 PWY-6951 Hyd3684_0496|Hyd3684_0496|YP_004477029.1|GeneID:10649938 Hyd3684_0496 PWY-7053 docosahexaenoate biosynthesis I (lower eukaryotes) Hyd3684_0496 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Hyd3684_0496 PWYG-321 mycolate biosynthesis Hyd3684_0504 PWY-7380 biotin biosynthesis from 8-amino-7-oxononanoate II Hyd3684_0508 PWY-6012 acyl carrier protein metabolism I Hyd3684_0508 PWY-6012-1 acyl carrier protein metabolism II (mammalian) Hyd3684_0509 PWY-2941 L-lysine biosynthesis II Hyd3684_0509 PWY-2942 L-lysine biosynthesis III Hyd3684_0509 PWY-5097 L-lysine biosynthesis VI Hyd3684_0511 PWY-5041 S-adenosyl-L-methionine cycle II Hyd3684_0512 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Hyd3684_0512 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Hyd3684_0532 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Hyd3684_0532 PWY-5189 tetrapyrrole biosynthesis II (from glycine) Hyd3684_0535 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Hyd3684_0535 PWY-6148 tetrahydromethanopterin biosynthesis Hyd3684_0535 PWY-6797 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea) Hyd3684_0535 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) Hyd3684_0537 PWY-6167 flavin biosynthesis II (archaea) Hyd3684_0537 PWY-6168 flavin biosynthesis III (fungi) Hyd3684_0541 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Hyd3684_0541 PWY-5686 UMP biosynthesis Hyd3684_0541 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Hyd3684_0542 PWY-5958 acridone alkaloid biosynthesis Hyd3684_0542 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis Hyd3684_0542 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis Hyd3684_0545 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Hyd3684_0545 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Hyd3684_0545 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Hyd3684_0546 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Hyd3684_0546 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Hyd3684_0546 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Hyd3684_0548 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Hyd3684_0552 PWY-5988 wound-induced proteolysis I Hyd3684_0552 PWY-6018 seed germination protein turnover Hyd3684_0567 PWY-1042 glycolysis IV (plant cytosol) Hyd3684_0567 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) Hyd3684_0567 PWY-5484 glycolysis II (from fructose 6-phosphate) Hyd3684_0567 PWY-5723 Rubisco shunt Hyd3684_0567 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Hyd3684_0567 PWY-6886 1-butanol autotrophic biosynthesis Hyd3684_0567 PWY-6901 superpathway of glucose and xylose degradation Hyd3684_0567 PWY-7003 glycerol degradation to butanol Hyd3684_0567 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) Hyd3684_0567 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) Hyd3684_0578 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Hyd3684_0578 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Hyd3684_0584 PWY-5316 nicotine biosynthesis Hyd3684_0584 PWY-7342 superpathway of nicotine biosynthesis Hyd3684_0586 PWY-4361 S-methyl-5-thio-α-D-ribose 1-phosphate degradation Hyd3684_0586 PWY-7174 S-methyl-5-thio-α-D-ribose 1-phosphate degradation II Hyd3684_0587 PWY-702 L-methionine biosynthesis II Hyd3684_0596 PWY-1622 formaldehyde assimilation I (serine pathway) Hyd3684_0596 PWY-5392 reductive TCA cycle II Hyd3684_0596 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Hyd3684_0596 PWY-5690 TCA cycle II (plants and fungi) Hyd3684_0596 PWY-5913 TCA cycle VI (obligate autotrophs) Hyd3684_0596 PWY-6728 methylaspartate cycle Hyd3684_0596 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Hyd3684_0596 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Hyd3684_0596 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) Hyd3684_0602 PWY-3801 sucrose degradation II (sucrose synthase) Hyd3684_0602 PWY-6527 stachyose degradation Hyd3684_0602 PWY-6981 chitin biosynthesis Hyd3684_0602 PWY-7238 sucrose biosynthesis II Hyd3684_0602 PWY-7343 UDP-glucose biosynthesis Hyd3684_0603 PWY-5067 glycogen biosynthesis II (from UDP-D-Glucose) Hyd3684_0603 PWY-622 starch biosynthesis Hyd3684_0623 PWY-3781 aerobic respiration I (cytochrome c) Hyd3684_0623 PWY-4302 aerobic respiration III (alternative oxidase pathway) Hyd3684_0623 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Hyd3684_0623 PWY-5690 TCA cycle II (plants and fungi) Hyd3684_0623 PWY-6728 methylaspartate cycle Hyd3684_0623 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Hyd3684_0623 PWY-7254 TCA cycle VII (acetate-producers) Hyd3684_0623 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Hyd3684_0628 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Hyd3684_0628 PWY-5189 tetrapyrrole biosynthesis II (from glycine) Hyd3684_0633 PWY-7221 guanosine ribonucleotides de novo biosynthesis Hyd3684_0638 PWY-7219 adenosine ribonucleotides de novo biosynthesis Hyd3684_0648 PWY-6703 preQ0 biosynthesis Hyd3684_0659 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Hyd3684_0676 PWY-2301 myo-inositol biosynthesis Hyd3684_0676 PWY-4661 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) Hyd3684_0676 PWY-6372 1D-myo-inositol hexakisphosphate biosynthesis IV (Dictyostelium) Hyd3684_0676 PWY-6580 phosphatidylinositol biosynthesis I (bacteria) Hyd3684_0676 PWY-6664 di-myo-inositol phosphate biosynthesis Hyd3684_0679 PWY-7219 adenosine ribonucleotides de novo biosynthesis Hyd3684_0682 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) Hyd3684_0682 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) Hyd3684_0685 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Hyd3684_0730 PWY-6938 NADH repair Hyd3684_0731 PWY-1042 glycolysis IV (plant cytosol) Hyd3684_0731 PWY-5484 glycolysis II (from fructose 6-phosphate) Hyd3684_0731 PWY-6886 1-butanol autotrophic biosynthesis Hyd3684_0731 PWY-6901 superpathway of glucose and xylose degradation Hyd3684_0731 PWY-7003 glycerol degradation to butanol Hyd3684_0732 PWY-4381 fatty acid biosynthesis initiation I Hyd3684_0732 PWY-6799 fatty acid biosynthesis (plant mitochondria) Hyd3684_0732 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Hyd3684_0733 PWY-3781 aerobic respiration I (cytochrome c) Hyd3684_0733 PWY-4302 aerobic respiration III (alternative oxidase pathway) Hyd3684_0733 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Hyd3684_0733 PWY-5690 TCA cycle II (plants and fungi) Hyd3684_0733 PWY-6728 methylaspartate cycle Hyd3684_0733 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Hyd3684_0733 PWY-7254 TCA cycle VII (acetate-producers) Hyd3684_0733 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Hyd3684_0737 PWY-5041 S-adenosyl-L-methionine cycle II Hyd3684_0737 PWY-5912 2'-deoxymugineic acid phytosiderophore biosynthesis Hyd3684_0745 PWY-3781 aerobic respiration I (cytochrome c) Hyd3684_0745 PWY-4302 aerobic respiration III (alternative oxidase pathway) Hyd3684_0745 PWY-5083 NAD/NADH phosphorylation and dephosphorylation Hyd3684_0745 PWY-6692 Fe(II) oxidation Hyd3684_0754 PWY-3781 aerobic respiration I (cytochrome c) Hyd3684_0754 PWY-4302 aerobic respiration III (alternative oxidase pathway) Hyd3684_0754 PWY-5083 NAD/NADH phosphorylation and dephosphorylation Hyd3684_0754 PWY-6692 Fe(II) oxidation Hyd3684_0757 PWY-7221 guanosine ribonucleotides de novo biosynthesis Hyd3684_0767 PWY-5155 β-alanine biosynthesis III Hyd3684_0773 PWY-3341 L-proline biosynthesis III Hyd3684_0773 PWY-4981 L-proline biosynthesis II (from arginine) Hyd3684_0773 PWY-6344 L-ornithine degradation II (Stickland reaction) Hyd3684_0780 PWY-2941 L-lysine biosynthesis II Hyd3684_0780 PWY-2942 L-lysine biosynthesis III Hyd3684_0780 PWY-5097 L-lysine biosynthesis VI Hyd3684_0780 PWY-6559 spermidine biosynthesis II Hyd3684_0780 PWY-6562 norspermidine biosynthesis Hyd3684_0780 PWY-7153 grixazone biosynthesis Hyd3684_0788 PWY-7158 L-phenylalanine degradation V Hyd3684_0792 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Hyd3684_0800 PWY-6749 CMP-legionaminate biosynthesis I Hyd3684_0801 PWY-5198 factor 420 biosynthesis Hyd3684_0801 PWY-7371 1,4-dihydroxy-6-naphthoate biosynthesis II Hyd3684_0801 PWY-7374 1,4-dihydroxy-6-naphthoate biosynthesis I Hyd3684_0804 PWY-6578 8-amino-7-oxononanoate biosynthesis III Hyd3684_0806 PWY-1861 formaldehyde assimilation II (RuMP Cycle) Hyd3684_0806 PWY-5723 Rubisco shunt Hyd3684_0807 PWY-5686 UMP biosynthesis Hyd3684_0813 PWY-3781 aerobic respiration I (cytochrome c) Hyd3684_0813 PWY-4521 arsenite oxidation I (respiratory) Hyd3684_0813 PWY-6692 Fe(II) oxidation Hyd3684_0813 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Hyd3684_0814 PWY-3781 aerobic respiration I (cytochrome c) Hyd3684_0814 PWY-4521 arsenite oxidation I (respiratory) Hyd3684_0814 PWY-6692 Fe(II) oxidation Hyd3684_0814 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Hyd3684_0820 PWY-4381 fatty acid biosynthesis initiation I Hyd3684_0820 PWY-5743 3-hydroxypropanoate cycle Hyd3684_0820 PWY-5744 glyoxylate assimilation Hyd3684_0820 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Hyd3684_0820 PWY-6679 jadomycin biosynthesis Hyd3684_0820 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Hyd3684_0824 PWY-5659 GDP-mannose biosynthesis Hyd3684_0824 PWY-6073 alginate biosynthesis I (algal) Hyd3684_0824 PWY-6082 alginate biosynthesis II (bacterial) Hyd3684_0824 PWY-882 L-ascorbate biosynthesis I (L-galactose pathway) Hyd3684_0827 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I Hyd3684_0827 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) Hyd3684_0835 PWY-7206 pyrimidine deoxyribonucleotides dephosphorylation Hyd3684_0839 PWY-6167 flavin biosynthesis II (archaea) Hyd3684_0839 PWY-6168 flavin biosynthesis III (fungi) Hyd3684_0839 PWY-7219 adenosine ribonucleotides de novo biosynthesis Hyd3684_0874 PWY-6160 3-dehydroquinate biosynthesis II (archaea) Hyd3684_0875 PWY-1861 formaldehyde assimilation II (RuMP Cycle) Hyd3684_0875 PWY-5723 Rubisco shunt Hyd3684_0884 PWY-1722 formate reduction to 5,10-methylenetetrahydrofolate Hyd3684_0884 PWY-2201 folate transformations I Hyd3684_0884 PWY-3841 folate transformations II Hyd3684_0884 PWY-5030 L-histidine degradation III Hyd3684_0884 PWY-5497 purine nucleobases degradation II (anaerobic) Hyd3684_0884 PWY-6613 tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate Hyd3684_0914 PWY-5392 reductive TCA cycle II Hyd3684_0914 PWY-5537 pyruvate fermentation to acetate V Hyd3684_0914 PWY-5538 pyruvate fermentation to acetate VI Hyd3684_0914 PWY-5690 TCA cycle II (plants and fungi) Hyd3684_0914 PWY-5913 TCA cycle VI (obligate autotrophs) Hyd3684_0914 PWY-6728 methylaspartate cycle Hyd3684_0914 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Hyd3684_0914 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Hyd3684_0915 PWY-5392 reductive TCA cycle II Hyd3684_0915 PWY-5537 pyruvate fermentation to acetate V Hyd3684_0915 PWY-5538 pyruvate fermentation to acetate VI Hyd3684_0915 PWY-5690 TCA cycle II (plants and fungi) Hyd3684_0915 PWY-5913 TCA cycle VI (obligate autotrophs) Hyd3684_0915 PWY-6728 methylaspartate cycle Hyd3684_0915 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Hyd3684_0915 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Hyd3684_0921 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) Hyd3684_0921 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) Hyd3684_0922 PWY-5971 palmitate biosynthesis II (bacteria and plants) Hyd3684_0922 PWY-5973 cis-vaccenate biosynthesis Hyd3684_0922 PWY-5989 stearate biosynthesis II (bacteria and plants) Hyd3684_0922 PWY-5994 palmitate biosynthesis I (animals and fungi) Hyd3684_0922 PWY-6113 superpathway of mycolate biosynthesis Hyd3684_0922 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) Hyd3684_0922 PWY-6519 8-amino-7-oxononanoate biosynthesis I Hyd3684_0922 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Hyd3684_0922 PWYG-321 mycolate biosynthesis Hyd3684_0939 PWY-5381 pyridine nucleotide cycling (plants) Hyd3684_0941 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Hyd3684_0941 PWY-5686 UMP biosynthesis Hyd3684_0941 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Hyd3684_0958 PWY-6832 2-aminoethylphosphonate degradation II Hyd3684_0959 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Hyd3684_0959 PWY-7176 UTP and CTP de novo biosynthesis Hyd3684_0959 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Hyd3684_0959 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Hyd3684_0959 PWY-7197 pyrimidine deoxyribonucleotide phosphorylation Hyd3684_0959 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Hyd3684_0959 PWY-7205 CMP phosphorylation Hyd3684_0959 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Hyd3684_0959 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II Hyd3684_0959 PWY-7221 guanosine ribonucleotides de novo biosynthesis Hyd3684_0959 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II Hyd3684_0959 PWY-7224 purine deoxyribonucleosides salvage Hyd3684_0959 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I Hyd3684_0959 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis Hyd3684_0972 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Hyd3684_0980 PWY-6749 CMP-legionaminate biosynthesis I Hyd3684_0987 PWY-7380 biotin biosynthesis from 8-amino-7-oxononanoate II Hyd3684_0991 PWY-4981 L-proline biosynthesis II (from arginine) Hyd3684_0991 PWY-4984 urea cycle Hyd3684_0991 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Hyd3684_0994 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Hyd3684_0994 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Hyd3684_0998 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) Hyd3684_1004 PWY-7219 adenosine ribonucleotides de novo biosynthesis Hyd3684_1011 PWY-7219 adenosine ribonucleotides de novo biosynthesis Hyd3684_1016 PWY-4381 fatty acid biosynthesis initiation I Hyd3684_1016 PWY-5743 3-hydroxypropanoate cycle Hyd3684_1016 PWY-5744 glyoxylate assimilation Hyd3684_1016 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Hyd3684_1016 PWY-6679 jadomycin biosynthesis Hyd3684_1016 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Hyd3684_1026 PWY-2301 myo-inositol biosynthesis Hyd3684_1026 PWY-4702 phytate degradation I Hyd3684_1026 PWY-6363 D-myo-inositol (1,4,5)-trisphosphate degradation Hyd3684_1029 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Hyd3684_1038 PWY-7560 methylerythritol phosphate pathway II Hyd3684_1040 PWY-5316 nicotine biosynthesis Hyd3684_1040 PWY-5381 pyridine nucleotide cycling (plants) Hyd3684_1040 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde Hyd3684_1040 PWY-7342 superpathway of nicotine biosynthesis Hyd3684_1051 PWY-6891 thiazole biosynthesis II (Bacillus) Hyd3684_1051 PWY-6892 thiazole biosynthesis I (E. coli) Hyd3684_1051 PWY-7560 methylerythritol phosphate pathway II Hyd3684_1055 PWY-5941 glycogen degradation II (eukaryotic) Hyd3684_1055 PWY-622 starch biosynthesis Hyd3684_1055 PWY-6731 starch degradation III Hyd3684_1055 PWY-6737 starch degradation V Hyd3684_1055 PWY-7238 sucrose biosynthesis II Hyd3684_1059 PWY-101 photosynthesis light reactions Hyd3684_1059 PWY-7230 ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic) Hyd3684_1083 PWY-6123 inosine-5'-phosphate biosynthesis I Hyd3684_1083 PWY-7234 inosine-5'-phosphate biosynthesis III Hyd3684_1087 PWY-7219 adenosine ribonucleotides de novo biosynthesis Hyd3684_1092 PWY-6123 inosine-5'-phosphate biosynthesis I Hyd3684_1092 PWY-6124 inosine-5'-phosphate biosynthesis II Hyd3684_1092 PWY-7234 inosine-5'-phosphate biosynthesis III Hyd3684_1101 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Hyd3684_1101 PWY-5686 UMP biosynthesis Hyd3684_1101 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Hyd3684_1110 PWY-5265 peptidoglycan biosynthesis II (staphylococci) Hyd3684_1110 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) Hyd3684_1116 PWY-6890 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis Hyd3684_1130 PWY-6823 molybdenum cofactor biosynthesis Hyd3684_1132 PWY-6891 thiazole biosynthesis II (Bacillus) Hyd3684_1132 PWY-6892 thiazole biosynthesis I (E. coli) Hyd3684_1133 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Hyd3684_1133 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Hyd3684_1148 PWY-5667 CDP-diacylglycerol biosynthesis I Hyd3684_1148 PWY-5981 CDP-diacylglycerol biosynthesis III Hyd3684_1151 PWY-7560 methylerythritol phosphate pathway II Hyd3684_1155 PWY-2941 L-lysine biosynthesis II Hyd3684_1155 PWY-5097 L-lysine biosynthesis VI Hyd3684_1160 PWY-5269 cardiolipin biosynthesis II Hyd3684_1160 PWY-5668 cardiolipin biosynthesis I Hyd3684_1163 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) Hyd3684_1163 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) Hyd3684_1163 PWY-6897 thiamin salvage II Hyd3684_1163 PWY-6907 thiamin diphosphate biosynthesis III (Staphylococcus) Hyd3684_1163 PWY-6908 thiamin diphosphate biosynthesis IV (eukaryotes) Hyd3684_1163 PWY-7353 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) Hyd3684_1163 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast) Hyd3684_1175 PWY-6700 queuosine biosynthesis Hyd3684_1178 PWY-6871 3-methylbutanol biosynthesis Hyd3684_1179 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Hyd3684_1180 PWY-5265 peptidoglycan biosynthesis II (staphylococci) Hyd3684_1180 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) Hyd3684_1180 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) Hyd3684_1184 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Hyd3684_1184 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Hyd3684_1184 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Hyd3684_1194 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Hyd3684_1194 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Hyd3684_1196 PWY-5101 L-isoleucine biosynthesis II Hyd3684_1196 PWY-5103 L-isoleucine biosynthesis III Hyd3684_1196 PWY-5104 L-isoleucine biosynthesis IV Hyd3684_1196 PWY-5938 (R)-acetoin biosynthesis I Hyd3684_1196 PWY-5939 (R)-acetoin biosynthesis II Hyd3684_1196 PWY-6389 (S)-acetoin biosynthesis Hyd3684_1196 PWY-7111 pyruvate fermentation to isobutanol (engineered) Hyd3684_1197 PWY-5101 L-isoleucine biosynthesis II Hyd3684_1197 PWY-5103 L-isoleucine biosynthesis III Hyd3684_1197 PWY-5104 L-isoleucine biosynthesis IV Hyd3684_1197 PWY-5938 (R)-acetoin biosynthesis I Hyd3684_1197 PWY-5939 (R)-acetoin biosynthesis II Hyd3684_1197 PWY-6389 (S)-acetoin biosynthesis Hyd3684_1197 PWY-7111 pyruvate fermentation to isobutanol (engineered) Hyd3684_1198 PWY-5101 L-isoleucine biosynthesis II Hyd3684_1198 PWY-6871 3-methylbutanol biosynthesis Hyd3684_1209 PWY-6829 tRNA methylation (yeast) Hyd3684_1211 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Hyd3684_1211 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Hyd3684_1211 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Hyd3684_1211 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Hyd3684_1211 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II Hyd3684_1211 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II Hyd3684_1211 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I Hyd3684_1211 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis Hyd3684_1213 PWY-7560 methylerythritol phosphate pathway II Hyd3684_1221 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Hyd3684_1221 PWY-5189 tetrapyrrole biosynthesis II (from glycine) Hyd3684_1238 PWY-1042 glycolysis IV (plant cytosol) Hyd3684_1238 PWY-1622 formaldehyde assimilation I (serine pathway) Hyd3684_1238 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) Hyd3684_1238 PWY-5484 glycolysis II (from fructose 6-phosphate) Hyd3684_1238 PWY-5723 Rubisco shunt Hyd3684_1238 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Hyd3684_1238 PWY-6886 1-butanol autotrophic biosynthesis Hyd3684_1238 PWY-6901 superpathway of glucose and xylose degradation Hyd3684_1238 PWY-7003 glycerol degradation to butanol Hyd3684_1238 PWY-7124 ethylene biosynthesis V (engineered) Hyd3684_1238 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) Hyd3684_1241 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Hyd3684_1241 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Hyd3684_1241 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Hyd3684_1244 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Hyd3684_1244 PWY-6613 tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate Hyd3684_1245 PWY-7396 butanol and isobutanol biosynthesis (engineered) Hyd3684_1251 PWY-5392 reductive TCA cycle II Hyd3684_1251 PWY-5537 pyruvate fermentation to acetate V Hyd3684_1251 PWY-5538 pyruvate fermentation to acetate VI Hyd3684_1251 PWY-5690 TCA cycle II (plants and fungi) Hyd3684_1251 PWY-5913 TCA cycle VI (obligate autotrophs) Hyd3684_1251 PWY-6728 methylaspartate cycle Hyd3684_1251 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Hyd3684_1251 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Hyd3684_1252 PWY-5392 reductive TCA cycle II Hyd3684_1252 PWY-5537 pyruvate fermentation to acetate V Hyd3684_1252 PWY-5538 pyruvate fermentation to acetate VI Hyd3684_1252 PWY-5690 TCA cycle II (plants and fungi) Hyd3684_1252 PWY-5913 TCA cycle VI (obligate autotrophs) Hyd3684_1252 PWY-6728 methylaspartate cycle Hyd3684_1252 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Hyd3684_1252 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Hyd3684_1257 PWY-5523 5,6-dimethylbenzimidazole biosynthesis Hyd3684_1257 PWY-6167 flavin biosynthesis II (archaea) Hyd3684_1257 PWY-6168 flavin biosynthesis III (fungi) Hyd3684_1265 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) Hyd3684_1266 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II Hyd3684_1266 PWY-6855 chitin degradation I (archaea) Hyd3684_1266 PWY-6906 chitin derivatives degradation Hyd3684_1271 PWY-7560 methylerythritol phosphate pathway II Hyd3684_1280 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Hyd3684_1280 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Hyd3684_1292 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Hyd3684_1292 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Hyd3684_1292 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Hyd3684_1292 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Hyd3684_1292 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II Hyd3684_1292 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II Hyd3684_1292 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I Hyd3684_1292 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis Hyd3684_1295 PWY-1861 formaldehyde assimilation II (RuMP Cycle) Hyd3684_1295 PWY-5723 Rubisco shunt Hyd3684_1295 PWY-6891 thiazole biosynthesis II (Bacillus) Hyd3684_1295 PWY-6892 thiazole biosynthesis I (E. coli) Hyd3684_1295 PWY-6901 superpathway of glucose and xylose degradation Hyd3684_1295 PWY-7560 methylerythritol phosphate pathway II Hyd3684_1304 PWY-5303 thiosulfate oxidation II (via tetrathionate) Hyd3684_1319 PWY-6167 flavin biosynthesis II (archaea) Hyd3684_1319 PWY-6168 flavin biosynthesis III (fungi) Hyd3684_1319 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) Hyd3684_1323 PWY-6823 molybdenum cofactor biosynthesis Hyd3684_1323 PWY-6891 thiazole biosynthesis II (Bacillus) Hyd3684_1323 PWY-6892 thiazole biosynthesis I (E. coli) Hyd3684_1323 PWY-7250 [2Fe-2S] iron-sulfur cluster biosynthesis Hyd3684_1334 PWY-5839 menaquinol-7 biosynthesis Hyd3684_1334 PWY-5844 menaquinol-9 biosynthesis Hyd3684_1334 PWY-5849 menaquinol-6 biosynthesis Hyd3684_1334 PWY-5890 menaquinol-10 biosynthesis Hyd3684_1334 PWY-5891 menaquinol-11 biosynthesis Hyd3684_1334 PWY-5892 menaquinol-12 biosynthesis Hyd3684_1334 PWY-5895 menaquinol-13 biosynthesis Hyd3684_1335 PWY-1042 glycolysis IV (plant cytosol) Hyd3684_1335 PWY-5484 glycolysis II (from fructose 6-phosphate) Hyd3684_1335 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Hyd3684_1335 PWY-7003 glycerol degradation to butanol Hyd3684_1340 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Hyd3684_1340 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Hyd3684_1344 PWY-5057 L-valine degradation II Hyd3684_1344 PWY-5076 L-leucine degradation III Hyd3684_1344 PWY-5078 L-isoleucine degradation II Hyd3684_1344 PWY-5101 L-isoleucine biosynthesis II Hyd3684_1344 PWY-5103 L-isoleucine biosynthesis III Hyd3684_1344 PWY-5104 L-isoleucine biosynthesis IV Hyd3684_1344 PWY-5108 L-isoleucine biosynthesis V Hyd3684_1347 PWY-6478 GDP-D-glycero-α-D-manno-heptose biosynthesis Hyd3684_1369 PWY-5083 NAD/NADH phosphorylation and dephosphorylation Hyd3684_1369 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) Hyd3684_1369 PWY-7269 NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast) Hyd3684_1383 PWY-5198 factor 420 biosynthesis Hyd3684_1385 PWY-5381 pyridine nucleotide cycling (plants) Hyd3684_1385 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde Hyd3684_1390 PWY-7560 methylerythritol phosphate pathway II Hyd3684_1407 PWY-5874 heme degradation Hyd3684_1407 PWY-5915 phycoerythrobilin biosynthesis I Hyd3684_1407 PWY-5917 phycocyanobilin biosynthesis Hyd3684_1407 PWY-7170 phytochromobilin biosynthesis Hyd3684_1422 PWY-6123 inosine-5'-phosphate biosynthesis I Hyd3684_1422 PWY-6124 inosine-5'-phosphate biosynthesis II Hyd3684_1422 PWY-7219 adenosine ribonucleotides de novo biosynthesis Hyd3684_1422 PWY-7234 inosine-5'-phosphate biosynthesis III Hyd3684_1429 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation Hyd3684_1443 PWY-5958 acridone alkaloid biosynthesis Hyd3684_1443 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis Hyd3684_1443 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis Hyd3684_1467 PWY-5041 S-adenosyl-L-methionine cycle II Hyd3684_1467 PWY-6151 S-adenosyl-L-methionine cycle I Hyd3684_1467 PWY-6936 seleno-amino acid biosynthesis Hyd3684_1467 PWY-702 L-methionine biosynthesis II Hyd3684_1472 PWY-7205 CMP phosphorylation Hyd3684_1477 PWY-4361 S-methyl-5-thio-α-D-ribose 1-phosphate degradation Hyd3684_1477 PWY-5389 3-methylthiopropanoate biosynthesis Hyd3684_1478 PWY-4361 S-methyl-5-thio-α-D-ribose 1-phosphate degradation Hyd3684_1480 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Hyd3684_1480 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Hyd3684_1487 PWY-1622 formaldehyde assimilation I (serine pathway) Hyd3684_1487 PWY-5484 glycolysis II (from fructose 6-phosphate) Hyd3684_1496 PWY-3781 aerobic respiration I (cytochrome c) Hyd3684_1496 PWY-6692 Fe(II) oxidation Hyd3684_1496 PWY-7082 ammonia oxidation IV (autotrophic ammonia oxidizers) Hyd3684_1496 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Hyd3684_1501 PWY-3221 dTDP-L-rhamnose biosynthesis II Hyd3684_1501 PWY-6808 dTDP-D-forosamine biosynthesis Hyd3684_1501 PWY-6942 dTDP-D-desosamine biosynthesis Hyd3684_1501 PWY-6953 dTDP-3-acetamido-3,6-dideoxy-α-D-galactose biosynthesis Hyd3684_1501 PWY-6973 dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis Hyd3684_1501 PWY-6974 dTDP-L-olivose biosynthesis Hyd3684_1501 PWY-6976 dTDP-L-mycarose biosynthesis Hyd3684_1501 PWY-7104 dTDP-L-megosamine biosynthesis Hyd3684_1501 PWY-7301 dTDP-β-L-noviose biosynthesis Hyd3684_1501 PWY-7312 dTDP-D-β-fucofuranose biosynthesis Hyd3684_1501 PWY-7315 dTDP-N-acetylthomosamine biosynthesis Hyd3684_1501 PWY-7316 dTDP-N-acetylviosamine biosynthesis Hyd3684_1501 PWY-7318 dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis Hyd3684_1501 PWY-7413 dTDP-6-deoxy-α-D-allose biosynthesis Hyd3684_1501 PWY-7414 dTDP-α-D-mycaminose biosynthesis Hyd3684_1501 PWY-7440 dTDP-β-L-4-epi-vancosamine biosynthesis Hyd3684_1503 PWY-3221 dTDP-L-rhamnose biosynthesis II Hyd3684_1503 PWY-6808 dTDP-D-forosamine biosynthesis Hyd3684_1503 PWY-6942 dTDP-D-desosamine biosynthesis Hyd3684_1503 PWY-6953 dTDP-3-acetamido-3,6-dideoxy-α-D-galactose biosynthesis Hyd3684_1503 PWY-6973 dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis Hyd3684_1503 PWY-6974 dTDP-L-olivose biosynthesis Hyd3684_1503 PWY-6976 dTDP-L-mycarose biosynthesis Hyd3684_1503 PWY-7104 dTDP-L-megosamine biosynthesis Hyd3684_1503 PWY-7301 dTDP-β-L-noviose biosynthesis Hyd3684_1503 PWY-7312 dTDP-D-β-fucofuranose biosynthesis Hyd3684_1503 PWY-7315 dTDP-N-acetylthomosamine biosynthesis Hyd3684_1503 PWY-7316 dTDP-N-acetylviosamine biosynthesis Hyd3684_1503 PWY-7318 dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis Hyd3684_1503 PWY-7413 dTDP-6-deoxy-α-D-allose biosynthesis Hyd3684_1503 PWY-7414 dTDP-α-D-mycaminose biosynthesis Hyd3684_1503 PWY-7440 dTDP-β-L-4-epi-vancosamine biosynthesis Hyd3684_1506 PWY-2201 folate transformations I Hyd3684_1506 PWY-3841 folate transformations II Hyd3684_1507 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) Hyd3684_1507 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) Hyd3684_1507 PWY-6897 thiamin salvage II Hyd3684_1507 PWY-6907 thiamin diphosphate biosynthesis III (Staphylococcus) Hyd3684_1507 PWY-6908 thiamin diphosphate biosynthesis IV (eukaryotes) Hyd3684_1507 PWY-7353 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) Hyd3684_1507 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast) Hyd3684_1510 PWY-7176 UTP and CTP de novo biosynthesis Hyd3684_1510 PWY-7177 UTP and CTP dephosphorylation II Hyd3684_1510 PWY-7185 UTP and CTP dephosphorylation I Hyd3684_1514 PWY-6823 molybdenum cofactor biosynthesis Hyd3684_1515 PWY-6823 molybdenum cofactor biosynthesis Hyd3684_1518 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) Hyd3684_1542 PWY-5738 GDP-6-deoxy-D-talose biosynthesis Hyd3684_1542 PWY-5739 GDP-D-perosamine biosynthesis Hyd3684_1542 PWY-5740 GDP-L-colitose biosynthesis Hyd3684_1542 PWY-66 GDP-L-fucose biosynthesis I (from GDP-D-mannose) Hyd3684_1558 PWY-5484 glycolysis II (from fructose 6-phosphate) Hyd3684_1560 PWY-5971 palmitate biosynthesis II (bacteria and plants) Hyd3684_1560 PWY-5973 cis-vaccenate biosynthesis Hyd3684_1560 PWY-5989 stearate biosynthesis II (bacteria and plants) Hyd3684_1560 PWY-6113 superpathway of mycolate biosynthesis Hyd3684_1560 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) Hyd3684_1560 PWY-6519 8-amino-7-oxononanoate biosynthesis I Hyd3684_1560 PWY-7096 triclosan resistance Hyd3684_1560 PWYG-321 mycolate biosynthesis Hyd3684_1561 PWY-6160 3-dehydroquinate biosynthesis II (archaea) Hyd3684_1566 PWY-2161 folate polyglutamylation Hyd3684_1568 PWY-5269 cardiolipin biosynthesis II Hyd3684_1568 PWY-5668 cardiolipin biosynthesis I Hyd3684_1569 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Hyd3684_1569 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Hyd3684_1569 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Hyd3684_1569 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) Hyd3684_1576 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I Hyd3684_1576 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) Hyd3684_1592 PWY-7303 3-dimethylallyl-4-hydroxybenzoate biosynthesis Hyd3684_1602 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Hyd3684_1602 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Hyd3684_1605 PWY-7204 pyridoxal 5'-phosphate salvage II (plants) Hyd3684_1605 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)