Jden_0012	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Jden_0034	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Jden_0066	PWY-7310	D-glucosaminate degradation
Jden_0073	PWY-4061	glutathione-mediated detoxification I
Jden_0073	PWY-6842	glutathione-mediated detoxification II
Jden_0073	PWY-7112	4-hydroxy-2-nonenal detoxification
Jden_0073	PWY-7533	gliotoxin biosynthesis
Jden_0093	PWY-6703	preQ<sub>0</sub> biosynthesis
Jden_0104	PWY-6807	xyloglucan degradation II (exoglucanase)
Jden_0108	PWY-4381	fatty acid biosynthesis initiation I
Jden_0126	PWY-2723	trehalose degradation V
Jden_0126	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Jden_0126	PWY-5661	GDP-glucose biosynthesis
Jden_0126	PWY-5940	streptomycin biosynthesis
Jden_0126	PWY-621	sucrose degradation III (sucrose invertase)
Jden_0126	PWY-622	starch biosynthesis
Jden_0126	PWY-6731	starch degradation III
Jden_0126	PWY-6737	starch degradation V
Jden_0126	PWY-6981	chitin biosynthesis
Jden_0126	PWY-7238	sucrose biosynthesis II
Jden_0126	PWY-7343	UDP-glucose biosynthesis
Jden_0127	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Jden_0127	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Jden_0146	PWY-4981	L-proline biosynthesis II (from arginine)
Jden_0150	PWY-6523	nitrite-dependent anaerobic methane oxidation
Jden_0150	PWY-6748	nitrate reduction VII (denitrification)
Jden_0150	PWY-7084	nitrifier denitrification
Jden_0168	PWY-5958	acridone alkaloid biosynthesis
Jden_0168	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Jden_0168	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Jden_0186	PWY-6910	hydroxymethylpyrimidine salvage
Jden_0186	PWY-7356	thiamin salvage IV (yeast)
Jden_0186	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Jden_0189	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Jden_0189	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Jden_0189	PWY-6936	seleno-amino acid biosynthesis
Jden_0189	PWY-702	L-methionine biosynthesis II
Jden_0190	PWY-2201	folate transformations I
Jden_0190	PWY-3841	folate transformations II
Jden_0200	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Jden_0200	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Jden_0200	PWY-6936	seleno-amino acid biosynthesis
Jden_0200	PWY-702	L-methionine biosynthesis II
Jden_0226	PWY-6906	chitin derivatives degradation
Jden_0226	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Jden_0226	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Jden_0232	PWY-6902	chitin degradation II
Jden_0237	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Jden_0237	PWY-6855	chitin degradation I (archaea)
Jden_0237	PWY-6906	chitin derivatives degradation
Jden_0258	PWY-2723	trehalose degradation V
Jden_0258	PWY-3801	sucrose degradation II (sucrose synthase)
Jden_0258	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Jden_0258	PWY-5661	GDP-glucose biosynthesis
Jden_0258	PWY-5661-1	Jden_0258
Jden_0258	PWY-5940	streptomycin biosynthesis
Jden_0258	PWY-5941	glycogen degradation II (eukaryotic)
Jden_0258	PWY-622	starch biosynthesis
Jden_0258	PWY-6731	starch degradation III
Jden_0258	PWY-6737	starch degradation V
Jden_0258	PWY-6749	CMP-legionaminate biosynthesis I
Jden_0258	PWY-7238	sucrose biosynthesis II
Jden_0258	PWY-7343	UDP-glucose biosynthesis
Jden_0264	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Jden_0264	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Jden_0264	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Jden_0265	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Jden_0306	PWY-5386	methylglyoxal degradation I
Jden_0311	PWY-6807	xyloglucan degradation II (exoglucanase)
Jden_0338	PWY-5943	&beta;-carotene biosynthesis
Jden_0338	PWY-5947	lutein biosynthesis
Jden_0339	PWY-5943	&beta;-carotene biosynthesis
Jden_0339	PWY-5947	lutein biosynthesis
Jden_0343	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
Jden_0343	PWY-6174	mevalonate pathway II (archaea)
Jden_0343	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
Jden_0343	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
Jden_0343	PWY-7102	bisabolene biosynthesis
Jden_0343	PWY-7391	isoprene biosynthesis II (engineered)
Jden_0343	PWY-7524	mevalonate pathway III (archaea)
Jden_0343	PWY-7560	methylerythritol phosphate pathway II
Jden_0343	PWY-922	mevalonate pathway I
Jden_0356	PWY-7183	pyrimidine nucleobases salvage I
Jden_0370	PWY-3801	sucrose degradation II (sucrose synthase)
Jden_0370	PWY-5054	sorbitol biosynthesis I
Jden_0370	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Jden_0370	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Jden_0370	PWY-5659	GDP-mannose biosynthesis
Jden_0370	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Jden_0370	PWY-621	sucrose degradation III (sucrose invertase)
Jden_0370	PWY-622	starch biosynthesis
Jden_0370	PWY-6531	mannitol cycle
Jden_0370	PWY-6981	chitin biosynthesis
Jden_0370	PWY-7238	sucrose biosynthesis II
Jden_0370	PWY-7347	sucrose biosynthesis III
Jden_0370	PWY-7385	1,3-propanediol biosynthesis (engineered)
Jden_0378	PWY-6807	xyloglucan degradation II (exoglucanase)
Jden_0419	PWY-2941	L-lysine biosynthesis II
Jden_0419	PWY-2942	L-lysine biosynthesis III
Jden_0419	PWY-5097	L-lysine biosynthesis VI
Jden_0419	PWY-6559	spermidine biosynthesis II
Jden_0419	PWY-6562	norspermidine biosynthesis
Jden_0419	PWY-7153	grixazone biosynthesis
Jden_0420	PWY-2941	L-lysine biosynthesis II
Jden_0420	PWY-2942	L-lysine biosynthesis III
Jden_0420	PWY-5097	L-lysine biosynthesis VI
Jden_0420	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Jden_0420	PWY-6559	spermidine biosynthesis II
Jden_0420	PWY-6562	norspermidine biosynthesis
Jden_0420	PWY-7153	grixazone biosynthesis
Jden_0420	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Jden_0423	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Jden_0423	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Jden_0423	PWY-6164	3-dehydroquinate biosynthesis I
Jden_0467	PWY-4261	glycerol degradation I
Jden_0485	PWY-4261	glycerol degradation I
Jden_0487	PWY-4261	glycerol degradation I
Jden_0487	PWY-6118	glycerol-3-phosphate shuttle
Jden_0487	PWY-6952	glycerophosphodiester degradation
Jden_0527	PWY-5839	menaquinol-7 biosynthesis
Jden_0527	PWY-5851	demethylmenaquinol-9 biosynthesis
Jden_0527	PWY-5852	demethylmenaquinol-8 biosynthesis I
Jden_0527	PWY-5853	demethylmenaquinol-6 biosynthesis I
Jden_0527	PWY-5890	menaquinol-10 biosynthesis
Jden_0527	PWY-5891	menaquinol-11 biosynthesis
Jden_0527	PWY-5892	menaquinol-12 biosynthesis
Jden_0527	PWY-5895	menaquinol-13 biosynthesis
Jden_0531	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Jden_0531	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Jden_0534	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Jden_0534	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Jden_0536	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Jden_0536	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Jden_0536	PWY-5901	2,3-dihydroxybenzoate biosynthesis
Jden_0536	PWY-6406	salicylate biosynthesis I
Jden_0537	PWY-5839	menaquinol-7 biosynthesis
Jden_0537	PWY-5844	menaquinol-9 biosynthesis
Jden_0537	PWY-5849	menaquinol-6 biosynthesis
Jden_0537	PWY-5890	menaquinol-10 biosynthesis
Jden_0537	PWY-5891	menaquinol-11 biosynthesis
Jden_0537	PWY-5892	menaquinol-12 biosynthesis
Jden_0537	PWY-5895	menaquinol-13 biosynthesis
Jden_0551	PWY-3781	aerobic respiration I (cytochrome c)
Jden_0551	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Jden_0551	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Jden_0551	PWY-6692	Fe(II) oxidation
Jden_0567	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Jden_0567	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Jden_0608	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Jden_0619	PWY-6749	CMP-legionaminate biosynthesis I
Jden_0622	PWY-3961	phosphopantothenate biosynthesis II
Jden_0623	PWY-6749	CMP-legionaminate biosynthesis I
Jden_0624	PWY-6012	acyl carrier protein metabolism I
Jden_0624	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Jden_0626	PWY-6938	NADH repair
Jden_0627	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Jden_0633	PWY-6840	homoglutathione biosynthesis
Jden_0633	PWY-7255	ergothioneine biosynthesis I (bacteria)
Jden_0638	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Jden_0638	PWY-6596	adenosine nucleotides degradation I
Jden_0638	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Jden_0642	PWY-5482	pyruvate fermentation to acetate II
Jden_0642	PWY-5485	pyruvate fermentation to acetate IV
Jden_0642	PWY-5497	purine nucleobases degradation II (anaerobic)
Jden_0643	PWY-1281	sulfoacetaldehyde degradation I
Jden_0643	PWY-5482	pyruvate fermentation to acetate II
Jden_0643	PWY-5485	pyruvate fermentation to acetate IV
Jden_0643	PWY-5497	purine nucleobases degradation II (anaerobic)
Jden_0643	PWY-6637	sulfolactate degradation II
Jden_0650	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Jden_0657	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Jden_0658	PWY-5194	siroheme biosynthesis
Jden_0658	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Jden_0659	PWY-5278	sulfite oxidation III
Jden_0659	PWY-5340	sulfate activation for sulfonation
Jden_0659	PWY-6683	sulfate reduction III (assimilatory)
Jden_0659	PWY-6932	selenate reduction
Jden_0660	PWY-5278	sulfite oxidation III
Jden_0660	PWY-5340	sulfate activation for sulfonation
Jden_0660	PWY-6683	sulfate reduction III (assimilatory)
Jden_0660	PWY-6932	selenate reduction
Jden_0662	PWY-6683	sulfate reduction III (assimilatory)
Jden_0671	PWY-5392	reductive TCA cycle II
Jden_0671	PWY-5537	pyruvate fermentation to acetate V
Jden_0671	PWY-5538	pyruvate fermentation to acetate VI
Jden_0671	PWY-5690	TCA cycle II (plants and fungi)
Jden_0671	PWY-5913	TCA cycle VI (obligate autotrophs)
Jden_0671	PWY-6728	methylaspartate cycle
Jden_0671	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Jden_0671	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Jden_0672	PWY-5392	reductive TCA cycle II
Jden_0672	PWY-5537	pyruvate fermentation to acetate V
Jden_0672	PWY-5538	pyruvate fermentation to acetate VI
Jden_0672	PWY-5690	TCA cycle II (plants and fungi)
Jden_0672	PWY-5913	TCA cycle VI (obligate autotrophs)
Jden_0672	PWY-6728	methylaspartate cycle
Jden_0672	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Jden_0672	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Jden_0674	PWY-5941	glycogen degradation II (eukaryotic)
Jden_0674	PWY-622	starch biosynthesis
Jden_0674	PWY-6731	starch degradation III
Jden_0674	PWY-6737	starch degradation V
Jden_0674	PWY-7238	sucrose biosynthesis II
Jden_0677	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Jden_0677	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Jden_0678	PWY-6123	inosine-5'-phosphate biosynthesis I
Jden_0678	PWY-6124	inosine-5'-phosphate biosynthesis II
Jden_0678	PWY-7234	inosine-5'-phosphate biosynthesis III
Jden_0681	PWY-6167	flavin biosynthesis II (archaea)
Jden_0681	PWY-6168	flavin biosynthesis III (fungi)
Jden_0681	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Jden_0682	PWY-6167	flavin biosynthesis II (archaea)
Jden_0682	PWY-6168	flavin biosynthesis III (fungi)
Jden_0682	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Jden_0683	PWY-6167	flavin biosynthesis II (archaea)
Jden_0683	PWY-6168	flavin biosynthesis III (fungi)
Jden_0685	PWY-5913	TCA cycle VI (obligate autotrophs)
Jden_0685	PWY-6549	L-glutamine biosynthesis III
Jden_0685	PWY-6728	methylaspartate cycle
Jden_0685	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Jden_0685	PWY-7124	ethylene biosynthesis V (engineered)
Jden_0685	PWY-7254	TCA cycle VII (acetate-producers)
Jden_0685	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Jden_0688	PWY-1622	formaldehyde assimilation I (serine pathway)
Jden_0688	PWY-5392	reductive TCA cycle II
Jden_0688	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Jden_0688	PWY-5690	TCA cycle II (plants and fungi)
Jden_0688	PWY-5913	TCA cycle VI (obligate autotrophs)
Jden_0688	PWY-6728	methylaspartate cycle
Jden_0688	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Jden_0688	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Jden_0688	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Jden_0690	PWY-2201	folate transformations I
Jden_0690	PWY-5497	purine nucleobases degradation II (anaerobic)
Jden_0694	PWY-1622	formaldehyde assimilation I (serine pathway)
Jden_0694	PWY-181	photorespiration
Jden_0694	PWY-2161	folate polyglutamylation
Jden_0694	PWY-2201	folate transformations I
Jden_0694	PWY-3661	glycine betaine degradation I
Jden_0694	PWY-3661-1	glycine betaine degradation II (mammalian)
Jden_0694	PWY-3841	folate transformations II
Jden_0694	PWY-5497	purine nucleobases degradation II (anaerobic)
Jden_0695	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Jden_0695	PWY-2201	folate transformations I
Jden_0695	PWY-3841	folate transformations II
Jden_0695	PWY-5030	L-histidine degradation III
Jden_0695	PWY-5497	purine nucleobases degradation II (anaerobic)
Jden_0695	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Jden_0732	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Jden_0733	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Jden_0742	PWY-5392	reductive TCA cycle II
Jden_0742	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Jden_0742	PWY-5690	TCA cycle II (plants and fungi)
Jden_0742	PWY-5913	TCA cycle VI (obligate autotrophs)
Jden_0742	PWY-6728	methylaspartate cycle
Jden_0742	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Jden_0742	PWY-7254	TCA cycle VII (acetate-producers)
Jden_0742	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Jden_0743	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Jden_0743	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Jden_0743	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Jden_0743	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Jden_0747	PWY-7560	methylerythritol phosphate pathway II
Jden_0782	PWY-6825	phosphatidylcholine biosynthesis V
Jden_0798	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Jden_0807	PWY-6614	tetrahydrofolate biosynthesis
Jden_0809	PWY-5988	wound-induced proteolysis I
Jden_0809	PWY-6018	seed germination protein turnover
Jden_0818	PWY-3781	aerobic respiration I (cytochrome c)
Jden_0818	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Jden_0818	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Jden_0818	PWY-5690	TCA cycle II (plants and fungi)
Jden_0818	PWY-6728	methylaspartate cycle
Jden_0818	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Jden_0818	PWY-7254	TCA cycle VII (acetate-producers)
Jden_0818	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Jden_0819	PWY-3781	aerobic respiration I (cytochrome c)
Jden_0819	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Jden_0819	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Jden_0819	PWY-5690	TCA cycle II (plants and fungi)
Jden_0819	PWY-6728	methylaspartate cycle
Jden_0819	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Jden_0819	PWY-7254	TCA cycle VII (acetate-producers)
Jden_0819	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Jden_0822	PWY-5659	GDP-mannose biosynthesis
Jden_0822	PWY-6073	alginate biosynthesis I (algal)
Jden_0822	PWY-6082	alginate biosynthesis II (bacterial)
Jden_0822	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Jden_0828	PWY-6556	pyrimidine ribonucleosides salvage II
Jden_0828	PWY-7181	pyrimidine deoxyribonucleosides degradation
Jden_0828	PWY-7193	pyrimidine ribonucleosides salvage I
Jden_0828	PWY-7199	pyrimidine deoxyribonucleosides salvage
Jden_0829	PWY-7181	pyrimidine deoxyribonucleosides degradation
Jden_0832	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Jden_0834	PWY-6749	CMP-legionaminate biosynthesis I
Jden_0835	PWY-4202	arsenate detoxification I (glutaredoxin)
Jden_0835	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Jden_0835	PWY-6608	guanosine nucleotides degradation III
Jden_0835	PWY-6609	adenine and adenosine salvage III
Jden_0835	PWY-6611	adenine and adenosine salvage V
Jden_0835	PWY-6620	guanine and guanosine salvage
Jden_0835	PWY-6627	salinosporamide A biosynthesis
Jden_0835	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Jden_0835	PWY-7179	purine deoxyribonucleosides degradation I
Jden_0835	PWY-7179-1	purine deoxyribonucleosides degradation
Jden_0844	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Jden_0844	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Jden_0850	PWY-4381	fatty acid biosynthesis initiation I
Jden_0850	PWY-5743	3-hydroxypropanoate cycle
Jden_0850	PWY-5744	glyoxylate assimilation
Jden_0850	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Jden_0850	PWY-6679	jadomycin biosynthesis
Jden_0850	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Jden_0851	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Jden_0851	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Jden_0882	PWY-5381	pyridine nucleotide cycling (plants)
Jden_0885	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Jden_0885	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Jden_0887	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Jden_0938	PWY-7310	D-glucosaminate degradation
Jden_0941	PWY-5941	glycogen degradation II (eukaryotic)
Jden_0941	PWY-6724	starch degradation II
Jden_0941	PWY-6737	starch degradation V
Jden_0941	PWY-7238	sucrose biosynthesis II
Jden_0943	PWY-4061	glutathione-mediated detoxification I
Jden_0943	PWY-6842	glutathione-mediated detoxification II
Jden_0943	PWY-7112	4-hydroxy-2-nonenal detoxification
Jden_0947	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Jden_0947	PWY-5723	Rubisco shunt
Jden_0951	PWY-6936	seleno-amino acid biosynthesis
Jden_0951	PWY-7274	D-cycloserine biosynthesis
Jden_0952	PWY-6936	seleno-amino acid biosynthesis
Jden_0958	PWY-3461	L-tyrosine biosynthesis II
Jden_0958	PWY-3462	L-phenylalanine biosynthesis II
Jden_0958	PWY-6120	L-tyrosine biosynthesis III
Jden_0958	PWY-6627	salinosporamide A biosynthesis
Jden_0964	PWY-5199	factor 420 polyglutamylation
Jden_0968	PWY-3341	L-proline biosynthesis III
Jden_0968	PWY-4981	L-proline biosynthesis II (from arginine)
Jden_0968	PWY-6344	L-ornithine degradation II (Stickland reaction)
Jden_0971	PWY-2161	folate polyglutamylation
Jden_0976	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Jden_0976	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Jden_0976	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Jden_0976	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Jden_0976	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Jden_0976	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Jden_0976	PWY-7205	CMP phosphorylation
Jden_0976	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Jden_0976	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Jden_0976	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Jden_0976	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Jden_0976	PWY-7224	purine deoxyribonucleosides salvage
Jden_0976	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Jden_0976	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Jden_0988	PWY-6829	tRNA methylation (yeast)
Jden_0988	PWY-7285	methylwyosine biosynthesis
Jden_0988	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Jden_1011	PWY-7560	methylerythritol phosphate pathway II
Jden_1013	PWY-7560	methylerythritol phosphate pathway II
Jden_1022	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Jden_1022	PWY-6167	flavin biosynthesis II (archaea)
Jden_1022	PWY-6168	flavin biosynthesis III (fungi)
Jden_1027	PWY-2941	L-lysine biosynthesis II
Jden_1027	PWY-2942	L-lysine biosynthesis III
Jden_1027	PWY-5097	L-lysine biosynthesis VI
Jden_1030	PWY-3841	folate transformations II
Jden_1030	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Jden_1030	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Jden_1030	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Jden_1030	PWY-7199	pyrimidine deoxyribonucleosides salvage
Jden_1030	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Jden_1031	PWY-3841	folate transformations II
Jden_1031	PWY-6614	tetrahydrofolate biosynthesis
Jden_1032	PWY-2941	L-lysine biosynthesis II
Jden_1032	PWY-2942	L-lysine biosynthesis III
Jden_1032	PWY-5097	L-lysine biosynthesis VI
Jden_1035	PWY-5269	cardiolipin biosynthesis II
Jden_1035	PWY-5668	cardiolipin biosynthesis I
Jden_1048	PWY-2781	<i>cis</i>-zeatin biosynthesis
Jden_1049	PWY-2941	L-lysine biosynthesis II
Jden_1049	PWY-5097	L-lysine biosynthesis VI
Jden_1053	PWY-5481	pyruvate fermentation to lactate
Jden_1053	PWY-6901	superpathway of glucose and xylose degradation
Jden_1070	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Jden_1070	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Jden_1071	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Jden_1071	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Jden_1071	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Jden_1072	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Jden_1072	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Jden_1074	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Jden_1074	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Jden_1074	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Jden_1074	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Jden_1075	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Jden_1075	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Jden_1087	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Jden_1087	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Jden_1101	PWY-5506	methanol oxidation to formaldehyde IV
Jden_1111	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Jden_1111	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Jden_1112	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Jden_1113	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Jden_1113	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Jden_1115	PWY-4981	L-proline biosynthesis II (from arginine)
Jden_1115	PWY-4984	urea cycle
Jden_1115	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Jden_1117	PWY-4983	L-citrulline-nitric oxide cycle
Jden_1117	PWY-4984	urea cycle
Jden_1117	PWY-5	canavanine biosynthesis
Jden_1117	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Jden_1117	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Jden_1118	PWY-4983	L-citrulline-nitric oxide cycle
Jden_1118	PWY-4984	urea cycle
Jden_1118	PWY-5	canavanine biosynthesis
Jden_1118	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Jden_1118	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Jden_1125	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Jden_1125	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Jden_1125	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Jden_1127	PWY-6898	thiamin salvage III
Jden_1127	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Jden_1127	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Jden_1132	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Jden_1132	PWY-7177	UTP and CTP dephosphorylation II
Jden_1132	PWY-7185	UTP and CTP dephosphorylation I
Jden_1144	PWY-6823	molybdenum cofactor biosynthesis
Jden_1144	PWY-6891	thiazole biosynthesis II (Bacillus)
Jden_1144	PWY-6892	thiazole biosynthesis I (E. coli)
Jden_1144	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Jden_1152	PWY-5392	reductive TCA cycle II
Jden_1152	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Jden_1152	PWY-5690	TCA cycle II (plants and fungi)
Jden_1152	PWY-5913	TCA cycle VI (obligate autotrophs)
Jden_1152	PWY-6728	methylaspartate cycle
Jden_1152	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Jden_1152	PWY-7254	TCA cycle VII (acetate-producers)
Jden_1152	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Jden_1153	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Jden_1153	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Jden_1165	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Jden_1165	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Jden_1165	PWY-5989	stearate biosynthesis II (bacteria and plants)
Jden_1165	PWY-6113	superpathway of mycolate biosynthesis
Jden_1165	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Jden_1165	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Jden_1165	PWY-7096	triclosan resistance
Jden_1165	PWYG-321	mycolate biosynthesis
Jden_1172	PWY-622	starch biosynthesis
Jden_1173	PWY-622	starch biosynthesis
Jden_1181	PWY-6897	thiamin salvage II
Jden_1181	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Jden_1181	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Jden_1182	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Jden_1182	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Jden_1182	PWY-6897	thiamin salvage II
Jden_1182	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Jden_1182	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Jden_1182	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Jden_1182	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Jden_1183	PWY-6910	hydroxymethylpyrimidine salvage
Jden_1183	PWY-7356	thiamin salvage IV (yeast)
Jden_1183	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Jden_1200	PWY-6829	tRNA methylation (yeast)
Jden_1212	PWY-5958	acridone alkaloid biosynthesis
Jden_1212	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Jden_1212	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Jden_1221	PWY-1042	glycolysis IV (plant cytosol)
Jden_1221	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Jden_1221	PWY-5484	glycolysis II (from fructose 6-phosphate)
Jden_1221	PWY-5723	Rubisco shunt
Jden_1221	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Jden_1221	PWY-6886	1-butanol autotrophic biosynthesis
Jden_1221	PWY-6901	superpathway of glucose and xylose degradation
Jden_1221	PWY-7003	glycerol degradation to butanol
Jden_1221	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Jden_1221	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Jden_1228	PWY-1042	glycolysis IV (plant cytosol)
Jden_1228	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Jden_1228	PWY-5484	glycolysis II (from fructose 6-phosphate)
Jden_1228	PWY-7385	1,3-propanediol biosynthesis (engineered)
Jden_1239	PWY-6823	molybdenum cofactor biosynthesis
Jden_1241	PWY-6823	molybdenum cofactor biosynthesis
Jden_1242	PWY-6823	molybdenum cofactor biosynthesis
Jden_1256	PWY-1042	glycolysis IV (plant cytosol)
Jden_1256	PWY-5484	glycolysis II (from fructose 6-phosphate)
Jden_1256	PWY-6901	superpathway of glucose and xylose degradation
Jden_1256	PWY-7003	glycerol degradation to butanol
Jden_1257	PWY-1042	glycolysis IV (plant cytosol)
Jden_1257	PWY-5484	glycolysis II (from fructose 6-phosphate)
Jden_1257	PWY-6886	1-butanol autotrophic biosynthesis
Jden_1257	PWY-6901	superpathway of glucose and xylose degradation
Jden_1257	PWY-7003	glycerol degradation to butanol
Jden_1258	PWY-1042	glycolysis IV (plant cytosol)
Jden_1258	PWY-5484	glycolysis II (from fructose 6-phosphate)
Jden_1258	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Jden_1258	PWY-7003	glycerol degradation to butanol
Jden_1260	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Jden_1260	PWY-6855	chitin degradation I (archaea)
Jden_1260	PWY-6906	chitin derivatives degradation
Jden_1262	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Jden_1264	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Jden_1264	PWY-5723	Rubisco shunt
Jden_1264	PWY-6891	thiazole biosynthesis II (Bacillus)
Jden_1264	PWY-6892	thiazole biosynthesis I (E. coli)
Jden_1264	PWY-6901	superpathway of glucose and xylose degradation
Jden_1264	PWY-7560	methylerythritol phosphate pathway II
Jden_1271	PWY-7205	CMP phosphorylation
Jden_1273	PWY-3801	sucrose degradation II (sucrose synthase)
Jden_1273	PWY-6527	stachyose degradation
Jden_1273	PWY-6981	chitin biosynthesis
Jden_1273	PWY-7238	sucrose biosynthesis II
Jden_1273	PWY-7343	UDP-glucose biosynthesis
Jden_1298	PWY-5750	itaconate biosynthesis
Jden_1298	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Jden_1298	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Jden_1306	PWY-5269	cardiolipin biosynthesis II
Jden_1306	PWY-5668	cardiolipin biosynthesis I
Jden_1311	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Jden_1311	PWY-5723	Rubisco shunt
Jden_1315	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Jden_1315	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Jden_1318	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Jden_1320	PWY-5686	UMP biosynthesis
Jden_1321	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Jden_1321	PWY-5686	UMP biosynthesis
Jden_1321	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Jden_1322	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Jden_1322	PWY-5686	UMP biosynthesis
Jden_1322	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Jden_1324	PWY-5686	UMP biosynthesis
Jden_1325	PWY-5686	UMP biosynthesis
Jden_1326	PWY-7183	pyrimidine nucleobases salvage I
Jden_1333	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Jden_1333	PWY-6416	quinate degradation II
Jden_1333	PWY-6707	gallate biosynthesis
Jden_1334	PWY-6164	3-dehydroquinate biosynthesis I
Jden_1335	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Jden_1336	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Jden_1348	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Jden_1364	PWY-6605	adenine and adenosine salvage II
Jden_1364	PWY-6610	adenine and adenosine salvage IV
Jden_1381	PWY-6902	chitin degradation II
Jden_1382	PWY-5958	acridone alkaloid biosynthesis
Jden_1382	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Jden_1382	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Jden_1395	PWY-1361	benzoyl-CoA degradation I (aerobic)
Jden_1395	PWY-5109	2-methylbutanoate biosynthesis
Jden_1395	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Jden_1395	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Jden_1395	PWY-5177	glutaryl-CoA degradation
Jden_1395	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Jden_1395	PWY-6435	4-hydroxybenzoate biosynthesis V
Jden_1395	PWY-6583	pyruvate fermentation to butanol I
Jden_1395	PWY-6863	pyruvate fermentation to hexanol
Jden_1395	PWY-6883	pyruvate fermentation to butanol II
Jden_1395	PWY-6944	androstenedione degradation
Jden_1395	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Jden_1395	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Jden_1395	PWY-7007	methyl ketone biosynthesis
Jden_1395	PWY-7046	4-coumarate degradation (anaerobic)
Jden_1395	PWY-7094	fatty acid salvage
Jden_1395	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Jden_1395	PWY-735	jasmonic acid biosynthesis
Jden_1395	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Jden_1398	PWY-5480	pyruvate fermentation to ethanol I
Jden_1398	PWY-5485	pyruvate fermentation to acetate IV
Jden_1398	PWY-5493	reductive monocarboxylic acid cycle
Jden_1399	PWY-6891	thiazole biosynthesis II (Bacillus)
Jden_1399	PWY-6892	thiazole biosynthesis I (E. coli)
Jden_1399	PWY-7560	methylerythritol phosphate pathway II
Jden_1410	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Jden_1410	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Jden_1410	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Jden_1410	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Jden_1416	PWY-5392	reductive TCA cycle II
Jden_1416	PWY-5537	pyruvate fermentation to acetate V
Jden_1416	PWY-5538	pyruvate fermentation to acetate VI
Jden_1416	PWY-5690	TCA cycle II (plants and fungi)
Jden_1416	PWY-5913	TCA cycle VI (obligate autotrophs)
Jden_1416	PWY-6728	methylaspartate cycle
Jden_1416	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Jden_1416	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Jden_1418	PWY-2201	folate transformations I
Jden_1418	PWY-3841	folate transformations II
Jden_1437	PWY-6164	3-dehydroquinate biosynthesis I
Jden_1438	PWY-1042	glycolysis IV (plant cytosol)
Jden_1438	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Jden_1438	PWY-5484	glycolysis II (from fructose 6-phosphate)
Jden_1438	PWY-6531	mannitol cycle
Jden_1438	PWY-7385	1,3-propanediol biosynthesis (engineered)
Jden_1441	PWY-2723	trehalose degradation V
Jden_1441	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Jden_1441	PWY-5661	GDP-glucose biosynthesis
Jden_1441	PWY-7238	sucrose biosynthesis II
Jden_1441	PWY-7385	1,3-propanediol biosynthesis (engineered)
Jden_1450	PWY-6854	ethylene biosynthesis III (microbes)
Jden_1451	PWY-3781	aerobic respiration I (cytochrome c)
Jden_1451	PWY-4521	arsenite oxidation I (respiratory)
Jden_1451	PWY-6692	Fe(II) oxidation
Jden_1451	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Jden_1452	PWY-3781	aerobic respiration I (cytochrome c)
Jden_1452	PWY-4521	arsenite oxidation I (respiratory)
Jden_1452	PWY-6692	Fe(II) oxidation
Jden_1452	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Jden_1454	PWY-6823	molybdenum cofactor biosynthesis
Jden_1454	PWY-6891	thiazole biosynthesis II (Bacillus)
Jden_1454	PWY-6892	thiazole biosynthesis I (E. coli)
Jden_1454	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Jden_1458	PWY-5316	nicotine biosynthesis
Jden_1458	PWY-7342	superpathway of nicotine biosynthesis
Jden_1463	PWY-5686	UMP biosynthesis
Jden_1466	PWY-5988	wound-induced proteolysis I
Jden_1466	PWY-6018	seed germination protein turnover
Jden_1475	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Jden_1475	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Jden_1480	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Jden_1480	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Jden_1481	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Jden_1481	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Jden_1481	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Jden_1484	PWY-381	nitrate reduction II (assimilatory)
Jden_1484	PWY-5675	nitrate reduction V (assimilatory)
Jden_1484	PWY-6549	L-glutamine biosynthesis III
Jden_1484	PWY-6963	ammonia assimilation cycle I
Jden_1484	PWY-6964	ammonia assimilation cycle II
Jden_1487	PWY-381	nitrate reduction II (assimilatory)
Jden_1487	PWY-5675	nitrate reduction V (assimilatory)
Jden_1487	PWY-6549	L-glutamine biosynthesis III
Jden_1487	PWY-6963	ammonia assimilation cycle I
Jden_1487	PWY-6964	ammonia assimilation cycle II
Jden_1489	PWY-6654	phosphopantothenate biosynthesis III
Jden_1498	PWY-5663	tetrahydrobiopterin biosynthesis I
Jden_1498	PWY-5664	tetrahydrobiopterin biosynthesis II
Jden_1498	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Jden_1498	PWY-6703	preQ<sub>0</sub> biosynthesis
Jden_1498	PWY-6983	tetrahydrobiopterin biosynthesis III
Jden_1498	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Jden_1509	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Jden_1509	PWY-5723	Rubisco shunt
Jden_1512	PWY-6891	thiazole biosynthesis II (Bacillus)
Jden_1512	PWY-6892	thiazole biosynthesis I (E. coli)
Jden_1512	PWY-7560	methylerythritol phosphate pathway II
Jden_1516	PWY-4381	fatty acid biosynthesis initiation I
Jden_1540	PWY-6871	3-methylbutanol biosynthesis
Jden_1572	PWY-7254	TCA cycle VII (acetate-producers)
Jden_1574	PWY-7199	pyrimidine deoxyribonucleosides salvage
Jden_1580	PWY-6610	adenine and adenosine salvage IV
Jden_1585	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Jden_1600	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
Jden_1601	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
Jden_1606	PWY-5350	thiosulfate disproportionation III (rhodanese)
Jden_1627	PWY-4061	glutathione-mediated detoxification I
Jden_1627	PWY-6842	glutathione-mediated detoxification II
Jden_1627	PWY-7112	4-hydroxy-2-nonenal detoxification
Jden_1643	PWY-5381	pyridine nucleotide cycling (plants)
Jden_1643	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Jden_1648	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Jden_1678	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Jden_1678	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Jden_1678	PWY-6896	thiamin salvage I
Jden_1678	PWY-6897	thiamin salvage II
Jden_1680	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Jden_1680	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Jden_1682	PWY-5667	CDP-diacylglycerol biosynthesis I
Jden_1682	PWY-5981	CDP-diacylglycerol biosynthesis III
Jden_1684	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Jden_1684	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Jden_1688	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Jden_1699	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Jden_1701	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Jden_1701	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Jden_1702	PWY-5101	L-isoleucine biosynthesis II
Jden_1702	PWY-6871	3-methylbutanol biosynthesis
Jden_1703	PWY-5057	L-valine degradation II
Jden_1703	PWY-5076	L-leucine degradation III
Jden_1703	PWY-5078	L-isoleucine degradation II
Jden_1703	PWY-5101	L-isoleucine biosynthesis II
Jden_1703	PWY-5103	L-isoleucine biosynthesis III
Jden_1703	PWY-5104	L-isoleucine biosynthesis IV
Jden_1703	PWY-5108	L-isoleucine biosynthesis V
Jden_1704	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Jden_1708	PWY-5101	L-isoleucine biosynthesis II
Jden_1708	PWY-5103	L-isoleucine biosynthesis III
Jden_1708	PWY-5104	L-isoleucine biosynthesis IV
Jden_1708	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Jden_1709	PWY-5101	L-isoleucine biosynthesis II
Jden_1709	PWY-5103	L-isoleucine biosynthesis III
Jden_1709	PWY-5104	L-isoleucine biosynthesis IV
Jden_1709	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Jden_1709	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Jden_1709	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Jden_1709	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Jden_1710	PWY-5101	L-isoleucine biosynthesis II
Jden_1710	PWY-5103	L-isoleucine biosynthesis III
Jden_1710	PWY-5104	L-isoleucine biosynthesis IV
Jden_1710	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Jden_1710	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Jden_1710	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Jden_1710	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Jden_1711	PWY-5101	L-isoleucine biosynthesis II
Jden_1711	PWY-5103	L-isoleucine biosynthesis III
Jden_1711	PWY-5104	L-isoleucine biosynthesis IV
Jden_1711	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Jden_1714	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Jden_1722	PWY-6823	molybdenum cofactor biosynthesis
Jden_1722	PWY-6891	thiazole biosynthesis II (Bacillus)
Jden_1722	PWY-6892	thiazole biosynthesis I (E. coli)
Jden_1722	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Jden_1728	PWY-2622	trehalose biosynthesis IV
Jden_1728	PWY-842	starch degradation I
Jden_1729	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
Jden_1729	PWY-622	starch biosynthesis
Jden_1751	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Jden_1751	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Jden_1751	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Jden_1751	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Jden_1751	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Jden_1751	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Jden_1751	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Jden_1751	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Jden_1752	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Jden_1752	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Jden_1752	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Jden_1752	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Jden_1752	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Jden_1752	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Jden_1752	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Jden_1752	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Jden_1754	PWY-3121	linamarin degradation
Jden_1754	PWY-5176	coumarin biosynthesis (via 2-coumarate)
Jden_1754	PWY-6002	lotaustralin degradation
Jden_1754	PWY-6788	cellulose degradation II (fungi)
Jden_1754	PWY-7089	taxiphyllin bioactivation
Jden_1754	PWY-7091	linustatin bioactivation
Jden_1754	PWY-7092	neolinustatin bioactivation
Jden_1764	PWY-6807	xyloglucan degradation II (exoglucanase)
Jden_1774	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Jden_1776	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Jden_1782	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Jden_1782	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Jden_1782	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Jden_1787	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Jden_1788	PWY-702	L-methionine biosynthesis II
Jden_1792	PWY-2941	L-lysine biosynthesis II
Jden_1792	PWY-2942	L-lysine biosynthesis III
Jden_1792	PWY-5097	L-lysine biosynthesis VI
Jden_1798	PWY-3162	L-tryptophan degradation V (side chain pathway)
Jden_1798	PWY-5057	L-valine degradation II
Jden_1798	PWY-5076	L-leucine degradation III
Jden_1798	PWY-5078	L-isoleucine degradation II
Jden_1798	PWY-5079	L-phenylalanine degradation III
Jden_1798	PWY-5082	L-methionine degradation III
Jden_1798	PWY-5162	2-oxopentenoate degradation
Jden_1798	PWY-5436	L-threonine degradation IV
Jden_1798	PWY-5480	pyruvate fermentation to ethanol I
Jden_1798	PWY-5486	pyruvate fermentation to ethanol II
Jden_1798	PWY-5751	phenylethanol biosynthesis
Jden_1798	PWY-6028	acetoin degradation
Jden_1798	PWY-6313	serotonin degradation
Jden_1798	PWY-6333	acetaldehyde biosynthesis I
Jden_1798	PWY-6342	noradrenaline and adrenaline degradation
Jden_1798	PWY-6587	pyruvate fermentation to ethanol III
Jden_1798	PWY-6802	salidroside biosynthesis
Jden_1798	PWY-6871	3-methylbutanol biosynthesis
Jden_1798	PWY-7013	L-1,2-propanediol degradation
Jden_1798	PWY-7085	triethylamine degradation
Jden_1798	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Jden_1798	PWY-7118	chitin degradation to ethanol
Jden_1798	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Jden_1798	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Jden_1798	PWY-7557	dehydrodiconiferyl alcohol degradation
Jden_1806	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Jden_1812	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Jden_1837	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Jden_1842	PWY-7560	methylerythritol phosphate pathway II
Jden_1856	PWY-6749	CMP-legionaminate biosynthesis I
Jden_1863	PWY-3221	dTDP-L-rhamnose biosynthesis II
Jden_1863	PWY-6808	dTDP-D-forosamine biosynthesis
Jden_1863	PWY-6942	dTDP-D-desosamine biosynthesis
Jden_1863	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Jden_1863	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Jden_1863	PWY-6974	dTDP-L-olivose biosynthesis
Jden_1863	PWY-6976	dTDP-L-mycarose biosynthesis
Jden_1863	PWY-7104	dTDP-L-megosamine biosynthesis
Jden_1863	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Jden_1863	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Jden_1863	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Jden_1863	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Jden_1863	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Jden_1863	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Jden_1863	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Jden_1863	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Jden_1866	PWY-6123	inosine-5'-phosphate biosynthesis I
Jden_1866	PWY-7234	inosine-5'-phosphate biosynthesis III
Jden_1879	PWY-3121	linamarin degradation
Jden_1879	PWY-5176	coumarin biosynthesis (via 2-coumarate)
Jden_1879	PWY-6002	lotaustralin degradation
Jden_1879	PWY-6788	cellulose degradation II (fungi)
Jden_1879	PWY-7089	taxiphyllin bioactivation
Jden_1879	PWY-7091	linustatin bioactivation
Jden_1879	PWY-7092	neolinustatin bioactivation
Jden_1924	PWY-1042	glycolysis IV (plant cytosol)
Jden_1924	PWY-1622	formaldehyde assimilation I (serine pathway)
Jden_1924	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Jden_1924	PWY-5484	glycolysis II (from fructose 6-phosphate)
Jden_1924	PWY-5723	Rubisco shunt
Jden_1924	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Jden_1924	PWY-6886	1-butanol autotrophic biosynthesis
Jden_1924	PWY-6901	superpathway of glucose and xylose degradation
Jden_1924	PWY-7003	glycerol degradation to butanol
Jden_1924	PWY-7124	ethylene biosynthesis V (engineered)
Jden_1924	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Jden_1926	PWY-842	starch degradation I
Jden_1927	PWY-842	starch degradation I
Jden_1936	PWY-5101	L-isoleucine biosynthesis II
Jden_1936	PWY-5103	L-isoleucine biosynthesis III
Jden_1936	PWY-5104	L-isoleucine biosynthesis IV
Jden_1936	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Jden_1943	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Jden_1952	PWY-7560	methylerythritol phosphate pathway II
Jden_1968	PWY-6823	molybdenum cofactor biosynthesis
Jden_1993	PWY-3861	mannitol degradation II
Jden_1993	PWY-3881	mannitol biosynthesis
Jden_1993	PWY-5659	GDP-mannose biosynthesis
Jden_1993	PWY-7456	mannan degradation
Jden_1993	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Jden_2024	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Jden_2074	PWY-7560	methylerythritol phosphate pathway II
Jden_2075	PWY-7560	methylerythritol phosphate pathway II
Jden_2086	PWY-1622	formaldehyde assimilation I (serine pathway)
Jden_2086	PWY-5484	glycolysis II (from fructose 6-phosphate)
Jden_2093	PWY-5316	nicotine biosynthesis
Jden_2093	PWY-5381	pyridine nucleotide cycling (plants)
Jden_2093	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Jden_2093	PWY-7342	superpathway of nicotine biosynthesis
Jden_2094	PWY-5316	nicotine biosynthesis
Jden_2094	PWY-7342	superpathway of nicotine biosynthesis
Jden_2095	PWY-5155	&beta;-alanine biosynthesis III
Jden_2101	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Jden_2101	PWY-6148	tetrahydromethanopterin biosynthesis
Jden_2101	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Jden_2101	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Jden_2102	PWY-6614	tetrahydrofolate biosynthesis
Jden_2103	PWY-5663	tetrahydrobiopterin biosynthesis I
Jden_2103	PWY-5664	tetrahydrobiopterin biosynthesis II
Jden_2103	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Jden_2103	PWY-6703	preQ<sub>0</sub> biosynthesis
Jden_2103	PWY-6983	tetrahydrobiopterin biosynthesis III
Jden_2103	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Jden_2105	PWY-6599	guanine and guanosine salvage II
Jden_2105	PWY-6609	adenine and adenosine salvage III
Jden_2105	PWY-6610	adenine and adenosine salvage IV
Jden_2105	PWY-6620	guanine and guanosine salvage
Jden_2108	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Jden_2108	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Jden_2111	PWY-5344	L-homocysteine biosynthesis
Jden_2111	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Jden_2112	PWY-5344	L-homocysteine biosynthesis
Jden_2117	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Jden_2117	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Jden_2194	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Jden_2194	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Jden_2194	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Jden_2194	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Jden_2194	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Jden_2194	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Jden_2199	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Jden_2199	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Jden_2200	PWY-5194	siroheme biosynthesis
Jden_2200	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Jden_2201	PWY-6683	sulfate reduction III (assimilatory)
Jden_2207	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Jden_2207	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Jden_2207	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Jden_2209	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Jden_2209	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Jden_2209	PWY-7242	D-fructuronate degradation
Jden_2209	PWY-7310	D-glucosaminate degradation
Jden_2211	PWY-3821	galactose degradation III
Jden_2211	PWY-6317	galactose degradation I (Leloir pathway)
Jden_2211	PWY-6527	stachyose degradation
Jden_2212	PWY-6317	galactose degradation I (Leloir pathway)
Jden_2212	PWY-6527	stachyose degradation
Jden_2230	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Jden_2230	PWY-7118	chitin degradation to ethanol
Jden_2268	PWY-3821	galactose degradation III
Jden_2268	PWY-6317	galactose degradation I (Leloir pathway)
Jden_2268	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Jden_2268	PWY-6527	stachyose degradation
Jden_2268	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Jden_2268	PWY-7344	UDP-D-galactose biosynthesis
Jden_2351	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Jden_2351	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Jden_2351	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Jden_2352	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Jden_2352	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Jden_2352	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Jden_2352	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Jden_2364	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Jden_2364	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Jden_2364	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Jden_2376	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Jden_2376	PWY-6837	fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)
Jden_2376	PWY-6920	6-gingerol analog biosynthesis
Jden_2376	PWY-7007	methyl ketone biosynthesis
Jden_2376	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
Jden_2376	PWY-7291	oleate &beta;-oxidation (isomerase-dependent, yeast)
Jden_2376	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
Jden_2376	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
Jden_2376	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
Jden_2376	PWY-735	jasmonic acid biosynthesis
Jden_2383	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Jden_2397	PWY-6807	xyloglucan degradation II (exoglucanase)
Jden_2405	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
Jden_2405	PWY-7248	pectin degradation III
Jden_2408	PWY-5530	sorbitol biosynthesis II
Jden_2408	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Jden_2410	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Jden_2410	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Jden_2410	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Jden_2411	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Jden_2411	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Jden_2411	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Jden_2412	PWY-6123	inosine-5'-phosphate biosynthesis I
Jden_2412	PWY-6124	inosine-5'-phosphate biosynthesis II
Jden_2412	PWY-7234	inosine-5'-phosphate biosynthesis III
Jden_2413	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Jden_2413	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Jden_2413	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Jden_2416	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Jden_2420	PWY-1042	glycolysis IV (plant cytosol)
Jden_2420	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Jden_2420	PWY-5484	glycolysis II (from fructose 6-phosphate)
Jden_2420	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Jden_2420	PWY-7385	1,3-propanediol biosynthesis (engineered)
Jden_2425	PWY-5686	UMP biosynthesis
Jden_2441	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Jden_2461	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Jden_2461	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Jden_2476	PWY-6123	inosine-5'-phosphate biosynthesis I
Jden_2476	PWY-6124	inosine-5'-phosphate biosynthesis II
Jden_2476	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Jden_2476	PWY-7234	inosine-5'-phosphate biosynthesis III
Jden_2479	PWY-6527	stachyose degradation
Jden_2484	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Jden_2485	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Jden_2485	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Jden_2492	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Jden_2492	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Jden_2493	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Jden_2493	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Jden_2494	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Jden_2494	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Jden_2495	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Jden_2528	PWY-2301	<i>myo</i>-inositol biosynthesis
Jden_2528	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
Jden_2528	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
Jden_2528	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
Jden_2528	PWY-6664	di-myo-inositol phosphate biosynthesis
Jden_2533	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Jden_2533	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Jden_2550	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Jden_2550	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
